Multiple sequence alignment - TraesCS3D01G095200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G095200 chr3D 100.000 6764 0 0 1 6764 48371019 48364256 0.000000e+00 12491.0
1 TraesCS3D01G095200 chr3A 94.590 6007 213 50 151 6116 60512662 60506727 0.000000e+00 9190.0
2 TraesCS3D01G095200 chr3A 95.866 629 19 4 6142 6764 60505884 60505257 0.000000e+00 1011.0
3 TraesCS3D01G095200 chr3A 88.235 153 18 0 1 153 60512992 60512840 4.170000e-42 183.0
4 TraesCS3D01G095200 chr3A 86.111 144 19 1 2 145 60529579 60529437 3.270000e-33 154.0
5 TraesCS3D01G095200 chr3B 91.109 5826 339 81 198 5932 76438213 76432476 0.000000e+00 7723.0
6 TraesCS3D01G095200 chr3B 93.929 593 20 7 6171 6761 76430388 76430966 0.000000e+00 881.0
7 TraesCS3D01G095200 chr3B 96.818 220 7 0 6539 6758 668217020 668217239 1.070000e-97 368.0
8 TraesCS3D01G095200 chr3B 89.781 137 14 0 1 137 76438722 76438586 6.970000e-40 176.0
9 TraesCS3D01G095200 chr6B 80.586 649 98 17 2082 2725 555304634 555305259 6.140000e-130 475.0
10 TraesCS3D01G095200 chr6B 96.818 220 7 0 6539 6758 47945752 47945971 1.070000e-97 368.0
11 TraesCS3D01G095200 chr6D 83.838 495 69 6 3673 4157 370039679 370040172 1.720000e-125 460.0
12 TraesCS3D01G095200 chr6D 84.073 383 51 9 2082 2460 369906556 369906932 1.790000e-95 361.0
13 TraesCS3D01G095200 chr6D 84.928 345 37 6 3262 3606 370039220 370039549 1.090000e-87 335.0
14 TraesCS3D01G095200 chr6A 85.827 381 50 3 936 1316 510957060 510957436 1.060000e-107 401.0
15 TraesCS3D01G095200 chr6A 83.571 420 66 3 3739 4157 511034614 511035031 2.290000e-104 390.0
16 TraesCS3D01G095200 chr1A 83.217 143 22 2 5293 5434 497504567 497504426 5.510000e-26 130.0
17 TraesCS3D01G095200 chr1D 82.517 143 23 2 5293 5434 401667272 401667131 2.560000e-24 124.0
18 TraesCS3D01G095200 chr1B 82.517 143 23 2 5293 5434 539547582 539547441 2.560000e-24 124.0
19 TraesCS3D01G095200 chr5D 82.456 114 16 4 5292 5404 106520257 106520147 5.580000e-16 97.1
20 TraesCS3D01G095200 chr5B 84.848 99 11 4 5292 5389 115419202 115419297 5.580000e-16 97.1
21 TraesCS3D01G095200 chr5A 84.848 99 11 4 5292 5389 109966839 109966934 5.580000e-16 97.1
22 TraesCS3D01G095200 chr5A 82.653 98 17 0 5293 5390 631330410 631330507 3.360000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G095200 chr3D 48364256 48371019 6763 True 12491.000000 12491 100.000 1 6764 1 chr3D.!!$R1 6763
1 TraesCS3D01G095200 chr3A 60505257 60512992 7735 True 3461.333333 9190 92.897 1 6764 3 chr3A.!!$R2 6763
2 TraesCS3D01G095200 chr3B 76432476 76438722 6246 True 3949.500000 7723 90.445 1 5932 2 chr3B.!!$R1 5931
3 TraesCS3D01G095200 chr3B 76430388 76430966 578 False 881.000000 881 93.929 6171 6761 1 chr3B.!!$F1 590
4 TraesCS3D01G095200 chr6B 555304634 555305259 625 False 475.000000 475 80.586 2082 2725 1 chr6B.!!$F2 643
5 TraesCS3D01G095200 chr6D 370039220 370040172 952 False 397.500000 460 84.383 3262 4157 2 chr6D.!!$F2 895

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
608 958 0.107831 CCGTGGTTTGTCCTCCTTCA 59.892 55.000 0.0 0.0 37.07 3.02 F
1144 1498 0.452784 GTTGATTTGCTCGCCGTGTC 60.453 55.000 0.0 0.0 0.00 3.67 F
1395 1749 1.135527 TCGTCGTGTTGTGTCCTTCTT 59.864 47.619 0.0 0.0 0.00 2.52 F
2252 2642 1.140852 CTCCAACAGGTTCACTGGTCA 59.859 52.381 0.0 0.0 46.59 4.02 F
4150 4638 0.583438 CATCGCCCAAAGCTATCGTG 59.417 55.000 0.0 0.0 40.39 4.35 F
4370 4858 0.319986 TGACCAGCGTTGCGTGATTA 60.320 50.000 0.0 0.0 0.00 1.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2252 2642 1.511305 CCGAGTGACAGCGGTATGT 59.489 57.895 8.46 0.00 42.49 2.29 R
2261 2651 2.203640 AGAGGCCACCGAGTGACA 60.204 61.111 5.01 0.00 35.23 3.58 R
