Multiple sequence alignment - TraesCS3D01G094200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G094200 chr3D 100.000 2216 0 0 1 2216 47778551 47780766 0.000000e+00 4093.0
1 TraesCS3D01G094200 chr3D 81.308 214 10 9 3 202 561829720 561829917 1.770000e-31 147.0
2 TraesCS3D01G094200 chr3A 90.741 702 40 17 913 1595 60200355 60201050 0.000000e+00 913.0
3 TraesCS3D01G094200 chr3A 91.509 530 27 14 239 759 60199841 60200361 0.000000e+00 713.0
4 TraesCS3D01G094200 chr3A 82.126 414 53 13 1803 2210 60201252 60201650 3.530000e-88 335.0
5 TraesCS3D01G094200 chr3A 91.549 142 11 1 1672 1813 60201094 60201234 6.240000e-46 195.0
6 TraesCS3D01G094200 chr3A 87.857 140 15 2 1673 1810 60200813 60200952 1.760000e-36 163.0
7 TraesCS3D01G094200 chrUn 88.907 613 39 12 915 1501 39461563 39460954 0.000000e+00 728.0
8 TraesCS3D01G094200 chrUn 87.500 576 40 13 209 758 39462132 39461563 8.630000e-179 636.0
9 TraesCS3D01G094200 chrUn 81.890 381 25 21 1568 1904 39461238 39460858 4.660000e-72 281.0
10 TraesCS3D01G094200 chr3B 88.907 613 39 12 915 1501 75317327 75317936 0.000000e+00 728.0
11 TraesCS3D01G094200 chr3B 87.500 576 40 13 209 758 75316758 75317327 8.630000e-179 636.0
12 TraesCS3D01G094200 chr3B 81.890 381 25 21 1568 1904 75317652 75318032 4.660000e-72 281.0
13 TraesCS3D01G094200 chr3B 94.857 175 9 0 752 926 680348948 680348774 7.800000e-70 274.0
14 TraesCS3D01G094200 chr3B 95.210 167 7 1 751 917 834486 834321 1.690000e-66 263.0
15 TraesCS3D01G094200 chr7B 93.889 180 7 4 755 932 411745438 411745261 3.630000e-68 268.0
16 TraesCS3D01G094200 chr2B 96.319 163 6 0 755 917 616962791 616962953 3.630000e-68 268.0
17 TraesCS3D01G094200 chr5D 94.737 171 9 0 746 916 151671539 151671709 1.300000e-67 267.0
18 TraesCS3D01G094200 chr5D 87.429 175 7 8 31 203 505986873 505986712 1.040000e-43 187.0
19 TraesCS3D01G094200 chr2A 96.296 162 6 0 755 916 189020998 189020837 1.300000e-67 267.0
20 TraesCS3D01G094200 chr2A 83.645 214 12 8 1 204 628342662 628342862 1.750000e-41 180.0
21 TraesCS3D01G094200 chr2A 83.412 211 12 7 1 202 300326243 300326047 8.130000e-40 174.0
22 TraesCS3D01G094200 chr1A 95.210 167 8 0 752 918 254348912 254349078 4.690000e-67 265.0
23 TraesCS3D01G094200 chr6D 94.675 169 9 0 748 916 204160186 204160018 1.690000e-66 263.0
24 TraesCS3D01G094200 chr4D 94.675 169 9 0 755 923 416432035 416431867 1.690000e-66 263.0
25 TraesCS3D01G094200 chr1D 86.512 215 8 6 1 204 300055817 300055613 1.330000e-52 217.0
26 TraesCS3D01G094200 chr7D 86.385 213 9 9 2 204 127481107 127480905 4.790000e-52 215.0
27 TraesCS3D01G094200 chr5A 84.507 213 10 11 1 204 54262022 54262220 2.900000e-44 189.0
28 TraesCS3D01G094200 chr5A 82.407 216 20 7 2 208 374575968 374575762 2.930000e-39 172.0
29 TraesCS3D01G094200 chr6A 89.873 79 6 2 125 202 411419006 411418929 1.400000e-17 100.0
30 TraesCS3D01G094200 chr2D 91.667 48 4 0 660 707 30741733 30741780 1.420000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G094200 chr3D 47778551 47780766 2215 False 4093.000000 4093 100.0000 1 2216 1 chr3D.!!$F1 2215
1 TraesCS3D01G094200 chr3A 60199841 60201650 1809 False 463.800000 913 88.7564 239 2210 5 chr3A.!!$F1 1971
2 TraesCS3D01G094200 chrUn 39460858 39462132 1274 True 548.333333 728 86.0990 209 1904 3 chrUn.!!$R1 1695
3 TraesCS3D01G094200 chr3B 75316758 75318032 1274 False 548.333333 728 86.0990 209 1904 3 chr3B.!!$F1 1695

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
75 76 0.10339 TACGTGACCATGGCCATACG 59.897 55.0 28.68 28.68 37.54 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1650 1991 0.028902 CTCGTACATGGCGATCGACA 59.971 55.0 28.59 28.59 37.74 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.560636 GTGACCATGGCTATAGGTGTT 57.439 47.619 13.04 0.00 35.36 3.32
21 22 3.886123 GTGACCATGGCTATAGGTGTTT 58.114 45.455 13.04 0.00 35.36 2.83
22 23 4.270008 GTGACCATGGCTATAGGTGTTTT 58.730 43.478 13.04 0.00 35.36 2.43
23 24 5.433526 GTGACCATGGCTATAGGTGTTTTA 58.566 41.667 13.04 0.00 35.36 1.52
24 25 5.527582 GTGACCATGGCTATAGGTGTTTTAG 59.472 44.000 13.04 0.00 35.36 1.85
25 26 5.427157 TGACCATGGCTATAGGTGTTTTAGA 59.573 40.000 13.04 0.00 35.36 2.10
26 27 6.069905 TGACCATGGCTATAGGTGTTTTAGAA 60.070 38.462 13.04 0.00 35.36 2.10
27 28 6.911308 ACCATGGCTATAGGTGTTTTAGAAT 58.089 36.000 13.04 0.00 33.57 2.40
28 29 6.998673 ACCATGGCTATAGGTGTTTTAGAATC 59.001 38.462 13.04 0.00 33.57 2.52
29 30 6.431234 CCATGGCTATAGGTGTTTTAGAATCC 59.569 42.308 0.00 0.00 0.00 3.01
30 31 5.607477 TGGCTATAGGTGTTTTAGAATCCG 58.393 41.667 1.04 0.00 0.00 4.18
31 32 4.995487 GGCTATAGGTGTTTTAGAATCCGG 59.005 45.833 0.00 0.00 0.00 5.14
32 33 5.221581 GGCTATAGGTGTTTTAGAATCCGGA 60.222 44.000 6.61 6.61 0.00 5.14
33 34 5.695363 GCTATAGGTGTTTTAGAATCCGGAC 59.305 44.000 6.12 0.00 0.00 4.79
34 35 2.968675 AGGTGTTTTAGAATCCGGACG 58.031 47.619 6.12 0.00 0.00 4.79
35 36 2.301009 AGGTGTTTTAGAATCCGGACGT 59.699 45.455 6.12 0.00 0.00 4.34
36 37 2.414138 GGTGTTTTAGAATCCGGACGTG 59.586 50.000 6.12 0.00 0.00 4.49
37 38 2.070783 TGTTTTAGAATCCGGACGTGC 58.929 47.619 6.12 0.00 0.00 5.34
38 39 1.395954 GTTTTAGAATCCGGACGTGCC 59.604 52.381 6.12 0.00 0.00 5.01
39 40 0.899720 TTTAGAATCCGGACGTGCCT 59.100 50.000 6.12 1.98 0.00 4.75
40 41 1.766494 TTAGAATCCGGACGTGCCTA 58.234 50.000 6.12 0.92 0.00 3.93
41 42 1.315690 TAGAATCCGGACGTGCCTAG 58.684 55.000 6.12 0.00 0.00 3.02
42 43 0.683504 AGAATCCGGACGTGCCTAGT 60.684 55.000 6.12 0.00 0.00 2.57
43 44 1.027357 GAATCCGGACGTGCCTAGTA 58.973 55.000 6.12 0.00 0.00 1.82
44 45 1.612463 GAATCCGGACGTGCCTAGTAT 59.388 52.381 6.12 0.00 0.00 2.12
45 46 1.700955 ATCCGGACGTGCCTAGTATT 58.299 50.000 6.12 0.00 0.00 1.89
46 47 1.477553 TCCGGACGTGCCTAGTATTT 58.522 50.000 0.00 0.00 0.00 1.40
47 48 1.826720 TCCGGACGTGCCTAGTATTTT 59.173 47.619 0.00 0.00 0.00 1.82
48 49 2.234414 TCCGGACGTGCCTAGTATTTTT 59.766 45.455 0.00 0.00 0.00 1.94
69 70 2.953466 TTCTAGTACGTGACCATGGC 57.047 50.000 13.04 5.35 0.00 4.40
70 71 1.108776 TCTAGTACGTGACCATGGCC 58.891 55.000 13.04 0.00 0.00 5.36
71 72 0.821517 CTAGTACGTGACCATGGCCA 59.178 55.000 13.04 8.56 0.00 5.36
72 73 1.412710 CTAGTACGTGACCATGGCCAT 59.587 52.381 14.09 14.09 0.00 4.40
73 74 1.491668 AGTACGTGACCATGGCCATA 58.508 50.000 20.30 0.00 0.00 2.74
74 75 1.138266 AGTACGTGACCATGGCCATAC 59.862 52.381 20.30 12.30 0.00 2.39
75 76 0.103390 TACGTGACCATGGCCATACG 59.897 55.000 28.68 28.68 37.54 3.06
76 77 1.153449 CGTGACCATGGCCATACGT 60.153 57.895 24.34 20.32 0.00 3.57
77 78 1.428370 CGTGACCATGGCCATACGTG 61.428 60.000 24.34 12.93 0.00 4.49
78 79 0.392461 GTGACCATGGCCATACGTGT 60.392 55.000 20.30 13.27 0.00 4.49
79 80 0.107897 TGACCATGGCCATACGTGTC 60.108 55.000 20.30 20.90 0.00 3.67
80 81 0.107897 GACCATGGCCATACGTGTCA 60.108 55.000 20.30 0.00 0.00 3.58
81 82 0.546122 ACCATGGCCATACGTGTCAT 59.454 50.000 20.30 0.00 0.00 3.06
82 83 0.946528 CCATGGCCATACGTGTCATG 59.053 55.000 20.30 10.99 36.10 3.07
83 84 1.667236 CATGGCCATACGTGTCATGT 58.333 50.000 20.30 2.65 33.85 3.21
84 85 1.331447 CATGGCCATACGTGTCATGTG 59.669 52.381 20.30 0.00 33.85 3.21
85 86 0.323302 TGGCCATACGTGTCATGTGT 59.677 50.000 0.00 0.00 0.00 3.72
86 87 1.550976 TGGCCATACGTGTCATGTGTA 59.449 47.619 0.00 0.00 0.00 2.90
87 88 1.931172 GGCCATACGTGTCATGTGTAC 59.069 52.381 8.00 0.00 0.00 2.90
88 89 1.931172 GCCATACGTGTCATGTGTACC 59.069 52.381 8.00 0.00 0.00 3.34
89 90 2.418197 GCCATACGTGTCATGTGTACCT 60.418 50.000 8.00 0.00 0.00 3.08
90 91 3.181484 GCCATACGTGTCATGTGTACCTA 60.181 47.826 8.00 0.00 0.00 3.08
91 92 4.678574 GCCATACGTGTCATGTGTACCTAA 60.679 45.833 8.00 0.00 0.00 2.69
92 93 5.597806 CCATACGTGTCATGTGTACCTAAT 58.402 41.667 8.00 0.00 0.00 1.73
93 94 6.736519 GCCATACGTGTCATGTGTACCTAATA 60.737 42.308 8.00 0.00 0.00 0.98
94 95 7.375834 CCATACGTGTCATGTGTACCTAATAT 58.624 38.462 8.00 0.00 0.00 1.28
95 96 7.870954 CCATACGTGTCATGTGTACCTAATATT 59.129 37.037 8.00 0.00 0.00 1.28
96 97 8.912658 CATACGTGTCATGTGTACCTAATATTC 58.087 37.037 8.00 0.00 0.00 1.75
97 98 7.108841 ACGTGTCATGTGTACCTAATATTCT 57.891 36.000 0.00 0.00 0.00 2.40
98 99 8.229253 ACGTGTCATGTGTACCTAATATTCTA 57.771 34.615 0.00 0.00 0.00 2.10
99 100 8.689061 ACGTGTCATGTGTACCTAATATTCTAA 58.311 33.333 0.00 0.00 0.00 2.10
100 101 9.692749 CGTGTCATGTGTACCTAATATTCTAAT 57.307 33.333 0.00 0.00 0.00 1.73
119 120 8.836268 TTCTAATATTGTCGTGTGTAACCTTT 57.164 30.769 0.00 0.00 34.36 3.11
120 121 8.836268 TCTAATATTGTCGTGTGTAACCTTTT 57.164 30.769 0.00 0.00 34.36 2.27
