Multiple sequence alignment - TraesCS3D01G094000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G094000 chr3D 100.000 2032 0 0 1 2032 47742378 47740347 0.000000e+00 3753
1 TraesCS3D01G094000 chr3D 91.559 1244 67 16 792 2023 47708838 47707621 0.000000e+00 1681
2 TraesCS3D01G094000 chr3D 90.066 1208 78 30 792 1994 47704580 47703410 0.000000e+00 1528
3 TraesCS3D01G094000 chr3D 91.945 807 43 5 3 791 345445349 345444547 0.000000e+00 1110
4 TraesCS3D01G094000 chr3D 91.915 804 45 9 3 789 610923602 610924402 0.000000e+00 1107
5 TraesCS3D01G094000 chr3D 90.718 808 55 6 3 791 110807309 110806503 0.000000e+00 1059
6 TraesCS3D01G094000 chr3D 100.000 568 0 0 2413 2980 47739966 47739399 0.000000e+00 1050
7 TraesCS3D01G094000 chr3D 87.500 280 31 2 880 1159 47671039 47670764 1.330000e-83 320
8 TraesCS3D01G094000 chr3B 90.246 1220 85 25 792 1994 74762087 74763289 0.000000e+00 1563
9 TraesCS3D01G094000 chr3B 91.729 798 43 14 1205 1994 74805843 74806625 0.000000e+00 1086
10 TraesCS3D01G094000 chr3B 84.091 1100 122 30 880 1937 74817223 74818311 0.000000e+00 1013
11 TraesCS3D01G094000 chr3B 90.155 386 26 7 792 1173 74805244 74805621 2.670000e-135 492
12 TraesCS3D01G094000 chr3A 89.861 1223 77 24 792 1994 60006532 60005337 0.000000e+00 1528
13 TraesCS3D01G094000 chr3A 91.092 1145 66 15 882 2010 60029763 60028639 0.000000e+00 1517
14 TraesCS3D01G094000 chr3A 89.556 1216 81 23 797 1994 59955819 59954632 0.000000e+00 1500
15 TraesCS3D01G094000 chr3A 92.804 806 36 4 3 791 25776269 25775469 0.000000e+00 1147
16 TraesCS3D01G094000 chr3A 90.755 768 42 5 3 741 175800614 175801381 0.000000e+00 998
17 TraesCS3D01G094000 chr3A 87.891 735 62 18 1227 1937 59823858 59823127 0.000000e+00 839
18 TraesCS3D01G094000 chr3A 90.000 380 18 3 429 791 62615261 62614885 9.670000e-130 473
19 TraesCS3D01G094000 chr3A 97.071 239 7 0 2742 2980 218721272 218721034 1.290000e-108 403
20 TraesCS3D01G094000 chr3A 85.235 298 36 5 880 1173 59824236 59823943 1.740000e-77 300
21 TraesCS3D01G094000 chr5A 92.432 806 41 3 3 791 31375004 31375806 0.000000e+00 1133
22 TraesCS3D01G094000 chr5A 91.852 810 38 15 3 791 393354881 393354079 0.000000e+00 1105
23 TraesCS3D01G094000 chr4A 92.413 804 42 4 3 791 27261301 27262100 0.000000e+00 1129
24 TraesCS3D01G094000 chr4A 96.708 243 8 0 2738 2980 109187099 109186857 3.580000e-109 405
25 TraesCS3D01G094000 chr7D 92.434 793 39 6 19 793 631661348 631662137 0.000000e+00 1112
26 TraesCS3D01G094000 chr7D 77.018 570 75 26 1271 1803 31103707 31103157 2.930000e-70 276
27 TraesCS3D01G094000 chr1D 91.945 807 45 9 3 792 447374994 447375797 0.000000e+00 1112
28 TraesCS3D01G094000 chr1D 91.553 805 54 10 1 791 185082399 185081595 0.000000e+00 1098
29 TraesCS3D01G094000 chr1D 96.296 243 9 0 2738 2980 322202788 322203030 1.660000e-107 399
30 TraesCS3D01G094000 chr2D 91.584 808 48 5 3 792 637117773 637118578 0.000000e+00 1098
31 TraesCS3D01G094000 chr2D 97.131 244 7 0 2737 2980 306416941 306416698 2.140000e-111 412
32 TraesCS3D01G094000 chrUn 93.017 759 33 5 3 744 10073333 10074088 0.000000e+00 1090
33 TraesCS3D01G094000 chrUn 94.828 580 30 0 3 582 69336528 69337107 0.000000e+00 905
34 TraesCS3D01G094000 chrUn 94.655 580 31 0 3 582 69354098 69354677 0.000000e+00 900
35 TraesCS3D01G094000 chr4D 97.083 240 7 0 2741 2980 422807127 422806888 3.580000e-109 405
36 TraesCS3D01G094000 chr7B 97.071 239 7 0 2742 2980 384757230 384757468 1.290000e-108 403
37 TraesCS3D01G094000 chr1B 97.071 239 7 0 2742 2980 490718392 490718630 1.290000e-108 403
38 TraesCS3D01G094000 chr6A 96.296 243 9 0 2738 2980 459786745 459786987 1.660000e-107 399
39 TraesCS3D01G094000 chr2B 95.238 252 11 1 2729 2980 579608083 579608333 5.990000e-107 398


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G094000 chr3D 47739399 47742378 2979 True 2401.5 3753 100.0000 1 2980 2 chr3D.!!$R5 2979
1 TraesCS3D01G094000 chr3D 47703410 47708838 5428 True 1604.5 1681 90.8125 792 2023 2 chr3D.!!$R4 1231
2 TraesCS3D01G094000 chr3D 345444547 345445349 802 True 1110.0 1110 91.9450 3 791 1 chr3D.!!$R3 788
3 TraesCS3D01G094000 chr3D 610923602 610924402 800 False 1107.0 1107 91.9150 3 789 1 chr3D.!!$F1 786
4 TraesCS3D01G094000 chr3D 110806503 110807309 806 True 1059.0 1059 90.7180 3 791 1 chr3D.!!$R2 788
5 TraesCS3D01G094000 chr3B 74762087 74763289 1202 False 1563.0 1563 90.2460 792 1994 1 chr3B.!!$F1 1202
6 TraesCS3D01G094000 chr3B 74817223 74818311 1088 False 1013.0 1013 84.0910 880 1937 1 chr3B.!!$F2 1057
7 TraesCS3D01G094000 chr3B 74805244 74806625 1381 False 789.0 1086 90.9420 792 1994 2 chr3B.!!$F3 1202
8 TraesCS3D01G094000 chr3A 60005337 60006532 1195 True 1528.0 1528 89.8610 792 1994 1 chr3A.!!$R3 1202
9 TraesCS3D01G094000 chr3A 60028639 60029763 1124 True 1517.0 1517 91.0920 882 2010 1 chr3A.!!$R4 1128
10 TraesCS3D01G094000 chr3A 59954632 59955819 1187 True 1500.0 1500 89.5560 797 1994 1 chr3A.!!$R2 1197
11 TraesCS3D01G094000 chr3A 25775469 25776269 800 True 1147.0 1147 92.8040 3 791 1 chr3A.!!$R1 788
12 TraesCS3D01G094000 chr3A 175800614 175801381 767 False 998.0 998 90.7550 3 741 1 chr3A.!!$F1 738
13 TraesCS3D01G094000 chr3A 59823127 59824236 1109 True 569.5 839 86.5630 880 1937 2 chr3A.!!$R7 1057
14 TraesCS3D01G094000 chr5A 31375004 31375806 802 False 1133.0 1133 92.4320 3 791 1 chr5A.!!$F1 788
15 TraesCS3D01G094000 chr5A 393354079 393354881 802 True 1105.0 1105 91.8520 3 791 1 chr5A.!!$R1 788