2836 3236 2.293399 GGTGAGGTTGTTGATGTTGGTC 59.707 50.000 0.00 0.00 0.00 4.02 R
4221 4709 1.339610 GCAATAACAACTGCACCACCA 59.660 47.619 0.00 0.00 38.48 4.17 R
5178 5679 0.037975 CCATTGTGCCCTTCACTTGC 60.038 55.000 0.00 0.00 45.81 4.01 R
6119 6644 0.323542 AGGCTGGAGCAGTACGTACT 60.324 55.000 22.45 22.45 44.36 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 0.529773 GTGTGTGAGTGCTTGACCGA 60.530 55.000 0.00 0.00 0.00 4.69
39 40 2.356313 AGTGCTTGACCGAGTGCG 60.356 61.111 0.00 0.00 37.24 5.34
148 149 0.544833 TGCTTGAACCATTGGGCCAT 60.545 50.000 7.26 0.00 37.90 4.40
174 513 3.423154 CGTGCGTGGGGAAGAAGC 61.423 66.667 0.00 0.00 0.00 3.86
175 514 2.281484 GTGCGTGGGGAAGAAGCA 60.281 61.111 0.00 0.00 35.27 3.91
272 612 6.417044 CGACAGATTGTTATAAAGGTACGAGG 59.583 42.308 0.00 0.00 0.00 4.63
285 625 2.896044 GGTACGAGGGTAATTAGGGGAG 59.104 54.545 0.00 0.00 0.00 4.30
593 943 1.651987 CCTTGCATGTAGTACCCGTG 58.348 55.000 0.00 0.00 0.00 4.94
604 954 0.321034 GTACCCGTGGTTTGTCCTCC 60.321 60.000 0.72 0.00 37.09 4.30
608 958 0.107831 CCGTGGTTTGTCCTCCTTCA 59.892 55.000 0.00 0.00 37.07 3.02
620 973 3.438434 GTCCTCCTTCATCTTTTGTCTGC 59.562 47.826 0.00 0.00 0.00 4.26
719 1072 7.256368 CCCAACCACTAAATTAAGGGCTAAAAA 60.256 37.037 0.00 0.00 0.00 1.94
800 1154 9.773328 CATCTATTCTTCTCGCATTTTTGTTTA 57.227 29.630 0.00 0.00 0.00 2.01
927 1281 5.172687 TGGTGTCACCTTCATATAGCAAA 57.827 39.130 22.56 0.00 39.58 3.68
956 1310 6.538021 CCTATTCTGACCTTCAAACAGATGAG 59.462 42.308 0.00 0.00 39.78 2.90
1073 1427 4.202441 GTCATCCTGGCTGATACAAATGT 58.798 43.478 3.22 0.00 0.00 2.71
1115 1469 5.418840 TCTTGCTTCTTCTTTCAGTTTGGTT 59.581 36.000 0.00 0.00 0.00 3.67
1116 1470 5.659440 TGCTTCTTCTTTCAGTTTGGTTT 57.341 34.783 0.00 0.00 0.00 3.27
1121 1475 7.628580 GCTTCTTCTTTCAGTTTGGTTTACTGT 60.629 37.037 0.00 0.00 42.77 3.55
1124 1478 4.097286 TCTTTCAGTTTGGTTTACTGTGGC 59.903 41.667 0.00 0.00 42.77 5.01
1128 1482 2.098443 AGTTTGGTTTACTGTGGCGTTG 59.902 45.455 0.00 0.00 0.00 4.10
1137 1491 0.453282 CTGTGGCGTTGATTTGCTCG 60.453 55.000 0.00 0.00 0.00 5.03
1144 1498 0.452784 GTTGATTTGCTCGCCGTGTC 60.453 55.000 0.00 0.00 0.00 3.67
1331 1685 6.148480 CCATAGATTTATACAAGGCTCTGTGC 59.852 42.308 11.08 0.00 41.94 4.57
1395 1749 1.135527 TCGTCGTGTTGTGTCCTTCTT 59.864 47.619 0.00 0.00 0.00 2.52
1399 1753 3.245519 GTCGTGTTGTGTCCTTCTTCTTC 59.754 47.826 0.00 0.00 0.00 2.87
1470 1824 1.762957 TCGGGGGACATTCAATCTCTC 59.237 52.381 0.00 0.00 0.00 3.20
1477 1831 4.202305 GGGACATTCAATCTCTCTCGGAAT 60.202 45.833 0.00 0.00 0.00 3.01
1528 1882 6.946583 TCTCCTCTGCTCTAGTTTAAACACTA 59.053 38.462 20.06 4.14 0.00 2.74
1529 1883 7.450634 TCTCCTCTGCTCTAGTTTAAACACTAA 59.549 37.037 20.06 2.39 0.00 2.24
1977 2344 4.525912 AAATTTGCCATGTTCAGAGGAC 57.474 40.909 0.00 0.00 0.00 3.85
1983 2350 4.858850 TGCCATGTTCAGAGGACATAAAT 58.141 39.130 0.00 0.00 36.04 1.40
1995 2362 8.548025 TCAGAGGACATAAATTCTATGGTTGAA 58.452 33.333 10.43 0.00 0.00 2.69
1999 2387 7.775561 AGGACATAAATTCTATGGTTGAACCTC 59.224 37.037 16.33 0.00 39.58 3.85
2055 2445 3.225104 TGGCAGTCTTTCTGAAAATGCT 58.775 40.909 22.79 11.97 46.27 3.79
2097 2487 6.808321 ATATGTGCTACTTTTGGACCTAGA 57.192 37.500 0.00 0.00 0.00 2.43
2117 2507 5.382618 AGAAGGCTGCAACTTTTTATCAG 57.617 39.130 0.50 0.00 0.00 2.90
2149 2539 7.335627 TGTTTATGTACCAGGATTTCACCTAG 58.664 38.462 0.00 0.00 38.32 3.02
2153 2543 5.030147 TGTACCAGGATTTCACCTAGTCAT 58.970 41.667 0.00 0.00 38.32 3.06
2252 2642 1.140852 CTCCAACAGGTTCACTGGTCA 59.859 52.381 0.00 0.00 46.59 4.02
2407 2797 5.279758 TTGTGAGTACATTCTCCGAAATGGA 60.280 40.000 0.00 0.00 40.28 3.41