121 122 8.928733 TCTAATATTGTCGTGTGTAACCTTTTC 58.071 33.333 0.00 0.00 34.36 2.29
122 123 4.823790 ATTGTCGTGTGTAACCTTTTCC 57.176 40.909 0.00 0.00 34.36 3.13
123 124 3.263489 TGTCGTGTGTAACCTTTTCCA 57.737 42.857 0.00 0.00 34.36 3.53
124 125 3.607741 TGTCGTGTGTAACCTTTTCCAA 58.392 40.909 0.00 0.00 34.36 3.53
125 126 4.008330 TGTCGTGTGTAACCTTTTCCAAA 58.992 39.130 0.00 0.00 34.36 3.28
126 127 4.458295 TGTCGTGTGTAACCTTTTCCAAAA 59.542 37.500 0.00 0.00 34.36 2.44
127 128 5.048224 TGTCGTGTGTAACCTTTTCCAAAAA 60.048 36.000 0.00 0.00 34.36 1.94
152 153 6.803154 AAAAATCAAAACGGGACAAAACAA 57.197 29.167 0.00 0.00 0.00 2.83
153 154 6.803154 AAAATCAAAACGGGACAAAACAAA 57.197 29.167 0.00 0.00 0.00 2.83
154 155 6.415798 AAATCAAAACGGGACAAAACAAAG 57.584 33.333 0.00 0.00 0.00 2.77
155 156 4.522722 TCAAAACGGGACAAAACAAAGT 57.477 36.364 0.00 0.00 0.00 2.66
156 157 4.238514 TCAAAACGGGACAAAACAAAGTG 58.761 39.130 0.00 0.00 0.00 3.16
157 158 2.951457 AACGGGACAAAACAAAGTGG 57.049 45.000 0.00 0.00 0.00 4.00
158 159 2.131776 ACGGGACAAAACAAAGTGGA 57.868 45.000 0.00 0.00 0.00 4.02
159 160 2.448453 ACGGGACAAAACAAAGTGGAA 58.552 42.857 0.00 0.00 0.00 3.53
160 161 2.164827 ACGGGACAAAACAAAGTGGAAC 59.835 45.455 0.00 0.00 0.00 3.62
161 162 2.480587 CGGGACAAAACAAAGTGGAACC 60.481 50.000 0.00 0.00 37.80 3.62
162 163 2.498078 GGGACAAAACAAAGTGGAACCA 59.502 45.455 0.00 0.00 37.80 3.67
163 164 3.055747 GGGACAAAACAAAGTGGAACCAA 60.056 43.478 0.00 0.00 37.80 3.67
164 165 4.563786 GGGACAAAACAAAGTGGAACCAAA 60.564 41.667 0.00 0.00 37.80 3.28
165 166 4.390603 GGACAAAACAAAGTGGAACCAAAC 59.609 41.667 0.00 0.00 37.80 2.93
166 167 4.320023 ACAAAACAAAGTGGAACCAAACC 58.680 39.130 0.00 0.00 37.80 3.27
167 168 4.202367 ACAAAACAAAGTGGAACCAAACCA 60.202 37.500 0.00 0.00 37.80 3.67
168 169 4.625607 AAACAAAGTGGAACCAAACCAA 57.374 36.364 0.00 0.00 39.22 3.67
169 170 3.885724 ACAAAGTGGAACCAAACCAAG 57.114 42.857 0.00 0.00 39.22 3.61
170 171 3.436243 ACAAAGTGGAACCAAACCAAGA 58.564 40.909 0.00 0.00 39.22 3.02
171 172 3.835395 ACAAAGTGGAACCAAACCAAGAA 59.165 39.130 0.00 0.00 39.22 2.52
172 173 4.469586 ACAAAGTGGAACCAAACCAAGAAT 59.530 37.500 0.00 0.00 39.22 2.40
173 174 5.659079 ACAAAGTGGAACCAAACCAAGAATA 59.341 36.000 0.00 0.00 39.22 1.75
174 175 6.326323 ACAAAGTGGAACCAAACCAAGAATAT 59.674 34.615 0.00 0.00 39.22 1.28
175 176 6.590234 AAGTGGAACCAAACCAAGAATATC 57.410 37.500 0.00 0.00 39.22 1.63
176 177 5.892348 AGTGGAACCAAACCAAGAATATCT 58.108 37.500 0.00 0.00 39.22 1.98
177 178 7.027874 AGTGGAACCAAACCAAGAATATCTA 57.972 36.000 0.00 0.00 39.22 1.98
178 179 7.643123 AGTGGAACCAAACCAAGAATATCTAT 58.357 34.615 0.00 0.00 39.22 1.98
179 180 8.116026 AGTGGAACCAAACCAAGAATATCTATT 58.884 33.333 0.00 0.00 39.22 1.73
180 181 8.406297 GTGGAACCAAACCAAGAATATCTATTC 58.594 37.037 0.00 2.34 39.22 1.75
181 182 7.559897 TGGAACCAAACCAAGAATATCTATTCC 59.440 37.037 6.37 0.00 36.71 3.01
182 183 7.014326 GGAACCAAACCAAGAATATCTATTCCC 59.986 40.741 6.37 0.00 42.29 3.97
183 184 7.226059 ACCAAACCAAGAATATCTATTCCCT 57.774 36.000 6.37 0.00 42.29 4.20
184 185 7.652554 ACCAAACCAAGAATATCTATTCCCTT 58.347 34.615 6.37 0.00 42.29 3.95
185 186 8.787818 ACCAAACCAAGAATATCTATTCCCTTA 58.212 33.333 6.37 0.00 42.29 2.69
186 187 9.640952 CCAAACCAAGAATATCTATTCCCTTAA 57.359 33.333 6.37 0.00 42.29 1.85
225 226 3.476485 AAGGAGACTACTAGTTGGCCT 57.524 47.619 6.55 7.96 42.68 5.19
230 231 3.507411 AGACTACTAGTTGGCCTGTCAA 58.493 45.455 6.55 0.00 0.00 3.18
235 236 3.421844 ACTAGTTGGCCTGTCAAATTCC 58.578 45.455 3.32 0.00 0.00 3.01
327 337 1.065928 GCTAGTCATGTCCCCGTCG 59.934 63.158 0.00 0.00 0.00 5.12
416 426 2.744709 ACGTATGTTGCACCGCCC 60.745 61.111 0.00 0.00 0.00 6.13
417 427 2.744318 CGTATGTTGCACCGCCCA 60.744 61.111 0.00 0.00 0.00 5.36
516 534 9.256477 TGGAATTTAGTGCTATAGTCAAATACG 57.744 33.333 0.84 0.00 0.00 3.06
713 742 0.526211 TCAGGATCGTCGTTCACCAG 59.474 55.000 5.71 0.00 0.00 4.00
714 743 0.243907 CAGGATCGTCGTTCACCAGT 59.756 55.000 5.71 0.00 0.00 4.00
715 744 0.526662 AGGATCGTCGTTCACCAGTC 59.473 55.000 5.71 0.00 0.00 3.51
716 745 0.526662 GGATCGTCGTTCACCAGTCT 59.473 55.000 5.71 0.00 0.00 3.24
740 771 1.004277 CTCGAGAGTGCGTGGTTCAC 61.004 60.000 6.58 0.00 34.80 3.18
754 785 4.196971 GTGGTTCACTTCAACAGGTAAGT 58.803 43.478 0.00 0.00 36.38 2.24
757 788 5.129815 TGGTTCACTTCAACAGGTAAGTACT 59.870 40.000 0.00 0.00 34.23 2.73
758 789 5.695363 GGTTCACTTCAACAGGTAAGTACTC 59.305 44.000 0.00 0.00 34.23 2.59
759 790 5.464030 TCACTTCAACAGGTAAGTACTCC 57.536 43.478 0.00 0.00 34.23 3.85
760 791 4.282703 TCACTTCAACAGGTAAGTACTCCC 59.717 45.833 0.00 0.00 34.23 4.30
761 792 4.283722 CACTTCAACAGGTAAGTACTCCCT 59.716 45.833 7.99 7.99 34.23 4.20
762 793 4.527427 ACTTCAACAGGTAAGTACTCCCTC 59.473 45.833 10.38 0.00 34.23 4.30
763 794 3.438183 TCAACAGGTAAGTACTCCCTCC 58.562 50.000 10.38 4.73 0.00 4.30
764 795 2.140839 ACAGGTAAGTACTCCCTCCG 57.859 55.000 10.38 4.76 0.00 4.63
765 796 1.357079 ACAGGTAAGTACTCCCTCCGT 59.643 52.381 10.38 5.28 0.00 4.69
766 797 2.225217 ACAGGTAAGTACTCCCTCCGTT 60.225 50.000 10.38 0.00 0.00 4.44
767 798 2.426381 CAGGTAAGTACTCCCTCCGTTC 59.574 54.545 10.38 0.00 0.00 3.95
768 799 1.753649 GGTAAGTACTCCCTCCGTTCC 59.246 57.143 0.00 0.00 0.00 3.62
769 800 2.622714 GGTAAGTACTCCCTCCGTTCCT 60.623 54.545 0.00 0.00 0.00 3.36
770 801 3.372025 GGTAAGTACTCCCTCCGTTCCTA 60.372 52.174 0.00 0.00 0.00 2.94
771 802 3.463048 AAGTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
772 803 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
773 804 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
774 805 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
775 806 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
776 807 6.856757 AGTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
777 808 7.300658 AGTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
778 809 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
779 810 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
780 811 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
781 812 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
782 813 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
783 814 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
784 815 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
785 816 8.202137 CCTCCGTTCCTAAATATAAGTCTTTGA 58.798 37.037 0.00 0.00 0.00 2.69
786 817 9.595823 CTCCGTTCCTAAATATAAGTCTTTGAA 57.404 33.333 0.00 0.00 0.00 2.69
787 818 9.595823 TCCGTTCCTAAATATAAGTCTTTGAAG 57.404 33.333 0.00 0.00 0.00 3.02
788 819 9.595823 CCGTTCCTAAATATAAGTCTTTGAAGA 57.404 33.333 0.00 0.00 0.00 2.87
804 835 9.308318 GTCTTTGAAGAGATTCTACTATGAACC 57.692 37.037 0.00 0.00 35.32 3.62
805 836 9.035890 TCTTTGAAGAGATTCTACTATGAACCA 57.964 33.333 0.00 0.00 0.00 3.67
806 837 9.092876 CTTTGAAGAGATTCTACTATGAACCAC 57.907 37.037 0.00 0.00 0.00 4.16
807 838 7.113658 TGAAGAGATTCTACTATGAACCACC 57.886 40.000 0.00 0.00 0.00 4.61
808 839 6.897966 TGAAGAGATTCTACTATGAACCACCT 59.102 38.462 0.00 0.00 0.00 4.00
809 840 8.059461 TGAAGAGATTCTACTATGAACCACCTA 58.941 37.037 0.00 0.00 0.00 3.08
810 841 7.826918 AGAGATTCTACTATGAACCACCTAC 57.173 40.000 0.00 0.00 0.00 3.18
811 842 6.487331 AGAGATTCTACTATGAACCACCTACG 59.513 42.308 0.00 0.00 0.00 3.51
812 843 5.535406 AGATTCTACTATGAACCACCTACGG 59.465 44.000 0.00 0.00 0.00 4.02
813 844 4.508551 TCTACTATGAACCACCTACGGA 57.491 45.455 0.00 0.00 0.00 4.69
814 845 4.458397 TCTACTATGAACCACCTACGGAG 58.542 47.826 0.00 0.00 0.00 4.63
815 846 1.755380 ACTATGAACCACCTACGGAGC 59.245 52.381 0.00 0.00 0.00 4.70
816 847 1.754803 CTATGAACCACCTACGGAGCA 59.245 52.381 0.00 0.00 0.00 4.26
817 848 0.981183 ATGAACCACCTACGGAGCAA 59.019 50.000 0.00 0.00 0.00 3.91
818 849 0.759959 TGAACCACCTACGGAGCAAA 59.240 50.000 0.00 0.00 0.00 3.68
819 850 1.141254 TGAACCACCTACGGAGCAAAA 59.859 47.619 0.00 0.00 0.00 2.44
820 851 2.224670 TGAACCACCTACGGAGCAAAAT 60.225 45.455 0.00 0.00 0.00 1.82
821 852 1.821216 ACCACCTACGGAGCAAAATG 58.179 50.000 0.00 0.00 0.00 2.32
822 853 1.349688 ACCACCTACGGAGCAAAATGA 59.650 47.619 0.00 0.00 0.00 2.57
823 854 2.009774 CCACCTACGGAGCAAAATGAG 58.990 52.381 0.00 0.00 0.00 2.90
824 855 2.615493 CCACCTACGGAGCAAAATGAGT 60.615 50.000 0.00 0.00 0.00 3.41
825 856 2.416547 CACCTACGGAGCAAAATGAGTG 59.583 50.000 0.00 0.00 0.00 3.51
826 857 2.301870 ACCTACGGAGCAAAATGAGTGA 59.698 45.455 0.00 0.00 0.00 3.41