16 TraesCS3D01G094000 chr4A 27261301 27262100 799 False 1129.0 1129 92.4130 3 791 1 chr4A.!!$F1 788
17 TraesCS3D01G094000 chr7D 631661348 631662137 789 False 1112.0 1112 92.4340 19 793 1 chr7D.!!$F1 774
18 TraesCS3D01G094000 chr7D 31103157 31103707 550 True 276.0 276 77.0180 1271 1803 1 chr7D.!!$R1 532
19 TraesCS3D01G094000 chr1D 447374994 447375797 803 False 1112.0 1112 91.9450 3 792 1 chr1D.!!$F2 789
20 TraesCS3D01G094000 chr1D 185081595 185082399 804 True 1098.0 1098 91.5530 1 791 1 chr1D.!!$R1 790
21 TraesCS3D01G094000 chr2D 637117773 637118578 805 False 1098.0 1098 91.5840 3 792 1 chr2D.!!$F1 789
22 TraesCS3D01G094000 chrUn 10073333 10074088 755 False 1090.0 1090 93.0170 3 744 1 chrUn.!!$F1 741
23 TraesCS3D01G094000 chrUn 69336528 69337107 579 False 905.0 905 94.8280 3 582 1 chrUn.!!$F2 579
24 TraesCS3D01G094000 chrUn 69354098 69354677 579 False 900.0 900 94.6550 3 582 1 chrUn.!!$F3 579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
687 722 0.466124 GTGTCTCTCCCCCTGTATGC 59.534 60.0 0.0 0.0 0.0 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2449 7029 0.342313 GGGGAAGGGGTAGAGGAAGA 59.658 60.0 0.0 0.0 0.0 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 96 6.020360 GTGAAACGTATTCTTCGGTACATACC 60.020 42.308 0.00 0.00 42.98 2.73
209 210 4.394712 CCGCTCCACTTCCGGCTT 62.395 66.667 0.00 0.00 35.14 4.35
210 211 2.358737 CGCTCCACTTCCGGCTTT 60.359 61.111 0.00 0.00 0.00 3.51
316 317 2.124529 TTGTGGCCAACGCTGTCA 60.125 55.556 7.24 0.00 34.44 3.58
476 477 2.058798 GCTCGACATTCACTTCGTCAA 58.941 47.619 0.00 0.00 36.60 3.18
518 519 1.344438 TGTTCGAGTTCTCCATGTGCT 59.656 47.619 0.00 0.00 0.00 4.40
538 539 2.125552 CCGATCAGCAGTTCGCCA 60.126 61.111 4.22 0.00 44.04 5.69
682 717 1.479709 CTGTAGTGTCTCTCCCCCTG 58.520 60.000 0.00 0.00 0.00 4.45
686 721 2.166907 AGTGTCTCTCCCCCTGTATG 57.833 55.000 0.00 0.00 0.00 2.39
687 722 0.466124 GTGTCTCTCCCCCTGTATGC 59.534 60.000 0.00 0.00 0.00 3.14
730 767 1.335132 ATCGGTCGCACCCCTTGTAT 61.335 55.000 0.50 0.00 33.75 2.29
796 834 5.409826 CACCAAACCATTCTCTACACTTCTC 59.590 44.000 0.00 0.00 0.00 2.87
854 892 4.080129 AGCTCATTTGATTCCAGGAAGCTA 60.080 41.667 18.35 8.28 0.00 3.32
855 893 4.275443 GCTCATTTGATTCCAGGAAGCTAG 59.725 45.833 18.35 8.89 0.00 3.42
858 896 3.550437 TTGATTCCAGGAAGCTAGCTC 57.450 47.619 19.65 11.44 0.00 4.09
859 897 2.756907 TGATTCCAGGAAGCTAGCTCT 58.243 47.619 19.65 9.10 0.00 4.09
860 898 2.697751 TGATTCCAGGAAGCTAGCTCTC 59.302 50.000 19.65 16.59 0.00 3.20
861 899 2.541233 TTCCAGGAAGCTAGCTCTCT 57.459 50.000 19.65 15.30 0.00 3.10
862 900 3.671740 TTCCAGGAAGCTAGCTCTCTA 57.328 47.619 19.65 1.89 0.00 2.43
863 901 2.938838 TCCAGGAAGCTAGCTCTCTAC 58.061 52.381 19.65 2.86 0.00 2.59
865 903 2.884639 CCAGGAAGCTAGCTCTCTACTC 59.115 54.545 19.65 10.56 0.00 2.59
866 904 3.435026 CCAGGAAGCTAGCTCTCTACTCT 60.435 52.174 19.65 0.00 0.00 3.24
867 905 4.202419 CCAGGAAGCTAGCTCTCTACTCTA 60.202 50.000 19.65 0.00 0.00 2.43
868 906 4.997395 CAGGAAGCTAGCTCTCTACTCTAG 59.003 50.000 19.65 4.00 34.45 2.43
869 907 4.905456 AGGAAGCTAGCTCTCTACTCTAGA 59.095 45.833 19.65 0.00 33.44 2.43
870 908 5.368523 AGGAAGCTAGCTCTCTACTCTAGAA 59.631 44.000 19.65 0.00 33.75 2.10
871 909 5.469084 GGAAGCTAGCTCTCTACTCTAGAAC 59.531 48.000 19.65 0.00 33.75 3.01
877 923 3.945285 GCTCTCTACTCTAGAACAGCAGT 59.055 47.826 0.00 0.00 39.17 4.40
878 924 4.398044 GCTCTCTACTCTAGAACAGCAGTT 59.602 45.833 0.00 0.00 39.17 3.16
891 937 2.406616 GCAGTTACCATGGCACGGG 61.407 63.158 13.04 4.86 0.00 5.28
910 956 1.669115 GCTTTCTGGCTGTGCTCGA 60.669 57.895 0.00 0.00 0.00 4.04
1094 1142 2.229302 AGCAGTTTCTCTACGGTGAGTC 59.771 50.000 6.79 0.00 35.68 3.36
1182 1409 5.820947 TCGACCAGCTTAATTAATTTCTCCC 59.179 40.000 5.91 0.00 0.00 4.30
1186 1413 5.823045 CCAGCTTAATTAATTTCTCCCGTCT 59.177 40.000 5.91 0.00 0.00 4.18
1430 1716 1.069823 CATCATCTGGAACCCGGAGAG 59.930 57.143 0.73 0.00 42.74 3.20
1502 1797 1.228613 CCTCCCCTACCCTAGCTCG 60.229 68.421 0.00 0.00 0.00 5.03
1928 6504 0.035534 ACAGCAATGTGTGGGCGATA 60.036 50.000 0.00 0.00 0.00 2.92
1938 6514 3.625313 TGTGTGGGCGATATGTTTGTATG 59.375 43.478 0.00 0.00 0.00 2.39
1984 6564 8.728088 AAGTAAAGAAGCATGTAAATTTCACG 57.272 30.769 0.00 0.00 0.00 4.35
2003 6583 1.257936 CGGTGCCTTTGAATCGATACG 59.742 52.381 0.00 0.00 0.00 3.06
2010 6590 4.154195 GCCTTTGAATCGATACGGCAATAT 59.846 41.667 8.81 0.00 36.16 1.28
2011 6591 5.671329 GCCTTTGAATCGATACGGCAATATC 60.671 44.000 8.81 0.00 36.16 1.63
2458 7038 1.076192 GGCGAGGGGTCTTCCTCTA 60.076 63.158 8.95 0.00 46.01 2.43
2459 7039 1.393487 GGCGAGGGGTCTTCCTCTAC 61.393 65.000 8.95 1.85 46.01 2.59
2460 7040 1.393487 GCGAGGGGTCTTCCTCTACC 61.393 65.000 8.95 0.00 46.01 3.18
2466 7046 1.498264 GGTCTTCCTCTACCCCTTCC 58.502 60.000 0.00 0.00 0.00 3.46
2467 7047 1.498264 GTCTTCCTCTACCCCTTCCC 58.502 60.000 0.00 0.00 0.00 3.97
2468 7048 0.342313 TCTTCCTCTACCCCTTCCCC 59.658 60.000 0.00 0.00 0.00 4.81
2469 7049 0.694783 CTTCCTCTACCCCTTCCCCC 60.695 65.000 0.00 0.00 0.00 5.40
2490 7070 3.827898 CCTCGTGGCGTCTCCCTC 61.828 72.222 0.00 0.00 0.00 4.30
2491 7071 3.062466 CTCGTGGCGTCTCCCTCA 61.062 66.667 0.00 0.00 0.00 3.86
2492 7072 3.343788 CTCGTGGCGTCTCCCTCAC 62.344 68.421 0.00 0.00 0.00 3.51
2493 7073 4.778415 CGTGGCGTCTCCCTCACG 62.778 72.222 0.00 0.00 44.98 4.35
2498 7078 2.795297 CGTCTCCCTCACGCTCTC 59.205 66.667 0.00 0.00 0.00 3.20