2745 3143 7.750229 AAGTAAATGCATCCACATACTATGG 57.250 36.000 0.00 0.00 38.71 2.74
2836 3236 1.966451 GTTGTCTGGGCCAGTTCCG 60.966 63.158 31.60 8.51 32.61 4.30
2899 3304 5.531287 AGTGTCCTGTGTGTTTAATTCTTCC 59.469 40.000 0.00 0.00 0.00 3.46
2902 3307 6.605594 TGTCCTGTGTGTTTAATTCTTCCTTT 59.394 34.615 0.00 0.00 0.00 3.11
2953 3360 5.056480 AGCTTACAATCTTTTTGTTTGGCC 58.944 37.500 0.00 0.00 34.11 5.36
2975 3382 5.684704 CCCTAGCCATCTAGAAAACAATCA 58.315 41.667 0.00 0.00 43.95 2.57
3101 3508 4.595762 AAAGCATGAGCAACTTTGTCAT 57.404 36.364 0.00 0.00 45.49 3.06
3193 3600 7.658179 TGACTTCATTGTAAGTTTCTAGCTG 57.342 36.000 0.00 0.00 39.78 4.24
3228 3635 7.499563 TCTGCTCTCGTCTAGTATTTTATCAGT 59.500 37.037 0.00 0.00 0.00 3.41
3259 3668 9.763465 GCAAATTTATCTGACATTTTTCATTGG 57.237 29.630 0.00 0.00 0.00 3.16
3348 3757 1.507140 TCAGACACTGTGAGGGGTTT 58.493 50.000 15.86 0.00 32.61 3.27
3361 3772 3.514309 TGAGGGGTTTCTACTTGCTAGTC 59.486 47.826 3.45 0.00 35.78 2.59
3366 3777 4.930405 GGGTTTCTACTTGCTAGTCTTCAC 59.070 45.833 3.45 0.00 35.78 3.18
3367 3778 5.279556 GGGTTTCTACTTGCTAGTCTTCACT 60.280 44.000 3.45 0.00 35.78 3.41
3368 3779 5.635700 GGTTTCTACTTGCTAGTCTTCACTG 59.364 44.000 3.45 0.00 35.78 3.66
3369 3780 4.442375 TCTACTTGCTAGTCTTCACTGC 57.558 45.455 3.45 0.00 35.78 4.40
3370 3781 4.082845 TCTACTTGCTAGTCTTCACTGCT 58.917 43.478 3.45 0.00 35.78 4.24
3382 3793 7.353414 AGTCTTCACTGCTAGCTGATAAATA 57.647 36.000 26.29 8.43 0.00 1.40
3531 3942 3.998341 CTCCAAACAATTGATTTGCAGGG 59.002 43.478 13.59 4.02 38.94 4.45
3777 4259 7.870445 CCATATTCTACTTCTAAGAACTGCTCC 59.130 40.741 0.00 0.00 35.87 4.70
3903 4385 3.128938 ACCTCAGCAATGAGTCGTACTAC 59.871 47.826 4.68 0.00 34.27 2.73
3953 4435 1.282157 GTTCCTGTCATACAAGGCCCT 59.718 52.381 0.00 0.00 0.00 5.19
3975 4457 2.848213 CGACTCGATCGCTCTTCAC 58.152 57.895 11.09 0.00 45.52 3.18
4150 4638 0.583438 CATCGCCCAAAGCTATCGTG 59.417 55.000 0.00 0.00 40.39 4.35
4179 4667 3.084786 AGAGGTGCCAGCATCTAAAAAC 58.915 45.455 5.17 0.00 37.55 2.43
4221 4709 1.374343 TTATCGTCGGAGTCGCAGCT 61.374 55.000 0.00 0.00 39.21 4.24
4350 4838 4.455533 CGATCTCATCTTTGACCAACCAAA 59.544 41.667 0.00 0.00 35.09 3.28
4357 4845 3.636300 TCTTTGACCAACCAAATGACCAG 59.364 43.478 0.00 0.00 35.72 4.00
4358 4846 1.327303 TGACCAACCAAATGACCAGC 58.673 50.000 0.00 0.00 0.00 4.85
4364 4852 1.442520 CCAAATGACCAGCGTTGCG 60.443 57.895 0.00 0.00 0.00 4.85
4366 4854 0.998226 CAAATGACCAGCGTTGCGTG 60.998 55.000 0.00 0.00 0.00 5.34
4367 4855 1.163420 AAATGACCAGCGTTGCGTGA 61.163 50.000 0.00 0.00 0.00 4.35
4368 4856 0.955428 AATGACCAGCGTTGCGTGAT 60.955 50.000 0.00 0.00 0.00 3.06
4369 4857 0.955428 ATGACCAGCGTTGCGTGATT 60.955 50.000 0.00 0.00 0.00 2.57
4370 4858 0.319986 TGACCAGCGTTGCGTGATTA 60.320 50.000 0.00 0.00 0.00 1.75
4377 4865 2.095263 AGCGTTGCGTGATTAATTTGCT 60.095 40.909 8.39 0.00 0.00 3.91
4388 4876 6.030228 GTGATTAATTTGCTTGCTGACTACC 58.970 40.000 0.00 0.00 0.00 3.18
4401 4889 3.811083 CTGACTACCGACTACCATCTCT 58.189 50.000 0.00 0.00 0.00 3.10
4402 4890 3.542648 TGACTACCGACTACCATCTCTG 58.457 50.000 0.00 0.00 0.00 3.35
4403 4891 2.291190 GACTACCGACTACCATCTCTGC 59.709 54.545 0.00 0.00 0.00 4.26
4404 4892 1.609555 CTACCGACTACCATCTCTGCC 59.390 57.143 0.00 0.00 0.00 4.85
4528 5016 1.067582 GGAGGCGAACGACATAGGG 59.932 63.158 2.25 0.00 0.00 3.53
4553 5041 1.375326 GGCTTCGGGAAGGTGAAGT 59.625 57.895 10.22 0.00 42.77 3.01
4560 5048 1.066358 CGGGAAGGTGAAGTAGAACCC 60.066 57.143 0.00 0.00 37.13 4.11
4576 5077 3.579586 AGAACCCACATGTCATGCATTTT 59.420 39.130 12.91 1.77 35.19 1.82
4604 5105 4.040339 ACTTGATACACACATGTCAGGTCA 59.960 41.667 0.00 0.00 40.48 4.02