827 858 3.244422 ACCTACGGAGCAAAATGAGTGAA 60.244 43.478 0.00 0.00 0.00 3.18
828 859 3.941483 CCTACGGAGCAAAATGAGTGAAT 59.059 43.478 0.00 0.00 0.00 2.57
829 860 4.034510 CCTACGGAGCAAAATGAGTGAATC 59.965 45.833 0.00 0.00 0.00 2.52
830 861 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
831 862 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
832 863 5.431765 ACGGAGCAAAATGAGTGAATCTAT 58.568 37.500 0.00 0.00 0.00 1.98
833 864 6.582636 ACGGAGCAAAATGAGTGAATCTATA 58.417 36.000 0.00 0.00 0.00 1.31
834 865 6.480320 ACGGAGCAAAATGAGTGAATCTATAC 59.520 38.462 0.00 0.00 0.00 1.47
835 866 6.703607 CGGAGCAAAATGAGTGAATCTATACT 59.296 38.462 0.00 0.00 0.00 2.12
836 867 7.095857 CGGAGCAAAATGAGTGAATCTATACTC 60.096 40.741 0.00 0.00 42.77 2.59
837 868 7.930865 GGAGCAAAATGAGTGAATCTATACTCT 59.069 37.037 0.00 0.00 42.86 3.24
838 869 9.973450 GAGCAAAATGAGTGAATCTATACTCTA 57.027 33.333 0.00 0.00 42.86 2.43
859 890 8.031864 ACTCTAAAATGCATCTAGATACATCCG 58.968 37.037 17.09 7.74 0.00 4.18
860 891 7.896811 TCTAAAATGCATCTAGATACATCCGT 58.103 34.615 17.09 9.18 0.00 4.69
861 892 9.020731 TCTAAAATGCATCTAGATACATCCGTA 57.979 33.333 17.09 9.71 0.00 4.02
862 893 9.809096 CTAAAATGCATCTAGATACATCCGTAT 57.191 33.333 17.09 0.85 41.16 3.06
863 894 8.484641 AAAATGCATCTAGATACATCCGTATG 57.515 34.615 17.09 0.00 38.48 2.39
865 896 5.954335 TGCATCTAGATACATCCGTATGTG 58.046 41.667 4.54 0.00 45.99 3.21
866 897 5.105756 TGCATCTAGATACATCCGTATGTGG 60.106 44.000 4.54 0.00 45.99 4.17
867 898 5.105716 GCATCTAGATACATCCGTATGTGGT 60.106 44.000 4.54 0.00 45.99 4.16
868 899 6.556212 CATCTAGATACATCCGTATGTGGTC 58.444 44.000 4.54 2.46 45.99 4.02
869 900 5.008331 TCTAGATACATCCGTATGTGGTCC 58.992 45.833 3.56 0.00 45.99 4.46
870 901 3.572642 AGATACATCCGTATGTGGTCCA 58.427 45.455 3.56 0.00 45.99 4.02
871 902 4.160329 AGATACATCCGTATGTGGTCCAT 58.840 43.478 3.56 0.00 45.99 3.41
872 903 5.330233 AGATACATCCGTATGTGGTCCATA 58.670 41.667 3.56 0.00 45.99 2.74
873 904 5.419155 AGATACATCCGTATGTGGTCCATAG 59.581 44.000 3.56 0.00 45.99 2.23
874 905 3.305720 ACATCCGTATGTGGTCCATAGT 58.694 45.455 0.00 0.00 44.79 2.12
875 906 4.476297 ACATCCGTATGTGGTCCATAGTA 58.524 43.478 0.00 0.00 44.79 1.82
876 907 4.897076 ACATCCGTATGTGGTCCATAGTAA 59.103 41.667 0.00 0.00 44.79 2.24
877 908 5.364446 ACATCCGTATGTGGTCCATAGTAAA 59.636 40.000 0.00 0.00 44.79 2.01
878 909 5.936187 TCCGTATGTGGTCCATAGTAAAA 57.064 39.130 0.00 0.00 36.71 1.52
879 910 6.488769 TCCGTATGTGGTCCATAGTAAAAT 57.511 37.500 0.00 0.00 36.71 1.82
880 911 6.518493 TCCGTATGTGGTCCATAGTAAAATC 58.482 40.000 0.00 0.00 36.71 2.17
881 912 6.325545 TCCGTATGTGGTCCATAGTAAAATCT 59.674 38.462 0.00 0.00 36.71 2.40
882 913 6.645415 CCGTATGTGGTCCATAGTAAAATCTC 59.355 42.308 0.00 0.00 36.71 2.75
883 914 7.434492 CGTATGTGGTCCATAGTAAAATCTCT 58.566 38.462 0.00 0.00 36.71 3.10
884 915 8.573885 CGTATGTGGTCCATAGTAAAATCTCTA 58.426 37.037 0.00 0.00 36.71 2.43
885 916 9.694137 GTATGTGGTCCATAGTAAAATCTCTAC 57.306 37.037 0.00 0.00 36.71 2.59
886 917 7.727578 TGTGGTCCATAGTAAAATCTCTACA 57.272 36.000 0.00 0.00 0.00 2.74
887 918 8.141298 TGTGGTCCATAGTAAAATCTCTACAA 57.859 34.615 0.00 0.00 0.00 2.41
888 919 8.598916 TGTGGTCCATAGTAAAATCTCTACAAA 58.401 33.333 0.00 0.00 0.00 2.83
889 920 9.099454 GTGGTCCATAGTAAAATCTCTACAAAG 57.901 37.037 0.00 0.00 0.00 2.77
890 921 9.042450 TGGTCCATAGTAAAATCTCTACAAAGA 57.958 33.333 0.00 0.00 0.00 2.52
891 922 9.315525 GGTCCATAGTAAAATCTCTACAAAGAC 57.684 37.037 0.00 0.00 0.00 3.01
909 940 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
910 941 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
911 942 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
912 943 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
913 944 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
1082 1118 0.827368 ATCGAGGAGGCCAAGAAGAC 59.173 55.000 5.01 0.00 0.00 3.01
1112 1148 2.342279 CAGGCCGGACGTGAAGAA 59.658 61.111 5.05 0.00 36.20 2.52
1137 1173 3.998672 GTCTTCCCGGTCGGCACA 61.999 66.667 0.00 0.00 0.00 4.57
1138 1174 3.998672 TCTTCCCGGTCGGCACAC 61.999 66.667 0.00 0.00 0.00 3.82
1233 1269 4.340381 GGCTAACTTTGATTGATGCTCCAT 59.660 41.667 0.00 0.00 0.00 3.41
1263 1310 5.368989 TGTGTGTGTGTGTGTTATATTCCA 58.631 37.500 0.00 0.00 0.00 3.53
1306 1359 2.854963 AGTGGCCATGTATGCATACTG 58.145 47.619 31.35 25.25 34.41 2.74
1326 1379 1.880271 CTCCTAGCTATGTCGGTCGA 58.120 55.000 0.00 0.00 0.00 4.20
1336 1389 5.648526 AGCTATGTCGGTCGATATGTAAGAT 59.351 40.000 11.81 0.00 0.00 2.40
1388 1447 0.962356 AAGTTGATCCCAGGCTTGCG 60.962 55.000 0.00 0.00 0.00 4.85
1422 1763 7.763172 TCTTGATCTTTATTTCGCTTCTCTC 57.237 36.000 0.00 0.00 0.00 3.20
1450 1791 9.405587 TGAAACCATTTCAATACGAAAAATCTC 57.594 29.630 1.54 0.00 46.48 2.75
1451 1792 9.405587 GAAACCATTTCAATACGAAAAATCTCA 57.594 29.630 0.00 0.00 46.48 3.27
1452 1793 9.757227 AAACCATTTCAATACGAAAAATCTCAA 57.243 25.926 0.00 0.00 46.48 3.02
1453 1794 9.757227 AACCATTTCAATACGAAAAATCTCAAA 57.243 25.926 0.00 0.00 46.48 2.69
1454 1795 9.927668 ACCATTTCAATACGAAAAATCTCAAAT 57.072 25.926 0.00 0.00 46.48 2.32
1459 1800 9.489393 TTCAATACGAAAAATCTCAAATGATCG 57.511 29.630 0.00 0.00 0.00 3.69
1460 1801 8.878769 TCAATACGAAAAATCTCAAATGATCGA 58.121 29.630 8.36 0.00 0.00 3.59
1461 1802 9.489393 CAATACGAAAAATCTCAAATGATCGAA 57.511 29.630 8.36 0.00 0.00 3.71
1462 1803 9.490663 AATACGAAAAATCTCAAATGATCGAAC 57.509 29.630 8.36 0.00 0.00 3.95
1463 1804 6.898041 ACGAAAAATCTCAAATGATCGAACA 58.102 32.000 0.00 0.00 0.00 3.18
1464 1805 7.530010 ACGAAAAATCTCAAATGATCGAACAT 58.470 30.769 1.78 1.78 0.00 2.71
1465 1806 7.482743 ACGAAAAATCTCAAATGATCGAACATG 59.517 33.333 9.11 0.00 0.00 3.21
1466 1807 7.482743 CGAAAAATCTCAAATGATCGAACATGT 59.517 33.333 9.11 0.00 0.00 3.21
1467 1808 9.132521 GAAAAATCTCAAATGATCGAACATGTT 57.867 29.630 11.78 11.78 0.00 2.71
1468 1809 9.480053 AAAAATCTCAAATGATCGAACATGTTT 57.520 25.926 13.36 0.00 0.00 2.83
1471 1812 9.941664 AATCTCAAATGATCGAACATGTTTATC 57.058 29.630 13.36 17.69 0.00 1.75
1472 1813 8.491331 TCTCAAATGATCGAACATGTTTATCA 57.509 30.769 26.65 26.65 33.13 2.15
1473 1814 8.945057 TCTCAAATGATCGAACATGTTTATCAA 58.055 29.630 27.51 17.08 32.68 2.57
1474 1815 9.726232 CTCAAATGATCGAACATGTTTATCAAT 57.274 29.630 27.51 21.36 32.68 2.57
1478 1819 9.950680 AATGATCGAACATGTTTATCAATTACC 57.049 29.630 27.51 8.45 32.68 2.85
1479 1820 8.499403 TGATCGAACATGTTTATCAATTACCA 57.501 30.769 24.27 9.20 0.00 3.25
1480 1821 8.951243 TGATCGAACATGTTTATCAATTACCAA 58.049 29.630 24.27 8.25 0.00 3.67
1481 1822 9.438291 GATCGAACATGTTTATCAATTACCAAG 57.562 33.333 21.19 0.00 0.00 3.61
1482 1823 8.554835 TCGAACATGTTTATCAATTACCAAGA 57.445 30.769 13.36 0.00 0.00 3.02
1483 1824 9.173021 TCGAACATGTTTATCAATTACCAAGAT 57.827 29.630 13.36 0.00 0.00 2.40
1537 1878 8.611051 AGACTAATTACCCAGACTAATTGACT 57.389 34.615 0.00 0.00 0.00 3.41
1538 1879 9.710818 AGACTAATTACCCAGACTAATTGACTA 57.289 33.333 0.00 0.00 0.00 2.59
1568 1909 8.456904 AATCTCAAATGATTGAACATTGTTCG 57.543 30.769 21.27 7.52 44.64 3.95
1569 1910 6.969366 TCTCAAATGATTGAACATTGTTCGT 58.031 32.000 21.27 14.06 44.64 3.85
1570 1911 7.424803 TCTCAAATGATTGAACATTGTTCGTT 58.575 30.769 21.27 12.84 44.64 3.85
1571 1912 7.920151 TCTCAAATGATTGAACATTGTTCGTTT 59.080 29.630 21.27 11.39 44.64 3.60
1572 1913 8.060020 TCAAATGATTGAACATTGTTCGTTTC 57.940 30.769 21.27 17.41 42.47 2.78
1573 1914 7.704047 TCAAATGATTGAACATTGTTCGTTTCA 59.296 29.630 21.27 21.18 42.47 2.69
1574 1915 8.489559 CAAATGATTGAACATTGTTCGTTTCAT 58.510 29.630 22.69 22.69 39.88 2.57
1575 1916 6.989796 TGATTGAACATTGTTCGTTTCATG 57.010 33.333 21.27 0.00 0.00 3.07
1576 1917 6.502652 TGATTGAACATTGTTCGTTTCATGT 58.497 32.000 21.27 4.44 0.00 3.21
1577 1918 6.417339 TGATTGAACATTGTTCGTTTCATGTG 59.583 34.615 21.27 0.00 0.00 3.21
1578 1919 5.242069 TGAACATTGTTCGTTTCATGTGT 57.758 34.783 21.27 0.00 0.00 3.72
1579 1920 5.033507 TGAACATTGTTCGTTTCATGTGTG 58.966 37.500 21.27 0.00 0.00 3.82
1580 1921 4.630894 ACATTGTTCGTTTCATGTGTGT 57.369 36.364 0.00 0.00 0.00 3.72
1581 1922 4.350346 ACATTGTTCGTTTCATGTGTGTG 58.650 39.130 0.00 0.00 0.00 3.82
1582 1923 4.142491 ACATTGTTCGTTTCATGTGTGTGT 60.142 37.500 0.00 0.00 0.00 3.72
1583 1924 3.397405 TGTTCGTTTCATGTGTGTGTG 57.603 42.857 0.00 0.00 0.00 3.82
1584 1925 2.744741 TGTTCGTTTCATGTGTGTGTGT 59.255 40.909 0.00 0.00 0.00 3.72
1585 1926 3.097910 GTTCGTTTCATGTGTGTGTGTG 58.902 45.455 0.00 0.00 0.00 3.82