2499 7079 2.766400 CGTCTCCCTCACGCTCTCC 61.766 68.421 0.00 0.00 0.00 3.71
2500 7080 1.379309 GTCTCCCTCACGCTCTCCT 60.379 63.158 0.00 0.00 0.00 3.69
2501 7081 1.077357 TCTCCCTCACGCTCTCCTC 60.077 63.158 0.00 0.00 0.00 3.71
2502 7082 2.438614 TCCCTCACGCTCTCCTCG 60.439 66.667 0.00 0.00 0.00 4.63
2503 7083 4.200283 CCCTCACGCTCTCCTCGC 62.200 72.222 0.00 0.00 0.00 5.03
2504 7084 4.200283 CCTCACGCTCTCCTCGCC 62.200 72.222 0.00 0.00 0.00 5.54
2505 7085 4.544689 CTCACGCTCTCCTCGCCG 62.545 72.222 0.00 0.00 0.00 6.46
2510 7090 4.264638 GCTCTCCTCGCCGCTCTC 62.265 72.222 0.00 0.00 0.00 3.20
2511 7091 3.947841 CTCTCCTCGCCGCTCTCG 61.948 72.222 0.00 0.00 0.00 4.04
2512 7092 4.779966 TCTCCTCGCCGCTCTCGT 62.780 66.667 0.00 0.00 0.00 4.18
2513 7093 4.544689 CTCCTCGCCGCTCTCGTG 62.545 72.222 0.00 0.00 0.00 4.35
2520 7100 3.691342 CCGCTCTCGTGGGGTTCA 61.691 66.667 0.00 0.00 37.15 3.18
2521 7101 2.432628 CGCTCTCGTGGGGTTCAC 60.433 66.667 0.00 0.00 42.74 3.18
2522 7102 2.741092 GCTCTCGTGGGGTTCACA 59.259 61.111 0.00 0.00 46.36 3.58
2523 7103 1.668151 GCTCTCGTGGGGTTCACAC 60.668 63.158 0.00 0.00 46.36 3.82
2524 7104 2.050269 CTCTCGTGGGGTTCACACT 58.950 57.895 0.00 0.00 46.36 3.55
2525 7105 0.319900 CTCTCGTGGGGTTCACACTG 60.320 60.000 0.00 0.00 46.36 3.66
2526 7106 1.046472 TCTCGTGGGGTTCACACTGT 61.046 55.000 0.00 0.00 46.36 3.55
2527 7107 0.677288 CTCGTGGGGTTCACACTGTA 59.323 55.000 0.00 0.00 46.36 2.74
2528 7108 0.677288 TCGTGGGGTTCACACTGTAG 59.323 55.000 0.00 0.00 46.36 2.74
2529 7109 0.391597 CGTGGGGTTCACACTGTAGT 59.608 55.000 0.00 0.00 46.36 2.73
2530 7110 1.604693 CGTGGGGTTCACACTGTAGTC 60.605 57.143 0.00 0.00 46.36 2.59
2531 7111 1.414919 GTGGGGTTCACACTGTAGTCA 59.585 52.381 0.00 0.00 45.39 3.41
2532 7112 1.691976 TGGGGTTCACACTGTAGTCAG 59.308 52.381 0.00 0.00 46.18 3.51
2533 7113 1.968493 GGGGTTCACACTGTAGTCAGA 59.032 52.381 2.17 0.00 43.76 3.27
2534 7114 2.567615 GGGGTTCACACTGTAGTCAGAT 59.432 50.000 2.17 0.00 43.76 2.90
2535 7115 3.368531 GGGGTTCACACTGTAGTCAGATC 60.369 52.174 2.17 0.00 43.76 2.75
2536 7116 3.502920 GGTTCACACTGTAGTCAGATCG 58.497 50.000 2.17 0.00 43.76 3.69
2537 7117 3.502920 GTTCACACTGTAGTCAGATCGG 58.497 50.000 2.17 0.00 43.76 4.18
2538 7118 3.067684 TCACACTGTAGTCAGATCGGA 57.932 47.619 2.17 0.00 43.76 4.55
2539 7119 3.621558 TCACACTGTAGTCAGATCGGAT 58.378 45.455 0.00 0.00 43.76 4.18
2540 7120 3.378427 TCACACTGTAGTCAGATCGGATG 59.622 47.826 0.00 0.00 43.76 3.51
2541 7121 2.690497 ACACTGTAGTCAGATCGGATGG 59.310 50.000 0.00 0.00 43.76 3.51
2542 7122 2.035193 CACTGTAGTCAGATCGGATGGG 59.965 54.545 0.00 0.00 43.76 4.00
2543 7123 1.615883 CTGTAGTCAGATCGGATGGGG 59.384 57.143 0.00 0.00 43.76 4.96
2544 7124 0.969894 GTAGTCAGATCGGATGGGGG 59.030 60.000 0.00 0.00 0.00 5.40
2545 7125 0.857675 TAGTCAGATCGGATGGGGGA 59.142 55.000 0.00 0.00 0.00 4.81
2546 7126 0.760945 AGTCAGATCGGATGGGGGAC 60.761 60.000 0.00 0.00 0.00 4.46
2547 7127 1.832608 TCAGATCGGATGGGGGACG 60.833 63.158 0.00 0.00 0.00 4.79
2548 7128 2.524394 AGATCGGATGGGGGACGG 60.524 66.667 0.00 0.00 0.00 4.79
2549 7129 3.626924 GATCGGATGGGGGACGGG 61.627 72.222 0.00 0.00 0.00 5.28
2550 7130 4.166378 ATCGGATGGGGGACGGGA 62.166 66.667 0.00 0.00 0.00 5.14
2551 7131 3.484379 ATCGGATGGGGGACGGGAT 62.484 63.158 0.00 0.00 0.00 3.85
2552 7132 2.983706 ATCGGATGGGGGACGGGATT 62.984 60.000 0.00 0.00 0.00 3.01
2553 7133 2.515901 GGATGGGGGACGGGATTG 59.484 66.667 0.00 0.00 0.00 2.67
2554 7134 2.515901 GATGGGGGACGGGATTGG 59.484 66.667 0.00 0.00 0.00 3.16
2555 7135 3.103213 ATGGGGGACGGGATTGGG 61.103 66.667 0.00 0.00 0.00 4.12
2556 7136 3.982196 ATGGGGGACGGGATTGGGT 62.982 63.158 0.00 0.00 0.00 4.51
2557 7137 3.805497 GGGGGACGGGATTGGGTC 61.805 72.222 0.00 0.00 0.00 4.46
2558 7138 4.171103 GGGGACGGGATTGGGTCG 62.171 72.222 0.00 0.00 33.99 4.79
2559 7139 4.171103 GGGACGGGATTGGGTCGG 62.171 72.222 0.00 0.00 33.99 4.79
2560 7140 4.851179 GGACGGGATTGGGTCGGC 62.851 72.222 0.00 0.00 33.99 5.54
2561 7141 4.851179 GACGGGATTGGGTCGGCC 62.851 72.222 0.00 0.00 0.00 6.13
2563 7143 4.856801 CGGGATTGGGTCGGCCTG 62.857 72.222 5.77 0.00 34.45 4.85
2564 7144 4.506255 GGGATTGGGTCGGCCTGG 62.506 72.222 5.77 0.00 34.45 4.45
2566 7146 4.115199 GATTGGGTCGGCCTGGCT 62.115 66.667 19.68 0.00 34.45 4.75
2567 7147 4.431131 ATTGGGTCGGCCTGGCTG 62.431 66.667 21.69 21.69 36.06 4.85
2577 7157 4.517934 CCTGGCTGGCCATGGAGG 62.518 72.222 18.40 8.37 46.15 4.30
2595 7175 3.854669 CGCAGCTCCTAGGGGTGG 61.855 72.222 22.79 12.65 33.43 4.61
2596 7176 4.182433 GCAGCTCCTAGGGGTGGC 62.182 72.222 22.79 17.49 33.43 5.01
2597 7177 3.854669 CAGCTCCTAGGGGTGGCG 61.855 72.222 11.24 3.24 37.44 5.69
2600 7180 2.281091 CTCCTAGGGGTGGCGGTA 59.719 66.667 9.46 0.00 0.00 4.02
2601 7181 2.042639 TCCTAGGGGTGGCGGTAC 60.043 66.667 9.46 0.00 0.00 3.34
2602 7182 2.364579 CCTAGGGGTGGCGGTACA 60.365 66.667 0.00 0.00 0.00 2.90
2603 7183 2.728435 CCTAGGGGTGGCGGTACAC 61.728 68.421 0.00 0.00 40.60 2.90
2604 7184 1.684734 CTAGGGGTGGCGGTACACT 60.685 63.158 0.00 0.00 41.09 3.55
2605 7185 1.956629 CTAGGGGTGGCGGTACACTG 61.957 65.000 0.00 0.00 41.09 3.66
2606 7186 4.404098 GGGGTGGCGGTACACTGG 62.404 72.222 0.00 0.00 41.09 4.00
2607 7187 4.404098 GGGTGGCGGTACACTGGG 62.404 72.222 0.00 0.00 41.09 4.45
2608 7188 4.404098 GGTGGCGGTACACTGGGG 62.404 72.222 0.00 0.00 41.09 4.96
2609 7189 4.404098 GTGGCGGTACACTGGGGG 62.404 72.222 0.00 0.00 38.32 5.40