4605 5106 4.192429 TGATACACACATGTCAGGTCAG 57.808 45.455 0.00 0.00 40.48 3.51
4607 5108 1.423584 ACACACATGTCAGGTCAGGA 58.576 50.000 0.00 0.00 31.55 3.86
4608 5109 1.345741 ACACACATGTCAGGTCAGGAG 59.654 52.381 0.00 0.00 31.55 3.69
4624 5125 4.212214 GTCAGGAGTGATCAAATATTCCGC 59.788 45.833 0.00 0.00 34.36 5.54
4626 5127 3.069586 AGGAGTGATCAAATATTCCGCGA 59.930 43.478 8.23 0.00 0.00 5.87
4877 5378 3.187227 CACAGGTGAAATTTCTCGGTCAG 59.813 47.826 18.64 6.99 0.00 3.51
4882 5383 3.189287 GTGAAATTTCTCGGTCAGTGCAT 59.811 43.478 18.64 0.00 0.00 3.96
4884 5385 1.089920 ATTTCTCGGTCAGTGCATGC 58.910 50.000 11.82 11.82 0.00 4.06
4886 5387 0.671472 TTCTCGGTCAGTGCATGCAG 60.671 55.000 23.41 10.99 0.00 4.41
4887 5388 1.375140 CTCGGTCAGTGCATGCAGT 60.375 57.895 23.41 22.90 0.00 4.40
4888 5389 1.632948 CTCGGTCAGTGCATGCAGTG 61.633 60.000 38.57 38.57 45.85 3.66
4889 5390 1.962822 CGGTCAGTGCATGCAGTGT 60.963 57.895 40.43 20.48 45.02 3.55
4890 5391 1.871772 GGTCAGTGCATGCAGTGTC 59.128 57.895 40.43 36.17 45.02 3.67
4891 5392 0.886043 GGTCAGTGCATGCAGTGTCA 60.886 55.000 40.43 27.36 45.02 3.58
4892 5393 0.516001 GTCAGTGCATGCAGTGTCAG 59.484 55.000 40.43 24.39 45.02 3.51
4893 5394 1.209383 CAGTGCATGCAGTGTCAGC 59.791 57.895 36.78 18.58 41.18 4.26
4894 5395 1.970114 AGTGCATGCAGTGTCAGCC 60.970 57.895 26.95 9.85 0.00 4.85
4895 5396 2.113562 TGCATGCAGTGTCAGCCA 59.886 55.556 18.46 0.00 0.00 4.75
4896 5397 1.969589 TGCATGCAGTGTCAGCCAG 60.970 57.895 18.46 0.00 0.00 4.85
4905 5406 1.302752 TGTCAGCCAGGTGCATCAC 60.303 57.895 0.00 0.00 44.83 3.06
4977 5478 4.729856 GGTAAGTCCGGCGTGCGT 62.730 66.667 6.01 0.00 0.00 5.24
5016 5517 4.498520 CGCGTCATCCTCGGCACT 62.499 66.667 0.00 0.00 0.00 4.40
5233 5744 4.142315 CCAACCTTACAAGCTTGATGATGG 60.142 45.833 32.50 24.98 0.00 3.51
5247 5761 6.511767 GCTTGATGATGGTTATAAGTTGGACG 60.512 42.308 0.00 0.00 0.00 4.79
5258 5772 7.011763 GGTTATAAGTTGGACGGTCCTAATTTC 59.988 40.741 24.50 14.46 37.46 2.17
5259 5773 4.360951 AAGTTGGACGGTCCTAATTTCA 57.639 40.909 26.41 2.84 37.46 2.69
5260 5774 3.939066 AGTTGGACGGTCCTAATTTCAG 58.061 45.455 26.41 0.00 37.46 3.02
5262 5776 4.070009 GTTGGACGGTCCTAATTTCAGTT 58.930 43.478 26.41 0.00 37.46 3.16
5263 5777 3.670625 TGGACGGTCCTAATTTCAGTTG 58.329 45.455 26.41 0.00 37.46 3.16
5277 5793 2.195096 TCAGTTGTTTGTACACGTCCG 58.805 47.619 0.00 0.00 32.98 4.79
5288 5804 4.903010 ACGTCCGTGTGGGTGTGC 62.903 66.667 0.00 0.00 37.00 4.57
5290 5806 4.555709 GTCCGTGTGGGTGTGCCA 62.556 66.667 0.00 0.00 37.00 4.92
5291 5807 3.565214 TCCGTGTGGGTGTGCCAT 61.565 61.111 0.00 0.00 37.00 4.40
5352 5868 1.512310 GACGGAGAAGAGCGACGTG 60.512 63.158 0.00 0.00 37.96 4.49
5475 5991 2.584608 GACCTGTACGGCCTGCAT 59.415 61.111 0.00 0.00 35.61 3.96
5535 6051 4.840005 GGCGGGCTGGAGCAGTAC 62.840 72.222 0.20 0.00 44.36 2.73
5783 6299 1.965411 GCTAGCTAGCTGCCATGGC 60.965 63.158 33.71 30.54 45.62 4.40
5803 6319 3.585862 GCCATGTACCGTACCATATCAG 58.414 50.000 6.23 0.00 0.00 2.90
5822 6338 1.568612 GGTGTGAGTGTGATGCGTGG 61.569 60.000 0.00 0.00 0.00 4.94
5885 6407 7.816995 GCCTTATGTGTAAATTTTGGTTGATGA 59.183 33.333 0.00 0.00 0.00 2.92
5918 6442 6.942005 TGTATGGATTGAGCATTAGGTAATGG 59.058 38.462 10.92 0.00 42.46 3.16
5958 6483 8.138712 TCTCTGAGTTAGTTTCTCTTTCACTTC 58.861 37.037 4.32 0.00 33.59 3.01
5986 6511 3.181169 AACTGCTGGCGCGAACAAC 62.181 57.895 12.10 3.69 39.65 3.32
6002 6527 5.616204 GCGAACAACGTTAGCTTCCTTTTAT 60.616 40.000 0.00 0.00 44.60 1.40
6011 6536 7.117956 ACGTTAGCTTCCTTTTATCAGAAAGTC 59.882 37.037 0.00 0.00 35.37 3.01
6021 6546 8.846211 CCTTTTATCAGAAAGTCCTGTTTGTTA 58.154 33.333 0.00 0.00 35.37 2.41