1586 1927 2.351455 TCGTTTCATGTGTGTGTGTGT 58.649 42.857 0.00 0.00 0.00 3.72
1587 1928 2.095053 TCGTTTCATGTGTGTGTGTGTG 59.905 45.455 0.00 0.00 0.00 3.82
1588 1929 2.159585 CGTTTCATGTGTGTGTGTGTGT 60.160 45.455 0.00 0.00 0.00 3.72
1589 1930 3.170505 GTTTCATGTGTGTGTGTGTGTG 58.829 45.455 0.00 0.00 0.00 3.82
1590 1931 2.106477 TCATGTGTGTGTGTGTGTGT 57.894 45.000 0.00 0.00 0.00 3.72
1591 1932 1.736681 TCATGTGTGTGTGTGTGTGTG 59.263 47.619 0.00 0.00 0.00 3.82
1592 1933 1.468127 CATGTGTGTGTGTGTGTGTGT 59.532 47.619 0.00 0.00 0.00 3.72
1593 1934 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1594 1935 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1595 1936 1.265635 GTGTGTGTGTGTGTGTGTGTT 59.734 47.619 0.00 0.00 0.00 3.32
1596 1937 2.480802 GTGTGTGTGTGTGTGTGTGTTA 59.519 45.455 0.00 0.00 0.00 2.41
1597 1938 3.126171 GTGTGTGTGTGTGTGTGTGTTAT 59.874 43.478 0.00 0.00 0.00 1.89
1598 1939 4.330347 GTGTGTGTGTGTGTGTGTGTTATA 59.670 41.667 0.00 0.00 0.00 0.98
1599 1940 5.007234 GTGTGTGTGTGTGTGTGTGTTATAT 59.993 40.000 0.00 0.00 0.00 0.86
1600 1941 5.586643 TGTGTGTGTGTGTGTGTGTTATATT 59.413 36.000 0.00 0.00 0.00 1.28
1601 1942 6.133392 GTGTGTGTGTGTGTGTGTTATATTC 58.867 40.000 0.00 0.00 0.00 1.75
1602 1943 5.237561 TGTGTGTGTGTGTGTGTTATATTCC 59.762 40.000 0.00 0.00 0.00 3.01
1603 1944 5.468746 GTGTGTGTGTGTGTGTTATATTCCT 59.531 40.000 0.00 0.00 0.00 3.36
1604 1945 5.468409 TGTGTGTGTGTGTGTTATATTCCTG 59.532 40.000 0.00 0.00 0.00 3.86
1605 1946 5.699001 GTGTGTGTGTGTGTTATATTCCTGA 59.301 40.000 0.00 0.00 0.00 3.86
1606 1947 6.203915 GTGTGTGTGTGTGTTATATTCCTGAA 59.796 38.462 0.00 0.00 0.00 3.02
1607 1948 6.939730 TGTGTGTGTGTGTTATATTCCTGAAT 59.060 34.615 0.00 0.00 34.93 2.57
1608 1949 8.097662 TGTGTGTGTGTGTTATATTCCTGAATA 58.902 33.333 2.29 2.29 37.64 1.75
1609 1950 8.941977 GTGTGTGTGTGTTATATTCCTGAATAA 58.058 33.333 3.86 0.00 36.90 1.40
1610 1951 9.508642 TGTGTGTGTGTTATATTCCTGAATAAA 57.491 29.630 3.86 0.00 36.90 1.40
1611 1952 9.769093 GTGTGTGTGTTATATTCCTGAATAAAC 57.231 33.333 3.86 9.51 36.90 2.01
1612 1953 8.952278 TGTGTGTGTTATATTCCTGAATAAACC 58.048 33.333 3.86 5.66 36.90 3.27
1613 1954 8.952278 GTGTGTGTTATATTCCTGAATAAACCA 58.048 33.333 3.86 7.38 36.90 3.67
1614 1955 9.693739 TGTGTGTTATATTCCTGAATAAACCAT 57.306 29.630 3.86 0.00 36.90 3.55
1622 1963 9.950496 ATATTCCTGAATAAACCATAGCTAGTG 57.050 33.333 0.00 0.00 36.90 2.74
1623 1964 7.432148 TTCCTGAATAAACCATAGCTAGTGA 57.568 36.000 0.00 0.00 0.00 3.41
1624 1965 7.055667 TCCTGAATAAACCATAGCTAGTGAG 57.944 40.000 0.00 0.00 0.00 3.51
1625 1966 6.042093 TCCTGAATAAACCATAGCTAGTGAGG 59.958 42.308 0.00 1.24 0.00 3.86
1626 1967 6.174720 TGAATAAACCATAGCTAGTGAGGG 57.825 41.667 0.00 0.00 0.00 4.30
1627 1968 5.665812 TGAATAAACCATAGCTAGTGAGGGT 59.334 40.000 0.00 0.00 0.00 4.34
1628 1969 3.914426 AAACCATAGCTAGTGAGGGTG 57.086 47.619 0.00 0.00 0.00 4.61
1629 1970 2.552093 ACCATAGCTAGTGAGGGTGT 57.448 50.000 0.00 0.00 0.00 4.16
1630 1971 3.682592 ACCATAGCTAGTGAGGGTGTA 57.317 47.619 0.00 0.00 0.00 2.90
1631 1972 4.200447 ACCATAGCTAGTGAGGGTGTAT 57.800 45.455 0.00 0.00 0.00 2.29
1632 1973 3.898123 ACCATAGCTAGTGAGGGTGTATG 59.102 47.826 0.00 0.00 0.00 2.39
1633 1974 3.898123 CCATAGCTAGTGAGGGTGTATGT 59.102 47.826 0.00 0.00 0.00 2.29
1634 1975 5.077564 CCATAGCTAGTGAGGGTGTATGTA 58.922 45.833 0.00 0.00 0.00 2.29
1635 1976 5.047943 CCATAGCTAGTGAGGGTGTATGTAC 60.048 48.000 0.00 0.00 0.00 2.90
1636 1977 3.977312 AGCTAGTGAGGGTGTATGTACA 58.023 45.455 0.00 0.00 0.00 2.90
1637 1978 4.350245 AGCTAGTGAGGGTGTATGTACAA 58.650 43.478 0.00 0.00 38.04 2.41
1638 1979 4.962995 AGCTAGTGAGGGTGTATGTACAAT 59.037 41.667 0.00 0.00 38.04 2.71
1639 1980 6.134055 AGCTAGTGAGGGTGTATGTACAATA 58.866 40.000 0.00 0.00 38.04 1.90
1640 1981 6.040616 AGCTAGTGAGGGTGTATGTACAATAC 59.959 42.308 0.00 4.23 38.04 1.89
1641 1982 6.040616 GCTAGTGAGGGTGTATGTACAATACT 59.959 42.308 0.00 0.00 38.04 2.12
1642 1983 6.466885 AGTGAGGGTGTATGTACAATACTC 57.533 41.667 0.00 0.00 38.04 2.59
1643 1984 5.363005 AGTGAGGGTGTATGTACAATACTCC 59.637 44.000 18.43 18.43 38.04 3.85
1644 1985 5.363005 GTGAGGGTGTATGTACAATACTCCT 59.637 44.000 22.04 20.22 38.04 3.69
1645 1986 6.548622 GTGAGGGTGTATGTACAATACTCCTA 59.451 42.308 22.04 13.65 38.04 2.94
1646 1987 6.776116 TGAGGGTGTATGTACAATACTCCTAG 59.224 42.308 22.04 0.00 38.04 3.02
1647 1988 5.539193 AGGGTGTATGTACAATACTCCTAGC 59.461 44.000 22.04 13.52 38.04 3.42
1648 1989 5.539193 GGGTGTATGTACAATACTCCTAGCT 59.461 44.000 22.04 0.00 38.04 3.32
1649 1990 6.718454 GGGTGTATGTACAATACTCCTAGCTA 59.282 42.308 22.04 0.00 38.04 3.32
1650 1991 7.396623 GGGTGTATGTACAATACTCCTAGCTAT 59.603 40.741 22.04 0.88 38.04 2.97
1651 1992 8.244802 GGTGTATGTACAATACTCCTAGCTATG 58.755 40.741 18.91 0.00 38.04 2.23
1652 1993 8.794553 GTGTATGTACAATACTCCTAGCTATGT 58.205 37.037 0.00 0.00 38.04 2.29
1653 1994 9.011095 TGTATGTACAATACTCCTAGCTATGTC 57.989 37.037 0.00 0.00 32.40 3.06
1654 1995 6.555812 TGTACAATACTCCTAGCTATGTCG 57.444 41.667 0.00 0.00 0.00 4.35
1655 1996 6.293698 TGTACAATACTCCTAGCTATGTCGA 58.706 40.000 0.00 0.00 0.00 4.20
1656 1997 6.940867 TGTACAATACTCCTAGCTATGTCGAT 59.059 38.462 0.00 0.00 0.00 3.59
1657 1998 6.503589 ACAATACTCCTAGCTATGTCGATC 57.496 41.667 0.00 0.00 0.00 3.69
1658 1999 5.122554 ACAATACTCCTAGCTATGTCGATCG 59.877 44.000 9.36 9.36 0.00 3.69
1659 2000 1.807742 ACTCCTAGCTATGTCGATCGC 59.192 52.381 11.09 6.41 0.00 4.58
1660 2001 1.131504 CTCCTAGCTATGTCGATCGCC 59.868 57.143 11.09 0.00 0.00 5.54
1661 2002 0.881796 CCTAGCTATGTCGATCGCCA 59.118 55.000 11.09 5.53 0.00 5.69
1662 2003 1.474478 CCTAGCTATGTCGATCGCCAT 59.526 52.381 16.58 16.58 0.00 4.40
1663 2004 2.524034 CTAGCTATGTCGATCGCCATG 58.476 52.381 21.03 11.97 0.00 3.66
1664 2005 0.676184 AGCTATGTCGATCGCCATGT 59.324 50.000 21.03 3.50 0.00 3.21
1665 2006 1.886542 AGCTATGTCGATCGCCATGTA 59.113 47.619 21.03 1.66 0.00 2.29
1666 2007 1.986378 GCTATGTCGATCGCCATGTAC 59.014 52.381 21.03 8.55 0.00 2.90
1667 2008 2.242564 CTATGTCGATCGCCATGTACG 58.757 52.381 21.03 3.93 0.00 3.67
1668 2009 0.666374 ATGTCGATCGCCATGTACGA 59.334 50.000 11.36 10.09 44.75 3.43
1669 2010 0.028902 TGTCGATCGCCATGTACGAG 59.971 55.000 11.09 2.29 43.74 4.18
1670 2011 0.029035 GTCGATCGCCATGTACGAGT 59.971 55.000 11.09 3.16 43.74 4.18
1671 2012 0.736636 TCGATCGCCATGTACGAGTT 59.263 50.000 11.09 0.00 43.74 3.01
1672 2013 1.941975 TCGATCGCCATGTACGAGTTA 59.058 47.619 11.09 0.00 43.74 2.24
1673 2014 2.355444 TCGATCGCCATGTACGAGTTAA 59.645 45.455 11.09 0.00 43.74 2.01
1674 2015 3.004002 TCGATCGCCATGTACGAGTTAAT 59.996 43.478 11.09 0.00 43.74 1.40
1675 2016 4.213906 TCGATCGCCATGTACGAGTTAATA 59.786 41.667 11.09 0.00 43.74 0.98
1676 2017 4.913345 CGATCGCCATGTACGAGTTAATAA 59.087 41.667 0.26 0.00 43.74 1.40
1677 2018 5.571741 CGATCGCCATGTACGAGTTAATAAT 59.428 40.000 0.26 0.00 43.74 1.28
1678 2019 6.089016 CGATCGCCATGTACGAGTTAATAATT 59.911 38.462 0.26 0.00 43.74 1.40
1679 2020 7.271868 CGATCGCCATGTACGAGTTAATAATTA 59.728 37.037 0.26 0.00 43.74 1.40
1680 2021 8.821147 ATCGCCATGTACGAGTTAATAATTAA 57.179 30.769 12.75 0.00 43.74 1.40
1681 2022 8.645730 TCGCCATGTACGAGTTAATAATTAAA 57.354 30.769 4.13 0.00 33.96 1.52
1682 2023 8.757789 TCGCCATGTACGAGTTAATAATTAAAG 58.242 33.333 4.13 0.00 33.96 1.85
1683 2024 8.545420 CGCCATGTACGAGTTAATAATTAAAGT 58.455 33.333 0.00 0.00 0.00 2.66
1691 2032 8.875803 ACGAGTTAATAATTAAAGTTGATCGCA 58.124 29.630 0.00 0.00 0.00 5.10
1692 2033 9.358123 CGAGTTAATAATTAAAGTTGATCGCAG 57.642 33.333 0.00 0.00 0.00 5.18
1693 2034 9.651718 GAGTTAATAATTAAAGTTGATCGCAGG 57.348 33.333 0.00 0.00 0.00 4.85
1694 2035 8.129211 AGTTAATAATTAAAGTTGATCGCAGGC 58.871 33.333 0.00 0.00 0.00 4.85
1695 2036 6.699575 AATAATTAAAGTTGATCGCAGGCT 57.300 33.333 0.00 0.00 0.00 4.58
1696 2037 6.699575 ATAATTAAAGTTGATCGCAGGCTT 57.300 33.333 0.00 0.00 0.00 4.35
1697 2038 3.829886 TTAAAGTTGATCGCAGGCTTG 57.170 42.857 0.00 0.00 0.00 4.01
1713 2054 3.351020 GCTTGCTGCCTTGATATCTTG 57.649 47.619 3.98 0.00 35.15 3.02
1714 2055 2.947652 GCTTGCTGCCTTGATATCTTGA 59.052 45.455 3.98 0.00 35.15 3.02
1715 2056 3.568853 GCTTGCTGCCTTGATATCTTGAT 59.431 43.478 3.98 0.00 35.15 2.57
1716 2057 4.320348 GCTTGCTGCCTTGATATCTTGATC 60.320 45.833 3.98 0.00 35.15 2.92
1717 2058 4.701651 TGCTGCCTTGATATCTTGATCT 57.298 40.909 3.98 0.00 0.00 2.75
1718 2059 5.045012 TGCTGCCTTGATATCTTGATCTT 57.955 39.130 3.98 0.00 0.00 2.40
1719 2060 6.178607 TGCTGCCTTGATATCTTGATCTTA 57.821 37.500 3.98 0.00 0.00 2.10