2610 7190 4.966274 TGGCGGTACACTGGGGGT 62.966 66.667 0.00 0.00 0.00 4.95
2630 7210 4.351054 GGAGGGGTGCAGGGTGTG 62.351 72.222 0.00 0.00 0.00 3.82
2696 7276 4.154347 CCCAGGCAGGAGCTCGTC 62.154 72.222 5.82 0.00 41.22 4.20
2697 7277 4.504916 CCAGGCAGGAGCTCGTCG 62.505 72.222 5.82 3.90 41.22 5.12
2702 7282 4.421479 CAGGAGCTCGTCGCCGTT 62.421 66.667 5.82 0.00 39.89 4.44
2703 7283 3.681835 AGGAGCTCGTCGCCGTTT 61.682 61.111 7.83 0.00 39.89 3.60
2704 7284 2.737376 GGAGCTCGTCGCCGTTTT 60.737 61.111 7.83 0.00 40.39 2.43
2705 7285 2.315386 GGAGCTCGTCGCCGTTTTT 61.315 57.895 7.83 0.00 40.39 1.94
2706 7286 1.130009 GAGCTCGTCGCCGTTTTTC 59.870 57.895 0.00 0.00 40.39 2.29
2707 7287 1.282930 GAGCTCGTCGCCGTTTTTCT 61.283 55.000 0.00 0.00 40.39 2.52
2708 7288 0.878961 AGCTCGTCGCCGTTTTTCTT 60.879 50.000 0.00 0.00 40.39 2.52
2709 7289 0.721483 GCTCGTCGCCGTTTTTCTTG 60.721 55.000 0.00 0.00 35.01 3.02
2710 7290 0.110823 CTCGTCGCCGTTTTTCTTGG 60.111 55.000 0.00 0.00 35.01 3.61
2711 7291 1.724581 CGTCGCCGTTTTTCTTGGC 60.725 57.895 0.00 0.00 45.39 4.52
2712 7292 1.652563 GTCGCCGTTTTTCTTGGCT 59.347 52.632 0.60 0.00 46.67 4.75
2713 7293 0.660300 GTCGCCGTTTTTCTTGGCTG 60.660 55.000 0.60 0.00 46.67 4.85
2714 7294 0.816018 TCGCCGTTTTTCTTGGCTGA 60.816 50.000 0.60 0.00 46.67 4.26
2715 7295 0.660300 CGCCGTTTTTCTTGGCTGAC 60.660 55.000 0.60 0.00 46.67 3.51
2716 7296 0.318699 GCCGTTTTTCTTGGCTGACC 60.319 55.000 0.00 0.00 45.40 4.02
2717 7297 0.040425 CCGTTTTTCTTGGCTGACCG 60.040 55.000 0.00 0.00 39.70 4.79
2718 7298 0.040425 CGTTTTTCTTGGCTGACCGG 60.040 55.000 0.00 0.00 39.70 5.28
2719 7299 0.313987 GTTTTTCTTGGCTGACCGGG 59.686 55.000 6.32 0.00 39.70 5.73
2720 7300 0.183971 TTTTTCTTGGCTGACCGGGA 59.816 50.000 6.32 0.00 39.70 5.14
2721 7301 0.250727 TTTTCTTGGCTGACCGGGAG 60.251 55.000 6.32 1.66 39.70 4.30
2745 7325 3.291611 GCAAGGGCCATGGTGAAG 58.708 61.111 14.67 1.29 0.00 3.02
2746 7326 2.353610 GCAAGGGCCATGGTGAAGG 61.354 63.158 14.67 2.01 0.00 3.46
2747 7327 1.383799 CAAGGGCCATGGTGAAGGA 59.616 57.895 14.67 0.00 0.00 3.36
2748 7328 0.251742 CAAGGGCCATGGTGAAGGAA 60.252 55.000 14.67 0.00 0.00 3.36
2749 7329 0.486879 AAGGGCCATGGTGAAGGAAA 59.513 50.000 14.67 0.00 0.00 3.13
2750 7330 0.712380 AGGGCCATGGTGAAGGAAAT 59.288 50.000 14.67 0.00 0.00 2.17
2751 7331 1.929494 AGGGCCATGGTGAAGGAAATA 59.071 47.619 14.67 0.00 0.00 1.40
2752 7332 2.519691 AGGGCCATGGTGAAGGAAATAT 59.480 45.455 14.67 0.00 0.00 1.28
2753 7333 2.629617 GGGCCATGGTGAAGGAAATATG 59.370 50.000 14.67 0.00 0.00 1.78
2754 7334 2.036346 GGCCATGGTGAAGGAAATATGC 59.964 50.000 14.67 0.00 0.00 3.14
2755 7335 2.036346 GCCATGGTGAAGGAAATATGCC 59.964 50.000 14.67 0.00 0.00 4.40
2756 7336 2.629617 CCATGGTGAAGGAAATATGCCC 59.370 50.000 2.57 0.00 0.00 5.36
2757 7337 3.569491 CATGGTGAAGGAAATATGCCCT 58.431 45.455 0.00 0.00 0.00 5.19
2758 7338 4.447616 CCATGGTGAAGGAAATATGCCCTA 60.448 45.833 2.57 0.00 31.36 3.53
2759 7339 4.437682 TGGTGAAGGAAATATGCCCTAG 57.562 45.455 0.00 0.00 31.36 3.02
2760 7340 4.044308 TGGTGAAGGAAATATGCCCTAGA 58.956 43.478 0.00 0.00 31.36 2.43
2761 7341 4.103153 TGGTGAAGGAAATATGCCCTAGAG 59.897 45.833 0.00 0.00 31.36 2.43
2762 7342 4.505742 GGTGAAGGAAATATGCCCTAGAGG 60.506 50.000 0.00 0.00 39.47 3.69
2778 7358 7.881775 CCCTAGAGGCAATAATAAAGTTGTT 57.118 36.000 0.00 0.00 0.00 2.83
2779 7359 8.974060 CCCTAGAGGCAATAATAAAGTTGTTA 57.026 34.615 0.00 0.00 0.00 2.41
2780 7360 9.574516 CCCTAGAGGCAATAATAAAGTTGTTAT 57.425 33.333 0.00 0.00 0.00 1.89
2840 7420 7.514784 TCATGCTAGAATTGTATTGATTGGG 57.485 36.000 0.00 0.00 0.00 4.12
2841 7421 7.289310 TCATGCTAGAATTGTATTGATTGGGA 58.711 34.615 0.00 0.00 0.00 4.37
2842 7422 7.779326 TCATGCTAGAATTGTATTGATTGGGAA 59.221 33.333 0.00 0.00 0.00 3.97
2843 7423 7.333528 TGCTAGAATTGTATTGATTGGGAAC 57.666 36.000 0.00 0.00 0.00 3.62
2844 7424 7.118723 TGCTAGAATTGTATTGATTGGGAACT 58.881 34.615 0.00 0.00 0.00 3.01
2845 7425 7.615365 TGCTAGAATTGTATTGATTGGGAACTT 59.385 33.333 0.00 0.00 0.00 2.66
2846 7426 9.120538 GCTAGAATTGTATTGATTGGGAACTTA 57.879 33.333 0.00 0.00 0.00 2.24
2857 7437 8.415950 TTGATTGGGAACTTAAATACATGTGT 57.584 30.769 9.11 0.00 0.00 3.72
2858 7438 7.825681 TGATTGGGAACTTAAATACATGTGTG 58.174 34.615 9.11 0.00 0.00 3.82
2859 7439 7.667635 TGATTGGGAACTTAAATACATGTGTGA 59.332 33.333 9.11 0.00 0.00 3.58
2860 7440 7.825331 TTGGGAACTTAAATACATGTGTGAA 57.175 32.000 9.11 0.00 0.00 3.18
2861 7441 8.415950 TTGGGAACTTAAATACATGTGTGAAT 57.584 30.769 9.11 0.00 0.00 2.57
2862 7442 9.521841 TTGGGAACTTAAATACATGTGTGAATA 57.478 29.630 9.11 0.00 0.00 1.75
2863 7443 8.952278 TGGGAACTTAAATACATGTGTGAATAC 58.048 33.333 9.11 0.00 0.00 1.89
2864 7444 8.952278 GGGAACTTAAATACATGTGTGAATACA 58.048 33.333 9.11 0.00 34.63 2.29
2876 7456 8.726988 ACATGTGTGAATACATAAACAACTACC 58.273 33.333 0.00 0.00 39.17 3.18
2877 7457 7.354025 TGTGTGAATACATAAACAACTACCG 57.646 36.000 0.00 0.00 39.39 4.02
2878 7458 6.930164 TGTGTGAATACATAAACAACTACCGT 59.070 34.615 0.00 0.00 39.39 4.83
2879 7459 7.095565 TGTGTGAATACATAAACAACTACCGTG 60.096 37.037 0.00 0.00 39.39 4.94
2880 7460 6.930164 TGTGAATACATAAACAACTACCGTGT 59.070 34.615 0.00 0.00 0.00 4.49
2881 7461 8.087136 TGTGAATACATAAACAACTACCGTGTA 58.913 33.333 0.00 0.00 0.00 2.90
2882 7462 8.375465 GTGAATACATAAACAACTACCGTGTAC 58.625 37.037 0.00 0.00 0.00 2.90
2883 7463 7.545265 TGAATACATAAACAACTACCGTGTACC 59.455 37.037 0.00 0.00 0.00 3.34