6057 6582 7.816945 ATGCTTGTCAATAAGTGCAATAAAC 57.183 32.000 0.00 0.00 34.07 2.01
6116 6641 3.441101 AGTAGTGTATGTCTCCTGCCAA 58.559 45.455 0.00 0.00 0.00 4.52
6118 6643 2.260822 AGTGTATGTCTCCTGCCAAGT 58.739 47.619 0.00 0.00 0.00 3.16
6119 6644 3.441101 AGTGTATGTCTCCTGCCAAGTA 58.559 45.455 0.00 0.00 0.00 2.24
6120 6645 3.449018 AGTGTATGTCTCCTGCCAAGTAG 59.551 47.826 0.00 0.00 0.00 2.57
6121 6646 3.195825 GTGTATGTCTCCTGCCAAGTAGT 59.804 47.826 0.00 0.00 0.00 2.73
6123 6648 4.401519 TGTATGTCTCCTGCCAAGTAGTAC 59.598 45.833 0.00 0.00 0.00 2.73
6124 6649 1.816835 TGTCTCCTGCCAAGTAGTACG 59.183 52.381 0.00 0.00 0.00 3.67
6125 6650 1.817447 GTCTCCTGCCAAGTAGTACGT 59.183 52.381 0.00 0.00 0.00 3.57
6126 6651 3.012518 GTCTCCTGCCAAGTAGTACGTA 58.987 50.000 0.00 0.00 0.00 3.57
6127 6652 3.012518 TCTCCTGCCAAGTAGTACGTAC 58.987 50.000 18.10 18.10 0.00 3.67
6128 6653 3.015327 CTCCTGCCAAGTAGTACGTACT 58.985 50.000 29.62 29.62 44.51 2.73
6129 6654 2.751259 TCCTGCCAAGTAGTACGTACTG 59.249 50.000 33.23 19.47 41.50 2.74
6130 6655 2.527100 CTGCCAAGTAGTACGTACTGC 58.473 52.381 33.23 31.37 41.50 4.40
6132 6657 2.163010 TGCCAAGTAGTACGTACTGCTC 59.837 50.000 36.06 26.64 46.34 4.26
6133 6658 2.479219 GCCAAGTAGTACGTACTGCTCC 60.479 54.545 36.06 25.59 46.34 4.70
6134 6659 2.751259 CCAAGTAGTACGTACTGCTCCA 59.249 50.000 36.06 17.12 46.34 3.86
6135 6660 3.181499 CCAAGTAGTACGTACTGCTCCAG 60.181 52.174 36.06 28.34 46.34 3.86
6136 6661 2.015587 AGTAGTACGTACTGCTCCAGC 58.984 52.381 32.58 16.27 44.28 4.85
6137 6662 1.065251 GTAGTACGTACTGCTCCAGCC 59.935 57.143 33.23 10.45 41.18 4.85
6138 6663 0.323542 AGTACGTACTGCTCCAGCCT 60.324 55.000 26.87 0.00 41.18 4.58
6139 6664 0.531200 GTACGTACTGCTCCAGCCTT 59.469 55.000 18.47 0.00 41.18 4.35
6140 6665 0.815734 TACGTACTGCTCCAGCCTTC 59.184 55.000 0.00 0.00 41.18 3.46
6153 7495 3.138283 TCCAGCCTTCCTTACATTATGGG 59.862 47.826 0.00 0.00 0.00 4.00
6164 7506 1.141053 ACATTATGGGACGGAGGAAGC 59.859 52.381 0.00 0.00 0.00 3.86
6277 7621 7.883391 ATACGGTATATGATAGAGGAACTGG 57.117 40.000 0.00 0.00 41.55 4.00
6280 7624 6.434652 ACGGTATATGATAGAGGAACTGGAAG 59.565 42.308 0.00 0.00 41.55 3.46
6602 7949 0.733150 CGATCTCGTACAGCACCAGA 59.267 55.000 0.00 0.00 34.11 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.224069 GCACTCACACACACGCATCT 61.224 55.000 0.00 0.00 0.00 2.90
10 11 1.449423 AAGCACTCACACACACGCA 60.449 52.632 0.00 0.00 0.00 5.24
101 102 2.434884 CAGGTAGTGTGCGCCAGG 60.435 66.667 4.18 0.00 0.00 4.45
148 149 1.374885 CCCACGCACGGACATTGTA 60.375 57.895 0.00 0.00 0.00 2.41
174 513 4.729856 GCTGCCGCTGCCCTTTTG 62.730 66.667 10.97 0.00 36.33 2.44
272 612 4.352893 TCCCTAATTGCTCCCCTAATTACC 59.647 45.833 0.00 0.00 0.00 2.85
285 625 5.012893 CCCCTAATCATCTTCCCTAATTGC 58.987 45.833 0.00 0.00 0.00 3.56
311 651 6.148480 CCAACTTACAGATTATGCCAGCTATC 59.852 42.308 0.00 0.00 0.00 2.08
530 871 5.183228 GGAAACTTCCGATGTTCCTCATTA 58.817 41.667 0.47 0.00 37.65 1.90
593 943 4.584743 ACAAAAGATGAAGGAGGACAAACC 59.415 41.667 0.00 0.00 39.35 3.27
604 954 4.472691 TTGACGCAGACAAAAGATGAAG 57.527 40.909 0.00 0.00 39.45 3.02
620 973 4.263677 GCATGTGCATTGAAGTATTTGACG 59.736 41.667 0.00 0.00 41.59 4.35
719 1072 5.806654 AATGACAGGGTTTGCATAGTTTT 57.193 34.783 0.00 0.00 0.00 2.43
800 1154 2.040412 ACCTTGGAGAAAAATCGGAGCT 59.960 45.455 0.00 0.00 0.00 4.09
927 1281 4.263905 TGTTTGAAGGTCAGAATAGGCCAT 60.264 41.667 5.01 0.00 0.00 4.40
956 1310 5.863935 GTGTCCCTGAAATGATTTTAGTTGC 59.136 40.000 8.59 0.20 0.00 4.17
1115 1469 2.225491 GAGCAAATCAACGCCACAGTAA 59.775 45.455 0.00 0.00 0.00 2.24