1720 2061 6.594744 TGCTGCCTTGATATCTTGATCTTAA 58.405 36.000 3.98 0.00 0.00 1.85
1721 2062 7.229308 TGCTGCCTTGATATCTTGATCTTAAT 58.771 34.615 3.98 0.00 0.00 1.40
1722 2063 7.722728 TGCTGCCTTGATATCTTGATCTTAATT 59.277 33.333 3.98 0.00 0.00 1.40
1723 2064 8.574737 GCTGCCTTGATATCTTGATCTTAATTT 58.425 33.333 3.98 0.00 0.00 1.82
1725 2066 9.631257 TGCCTTGATATCTTGATCTTAATTTCA 57.369 29.630 3.98 0.00 0.00 2.69
1747 2088 7.912949 TCATTTCTCTGTTGAAACAATTTCG 57.087 32.000 0.00 0.00 42.55 3.46
1748 2089 7.702386 TCATTTCTCTGTTGAAACAATTTCGA 58.298 30.769 0.00 0.00 42.55 3.71
1749 2090 8.352201 TCATTTCTCTGTTGAAACAATTTCGAT 58.648 29.630 0.00 0.00 42.55 3.59
1750 2091 9.611284 CATTTCTCTGTTGAAACAATTTCGATA 57.389 29.630 0.00 0.00 42.55 2.92
1751 2092 9.612620 ATTTCTCTGTTGAAACAATTTCGATAC 57.387 29.630 0.00 0.00 42.55 2.24
1752 2093 6.817396 TCTCTGTTGAAACAATTTCGATACG 58.183 36.000 0.00 0.00 42.55 3.06
1753 2094 6.643360 TCTCTGTTGAAACAATTTCGATACGA 59.357 34.615 0.00 0.00 42.55 3.43
1754 2095 7.170151 TCTCTGTTGAAACAATTTCGATACGAA 59.830 33.333 2.48 2.48 42.55 3.85
1755 2096 7.631822 TCTGTTGAAACAATTTCGATACGAAA 58.368 30.769 18.71 18.71 45.01 3.46
1756 2097 8.123575 TCTGTTGAAACAATTTCGATACGAAAA 58.876 29.630 19.91 7.15 43.96 2.29
1757 2098 8.616377 TGTTGAAACAATTTCGATACGAAAAA 57.384 26.923 19.91 8.03 44.79 1.94
1806 2174 8.528044 TCAATTACCAGGACCAAAAATATACC 57.472 34.615 0.00 0.00 0.00 2.73
1926 2296 1.520666 GTGGGGTAGCGCACATACT 59.479 57.895 30.30 0.00 0.00 2.12
1935 2305 4.261656 GGTAGCGCACATACTCTGATTACT 60.262 45.833 11.47 0.00 0.00 2.24
1939 2309 3.134458 GCACATACTCTGATTACTGGGC 58.866 50.000 0.00 0.00 0.00 5.36
2045 2415 9.853555 CACAAATTTTACTGAGGCATGTTTATA 57.146 29.630 0.00 0.00 0.00 0.98
2159 2532 5.673337 TGCCATTTAAGATATCTTCACGC 57.327 39.130 21.17 15.83 37.40 5.34
2164 2537 8.289618 GCCATTTAAGATATCTTCACGCATTTA 58.710 33.333 21.17 0.00 37.40 1.40
2197 2570 8.682016 GTTCATCTATTTTGAAAAGTGTTCACG 58.318 33.333 0.00 0.00 35.03 4.35
2199 2572 9.047371 TCATCTATTTTGAAAAGTGTTCACGTA 57.953 29.630 0.00 0.00 0.00 3.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.560636 AACACCTATAGCCATGGTCAC 57.439 47.619 14.67 0.00 30.72 3.67
1 2 4.584638 AAAACACCTATAGCCATGGTCA 57.415 40.909 14.67 1.21 30.72 4.02
2 3 5.925509 TCTAAAACACCTATAGCCATGGTC 58.074 41.667 14.67 5.80 30.72 4.02
3 4 5.968676 TCTAAAACACCTATAGCCATGGT 57.031 39.130 14.67 2.69 33.87 3.55
4 5 6.431234 GGATTCTAAAACACCTATAGCCATGG 59.569 42.308 7.63 7.63 0.00 3.66
5 6 6.147821 CGGATTCTAAAACACCTATAGCCATG 59.852 42.308 0.00 0.00 0.00 3.66
6 7 6.231211 CGGATTCTAAAACACCTATAGCCAT 58.769 40.000 0.00 0.00 0.00 4.40
7 8 5.454187 CCGGATTCTAAAACACCTATAGCCA 60.454 44.000 0.00 0.00 0.00 4.75
8 9 4.995487 CCGGATTCTAAAACACCTATAGCC 59.005 45.833 0.00 0.00 0.00 3.93
9 10 5.695363 GTCCGGATTCTAAAACACCTATAGC 59.305 44.000 7.81 0.00 0.00 2.97
10 11 5.919141 CGTCCGGATTCTAAAACACCTATAG 59.081 44.000 7.81 0.00 0.00 1.31
11 12 5.360714 ACGTCCGGATTCTAAAACACCTATA 59.639 40.000 7.81 0.00 0.00 1.31
12 13 4.161001 ACGTCCGGATTCTAAAACACCTAT 59.839 41.667 7.81 0.00 0.00 2.57
13 14 3.511146 ACGTCCGGATTCTAAAACACCTA 59.489 43.478 7.81 0.00 0.00 3.08
14 15 2.301009 ACGTCCGGATTCTAAAACACCT 59.699 45.455 7.81 0.00 0.00 4.00
15 16 2.414138 CACGTCCGGATTCTAAAACACC 59.586 50.000 7.81 0.00 0.00 4.16
16 17 2.159747 GCACGTCCGGATTCTAAAACAC 60.160 50.000 7.81 0.00 0.00 3.32
17 18 2.070783 GCACGTCCGGATTCTAAAACA 58.929 47.619 7.81 0.00 0.00 2.83
18 19 1.395954 GGCACGTCCGGATTCTAAAAC 59.604 52.381 7.81 0.00 0.00 2.43
19 20 1.276989 AGGCACGTCCGGATTCTAAAA 59.723 47.619 7.81 0.00 40.77 1.52
20 21 0.899720 AGGCACGTCCGGATTCTAAA 59.100 50.000 7.81 0.00 40.77 1.85
21 22 1.679680 CTAGGCACGTCCGGATTCTAA 59.320 52.381 7.81 0.00 40.77 2.10
22 23 1.315690 CTAGGCACGTCCGGATTCTA 58.684 55.000 7.81 4.85 40.77 2.10
23 24 0.683504 ACTAGGCACGTCCGGATTCT 60.684 55.000 7.81 3.84 40.77 2.40
24 25 1.027357 TACTAGGCACGTCCGGATTC 58.973 55.000 7.81 0.00 40.77 2.52
25 26 1.700955 ATACTAGGCACGTCCGGATT 58.299 50.000 7.81 0.00 40.77 3.01
26 27 1.700955 AATACTAGGCACGTCCGGAT 58.299 50.000 7.81 0.00 40.77 4.18
27 28 1.477553 AAATACTAGGCACGTCCGGA 58.522 50.000 0.00 0.00 40.77 5.14
28 29 2.304751 AAAATACTAGGCACGTCCGG 57.695 50.000 0.00 0.00 40.77 5.14
47 48 3.998341 GCCATGGTCACGTACTAGAAAAA 59.002 43.478 14.67 0.00 0.00 1.94
48 49 3.592059 GCCATGGTCACGTACTAGAAAA 58.408 45.455 14.67 0.00 0.00 2.29
49 50 2.093869 GGCCATGGTCACGTACTAGAAA 60.094 50.000 12.68 0.00 0.00 2.52
50 51 1.479323 GGCCATGGTCACGTACTAGAA 59.521 52.381 12.68 0.00 0.00 2.10
51 52 1.108776 GGCCATGGTCACGTACTAGA 58.891 55.000 12.68 0.00 0.00 2.43
52 53 0.821517 TGGCCATGGTCACGTACTAG 59.178 55.000 17.02 0.00 0.00 2.57
53 54 1.491668 ATGGCCATGGTCACGTACTA 58.508 50.000 24.12 0.00 30.16 1.82
54 55 1.138266 GTATGGCCATGGTCACGTACT 59.862 52.381 29.04 8.07 30.16 2.73
55 56 1.578583 GTATGGCCATGGTCACGTAC 58.421 55.000 29.04 17.55 30.16 3.67
56 57 0.103390 CGTATGGCCATGGTCACGTA 59.897 55.000 29.04 8.59 30.16 3.57
57 58 1.153449 CGTATGGCCATGGTCACGT 60.153 57.895 29.04 9.80 30.16 4.49
58 59 1.153449 ACGTATGGCCATGGTCACG 60.153 57.895 28.68 28.68 30.16 4.35
59 60 0.392461 ACACGTATGGCCATGGTCAC 60.392 55.000 29.04 16.97 30.16 3.67
60 61 0.107897 GACACGTATGGCCATGGTCA 60.108 55.000 29.04 23.83 0.00 4.02
61 62 0.107897 TGACACGTATGGCCATGGTC 60.108 55.000 29.04 25.65 29.67 4.02
62 63 0.546122 ATGACACGTATGGCCATGGT 59.454 50.000 29.04 21.81 29.67 3.55
63 64 0.946528 CATGACACGTATGGCCATGG 59.053 55.000 29.04 21.14 37.36 3.66
64 65 1.331447 CACATGACACGTATGGCCATG 59.669 52.381 29.04 15.73 42.20 3.66
65 66 1.065491 ACACATGACACGTATGGCCAT 60.065 47.619 24.45 24.45 29.67 4.40
66 67 0.323302 ACACATGACACGTATGGCCA 59.677 50.000 8.56 8.56 29.67 5.36
67 68 1.931172 GTACACATGACACGTATGGCC 59.069 52.381 0.00 0.00 29.67 5.36
68 69 1.931172 GGTACACATGACACGTATGGC 59.069 52.381 0.00 0.00 0.00 4.40
69 70 3.520290 AGGTACACATGACACGTATGG 57.480 47.619 0.00 0.00 0.00 2.74
70 71 8.812147 AATATTAGGTACACATGACACGTATG 57.188 34.615 0.00 0.00 0.00 2.39
71 72 8.857098 AGAATATTAGGTACACATGACACGTAT 58.143 33.333 0.00 0.00 0.00 3.06
72 73 8.229253 AGAATATTAGGTACACATGACACGTA 57.771 34.615 0.00 0.00 0.00 3.57
73 74 7.108841 AGAATATTAGGTACACATGACACGT 57.891 36.000 0.00 0.00 0.00 4.49
74 75 9.692749 ATTAGAATATTAGGTACACATGACACG 57.307 33.333 0.00 0.00 0.00 4.49
93 94 9.444600 AAAGGTTACACACGACAATATTAGAAT 57.555 29.630 0.00 0.00 0.00 2.40
94 95 8.836268 AAAGGTTACACACGACAATATTAGAA 57.164 30.769 0.00 0.00 0.00 2.10
95 96 8.836268 AAAAGGTTACACACGACAATATTAGA 57.164 30.769 0.00 0.00 0.00 2.10
96 97 8.173130 GGAAAAGGTTACACACGACAATATTAG 58.827 37.037 0.00 0.00 0.00 1.73
97 98 7.660617 TGGAAAAGGTTACACACGACAATATTA 59.339 33.333 0.00 0.00 0.00 0.98
98 99 6.487331 TGGAAAAGGTTACACACGACAATATT 59.513 34.615 0.00 0.00 0.00 1.28
99 100 5.998981 TGGAAAAGGTTACACACGACAATAT 59.001 36.000 0.00 0.00 0.00 1.28
100 101 5.366460 TGGAAAAGGTTACACACGACAATA 58.634 37.500 0.00 0.00 0.00 1.90
101 102 4.200874 TGGAAAAGGTTACACACGACAAT 58.799 39.130 0.00 0.00 0.00 2.71
102 103 3.607741 TGGAAAAGGTTACACACGACAA 58.392 40.909 0.00 0.00 0.00 3.18
103 104 3.263489 TGGAAAAGGTTACACACGACA 57.737 42.857 0.00 0.00 0.00 4.35
104 105 4.619437 TTTGGAAAAGGTTACACACGAC 57.381 40.909 0.00 0.00 0.00 4.34
105 106 5.640189 TTTTTGGAAAAGGTTACACACGA 57.360 34.783 0.00 0.00 0.00 4.35
129 130 6.803154 TTGTTTTGTCCCGTTTTGATTTTT 57.197 29.167 0.00 0.00 0.00 1.94
130 131 6.428465 ACTTTGTTTTGTCCCGTTTTGATTTT 59.572 30.769 0.00 0.00 0.00 1.82
131 132 5.935206 ACTTTGTTTTGTCCCGTTTTGATTT 59.065 32.000 0.00 0.00 0.00 2.17
132 133 5.350091 CACTTTGTTTTGTCCCGTTTTGATT 59.650 36.000 0.00 0.00 0.00 2.57
133 134 4.867608 CACTTTGTTTTGTCCCGTTTTGAT 59.132 37.500 0.00 0.00 0.00 2.57
134 135 4.238514 CACTTTGTTTTGTCCCGTTTTGA 58.761 39.130 0.00 0.00 0.00 2.69
135 136 3.369451 CCACTTTGTTTTGTCCCGTTTTG 59.631 43.478 0.00 0.00 0.00 2.44
136 137 3.258622 TCCACTTTGTTTTGTCCCGTTTT 59.741 39.130 0.00 0.00 0.00 2.43
137 138 2.826725 TCCACTTTGTTTTGTCCCGTTT 59.173 40.909 0.00 0.00 0.00 3.60
138 139 2.448453 TCCACTTTGTTTTGTCCCGTT 58.552 42.857 0.00 0.00 0.00 4.44
139 140 2.131776 TCCACTTTGTTTTGTCCCGT 57.868 45.000 0.00 0.00 0.00 5.28
140 141 2.480587 GGTTCCACTTTGTTTTGTCCCG 60.481 50.000 0.00 0.00 0.00 5.14
141 142 2.498078 TGGTTCCACTTTGTTTTGTCCC 59.502 45.455 0.00 0.00 0.00 4.46