2884 7464 5.473066 ACATAAACAACTACCGTGTACCT 57.527 39.130 0.00 0.00 0.00 3.08
2885 7465 6.588719 ACATAAACAACTACCGTGTACCTA 57.411 37.500 0.00 0.00 0.00 3.08
2886 7466 6.624423 ACATAAACAACTACCGTGTACCTAG 58.376 40.000 0.00 0.00 0.00 3.02
2887 7467 6.209391 ACATAAACAACTACCGTGTACCTAGT 59.791 38.462 0.00 0.00 0.00 2.57
2888 7468 7.393234 ACATAAACAACTACCGTGTACCTAGTA 59.607 37.037 0.00 0.00 0.00 1.82
2889 7469 6.648879 AAACAACTACCGTGTACCTAGTAA 57.351 37.500 0.00 0.00 0.00 2.24
2890 7470 5.886960 ACAACTACCGTGTACCTAGTAAG 57.113 43.478 0.00 0.00 0.00 2.34
2891 7471 4.156739 ACAACTACCGTGTACCTAGTAAGC 59.843 45.833 0.00 0.00 0.00 3.09
2892 7472 3.282885 ACTACCGTGTACCTAGTAAGCC 58.717 50.000 0.00 0.00 0.00 4.35
2893 7473 2.521547 ACCGTGTACCTAGTAAGCCT 57.478 50.000 0.00 0.00 0.00 4.58
2894 7474 2.373224 ACCGTGTACCTAGTAAGCCTC 58.627 52.381 0.00 0.00 0.00 4.70
2895 7475 2.025510 ACCGTGTACCTAGTAAGCCTCT 60.026 50.000 0.00 0.00 0.00 3.69
2896 7476 3.200825 ACCGTGTACCTAGTAAGCCTCTA 59.799 47.826 0.00 0.00 0.00 2.43
2897 7477 3.563390 CCGTGTACCTAGTAAGCCTCTAC 59.437 52.174 0.00 0.00 0.00 2.59
2898 7478 4.450053 CGTGTACCTAGTAAGCCTCTACT 58.550 47.826 0.00 0.00 36.16 2.57
2899 7479 5.453903 CCGTGTACCTAGTAAGCCTCTACTA 60.454 48.000 0.00 0.00 34.03 1.82
2900 7480 5.695816 CGTGTACCTAGTAAGCCTCTACTAG 59.304 48.000 14.24 14.24 45.92 2.57
2907 7487 5.899631 AGTAAGCCTCTACTAGACTAGCT 57.100 43.478 9.52 0.00 30.13 3.32
2908 7488 5.861727 AGTAAGCCTCTACTAGACTAGCTC 58.138 45.833 9.52 0.00 30.13 4.09
2909 7489 3.396260 AGCCTCTACTAGACTAGCTCG 57.604 52.381 9.52 0.00 0.00 5.03
2910 7490 2.701951 AGCCTCTACTAGACTAGCTCGT 59.298 50.000 9.52 0.00 0.00 4.18
2911 7491 3.135167 AGCCTCTACTAGACTAGCTCGTT 59.865 47.826 9.52 0.00 0.00 3.85
2912 7492 3.249080 GCCTCTACTAGACTAGCTCGTTG 59.751 52.174 9.52 0.00 0.00 4.10
2913 7493 4.695396 CCTCTACTAGACTAGCTCGTTGA 58.305 47.826 9.52 0.00 0.00 3.18
2914 7494 5.302360 CCTCTACTAGACTAGCTCGTTGAT 58.698 45.833 9.52 0.00 0.00 2.57
2915 7495 5.407387 CCTCTACTAGACTAGCTCGTTGATC 59.593 48.000 9.52 0.00 0.00 2.92
2916 7496 5.915175 TCTACTAGACTAGCTCGTTGATCA 58.085 41.667 9.52 0.00 0.00 2.92
2917 7497 6.346896 TCTACTAGACTAGCTCGTTGATCAA 58.653 40.000 9.52 3.38 0.00 2.57
2918 7498 5.899120 ACTAGACTAGCTCGTTGATCAAA 57.101 39.130 10.35 0.00 0.00 2.69
2919 7499 5.885881 ACTAGACTAGCTCGTTGATCAAAG 58.114 41.667 10.35 12.64 0.00 2.77
2920 7500 5.648526 ACTAGACTAGCTCGTTGATCAAAGA 59.351 40.000 20.62 20.62 0.00 2.52
2921 7501 5.590530 AGACTAGCTCGTTGATCAAAGAT 57.409 39.130 21.83 12.82 0.00 2.40
2922 7502 5.347342 AGACTAGCTCGTTGATCAAAGATG 58.653 41.667 21.83 16.63 0.00 2.90
2923 7503 4.437239 ACTAGCTCGTTGATCAAAGATGG 58.563 43.478 21.83 14.18 0.00 3.51
2924 7504 3.340814 AGCTCGTTGATCAAAGATGGT 57.659 42.857 21.83 17.63 0.00 3.55
2925 7505 3.679389 AGCTCGTTGATCAAAGATGGTT 58.321 40.909 21.83 8.86 0.00 3.67
2926 7506 4.832248 AGCTCGTTGATCAAAGATGGTTA 58.168 39.130 21.83 1.90 0.00 2.85
2927 7507 5.245531 AGCTCGTTGATCAAAGATGGTTAA 58.754 37.500 21.83 1.24 0.00 2.01
2928 7508 5.352569 AGCTCGTTGATCAAAGATGGTTAAG 59.647 40.000 21.83 11.16 0.00 1.85
2929 7509 5.351465 GCTCGTTGATCAAAGATGGTTAAGA 59.649 40.000 21.83 0.00 0.00 2.10
2930 7510 6.037610 GCTCGTTGATCAAAGATGGTTAAGAT 59.962 38.462 21.83 0.00 0.00 2.40
2931 7511 7.414540 GCTCGTTGATCAAAGATGGTTAAGATT 60.415 37.037 21.83 0.00 0.00 2.40
2932 7512 8.335532 TCGTTGATCAAAGATGGTTAAGATTT 57.664 30.769 18.50 0.00 0.00 2.17
2933 7513 8.450964 TCGTTGATCAAAGATGGTTAAGATTTC 58.549 33.333 18.50 0.00 0.00 2.17
2934 7514 7.698130 CGTTGATCAAAGATGGTTAAGATTTCC 59.302 37.037 15.34 0.00 0.00 3.13
2935 7515 8.743714 GTTGATCAAAGATGGTTAAGATTTCCT 58.256 33.333 10.35 0.00 0.00 3.36
2936 7516 9.973661 TTGATCAAAGATGGTTAAGATTTCCTA 57.026 29.630 5.45 0.00 0.00 2.94
2937 7517 9.973661 TGATCAAAGATGGTTAAGATTTCCTAA 57.026 29.630 0.00 0.00 0.00 2.69
2939 7519 8.575649 TCAAAGATGGTTAAGATTTCCTAACC 57.424 34.615 10.07 10.07 41.59 2.85
2944 7524 6.395780 TGGTTAAGATTTCCTAACCATGGA 57.604 37.500 21.47 0.00 44.73 3.41
2945 7525 6.184789 TGGTTAAGATTTCCTAACCATGGAC 58.815 40.000 21.47 0.00 44.73 4.02
2946 7526 6.184789 GGTTAAGATTTCCTAACCATGGACA 58.815 40.000 21.47 4.12 41.06 4.02
2947 7527 6.833933 GGTTAAGATTTCCTAACCATGGACAT 59.166 38.462 21.47 6.72 41.06 3.06
2948 7528 7.201821 GGTTAAGATTTCCTAACCATGGACATG 60.202 40.741 21.47 5.33 41.06 3.21
2949 7529 5.456921 AGATTTCCTAACCATGGACATGT 57.543 39.130 21.47 0.00 37.11 3.21
2950 7530 5.195940 AGATTTCCTAACCATGGACATGTG 58.804 41.667 21.47 1.48 37.11 3.21
2951 7531 4.380843 TTTCCTAACCATGGACATGTGT 57.619 40.909 21.47 6.17 37.11 3.72
2952 7532 4.380843 TTCCTAACCATGGACATGTGTT 57.619 40.909 21.47 17.17 37.11 3.32
2953 7533 3.684908 TCCTAACCATGGACATGTGTTG 58.315 45.455 21.47 0.00 37.11 3.33
2954 7534 3.073798 TCCTAACCATGGACATGTGTTGT 59.926 43.478 21.47 7.42 42.79 3.32
2967 7547 5.698832 ACATGTGTTGTCATTTGATAACGG 58.301 37.500 13.29 7.25 45.39 4.44
2968 7548 4.757799 TGTGTTGTCATTTGATAACGGG 57.242 40.909 13.29 0.00 45.39 5.28
2969 7549 4.390264 TGTGTTGTCATTTGATAACGGGA 58.610 39.130 13.29 0.63 45.39 5.14
2970 7550 5.007034 TGTGTTGTCATTTGATAACGGGAT 58.993 37.500 13.29 0.00 45.39 3.85
2971 7551 5.123186 TGTGTTGTCATTTGATAACGGGATC 59.877 40.000 13.29 0.00 45.39 3.36
2972 7552 5.123186 GTGTTGTCATTTGATAACGGGATCA 59.877 40.000 13.29 0.00 45.39 2.92
2973 7553 5.123186 TGTTGTCATTTGATAACGGGATCAC 59.877 40.000 13.29 0.00 45.39 3.06