1116 1470 1.804151 GAGCAAATCAACGCCACAGTA 59.196 47.619 0.00 0.00 0.00 2.74
1121 1475 2.560861 GCGAGCAAATCAACGCCA 59.439 55.556 0.00 0.00 44.27 5.69
1124 1478 1.509787 CACGGCGAGCAAATCAACG 60.510 57.895 16.62 0.00 34.08 4.10
1128 1482 1.298859 AAGGACACGGCGAGCAAATC 61.299 55.000 16.62 0.00 0.00 2.17
1137 1491 0.824759 ATAGACAGGAAGGACACGGC 59.175 55.000 0.00 0.00 0.00 5.68
1144 1498 5.674525 TGCAAACATAGATAGACAGGAAGG 58.325 41.667 0.00 0.00 0.00 3.46
1395 1749 3.210227 TCTGCAAAACATCCAACGAAGA 58.790 40.909 0.00 0.00 0.00 2.87
1399 1753 3.003689 AGTCTTCTGCAAAACATCCAACG 59.996 43.478 0.00 0.00 0.00 4.10
1542 1896 4.695455 GTCCTCACTGAAATCGGATTGAAA 59.305 41.667 3.59 0.00 0.00 2.69
1977 2344 8.970859 AGAGAGGTTCAACCATAGAATTTATG 57.029 34.615 9.90 0.00 41.95 1.90
1983 2350 6.433847 TGAAAGAGAGGTTCAACCATAGAA 57.566 37.500 9.90 0.00 41.95 2.10
1995 2362 3.008485 GGTCTCATGGTTGAAAGAGAGGT 59.992 47.826 0.00 0.00 37.77 3.85
1999 2387 4.006319 GGAAGGTCTCATGGTTGAAAGAG 58.994 47.826 0.00 0.00 0.00 2.85
2055 2445 7.804600 GCACATATATGATTGCGATTTTCTGAA 59.195 33.333 19.63 0.00 0.00 3.02
2097 2487 5.535753 AACTGATAAAAAGTTGCAGCCTT 57.464 34.783 0.00 0.00 36.52 4.35
2149 2539 9.495754 GCAGAGATTTGTGTAGAAAAATATGAC 57.504 33.333 0.00 0.00 0.00 3.06
2153 2543 8.621532 AGTGCAGAGATTTGTGTAGAAAAATA 57.378 30.769 0.00 0.00 0.00 1.40
2163 2553 3.996150 AACCAAGTGCAGAGATTTGTG 57.004 42.857 0.00 0.00 0.00 3.33
2252 2642 1.511305 CCGAGTGACAGCGGTATGT 59.489 57.895 8.46 0.00 42.49 2.29
2261 2651 2.203640 AGAGGCCACCGAGTGACA 60.204 61.111 5.01 0.00 35.23 3.58
2343 2733 5.009410 CAGATTATCCAAGCCAGGATTTGTC 59.991 44.000 12.29 8.63 46.12 3.18
2355 2745 8.461222 TGCTTTGTATTTGTCAGATTATCCAAG 58.539 33.333 0.00 0.00 0.00 3.61
2436 2828 8.559536 GGCGATGTAAAATCTTCAGATATCAAA 58.440 33.333 5.32 0.00 33.73 2.69
2745 3143 8.539770 AATCACATATGCATGCTAGTAAGTAC 57.460 34.615 20.33 0.00 35.39 2.73
2836 3236 2.293399 GGTGAGGTTGTTGATGTTGGTC 59.707 50.000 0.00 0.00 0.00 4.02
2924 3329 6.959639 ACAAAAAGATTGTAAGCTTCCTCA 57.040 33.333 0.00 0.00 32.73 3.86
2953 3360 5.238214 GCTGATTGTTTTCTAGATGGCTAGG 59.762 44.000 0.00 0.00 43.52 3.02
2975 3382 4.341783 GCAGTGGGCCAGTGAGCT 62.342 66.667 38.98 16.41 36.99 4.09
3101 3508 4.164981 AGGTGTTGTTACTCATGTCCCTA 58.835 43.478 0.00 0.00 0.00 3.53
3193 3600 6.557110 ACTAGACGAGAGCAGAAAAGATAAC 58.443 40.000 0.00 0.00 0.00 1.89
3228 3635 9.206870 GAAAAATGTCAGATAAATTTGCCTTGA 57.793 29.630 0.00 0.00 0.00 3.02
3259 3668 4.082245 GCAGATTCTCTAGGTATCTGGAGC 60.082 50.000 11.40 0.00 44.99 4.70
3348 3757 4.082845 AGCAGTGAAGACTAGCAAGTAGA 58.917 43.478 0.00 0.00 35.56 2.59
3361 3772 9.481340 TTGTATATTTATCAGCTAGCAGTGAAG 57.519 33.333 18.83 0.00 0.00 3.02
3531 3942 3.311871 AGTGAGCTGATCGATTTGATTGC 59.688 43.478 0.00 0.00 37.47 3.56
3975 4457 3.244976 GTTCGCATCAAAGAATGGGTTG 58.755 45.455 0.00 0.00 39.76 3.77
4150 4638 1.656441 CTGGCACCTCTGTTGCAAC 59.344 57.895 22.83 22.83 0.00 4.17
4179 4667 1.600413 GGCAACTTGTTCGCCTTTGAG 60.600 52.381 14.89 0.00 42.78 3.02
4221 4709 1.339610 GCAATAACAACTGCACCACCA 59.660 47.619 0.00 0.00 38.48 4.17
4350 4838 0.955428 AATCACGCAACGCTGGTCAT 60.955 50.000 0.00 0.00 0.00 3.06
4357 4845 2.250188 AGCAAATTAATCACGCAACGC 58.750 42.857 6.50 0.00 0.00 4.84
4358 4846 3.480185 GCAAGCAAATTAATCACGCAACG 60.480 43.478 6.50 0.00 0.00 4.10
4364 4852 6.030228 GGTAGTCAGCAAGCAAATTAATCAC 58.970 40.000 0.00 0.00 0.00 3.06
4366 4854 5.064707 TCGGTAGTCAGCAAGCAAATTAATC 59.935 40.000 0.00 0.00 0.00 1.75
4367 4855 4.941263 TCGGTAGTCAGCAAGCAAATTAAT 59.059 37.500 0.00 0.00 0.00 1.40
4368 4856 4.153475 GTCGGTAGTCAGCAAGCAAATTAA 59.847 41.667 0.00 0.00 0.00 1.40