142 143 3.878160 TGGTTCCACTTTGTTTTGTCC 57.122 42.857 0.00 0.00 0.00 4.02
143 144 4.390603 GGTTTGGTTCCACTTTGTTTTGTC 59.609 41.667 0.00 0.00 0.00 3.18
144 145 4.202367 TGGTTTGGTTCCACTTTGTTTTGT 60.202 37.500 0.00 0.00 0.00 2.83
145 146 4.319177 TGGTTTGGTTCCACTTTGTTTTG 58.681 39.130 0.00 0.00 0.00 2.44
146 147 4.625607 TGGTTTGGTTCCACTTTGTTTT 57.374 36.364 0.00 0.00 0.00 2.43
147 148 4.284746 TCTTGGTTTGGTTCCACTTTGTTT 59.715 37.500 0.00 0.00 34.45 2.83
148 149 3.835395 TCTTGGTTTGGTTCCACTTTGTT 59.165 39.130 0.00 0.00 34.45 2.83
149 150 3.436243 TCTTGGTTTGGTTCCACTTTGT 58.564 40.909 0.00 0.00 34.45 2.83
150 151 4.464069 TTCTTGGTTTGGTTCCACTTTG 57.536 40.909 0.00 0.00 34.45 2.77
151 152 6.782494 AGATATTCTTGGTTTGGTTCCACTTT 59.218 34.615 0.00 0.00 34.45 2.66
152 153 6.314917 AGATATTCTTGGTTTGGTTCCACTT 58.685 36.000 0.00 0.00 34.45 3.16
153 154 5.892348 AGATATTCTTGGTTTGGTTCCACT 58.108 37.500 0.00 0.00 34.45 4.00
154 155 7.881775 ATAGATATTCTTGGTTTGGTTCCAC 57.118 36.000 0.00 0.00 34.45 4.02
155 156 7.559897 GGAATAGATATTCTTGGTTTGGTTCCA 59.440 37.037 11.35 0.00 41.33 3.53
156 157 7.014326 GGGAATAGATATTCTTGGTTTGGTTCC 59.986 40.741 11.35 0.00 41.33 3.62
157 158 7.780271 AGGGAATAGATATTCTTGGTTTGGTTC 59.220 37.037 11.35 0.00 41.33 3.62
158 159 7.652554 AGGGAATAGATATTCTTGGTTTGGTT 58.347 34.615 11.35 0.00 41.33 3.67
159 160 7.226059 AGGGAATAGATATTCTTGGTTTGGT 57.774 36.000 11.35 0.00 41.33 3.67
160 161 9.640952 TTAAGGGAATAGATATTCTTGGTTTGG 57.359 33.333 11.35 0.00 41.33 3.28
197 198 8.693625 GCCAACTAGTAGTCTCCTTTAAATCTA 58.306 37.037 2.58 0.00 0.00 1.98
198 199 7.364851 GGCCAACTAGTAGTCTCCTTTAAATCT 60.365 40.741 2.58 0.00 0.00 2.40
199 200 6.762187 GGCCAACTAGTAGTCTCCTTTAAATC 59.238 42.308 2.58 0.00 0.00 2.17
200 201 6.444171 AGGCCAACTAGTAGTCTCCTTTAAAT 59.556 38.462 5.01 0.00 0.00 1.40
201 202 5.783875 AGGCCAACTAGTAGTCTCCTTTAAA 59.216 40.000 5.01 0.00 0.00 1.52
202 203 5.187186 CAGGCCAACTAGTAGTCTCCTTTAA 59.813 44.000 5.01 0.00 0.00 1.52
203 204 4.710375 CAGGCCAACTAGTAGTCTCCTTTA 59.290 45.833 5.01 0.00 0.00 1.85
204 205 3.515901 CAGGCCAACTAGTAGTCTCCTTT 59.484 47.826 5.01 0.00 0.00 3.11
205 206 3.100671 CAGGCCAACTAGTAGTCTCCTT 58.899 50.000 5.01 0.00 0.00 3.36
206 207 2.043252 ACAGGCCAACTAGTAGTCTCCT 59.957 50.000 5.01 7.58 0.00 3.69
207 208 2.427812 GACAGGCCAACTAGTAGTCTCC 59.572 54.545 5.01 5.43 0.00 3.71
230 231 7.584122 TCGCTTAAGATGTACTCTAGGAATT 57.416 36.000 6.67 0.00 32.41 2.17
235 236 7.254227 AGACTTCGCTTAAGATGTACTCTAG 57.746 40.000 6.67 0.00 38.67 2.43
289 299 7.786030 ACTAGCTTATTCACTCTCAGCATAAA 58.214 34.615 0.00 0.00 32.58 1.40
294 304 5.255710 TGACTAGCTTATTCACTCTCAGC 57.744 43.478 0.00 0.00 0.00 4.26
327 337 4.611943 TGATAGCTAAGCAACAGATCGAC 58.388 43.478 0.00 0.00 0.00 4.20
427 437 1.584724 AGGTTGATAGTGAGGGGTGG 58.415 55.000 0.00 0.00 0.00 4.61
429 439 3.974642 GGATAAGGTTGATAGTGAGGGGT 59.025 47.826 0.00 0.00 0.00 4.95
430 440 4.235372 AGGATAAGGTTGATAGTGAGGGG 58.765 47.826 0.00 0.00 0.00 4.79
432 442 4.901849 TGGAGGATAAGGTTGATAGTGAGG 59.098 45.833 0.00 0.00 0.00 3.86
437 447 8.651389 TGAAATAGTGGAGGATAAGGTTGATAG 58.349 37.037 0.00 0.00 0.00 2.08
438 448 8.561536 TGAAATAGTGGAGGATAAGGTTGATA 57.438 34.615 0.00 0.00 0.00 2.15
497 514 7.358066 GCTGTACGTATTTGACTATAGCACTA 58.642 38.462 0.00 0.00 31.90 2.74
501 518 5.770417 AGGCTGTACGTATTTGACTATAGC 58.230 41.667 0.00 0.00 31.36 2.97
647 676 5.404366 TGTGTTGTACTACTTGATTTCGCTC 59.596 40.000 8.88 0.00 0.00 5.03
702 731 0.667792 GCCTCAGACTGGTGAACGAC 60.668 60.000 1.81 0.00 0.00 4.34
707 736 0.962855 CTCGAGCCTCAGACTGGTGA 60.963 60.000 0.00 0.00 0.00 4.02
708 737 0.962855 TCTCGAGCCTCAGACTGGTG 60.963 60.000 7.81 0.00 0.00 4.17
709 738 0.679640 CTCTCGAGCCTCAGACTGGT 60.680 60.000 7.81 0.00 0.00 4.00
713 742 1.138671 GCACTCTCGAGCCTCAGAC 59.861 63.158 7.81 0.00 0.00 3.51
714 743 2.402572 CGCACTCTCGAGCCTCAGA 61.403 63.158 7.81 0.00 0.00 3.27
715 744 2.101965 CGCACTCTCGAGCCTCAG 59.898 66.667 7.81 2.03 0.00 3.35
716 745 2.673341 ACGCACTCTCGAGCCTCA 60.673 61.111 7.81 0.00 0.00 3.86
740 771 4.081586 GGAGGGAGTACTTACCTGTTGAAG 60.082 50.000 20.89 0.00 34.02 3.02
754 785 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
757 788 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
758 789 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
759 790 8.202137 TCAAAGACTTATATTTAGGAACGGAGG 58.798 37.037 0.00 0.00 0.00 4.30
760 791 9.595823 TTCAAAGACTTATATTTAGGAACGGAG 57.404 33.333 0.00 0.00 0.00 4.63
761 792 9.595823 CTTCAAAGACTTATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
762 793 9.595823 TCTTCAAAGACTTATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
778 809 9.308318 GGTTCATAGTAGAATCTCTTCAAAGAC 57.692 37.037 0.00 0.00 33.56 3.01
779 810 9.035890 TGGTTCATAGTAGAATCTCTTCAAAGA 57.964 33.333 0.00 0.00 33.56 2.52
780 811 9.092876 GTGGTTCATAGTAGAATCTCTTCAAAG 57.907 37.037 0.00 0.00 33.56 2.77
781 812 8.041323 GGTGGTTCATAGTAGAATCTCTTCAAA 58.959 37.037 0.00 0.00 33.56 2.69
782 813 7.400339 AGGTGGTTCATAGTAGAATCTCTTCAA 59.600 37.037 0.00 0.00 33.56 2.69
783 814 6.897966 AGGTGGTTCATAGTAGAATCTCTTCA 59.102 38.462 0.00 0.00 33.56 3.02
784 815 7.354751 AGGTGGTTCATAGTAGAATCTCTTC 57.645 40.000 0.00 0.00 29.96 2.87
785 816 7.013464 CGTAGGTGGTTCATAGTAGAATCTCTT 59.987 40.741 0.00 0.00 29.96 2.85
786 817 6.487331 CGTAGGTGGTTCATAGTAGAATCTCT 59.513 42.308 0.00 0.00 29.96 3.10
787 818 6.670233 CGTAGGTGGTTCATAGTAGAATCTC 58.330 44.000 0.00 0.00 29.96 2.75
788 819 6.636562 CGTAGGTGGTTCATAGTAGAATCT 57.363 41.667 0.00 0.00 29.96 2.40
807 838 4.872691 AGATTCACTCATTTTGCTCCGTAG 59.127 41.667 0.00 0.00 0.00 3.51
808 839 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
809 840 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
810 841 5.998454 ATAGATTCACTCATTTTGCTCCG 57.002 39.130 0.00 0.00 0.00 4.63
811 842 7.930865 AGAGTATAGATTCACTCATTTTGCTCC 59.069 37.037 4.70 0.00 42.99 4.70
812 843 8.885494 AGAGTATAGATTCACTCATTTTGCTC 57.115 34.615 4.70 0.00 42.99 4.26
833 864 8.031864 CGGATGTATCTAGATGCATTTTAGAGT 58.968 37.037 29.66 12.13 42.77 3.24
834 865 8.031864 ACGGATGTATCTAGATGCATTTTAGAG 58.968 37.037 29.66 20.36 42.77 2.43
835 866 7.896811 ACGGATGTATCTAGATGCATTTTAGA 58.103 34.615 29.66 18.53 42.77 2.10
836 867 9.809096 ATACGGATGTATCTAGATGCATTTTAG 57.191 33.333 29.66 22.88 42.77 1.85
837 868 9.586435 CATACGGATGTATCTAGATGCATTTTA 57.414 33.333 29.66 21.80 42.77 1.52
838 869 8.097038 ACATACGGATGTATCTAGATGCATTTT 58.903 33.333 29.66 20.74 44.77 1.82
839 870 7.547019 CACATACGGATGTATCTAGATGCATTT 59.453 37.037 29.66 21.00 44.82 2.32
840 871 7.038048 CACATACGGATGTATCTAGATGCATT 58.962 38.462 29.66 19.73 44.82 3.56
841 872 6.406288 CCACATACGGATGTATCTAGATGCAT 60.406 42.308 29.54 29.54 44.82 3.96
842 873 5.105756 CCACATACGGATGTATCTAGATGCA 60.106 44.000 23.38 23.38 44.82 3.96
843 874 5.105716 ACCACATACGGATGTATCTAGATGC 60.106 44.000 14.23 14.54 44.82 3.91
844 875 6.404844 GGACCACATACGGATGTATCTAGATG 60.405 46.154 14.23 0.00 44.82 2.90
845 876 5.652891 GGACCACATACGGATGTATCTAGAT 59.347 44.000 14.23 10.73 44.82 1.98
846 877 5.008331 GGACCACATACGGATGTATCTAGA 58.992 45.833 14.23 0.00 44.82 2.43
847 878 4.765339 TGGACCACATACGGATGTATCTAG 59.235 45.833 14.23 0.00 44.82 2.43
848 879 4.732065 TGGACCACATACGGATGTATCTA 58.268 43.478 14.23 9.44 44.82 1.98
849 880 3.572642 TGGACCACATACGGATGTATCT 58.427 45.455 14.23 0.00 44.82 1.98
850 881 4.537135 ATGGACCACATACGGATGTATC 57.463 45.455 14.23 13.80 44.82 2.24
851 882 5.084519 ACTATGGACCACATACGGATGTAT 58.915 41.667 14.23 4.48 44.82 2.29
852 883 4.476297 ACTATGGACCACATACGGATGTA 58.524 43.478 14.23 0.00 44.82 2.29
854 885 5.462530 TTACTATGGACCACATACGGATG 57.537 43.478 5.94 5.94 41.03 3.51
855 886 6.488769 TTTTACTATGGACCACATACGGAT 57.511 37.500 0.00 0.00 41.03 4.18
856 887 5.936187 TTTTACTATGGACCACATACGGA 57.064 39.130 0.00 0.00 41.03 4.69
857 888 6.522054 AGATTTTACTATGGACCACATACGG 58.478 40.000 0.00 0.00 41.03 4.02
858 889 7.434492 AGAGATTTTACTATGGACCACATACG 58.566 38.462 0.00 0.00 41.03 3.06
859 890 9.694137 GTAGAGATTTTACTATGGACCACATAC 57.306 37.037 0.00 0.00 41.03 2.39
860 891 9.429109 TGTAGAGATTTTACTATGGACCACATA 57.571 33.333 0.00 0.00 41.03 2.29
861 892 8.319057 TGTAGAGATTTTACTATGGACCACAT 57.681 34.615 0.00 0.00 43.68 3.21
862 893 7.727578 TGTAGAGATTTTACTATGGACCACA 57.272 36.000 0.00 0.00 0.00 4.17
863 894 9.099454 CTTTGTAGAGATTTTACTATGGACCAC 57.901 37.037 0.00 0.00 0.00 4.16