2974 7554 4.837972 TGTCATTTGATAACGGGATCACA 58.162 39.130 0.00 0.00 35.56 3.58
2975 7555 5.436175 TGTCATTTGATAACGGGATCACAT 58.564 37.500 0.00 0.00 35.56 3.21
2976 7556 5.527214 TGTCATTTGATAACGGGATCACATC 59.473 40.000 0.00 0.00 35.56 3.06
2977 7557 5.527214 GTCATTTGATAACGGGATCACATCA 59.473 40.000 0.00 0.00 35.56 3.07
2978 7558 6.205464 GTCATTTGATAACGGGATCACATCAT 59.795 38.462 0.00 0.00 35.56 2.45
2979 7559 6.772233 TCATTTGATAACGGGATCACATCATT 59.228 34.615 0.00 0.00 35.56 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 96 0.038166 ACCCATAGTTGTGGTGCCAG 59.962 55.000 0.00 0.00 37.57 4.85
209 210 1.992557 AGGGCCCAAGATAGACACAAA 59.007 47.619 27.56 0.00 0.00 2.83
210 211 1.559682 GAGGGCCCAAGATAGACACAA 59.440 52.381 27.56 0.00 0.00 3.33
312 313 1.367471 CCAAGAGCACTCCGTGACA 59.633 57.895 0.00 0.00 35.23 3.58
476 477 2.356313 CAAGTGCGACGTGCTCCT 60.356 61.111 0.00 0.00 46.63 3.69
518 519 1.446099 GCGAACTGCTGATCGGTGA 60.446 57.895 21.35 0.00 41.73 4.02
538 539 3.118738 GGTAGTCCCTTCGTCATGACATT 60.119 47.826 24.93 4.44 0.00 2.71
682 717 4.811557 GTCTCCCAAGATACAAGTGCATAC 59.188 45.833 0.00 0.00 33.08 2.39
686 721 3.334583 TGTCTCCCAAGATACAAGTGC 57.665 47.619 0.00 0.00 33.08 4.40
712 749 1.952102 GATACAAGGGGTGCGACCGA 61.952 60.000 0.00 0.00 39.83 4.69
796 834 2.321668 CTTGTGTGCGGTGTGTGGTG 62.322 60.000 0.00 0.00 0.00 4.17
854 892 4.199310 CTGCTGTTCTAGAGTAGAGAGCT 58.801 47.826 11.34 0.00 40.26 4.09
855 893 3.945285 ACTGCTGTTCTAGAGTAGAGAGC 59.055 47.826 4.71 4.71 40.13 4.09
858 896 5.648526 TGGTAACTGCTGTTCTAGAGTAGAG 59.351 44.000 12.67 0.00 37.59 2.43
859 897 5.567430 TGGTAACTGCTGTTCTAGAGTAGA 58.433 41.667 12.67 0.00 37.59 2.59
860 898 5.899120 TGGTAACTGCTGTTCTAGAGTAG 57.101 43.478 12.67 0.00 37.59 2.57
861 899 5.127194 CCATGGTAACTGCTGTTCTAGAGTA 59.873 44.000 12.67 0.00 37.59 2.59
862 900 4.081420 CCATGGTAACTGCTGTTCTAGAGT 60.081 45.833 12.67 0.00 37.59 3.24
863 901 4.437239 CCATGGTAACTGCTGTTCTAGAG 58.563 47.826 12.67 2.28 37.59 2.43
865 903 2.939103 GCCATGGTAACTGCTGTTCTAG 59.061 50.000 14.67 0.63 37.59 2.43
866 904 2.304470 TGCCATGGTAACTGCTGTTCTA 59.696 45.455 14.67 3.73 37.59 2.10
867 905 1.073763 TGCCATGGTAACTGCTGTTCT 59.926 47.619 14.67 0.00 37.59 3.01
868 906 1.200020 GTGCCATGGTAACTGCTGTTC 59.800 52.381 14.67 5.02 37.59 3.18
869 907 1.247567 GTGCCATGGTAACTGCTGTT 58.752 50.000 14.67 13.80 39.98 3.16
870 908 0.955428 CGTGCCATGGTAACTGCTGT 60.955 55.000 14.67 0.00 37.61 4.40
871 909 1.647545 CCGTGCCATGGTAACTGCTG 61.648 60.000 14.67 0.10 37.61 4.41
877 923 2.433646 AAAGCCCCGTGCCATGGTAA 62.434 55.000 14.67 0.00 42.71 2.85
878 924 2.830186 GAAAGCCCCGTGCCATGGTA 62.830 60.000 14.67 5.86 42.71 3.25
891 937 2.684843 CGAGCACAGCCAGAAAGCC 61.685 63.158 0.00 0.00 0.00 4.35
949 995 3.593442 TGAACCTCTTGTCCAACCAAT 57.407 42.857 0.00 0.00 0.00 3.16
950 996 3.020984 GTTGAACCTCTTGTCCAACCAA 58.979 45.455 0.00 0.00 33.13 3.67
954 1000 2.285083 CGTGTTGAACCTCTTGTCCAA 58.715 47.619 0.00 0.00 0.00 3.53
1022 1070 1.081892 CTGGTTGAGGTTGAGCATCG 58.918 55.000 0.00 0.00 38.61 3.84
1182 1409 2.091112 CAAGCTGCGAGTCCAGACG 61.091 63.158 11.49 0.00 34.77 4.18
1186 1413 1.474330 TAGATCAAGCTGCGAGTCCA 58.526 50.000 0.00 0.00 0.00 4.02
1349 1635 1.541233 CGAACTGGTGCTCCTTCTTGT 60.541 52.381 6.34 0.00 34.23 3.16
1562 1857 2.092914 GGACCAGTTGATCGGGATCTTT 60.093 50.000 9.84 0.00 38.60 2.52
1694 2013 3.164977 TTGACGGTGCCCCACTCA 61.165 61.111 0.00 0.00 34.40 3.41
1723 2042 3.040147 AGTTGTAGCGCATGTAACTGT 57.960 42.857 11.47 0.00 31.00 3.55
1959 6538 7.807907 CCGTGAAATTTACATGCTTCTTTACTT 59.192 33.333 0.00 0.00 0.00 2.24
1962 6541 7.081349 CACCGTGAAATTTACATGCTTCTTTA 58.919 34.615 0.00 0.00 0.00 1.85
1984 6564 1.597663 CCGTATCGATTCAAAGGCACC 59.402 52.381 1.71 0.00 0.00 5.01
2439 7019 3.839432 GAGGAAGACCCCTCGCCG 61.839 72.222 0.00 0.00 42.80 6.46
2447 7027 1.498264 GGAAGGGGTAGAGGAAGACC 58.502 60.000 0.00 0.00 34.75 3.85
2448 7028 1.498264 GGGAAGGGGTAGAGGAAGAC 58.502 60.000 0.00 0.00 0.00 3.01
2449 7029 0.342313 GGGGAAGGGGTAGAGGAAGA 59.658 60.000 0.00 0.00 0.00 2.87
2450 7030 0.694783 GGGGGAAGGGGTAGAGGAAG 60.695 65.000 0.00 0.00 0.00 3.46
2451 7031 1.399057 GGGGGAAGGGGTAGAGGAA 59.601 63.158 0.00 0.00 0.00 3.36
2452 7032 3.126044 GGGGGAAGGGGTAGAGGA 58.874 66.667 0.00 0.00 0.00 3.71
2473 7053 3.827898 GAGGGAGACGCCACGAGG 61.828 72.222 0.00 0.00 38.95 4.63
2474 7054 3.062466 TGAGGGAGACGCCACGAG 61.062 66.667 0.00 0.00 38.95 4.18
2475 7055 3.371063 GTGAGGGAGACGCCACGA 61.371 66.667 0.00 0.00 38.95 4.35
2476 7056 4.778415 CGTGAGGGAGACGCCACG 62.778 72.222 0.00 0.00 45.33 4.94
2481 7061 2.766400 GGAGAGCGTGAGGGAGACG 61.766 68.421 0.00 0.00 39.87 4.18
2482 7062 1.379309 AGGAGAGCGTGAGGGAGAC 60.379 63.158 0.00 0.00 0.00 3.36
2483 7063 1.077357 GAGGAGAGCGTGAGGGAGA 60.077 63.158 0.00 0.00 0.00 3.71
2484 7064 2.477176 CGAGGAGAGCGTGAGGGAG 61.477 68.421 0.00 0.00 0.00 4.30
2485 7065 2.438614 CGAGGAGAGCGTGAGGGA 60.439 66.667 0.00 0.00 0.00 4.20
2486 7066 4.200283 GCGAGGAGAGCGTGAGGG 62.200 72.222 0.00 0.00 0.00 4.30
2487 7067 4.200283 GGCGAGGAGAGCGTGAGG 62.200 72.222 0.00 0.00 35.00 3.86
2488 7068 4.544689 CGGCGAGGAGAGCGTGAG 62.545 72.222 0.00 0.00 35.00 3.51
2493 7073 4.264638 GAGAGCGGCGAGGAGAGC 62.265 72.222 12.98 0.00 0.00 4.09
2494 7074 3.947841 CGAGAGCGGCGAGGAGAG 61.948 72.222 12.98 0.00 0.00 3.20
2495 7075 4.779966 ACGAGAGCGGCGAGGAGA 62.780 66.667 12.98 0.00 43.17 3.71