4369 4857 3.682858 GTCGGTAGTCAGCAAGCAAATTA 59.317 43.478 0.00 0.00 0.00 1.40
4370 4858 2.484264 GTCGGTAGTCAGCAAGCAAATT 59.516 45.455 0.00 0.00 0.00 1.82
4377 4865 1.913778 TGGTAGTCGGTAGTCAGCAA 58.086 50.000 0.00 0.00 0.00 3.91
4388 4876 0.249238 GCAGGCAGAGATGGTAGTCG 60.249 60.000 0.00 0.00 0.00 4.18
4401 4889 1.151221 TCCAAAGAAGCTGCAGGCA 59.849 52.632 17.12 0.00 44.79 4.75
4402 4890 1.174712 TGTCCAAAGAAGCTGCAGGC 61.175 55.000 17.12 7.98 42.19 4.85
4403 4891 1.201647 CATGTCCAAAGAAGCTGCAGG 59.798 52.381 17.12 0.00 0.00 4.85
4404 4892 2.156917 TCATGTCCAAAGAAGCTGCAG 58.843 47.619 10.11 10.11 0.00 4.41
4477 4965 3.261643 TGGTTATCTTCTTCAGCTCAGCA 59.738 43.478 0.00 0.00 0.00 4.41
4483 4971 8.499403 AGAAGTTATTGGTTATCTTCTTCAGC 57.501 34.615 0.00 0.00 41.23 4.26
4528 5016 2.437716 TTCCCGAAGCCGCCATTC 60.438 61.111 0.00 0.00 0.00 2.67
4553 5041 3.650281 ATGCATGACATGTGGGTTCTA 57.350 42.857 16.62 0.00 37.70 2.10
4560 5048 9.356433 TCAAGTTATAAAAATGCATGACATGTG 57.644 29.630 16.62 2.49 39.60 3.21
4576 5077 8.318412 ACCTGACATGTGTGTATCAAGTTATAA 58.682 33.333 1.15 0.00 39.09 0.98
4591 5092 1.620323 TCACTCCTGACCTGACATGTG 59.380 52.381 1.15 0.00 0.00 3.21
4604 5105 3.069586 TCGCGGAATATTTGATCACTCCT 59.930 43.478 6.13 0.00 0.00 3.69
4605 5106 3.390135 TCGCGGAATATTTGATCACTCC 58.610 45.455 6.13 0.00 0.00 3.85
4607 5108 4.452455 GGAATCGCGGAATATTTGATCACT 59.548 41.667 6.13 0.00 0.00 3.41
4608 5109 4.213270 TGGAATCGCGGAATATTTGATCAC 59.787 41.667 6.13 0.00 0.00 3.06
4624 5125 4.188462 TGTAAACCTGCAGTATGGAATCG 58.812 43.478 13.81 0.00 34.45 3.34
4626 5127 4.526970 CCTGTAAACCTGCAGTATGGAAT 58.473 43.478 13.81 0.00 34.45 3.01
4877 5378 2.196382 CTGGCTGACACTGCATGCAC 62.196 60.000 18.46 7.77 0.00 4.57
4882 5383 2.111669 CACCTGGCTGACACTGCA 59.888 61.111 0.00 0.00 0.00 4.41
4884 5385 1.303074 ATGCACCTGGCTGACACTG 60.303 57.895 0.00 0.00 45.15 3.66
4886 5387 1.302752 TGATGCACCTGGCTGACAC 60.303 57.895 0.00 0.00 45.15 3.67
4887 5388 1.302752 GTGATGCACCTGGCTGACA 60.303 57.895 0.00 0.00 45.15 3.58
4888 5389 1.002868 AGTGATGCACCTGGCTGAC 60.003 57.895 0.00 0.00 45.15 3.51
4889 5390 1.297689 GAGTGATGCACCTGGCTGA 59.702 57.895 0.00 0.00 45.15 4.26
4890 5391 0.393944 ATGAGTGATGCACCTGGCTG 60.394 55.000 0.00 0.00 45.15 4.85
4891 5392 0.330604 AATGAGTGATGCACCTGGCT 59.669 50.000 0.00 0.00 45.15 4.75
4892 5393 1.135199 CAAATGAGTGATGCACCTGGC 60.135 52.381 0.00 0.00 45.13 4.85
4893 5394 2.163010 GACAAATGAGTGATGCACCTGG 59.837 50.000 0.00 0.00 34.49 4.45
4894 5395 2.815503 TGACAAATGAGTGATGCACCTG 59.184 45.455 0.00 0.00 34.49 4.00
4895 5396 3.144657 TGACAAATGAGTGATGCACCT 57.855 42.857 0.00 0.00 34.49 4.00
4896 5397 4.157289 AGAATGACAAATGAGTGATGCACC 59.843 41.667 0.00 0.00 34.49 5.01
4905 5406 4.798907 GCATGAGCAAGAATGACAAATGAG 59.201 41.667 0.00 0.00 41.58 2.90
4977 5478 1.984570 CCTCCGCTTCCAGTCCAGA 60.985 63.158 0.00 0.00 0.00 3.86
5001 5502 2.887568 GCAGTGCCGAGGATGACG 60.888 66.667 2.85 0.00 0.00 4.35
5178 5679 0.037975 CCATTGTGCCCTTCACTTGC 60.038 55.000 0.00 0.00 45.81 4.01
5233 5744 7.550196 TGAAATTAGGACCGTCCAACTTATAAC 59.450 37.037 19.95 3.60 39.61 1.89
5247 5761 7.136772 GTGTACAAACAACTGAAATTAGGACC 58.863 38.462 0.00 0.00 37.36 4.46
5258 5772 1.928503 ACGGACGTGTACAAACAACTG 59.071 47.619 0.00 0.00 37.36 3.16
5259 5773 1.928503 CACGGACGTGTACAAACAACT 59.071 47.619 16.06 0.00 40.91 3.16
5260 5774 2.356386 CACGGACGTGTACAAACAAC 57.644 50.000 16.06 0.00 40.91 3.32
5288 5804 1.463674 GTCCAAGTAACCCTGCATGG 58.536 55.000 6.46 6.46 0.00 3.66
5289 5805 1.463674 GGTCCAAGTAACCCTGCATG 58.536 55.000 0.00 0.00 0.00 4.06