864 895 9.042450 TCTTTGTAGAGATTTTACTATGGACCA 57.958 33.333 0.00 0.00 0.00 4.02
865 896 9.315525 GTCTTTGTAGAGATTTTACTATGGACC 57.684 37.037 0.00 0.00 0.00 4.46
884 915 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
885 916 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
886 917 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
887 918 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
888 919 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
889 920 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
890 921 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
891 922 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
892 923 7.300658 AGTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
893 924 6.856757 AGTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
894 925 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
895 926 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
896 927 3.959449 GAGTACTCCCTCCGTTCCTAAAT 59.041 47.826 12.13 0.00 0.00 1.40
897 928 3.245371 TGAGTACTCCCTCCGTTCCTAAA 60.245 47.826 20.11 0.00 0.00 1.85
898 929 2.309755 TGAGTACTCCCTCCGTTCCTAA 59.690 50.000 20.11 0.00 0.00 2.69
899 930 1.918262 TGAGTACTCCCTCCGTTCCTA 59.082 52.381 20.11 0.00 0.00 2.94
900 931 0.702902 TGAGTACTCCCTCCGTTCCT 59.297 55.000 20.11 0.00 0.00 3.36
901 932 0.816373 GTGAGTACTCCCTCCGTTCC 59.184 60.000 20.11 0.00 0.00 3.62
902 933 0.816373 GGTGAGTACTCCCTCCGTTC 59.184 60.000 20.11 0.00 0.00 3.95
903 934 0.113776 TGGTGAGTACTCCCTCCGTT 59.886 55.000 20.11 0.00 0.00 4.44
904 935 0.335361 ATGGTGAGTACTCCCTCCGT 59.665 55.000 20.11 16.49 0.00 4.69
905 936 0.747255 CATGGTGAGTACTCCCTCCG 59.253 60.000 20.11 9.29 0.00 4.63
906 937 0.466124 GCATGGTGAGTACTCCCTCC 59.534 60.000 20.11 18.14 0.00 4.30
907 938 1.195115 TGCATGGTGAGTACTCCCTC 58.805 55.000 20.11 10.25 0.00 4.30
908 939 1.487976 CATGCATGGTGAGTACTCCCT 59.512 52.381 19.40 8.07 0.00 4.20
909 940 1.210478 ACATGCATGGTGAGTACTCCC 59.790 52.381 29.41 19.17 0.00 4.30
910 941 2.169352 AGACATGCATGGTGAGTACTCC 59.831 50.000 29.41 11.08 0.00 3.85
911 942 3.118992 TGAGACATGCATGGTGAGTACTC 60.119 47.826 29.41 21.64 0.00 2.59
912 943 2.833943 TGAGACATGCATGGTGAGTACT 59.166 45.455 29.41 15.60 0.00 2.73
913 944 3.251479 TGAGACATGCATGGTGAGTAC 57.749 47.619 29.41 13.62 0.00 2.73
1082 1118 0.816825 CGGCCTGTCCTTCATGATGG 60.817 60.000 19.32 19.32 0.00 3.51
1112 1148 1.305046 ACCGGGAAGACCTCGATGT 60.305 57.895 6.32 0.00 36.97 3.06
1140 1176 2.663196 CTGAAGTCCCCGGTCACC 59.337 66.667 0.00 0.00 0.00 4.02
1215 1251 3.614092 ACGATGGAGCATCAATCAAAGT 58.386 40.909 0.00 0.00 46.22 2.66
1233 1269 3.263261 ACACACACACACACATAAACGA 58.737 40.909 0.00 0.00 0.00 3.85
1263 1310 8.634444 CACTACTCACTAGCTATGGTTTATTCT 58.366 37.037 0.00 0.00 0.00 2.40
1306 1359 0.238817 CGACCGACATAGCTAGGAGC 59.761 60.000 13.23 2.79 42.84 4.70
1378 1437 1.737838 TATCAAAGTCGCAAGCCTGG 58.262 50.000 0.00 0.00 37.18 4.45
1380 1439 3.550437 AGATATCAAAGTCGCAAGCCT 57.450 42.857 5.32 0.00 37.18 4.58
1414 1473 5.695851 TGAAATGGTTTCAAGAGAGAAGC 57.304 39.130 2.84 0.00 45.94 3.86
1440 1781 7.482743 ACATGTTCGATCATTTGAGATTTTTCG 59.517 33.333 6.24 0.00 0.00 3.46
1446 1787 9.112725 TGATAAACATGTTCGATCATTTGAGAT 57.887 29.630 22.84 4.13 0.00 2.75
1447 1788 8.491331 TGATAAACATGTTCGATCATTTGAGA 57.509 30.769 22.84 7.31 0.00 3.27
1448 1789 9.726232 ATTGATAAACATGTTCGATCATTTGAG 57.274 29.630 25.33 0.00 30.15 3.02
1452 1793 9.950680 GGTAATTGATAAACATGTTCGATCATT 57.049 29.630 25.33 21.05 30.15 2.57
1453 1794 9.119418 TGGTAATTGATAAACATGTTCGATCAT 57.881 29.630 25.33 18.20 30.15 2.45
1454 1795 8.499403 TGGTAATTGATAAACATGTTCGATCA 57.501 30.769 22.84 22.84 0.00 2.92
1455 1796 9.438291 CTTGGTAATTGATAAACATGTTCGATC 57.562 33.333 12.39 16.96 0.00 3.69
1456 1797 9.173021 TCTTGGTAATTGATAAACATGTTCGAT 57.827 29.630 12.39 8.56 0.00 3.59
1457 1798 8.554835 TCTTGGTAATTGATAAACATGTTCGA 57.445 30.769 12.39 3.44 0.00 3.71
1511 1852 9.710818 AGTCAATTAGTCTGGGTAATTAGTCTA 57.289 33.333 0.00 0.00 30.52 2.59
1512 1853 8.611051 AGTCAATTAGTCTGGGTAATTAGTCT 57.389 34.615 0.00 0.00 30.52 3.24
1542 1883 8.918658 CGAACAATGTTCAATCATTTGAGATTT 58.081 29.630 23.72 0.00 42.60 2.17
1543 1884 8.084073 ACGAACAATGTTCAATCATTTGAGATT 58.916 29.630 23.72 0.00 42.60 2.40
1544 1885 7.596494 ACGAACAATGTTCAATCATTTGAGAT 58.404 30.769 23.72 0.00 42.60 2.75
1545 1886 6.969366 ACGAACAATGTTCAATCATTTGAGA 58.031 32.000 23.72 0.00 42.60 3.27
1546 1887 7.627585 AACGAACAATGTTCAATCATTTGAG 57.372 32.000 23.72 7.65 42.60 3.02
1547 1888 7.704047 TGAAACGAACAATGTTCAATCATTTGA 59.296 29.630 23.72 8.71 40.09 2.69
1548 1889 7.839493 TGAAACGAACAATGTTCAATCATTTG 58.161 30.769 23.72 8.93 36.10 2.32
1549 1890 8.489559 CATGAAACGAACAATGTTCAATCATTT 58.510 29.630 23.72 14.97 36.10 2.32
1550 1891 7.652909 ACATGAAACGAACAATGTTCAATCATT 59.347 29.630 23.72 15.50 38.38 2.57
1551 1892 7.115236 CACATGAAACGAACAATGTTCAATCAT 59.885 33.333 23.72 22.62 29.09 2.45
1552 1893 6.417339 CACATGAAACGAACAATGTTCAATCA 59.583 34.615 23.72 21.64 0.00 2.57
1553 1894 6.417635 ACACATGAAACGAACAATGTTCAATC 59.582 34.615 23.72 17.62 0.00 2.67
1554 1895 6.198778 CACACATGAAACGAACAATGTTCAAT 59.801 34.615 23.72 10.05 0.00 2.57
1555 1896 5.514559 CACACATGAAACGAACAATGTTCAA 59.485 36.000 23.72 6.03 0.00 2.69
1556 1897 5.033507 CACACATGAAACGAACAATGTTCA 58.966 37.500 23.72 7.02 0.00 3.18
1557 1898 5.034152 ACACACATGAAACGAACAATGTTC 58.966 37.500 15.62 15.62 0.00 3.18
1558 1899 4.797868 CACACACATGAAACGAACAATGTT 59.202 37.500 0.00 0.00 0.00 2.71
1559 1900 4.142491 ACACACACATGAAACGAACAATGT 60.142 37.500 0.00 0.00 0.00 2.71
1560 1901 4.204775 CACACACACATGAAACGAACAATG 59.795 41.667 0.00 0.00 0.00 2.82
1561 1902 4.142491 ACACACACACATGAAACGAACAAT 60.142 37.500 0.00 0.00 0.00 2.71
1562 1903 3.189495 ACACACACACATGAAACGAACAA 59.811 39.130 0.00 0.00 0.00 2.83
1563 1904 2.744741 ACACACACACATGAAACGAACA 59.255 40.909 0.00 0.00 0.00 3.18
1564 1905 3.097910 CACACACACACATGAAACGAAC 58.902 45.455 0.00 0.00 0.00 3.95
1565 1906 2.744741 ACACACACACACATGAAACGAA 59.255 40.909 0.00 0.00 0.00 3.85
1566 1907 2.095053 CACACACACACACATGAAACGA 59.905 45.455 0.00 0.00 0.00 3.85
1567 1908 2.159585 ACACACACACACACATGAAACG 60.160 45.455 0.00 0.00 0.00 3.60
1568 1909 3.170505 CACACACACACACACATGAAAC 58.829 45.455 0.00 0.00 0.00 2.78
1569 1910 2.816672 ACACACACACACACACATGAAA 59.183 40.909 0.00 0.00 0.00 2.69
1570 1911 2.161211 CACACACACACACACACATGAA 59.839 45.455 0.00 0.00 0.00 2.57
1571 1912 1.736681 CACACACACACACACACATGA 59.263 47.619 0.00 0.00 0.00 3.07
1572 1913 1.468127 ACACACACACACACACACATG 59.532 47.619 0.00 0.00 0.00 3.21
1573 1914 1.468127 CACACACACACACACACACAT 59.532 47.619 0.00 0.00 0.00 3.21
1574 1915 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1575 1916 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1576 1917 1.598882 AACACACACACACACACACA 58.401 45.000 0.00 0.00 0.00 3.72
1577 1918 5.666969 ATATAACACACACACACACACAC 57.333 39.130 0.00 0.00 0.00 3.82
1578 1919 5.237561 GGAATATAACACACACACACACACA 59.762 40.000 0.00 0.00 0.00 3.72
1579 1920 5.468746 AGGAATATAACACACACACACACAC 59.531 40.000 0.00 0.00 0.00 3.82
1580 1921 5.468409 CAGGAATATAACACACACACACACA 59.532 40.000 0.00 0.00 0.00 3.72
1581 1922 5.699001 TCAGGAATATAACACACACACACAC 59.301 40.000 0.00 0.00 0.00 3.82
1582 1923 5.859495 TCAGGAATATAACACACACACACA 58.141 37.500 0.00 0.00 0.00 3.72
1583 1924 6.795098 TTCAGGAATATAACACACACACAC 57.205 37.500 0.00 0.00 0.00 3.82
1584 1925 9.508642 TTTATTCAGGAATATAACACACACACA 57.491 29.630 2.79 0.00 33.71 3.72
1585 1926 9.769093 GTTTATTCAGGAATATAACACACACAC 57.231 33.333 2.79 0.00 33.71 3.82
1586 1927 8.952278 GGTTTATTCAGGAATATAACACACACA 58.048 33.333 18.09 0.00 33.71 3.72
1587 1928 8.952278 TGGTTTATTCAGGAATATAACACACAC 58.048 33.333 18.09 9.02 30.59 3.82
1588 1929 9.693739 ATGGTTTATTCAGGAATATAACACACA 57.306 29.630 10.90 8.42 35.70 3.72
1596 1937 9.950496 CACTAGCTATGGTTTATTCAGGAATAT 57.050 33.333 0.00 0.00 33.71 1.28
1597 1938 9.154632 TCACTAGCTATGGTTTATTCAGGAATA 57.845 33.333 0.00 0.00 32.50 1.75
1598 1939 8.034313 TCACTAGCTATGGTTTATTCAGGAAT 57.966 34.615 0.00 0.00 34.93 3.01
1599 1940 7.419057 CCTCACTAGCTATGGTTTATTCAGGAA 60.419 40.741 0.00 0.00 0.00 3.36
1600 1941 6.042093 CCTCACTAGCTATGGTTTATTCAGGA 59.958 42.308 0.00 0.00 0.00 3.86
1601 1942 6.226787 CCTCACTAGCTATGGTTTATTCAGG 58.773 44.000 0.00 0.00 0.00 3.86