2496 7076 4.544689 CACGAGAGCGGCGAGGAG 62.545 72.222 12.98 0.00 43.17 3.69
2503 7083 3.691342 TGAACCCCACGAGAGCGG 61.691 66.667 0.00 0.00 43.17 5.52
2504 7084 2.432628 GTGAACCCCACGAGAGCG 60.433 66.667 0.00 0.00 44.79 5.03
2510 7090 5.948504 CTGACTACAGTGTGAACCCCACG 62.949 56.522 5.88 0.00 40.63 4.94
2511 7091 1.414919 TGACTACAGTGTGAACCCCAC 59.585 52.381 5.88 0.00 45.88 4.61
2512 7092 1.691976 CTGACTACAGTGTGAACCCCA 59.308 52.381 5.88 0.00 39.11 4.96
2513 7093 1.968493 TCTGACTACAGTGTGAACCCC 59.032 52.381 5.88 0.00 43.81 4.95
2514 7094 3.673594 CGATCTGACTACAGTGTGAACCC 60.674 52.174 5.88 0.00 43.81 4.11
2515 7095 3.502920 CGATCTGACTACAGTGTGAACC 58.497 50.000 5.88 0.00 43.81 3.62
2516 7096 3.190744 TCCGATCTGACTACAGTGTGAAC 59.809 47.826 5.88 0.00 43.81 3.18
2517 7097 3.418047 TCCGATCTGACTACAGTGTGAA 58.582 45.455 5.88 0.00 43.81 3.18
2518 7098 3.067684 TCCGATCTGACTACAGTGTGA 57.932 47.619 5.88 0.00 43.81 3.58
2519 7099 3.489908 CCATCCGATCTGACTACAGTGTG 60.490 52.174 5.88 0.00 43.81 3.82
2520 7100 2.690497 CCATCCGATCTGACTACAGTGT 59.310 50.000 0.00 0.00 43.81 3.55
2521 7101 2.035193 CCCATCCGATCTGACTACAGTG 59.965 54.545 0.00 0.00 43.81 3.66
2522 7102 2.311463 CCCATCCGATCTGACTACAGT 58.689 52.381 0.00 0.00 43.81 3.55
2523 7103 1.615883 CCCCATCCGATCTGACTACAG 59.384 57.143 0.00 0.00 44.66 2.74
2524 7104 1.704641 CCCCATCCGATCTGACTACA 58.295 55.000 0.00 0.00 0.00 2.74
2525 7105 0.969894 CCCCCATCCGATCTGACTAC 59.030 60.000 0.00 0.00 0.00 2.73
2526 7106 0.857675 TCCCCCATCCGATCTGACTA 59.142 55.000 0.00 0.00 0.00 2.59
2527 7107 0.760945 GTCCCCCATCCGATCTGACT 60.761 60.000 0.00 0.00 0.00 3.41
2528 7108 1.749033 GTCCCCCATCCGATCTGAC 59.251 63.158 0.00 0.00 0.00 3.51
2529 7109 1.832608 CGTCCCCCATCCGATCTGA 60.833 63.158 0.00 0.00 0.00 3.27
2530 7110 2.737180 CGTCCCCCATCCGATCTG 59.263 66.667 0.00 0.00 0.00 2.90
2531 7111 2.524394 CCGTCCCCCATCCGATCT 60.524 66.667 0.00 0.00 0.00 2.75
2532 7112 3.626924 CCCGTCCCCCATCCGATC 61.627 72.222 0.00 0.00 0.00 3.69
2533 7113 2.983706 AATCCCGTCCCCCATCCGAT 62.984 60.000 0.00 0.00 0.00 4.18
2534 7114 3.707025 AATCCCGTCCCCCATCCGA 62.707 63.158 0.00 0.00 0.00 4.55
2535 7115 3.168528 AATCCCGTCCCCCATCCG 61.169 66.667 0.00 0.00 0.00 4.18
2536 7116 2.515901 CAATCCCGTCCCCCATCC 59.484 66.667 0.00 0.00 0.00 3.51
2537 7117 2.515901 CCAATCCCGTCCCCCATC 59.484 66.667 0.00 0.00 0.00 3.51
2538 7118 3.103213 CCCAATCCCGTCCCCCAT 61.103 66.667 0.00 0.00 0.00 4.00
2539 7119 4.686437 ACCCAATCCCGTCCCCCA 62.686 66.667 0.00 0.00 0.00 4.96
2540 7120 3.805497 GACCCAATCCCGTCCCCC 61.805 72.222 0.00 0.00 0.00 5.40
2541 7121 4.171103 CGACCCAATCCCGTCCCC 62.171 72.222 0.00 0.00 0.00 4.81
2542 7122 4.171103 CCGACCCAATCCCGTCCC 62.171 72.222 0.00 0.00 0.00 4.46
2543 7123 4.851179 GCCGACCCAATCCCGTCC 62.851 72.222 0.00 0.00 0.00 4.79
2544 7124 4.851179 GGCCGACCCAATCCCGTC 62.851 72.222 0.00 0.00 0.00 4.79
2546 7126 4.856801 CAGGCCGACCCAATCCCG 62.857 72.222 0.00 0.00 36.11 5.14
2547 7127 4.506255 CCAGGCCGACCCAATCCC 62.506 72.222 0.00 0.00 36.11 3.85
2549 7129 4.115199 AGCCAGGCCGACCCAATC 62.115 66.667 8.22 0.00 36.11 2.67
2550 7130 4.431131 CAGCCAGGCCGACCCAAT 62.431 66.667 8.22 0.00 36.11 3.16
2574 7154 3.922640 CCCTAGGAGCTGCGCCTC 61.923 72.222 28.32 4.81 34.91 4.70
2577 7157 4.537433 CACCCCTAGGAGCTGCGC 62.537 72.222 11.48 0.00 36.73 6.09
2578 7158 3.854669 CCACCCCTAGGAGCTGCG 61.855 72.222 11.48 0.00 36.73 5.18
2579 7159 4.182433 GCCACCCCTAGGAGCTGC 62.182 72.222 11.48 0.00 36.73 5.25
2580 7160 3.854669 CGCCACCCCTAGGAGCTG 61.855 72.222 11.48 1.70 34.87 4.24
2583 7163 2.132352 GTACCGCCACCCCTAGGAG 61.132 68.421 11.48 0.00 36.73 3.69
2584 7164 2.042639 GTACCGCCACCCCTAGGA 60.043 66.667 11.48 0.00 36.73 2.94
2585 7165 2.364579 TGTACCGCCACCCCTAGG 60.365 66.667 0.06 0.06 40.04 3.02
2586 7166 1.684734 AGTGTACCGCCACCCCTAG 60.685 63.158 0.00 0.00 35.93 3.02
2587 7167 1.985662 CAGTGTACCGCCACCCCTA 60.986 63.158 0.00 0.00 35.93 3.53
2588 7168 3.319198 CAGTGTACCGCCACCCCT 61.319 66.667 0.00 0.00 35.93 4.79
2589 7169 4.404098 CCAGTGTACCGCCACCCC 62.404 72.222 0.00 0.00 35.93 4.95
2590 7170 4.404098 CCCAGTGTACCGCCACCC 62.404 72.222 0.00 0.00 35.93 4.61
2591 7171 4.404098 CCCCAGTGTACCGCCACC 62.404 72.222 0.00 0.00 35.93 4.61
2592 7172 4.404098 CCCCCAGTGTACCGCCAC 62.404 72.222 0.00 0.00 35.53 5.01
2593 7173 4.966274 ACCCCCAGTGTACCGCCA 62.966 66.667 0.00 0.00 0.00 5.69
2594 7174 4.404098 CACCCCCAGTGTACCGCC 62.404 72.222 0.00 0.00 41.93 6.13
2595 7175 4.404098 CCACCCCCAGTGTACCGC 62.404 72.222 0.00 0.00 45.74 5.68
2596 7176 3.712907 CCCACCCCCAGTGTACCG 61.713 72.222 0.00 0.00 45.74 4.02
2597 7177 3.335729 CCCCACCCCCAGTGTACC 61.336 72.222 0.00 0.00 45.74 3.34
2598 7178 2.204029 TCCCCACCCCCAGTGTAC 60.204 66.667 0.00 0.00 45.74 2.90
2599 7179 2.124085 CTCCCCACCCCCAGTGTA 59.876 66.667 0.00 0.00 45.74 2.90
2613 7193 4.351054 CACACCCTGCACCCCTCC 62.351 72.222 0.00 0.00 0.00 4.30
2679 7259 4.154347 GACGAGCTCCTGCCTGGG 62.154 72.222 8.47 0.00 40.80 4.45
2680 7260 4.504916 CGACGAGCTCCTGCCTGG 62.505 72.222 8.47 0.00 40.80 4.45
2694 7274 4.221873 GCCAAGAAAAACGGCGAC 57.778 55.556 16.62 0.00 35.79 5.19
2697 7277 0.318699 GGTCAGCCAAGAAAAACGGC 60.319 55.000 0.00 0.00 46.62 5.68
2698 7278 0.040425 CGGTCAGCCAAGAAAAACGG 60.040 55.000 0.00 0.00 34.09 4.44
2699 7279 0.040425 CCGGTCAGCCAAGAAAAACG 60.040 55.000 0.00 0.00 34.09 3.60