5290 5806 3.978876 GGTCCAAGTAACCCTGCAT 57.021 52.632 0.00 0.00 0.00 3.96
5352 5868 2.432628 AGCACGCCGAAGCTGTAC 60.433 61.111 7.90 0.00 40.13 2.90
5409 5925 4.580551 CGGACGATGTACCGCCCC 62.581 72.222 0.00 0.00 42.55 5.80
5475 5991 4.954118 ACCGGGTCCAGCAGGTCA 62.954 66.667 6.32 0.00 35.89 4.02
5595 6111 2.824489 TCGATCTCGCTCACCGCT 60.824 61.111 0.00 0.00 39.60 5.52
5783 6299 3.576982 ACCTGATATGGTACGGTACATGG 59.423 47.826 19.14 11.47 38.79 3.66
5803 6319 1.568612 CCACGCATCACACTCACACC 61.569 60.000 0.00 0.00 0.00 4.16
5822 6338 3.855689 ACATAGCACACAAATTCAGCC 57.144 42.857 0.00 0.00 0.00 4.85
5896 6420 6.204852 TCCATTACCTAATGCTCAATCCAT 57.795 37.500 0.15 0.00 41.23 3.41
5903 6427 8.677148 TCTGTTTTATCCATTACCTAATGCTC 57.323 34.615 0.15 0.00 41.23 4.26
5958 6483 1.347817 GCCAGCAGTTCGAACTCTCG 61.348 60.000 27.54 19.11 46.87 4.04
5986 6511 7.365840 ACTTTCTGATAAAAGGAAGCTAACG 57.634 36.000 0.00 0.00 39.96 3.18
5988 6513 7.607991 CAGGACTTTCTGATAAAAGGAAGCTAA 59.392 37.037 0.00 0.00 39.96 3.09
6011 6536 9.643693 AGCATTTCTCATTTAATAACAAACAGG 57.356 29.630 0.00 0.00 0.00 4.00
6067 6592 6.596497 GGGGATCGTATTTCTTTGTGTTAGAA 59.404 38.462 0.00 0.00 0.00 2.10
6068 6593 6.110707 GGGGATCGTATTTCTTTGTGTTAGA 58.889 40.000 0.00 0.00 0.00 2.10
6069 6594 5.006358 CGGGGATCGTATTTCTTTGTGTTAG 59.994 44.000 0.00 0.00 0.00 2.34
6070 6595 4.871557 CGGGGATCGTATTTCTTTGTGTTA 59.128 41.667 0.00 0.00 0.00 2.41
6116 6641 2.015587 GCTGGAGCAGTACGTACTACT 58.984 52.381 25.12 25.12 41.59 2.57
6118 6643 1.064906 AGGCTGGAGCAGTACGTACTA 60.065 52.381 26.95 11.14 44.36 1.82
6119 6644 0.323542 AGGCTGGAGCAGTACGTACT 60.324 55.000 22.45 22.45 44.36 2.73
6120 6645 0.531200 AAGGCTGGAGCAGTACGTAC 59.469 55.000 18.10 18.10 44.36 3.67
6121 6646 0.815734 GAAGGCTGGAGCAGTACGTA 59.184 55.000 0.20 0.00 44.36 3.57
6123 6648 1.153549 GGAAGGCTGGAGCAGTACG 60.154 63.158 0.20 0.00 44.36 3.67
6124 6649 0.615850 AAGGAAGGCTGGAGCAGTAC 59.384 55.000 0.20 0.00 44.36 2.73
6125 6650 1.831736 GTAAGGAAGGCTGGAGCAGTA 59.168 52.381 0.20 0.00 44.36 2.74
6126 6651 0.615850 GTAAGGAAGGCTGGAGCAGT 59.384 55.000 0.20 0.00 44.36 4.40
6127 6652 0.615331 TGTAAGGAAGGCTGGAGCAG 59.385 55.000 0.20 0.00 44.36 4.24
6128 6653 1.289160 ATGTAAGGAAGGCTGGAGCA 58.711 50.000 0.20 0.00 44.36 4.26
6129 6654 2.426842 AATGTAAGGAAGGCTGGAGC 57.573 50.000 0.00 0.00 41.14 4.70
6130 6655 4.392940 CCATAATGTAAGGAAGGCTGGAG 58.607 47.826 0.00 0.00 0.00 3.86
6131 6656 3.138283 CCCATAATGTAAGGAAGGCTGGA 59.862 47.826 0.00 0.00 0.00 3.86
6132 6657 3.138283 TCCCATAATGTAAGGAAGGCTGG 59.862 47.826 0.00 0.00 0.00 4.85
6133 6658 4.137543 GTCCCATAATGTAAGGAAGGCTG 58.862 47.826 0.00 0.00 0.00 4.85
6134 6659 3.181454 CGTCCCATAATGTAAGGAAGGCT 60.181 47.826 0.00 0.00 0.00 4.58
6135 6660 3.139077 CGTCCCATAATGTAAGGAAGGC 58.861 50.000 0.00 0.00 0.00 4.35
6136 6661 3.389983 TCCGTCCCATAATGTAAGGAAGG 59.610 47.826 3.77 3.77 46.02 3.46
6137 6662 4.503296 CCTCCGTCCCATAATGTAAGGAAG 60.503 50.000 0.00 0.00 0.00 3.46
6138 6663 3.389983 CCTCCGTCCCATAATGTAAGGAA 59.610 47.826 0.00 0.00 0.00 3.36
6139 6664 2.969950 CCTCCGTCCCATAATGTAAGGA 59.030 50.000 0.00 0.00 0.00 3.36
6140 6665 2.969950 TCCTCCGTCCCATAATGTAAGG 59.030 50.000 0.00 0.00 0.00 2.69
6153 7495 1.089920 TACGTACTGCTTCCTCCGTC 58.910 55.000 0.00 0.00 0.00 4.79
6164 7506 7.862741 TGTCTGAAATTTGTAGTACGTACTG 57.137 36.000 33.23 15.45 37.10 2.74
6257 7601 8.423906 TTCTTCCAGTTCCTCTATCATATACC 57.576 38.462 0.00 0.00 0.00 2.73
6308 7652 1.133419 CCTCCTCCTCCTAGGTACCAC 60.133 61.905 15.94 0.00 37.91 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.