1602 1943 6.183361 ACCCTCACTAGCTATGGTTTATTCAG 60.183 42.308 0.00 0.00 0.00 3.02
1603 1944 5.665812 ACCCTCACTAGCTATGGTTTATTCA 59.334 40.000 0.00 0.00 0.00 2.57
1604 1945 5.992217 CACCCTCACTAGCTATGGTTTATTC 59.008 44.000 0.00 0.00 0.00 1.75
1605 1946 5.428783 ACACCCTCACTAGCTATGGTTTATT 59.571 40.000 0.00 0.00 0.00 1.40
1606 1947 4.969359 ACACCCTCACTAGCTATGGTTTAT 59.031 41.667 0.00 0.00 0.00 1.40
1607 1948 4.359105 ACACCCTCACTAGCTATGGTTTA 58.641 43.478 0.00 0.00 0.00 2.01
1608 1949 3.182152 ACACCCTCACTAGCTATGGTTT 58.818 45.455 0.00 0.00 0.00 3.27
1609 1950 2.834113 ACACCCTCACTAGCTATGGTT 58.166 47.619 0.00 0.00 0.00 3.67
1610 1951 2.552093 ACACCCTCACTAGCTATGGT 57.448 50.000 0.00 0.00 0.00 3.55
1611 1952 3.898123 ACATACACCCTCACTAGCTATGG 59.102 47.826 0.00 0.00 0.00 2.74
1612 1953 5.535030 TGTACATACACCCTCACTAGCTATG 59.465 44.000 0.00 0.00 0.00 2.23
1613 1954 5.702266 TGTACATACACCCTCACTAGCTAT 58.298 41.667 0.00 0.00 0.00 2.97
1614 1955 5.120054 TGTACATACACCCTCACTAGCTA 57.880 43.478 0.00 0.00 0.00 3.32
1615 1956 3.977312 TGTACATACACCCTCACTAGCT 58.023 45.455 0.00 0.00 0.00 3.32
1616 1957 4.730949 TTGTACATACACCCTCACTAGC 57.269 45.455 0.00 0.00 35.64 3.42
1617 1958 7.255520 GGAGTATTGTACATACACCCTCACTAG 60.256 44.444 14.90 0.00 35.64 2.57
1618 1959 6.548622 GGAGTATTGTACATACACCCTCACTA 59.451 42.308 14.90 0.00 35.64 2.74
1619 1960 5.363005 GGAGTATTGTACATACACCCTCACT 59.637 44.000 14.90 3.25 35.64 3.41
1620 1961 5.363005 AGGAGTATTGTACATACACCCTCAC 59.637 44.000 18.81 6.88 36.37 3.51
1621 1962 5.525484 AGGAGTATTGTACATACACCCTCA 58.475 41.667 18.81 0.00 36.37 3.86
1622 1963 6.294620 GCTAGGAGTATTGTACATACACCCTC 60.295 46.154 18.81 10.37 36.37 4.30
1623 1964 5.539193 GCTAGGAGTATTGTACATACACCCT 59.461 44.000 18.81 19.40 36.37 4.34
1624 1965 5.539193 AGCTAGGAGTATTGTACATACACCC 59.461 44.000 18.81 15.82 36.37 4.61
1625 1966 6.651975 AGCTAGGAGTATTGTACATACACC 57.348 41.667 16.64 16.64 35.64 4.16
1626 1967 8.794553 ACATAGCTAGGAGTATTGTACATACAC 58.205 37.037 13.23 0.96 35.64 2.90
1627 1968 8.935614 ACATAGCTAGGAGTATTGTACATACA 57.064 34.615 13.23 0.00 0.00 2.29
1628 1969 8.176365 CGACATAGCTAGGAGTATTGTACATAC 58.824 40.741 13.23 2.05 0.00 2.39
1629 1970 8.098912 TCGACATAGCTAGGAGTATTGTACATA 58.901 37.037 13.23 0.00 0.00 2.29
1630 1971 6.940867 TCGACATAGCTAGGAGTATTGTACAT 59.059 38.462 13.23 0.00 0.00 2.29
1631 1972 6.293698 TCGACATAGCTAGGAGTATTGTACA 58.706 40.000 13.23 0.00 0.00 2.90
1632 1973 6.798315 TCGACATAGCTAGGAGTATTGTAC 57.202 41.667 13.23 0.00 0.00 2.90
1633 1974 6.313164 CGATCGACATAGCTAGGAGTATTGTA 59.687 42.308 13.23 0.00 0.00 2.41
1634 1975 5.122554 CGATCGACATAGCTAGGAGTATTGT 59.877 44.000 13.23 2.75 0.00 2.71
1635 1976 5.564768 CGATCGACATAGCTAGGAGTATTG 58.435 45.833 13.23 0.00 0.00 1.90
1636 1977 4.095185 GCGATCGACATAGCTAGGAGTATT 59.905 45.833 21.57 0.00 0.00 1.89
1637 1978 3.623960 GCGATCGACATAGCTAGGAGTAT 59.376 47.826 21.57 1.80 0.00 2.12
1638 1979 3.001414 GCGATCGACATAGCTAGGAGTA 58.999 50.000 21.57 0.00 0.00 2.59
1639 1980 1.807742 GCGATCGACATAGCTAGGAGT 59.192 52.381 21.57 4.12 0.00 3.85
1640 1981 1.131504 GGCGATCGACATAGCTAGGAG 59.868 57.143 21.57 5.88 31.56 3.69
1641 1982 1.166129 GGCGATCGACATAGCTAGGA 58.834 55.000 21.57 0.72 31.56 2.94
1642 1983 0.881796 TGGCGATCGACATAGCTAGG 59.118 55.000 22.34 3.34 31.56 3.02
1643 1984 2.095008 ACATGGCGATCGACATAGCTAG 60.095 50.000 34.69 23.87 42.92 3.42
1644 1985 1.886542 ACATGGCGATCGACATAGCTA 59.113 47.619 34.69 7.61 42.92 3.32
1645 1986 0.676184 ACATGGCGATCGACATAGCT 59.324 50.000 34.69 17.85 42.92 3.32
1646 1987 1.986378 GTACATGGCGATCGACATAGC 59.014 52.381 34.69 22.61 42.92 2.97
1647 1988 2.095919 TCGTACATGGCGATCGACATAG 60.096 50.000 34.69 27.97 42.92 2.23
1648 1989 1.874872 TCGTACATGGCGATCGACATA 59.125 47.619 34.69 19.09 42.92 2.29
1649 1990 0.666374 TCGTACATGGCGATCGACAT 59.334 50.000 30.59 30.59 46.28 3.06
1650 1991 0.028902 CTCGTACATGGCGATCGACA 59.971 55.000 28.59 28.59 37.74 4.35
1651 1992 0.029035 ACTCGTACATGGCGATCGAC 59.971 55.000 21.57 18.80 37.74 4.20
1652 1993 0.736636 AACTCGTACATGGCGATCGA 59.263 50.000 21.57 0.00 37.74 3.59
1653 1994 2.394545 TAACTCGTACATGGCGATCG 57.605 50.000 11.69 11.69 37.74 3.69
1654 1995 6.946229 ATTATTAACTCGTACATGGCGATC 57.054 37.500 13.55 0.00 37.74 3.69
1655 1996 8.821147 TTAATTATTAACTCGTACATGGCGAT 57.179 30.769 13.55 4.70 37.74 4.58
1656 1997 8.645730 TTTAATTATTAACTCGTACATGGCGA 57.354 30.769 12.75 12.75 36.85 5.54
1657 1998 8.545420 ACTTTAATTATTAACTCGTACATGGCG 58.455 33.333 0.00 1.17 0.00 5.69
1665 2006 8.875803 TGCGATCAACTTTAATTATTAACTCGT 58.124 29.630 0.00 0.00 0.00 4.18
1666 2007 9.358123 CTGCGATCAACTTTAATTATTAACTCG 57.642 33.333 0.00 2.17 0.00 4.18
1667 2008 9.651718 CCTGCGATCAACTTTAATTATTAACTC 57.348 33.333 0.00 0.00 0.00 3.01
1668 2009 8.129211 GCCTGCGATCAACTTTAATTATTAACT 58.871 33.333 0.00 0.00 0.00 2.24
1669 2010 8.129211 AGCCTGCGATCAACTTTAATTATTAAC 58.871 33.333 0.00 0.00 0.00 2.01
1670 2011 8.220755 AGCCTGCGATCAACTTTAATTATTAA 57.779 30.769 0.00 0.00 0.00 1.40
1671 2012 7.801716 AGCCTGCGATCAACTTTAATTATTA 57.198 32.000 0.00 0.00 0.00 0.98
1672 2013 6.699575 AGCCTGCGATCAACTTTAATTATT 57.300 33.333 0.00 0.00 0.00 1.40
1673 2014 6.498304 CAAGCCTGCGATCAACTTTAATTAT 58.502 36.000 0.00 0.00 0.00 1.28
1674 2015 5.676079 GCAAGCCTGCGATCAACTTTAATTA 60.676 40.000 0.00 0.00 39.20 1.40
1675 2016 4.737054 CAAGCCTGCGATCAACTTTAATT 58.263 39.130 0.00 0.00 0.00 1.40
1676 2017 3.428045 GCAAGCCTGCGATCAACTTTAAT 60.428 43.478 0.00 0.00 39.20 1.40
1677 2018 2.095263 GCAAGCCTGCGATCAACTTTAA 60.095 45.455 0.00 0.00 39.20 1.52
1678 2019 1.468520 GCAAGCCTGCGATCAACTTTA 59.531 47.619 0.00 0.00 39.20 1.85
1679 2020 0.242017 GCAAGCCTGCGATCAACTTT 59.758 50.000 0.00 0.00 39.20 2.66
1680 2021 1.878775 GCAAGCCTGCGATCAACTT 59.121 52.632 0.00 0.00 39.20 2.66
1681 2022 3.583383 GCAAGCCTGCGATCAACT 58.417 55.556 0.00 0.00 39.20 3.16
1693 2034 2.947652 TCAAGATATCAAGGCAGCAAGC 59.052 45.455 5.32 0.00 44.65 4.01
1694 2035 5.064558 AGATCAAGATATCAAGGCAGCAAG 58.935 41.667 5.32 0.00 0.00 4.01
1695 2036 5.045012 AGATCAAGATATCAAGGCAGCAA 57.955 39.130 5.32 0.00 0.00 3.91
1696 2037 4.701651 AGATCAAGATATCAAGGCAGCA 57.298 40.909 5.32 0.00 0.00 4.41
1697 2038 7.684937 ATTAAGATCAAGATATCAAGGCAGC 57.315 36.000 5.32 0.00 0.00 5.25
1699 2040 9.631257 TGAAATTAAGATCAAGATATCAAGGCA 57.369 29.630 5.32 0.00 0.00 4.75
1721 2062 8.806634 CGAAATTGTTTCAACAGAGAAATGAAA 58.193 29.630 3.66 0.00 40.50 2.69
1722 2063 8.187480 TCGAAATTGTTTCAACAGAGAAATGAA 58.813 29.630 3.66 0.00 40.50 2.57
1723 2064 7.702386 TCGAAATTGTTTCAACAGAGAAATGA 58.298 30.769 3.66 0.00 40.50 2.57
1724 2065 7.912949 TCGAAATTGTTTCAACAGAGAAATG 57.087 32.000 3.66 0.00 40.50 2.32
1725 2066 9.612620 GTATCGAAATTGTTTCAACAGAGAAAT 57.387 29.630 0.00 0.00 40.50 2.17
1726 2067 7.796660 CGTATCGAAATTGTTTCAACAGAGAAA 59.203 33.333 0.00 0.00 40.50 2.52
1727 2068 7.170151 TCGTATCGAAATTGTTTCAACAGAGAA 59.830 33.333 0.00 0.00 39.63 2.87
1728 2069 6.643360 TCGTATCGAAATTGTTTCAACAGAGA 59.357 34.615 0.00 0.00 39.63 3.10
1729 2070 6.817396 TCGTATCGAAATTGTTTCAACAGAG 58.183 36.000 0.00 0.00 39.63 3.35
1730 2071 6.772770 TCGTATCGAAATTGTTTCAACAGA 57.227 33.333 0.00 0.00 39.63 3.41
1754 2095 7.920151 TGAACATGTTCGATCATTTGAGTTTTT 59.080 29.630 28.55 0.00 42.28 1.94
1755 2096 7.424803 TGAACATGTTCGATCATTTGAGTTTT 58.575 30.769 28.55 0.00 42.28 2.43
1756 2097 6.969366 TGAACATGTTCGATCATTTGAGTTT 58.031 32.000 28.55 0.00 42.28 2.66
1757 2098 6.558771 TGAACATGTTCGATCATTTGAGTT 57.441 33.333 28.55 7.71 42.28 3.01
1806 2174 4.750098 CACGGGGCTTATTGACTAGTATTG 59.250 45.833 0.00 0.00 0.00 1.90
1852 2222 3.068024 TGGGAGTTTTTGCAATGTCTCAC 59.932 43.478 19.37 17.63 0.00 3.51
1858 2228 1.415659 TGGGTGGGAGTTTTTGCAATG 59.584 47.619 0.00 0.00 0.00 2.82
1866 2236 3.621682 TTTAATGGTGGGTGGGAGTTT 57.378 42.857 0.00 0.00 0.00 2.66
1909 2279 0.686441 AGAGTATGTGCGCTACCCCA 60.686 55.000 9.73 0.00 0.00 4.96
1926 2296 1.367346 TTGGTGGCCCAGTAATCAGA 58.633 50.000 0.00 0.00 43.15 3.27
2015 2385 6.701400 ACATGCCTCAGTAAAATTTGTGAAAC 59.299 34.615 0.00 0.00 37.35 2.78
2132 2505 8.509690 CGTGAAGATATCTTAAATGGCATGAAT 58.490 33.333 17.94 0.00 36.11 2.57
2138 2511 5.673337 TGCGTGAAGATATCTTAAATGGC 57.327 39.130 17.94 14.35 36.11 4.40
2171 2544 8.682016 CGTGAACACTTTTCAAAATAGATGAAC 58.318 33.333 3.51 0.00 36.57 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.