2700 7280 0.313987 CCCGGTCAGCCAAGAAAAAC 59.686 55.000 0.00 0.00 34.09 2.43
2701 7281 0.183971 TCCCGGTCAGCCAAGAAAAA 59.816 50.000 0.00 0.00 34.09 1.94
2702 7282 0.250727 CTCCCGGTCAGCCAAGAAAA 60.251 55.000 0.00 0.00 34.09 2.29
2703 7283 1.374947 CTCCCGGTCAGCCAAGAAA 59.625 57.895 0.00 0.00 34.09 2.52
2704 7284 2.592993 CCTCCCGGTCAGCCAAGAA 61.593 63.158 0.00 0.00 34.09 2.52
2705 7285 3.003173 CCTCCCGGTCAGCCAAGA 61.003 66.667 0.00 0.00 34.09 3.02
2706 7286 4.101448 CCCTCCCGGTCAGCCAAG 62.101 72.222 0.00 0.00 34.09 3.61
2707 7287 4.974438 ACCCTCCCGGTCAGCCAA 62.974 66.667 0.00 0.00 43.58 4.52
2728 7308 2.353610 CCTTCACCATGGCCCTTGC 61.354 63.158 13.04 0.00 0.00 4.01
2729 7309 0.251742 TTCCTTCACCATGGCCCTTG 60.252 55.000 13.04 2.13 0.00 3.61
2730 7310 0.486879 TTTCCTTCACCATGGCCCTT 59.513 50.000 13.04 0.00 0.00 3.95
2731 7311 0.712380 ATTTCCTTCACCATGGCCCT 59.288 50.000 13.04 0.00 0.00 5.19
2732 7312 2.452600 TATTTCCTTCACCATGGCCC 57.547 50.000 13.04 0.00 0.00 5.80
2733 7313 2.036346 GCATATTTCCTTCACCATGGCC 59.964 50.000 13.04 0.00 0.00 5.36
2734 7314 2.036346 GGCATATTTCCTTCACCATGGC 59.964 50.000 13.04 0.00 32.81 4.40
2735 7315 2.629617 GGGCATATTTCCTTCACCATGG 59.370 50.000 11.19 11.19 0.00 3.66
2736 7316 3.569491 AGGGCATATTTCCTTCACCATG 58.431 45.455 0.00 0.00 0.00 3.66
2737 7317 3.979501 AGGGCATATTTCCTTCACCAT 57.020 42.857 0.00 0.00 0.00 3.55
2738 7318 4.044308 TCTAGGGCATATTTCCTTCACCA 58.956 43.478 0.00 0.00 34.75 4.17
2739 7319 4.505742 CCTCTAGGGCATATTTCCTTCACC 60.506 50.000 0.00 0.00 34.75 4.02
2740 7320 4.646572 CCTCTAGGGCATATTTCCTTCAC 58.353 47.826 0.00 0.00 34.75 3.18
2741 7321 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
2754 7334 7.881775 AACAACTTTATTATTGCCTCTAGGG 57.118 36.000 0.00 0.00 35.18 3.53
2814 7394 8.582437 CCCAATCAATACAATTCTAGCATGAAT 58.418 33.333 0.00 0.00 38.19 2.57
2815 7395 7.779326 TCCCAATCAATACAATTCTAGCATGAA 59.221 33.333 0.00 0.00 0.00 2.57
2816 7396 7.289310 TCCCAATCAATACAATTCTAGCATGA 58.711 34.615 0.00 0.00 0.00 3.07
2817 7397 7.514784 TCCCAATCAATACAATTCTAGCATG 57.485 36.000 0.00 0.00 0.00 4.06
2818 7398 7.781693 AGTTCCCAATCAATACAATTCTAGCAT 59.218 33.333 0.00 0.00 0.00 3.79
2819 7399 7.118723 AGTTCCCAATCAATACAATTCTAGCA 58.881 34.615 0.00 0.00 0.00 3.49
2820 7400 7.573968 AGTTCCCAATCAATACAATTCTAGC 57.426 36.000 0.00 0.00 0.00 3.42
2831 7411 9.034800 ACACATGTATTTAAGTTCCCAATCAAT 57.965 29.630 0.00 0.00 0.00 2.57
2832 7412 8.303156 CACACATGTATTTAAGTTCCCAATCAA 58.697 33.333 0.00 0.00 0.00 2.57
2833 7413 7.667635 TCACACATGTATTTAAGTTCCCAATCA 59.332 33.333 0.00 0.00 0.00 2.57
2834 7414 8.050778 TCACACATGTATTTAAGTTCCCAATC 57.949 34.615 0.00 0.00 0.00 2.67
2835 7415 8.415950 TTCACACATGTATTTAAGTTCCCAAT 57.584 30.769 0.00 0.00 0.00 3.16
2836 7416 7.825331 TTCACACATGTATTTAAGTTCCCAA 57.175 32.000 0.00 0.00 0.00 4.12
2837 7417 8.952278 GTATTCACACATGTATTTAAGTTCCCA 58.048 33.333 0.00 0.00 0.00 4.37
2838 7418 8.952278 TGTATTCACACATGTATTTAAGTTCCC 58.048 33.333 0.00 0.00 0.00 3.97
2850 7430 8.726988 GGTAGTTGTTTATGTATTCACACATGT 58.273 33.333 0.00 0.00 39.46 3.21
2851 7431 7.902917 CGGTAGTTGTTTATGTATTCACACATG 59.097 37.037 0.00 0.00 39.46 3.21
2852 7432 7.604927 ACGGTAGTTGTTTATGTATTCACACAT 59.395 33.333 0.00 0.00 41.88 3.21
2853 7433 6.930164 ACGGTAGTTGTTTATGTATTCACACA 59.070 34.615 0.00 0.00 37.54 3.72
2854 7434 7.095523 ACACGGTAGTTGTTTATGTATTCACAC 60.096 37.037 0.00 0.00 37.54 3.82
2855 7435 6.930164 ACACGGTAGTTGTTTATGTATTCACA 59.070 34.615 0.00 0.00 39.52 3.58
2856 7436 7.355332 ACACGGTAGTTGTTTATGTATTCAC 57.645 36.000 0.00 0.00 0.00 3.18
2857 7437 7.545265 GGTACACGGTAGTTGTTTATGTATTCA 59.455 37.037 0.00 0.00 0.00 2.57
2858 7438 7.761249 AGGTACACGGTAGTTGTTTATGTATTC 59.239 37.037 0.00 0.00 0.00 1.75
2859 7439 7.614494 AGGTACACGGTAGTTGTTTATGTATT 58.386 34.615 0.00 0.00 0.00 1.89
2860 7440 7.174107 AGGTACACGGTAGTTGTTTATGTAT 57.826 36.000 0.00 0.00 0.00 2.29
2861 7441 6.588719 AGGTACACGGTAGTTGTTTATGTA 57.411 37.500 0.00 0.00 0.00 2.29
2862 7442 5.473066 AGGTACACGGTAGTTGTTTATGT 57.527 39.130 0.00 0.00 0.00 2.29
2863 7443 6.624423 ACTAGGTACACGGTAGTTGTTTATG 58.376 40.000 0.00 0.00 0.00 1.90
2864 7444 6.840780 ACTAGGTACACGGTAGTTGTTTAT 57.159 37.500 0.00 0.00 0.00 1.40
2865 7445 7.574967 GCTTACTAGGTACACGGTAGTTGTTTA 60.575 40.741 0.00 0.00 0.00 2.01
2866 7446 6.648879 TTACTAGGTACACGGTAGTTGTTT 57.351 37.500 0.00 0.00 0.00 2.83
2867 7447 5.335976 GCTTACTAGGTACACGGTAGTTGTT 60.336 44.000 0.00 0.00 0.00 2.83
2868 7448 4.156739 GCTTACTAGGTACACGGTAGTTGT 59.843 45.833 0.00 0.00 0.00 3.32
2869 7449 4.439289 GGCTTACTAGGTACACGGTAGTTG 60.439 50.000 0.00 0.00 0.00 3.16
2870 7450 3.696548 GGCTTACTAGGTACACGGTAGTT 59.303 47.826 0.00 0.00 0.00 2.24
2871 7451 3.054065 AGGCTTACTAGGTACACGGTAGT 60.054 47.826 0.00 0.00 0.00 2.73
2872 7452 3.549794 AGGCTTACTAGGTACACGGTAG 58.450 50.000 0.00 0.00 0.00 3.18
2873 7453 3.200825 AGAGGCTTACTAGGTACACGGTA 59.799 47.826 0.00 0.00 0.00 4.02
2874 7454 2.025510 AGAGGCTTACTAGGTACACGGT 60.026 50.000 0.00 0.00 0.00 4.83
2875 7455 2.652590 AGAGGCTTACTAGGTACACGG 58.347 52.381 0.00 0.00 0.00 4.94
2876 7456 4.450053 AGTAGAGGCTTACTAGGTACACG 58.550 47.826 7.35 0.00 32.25 4.49
2877 7457 6.705825 GTCTAGTAGAGGCTTACTAGGTACAC 59.294 46.154 26.08 19.09 46.84 2.90
2878 7458 6.614906 AGTCTAGTAGAGGCTTACTAGGTACA 59.385 42.308 26.08 14.79 46.84 2.90
2879 7459 7.066307 AGTCTAGTAGAGGCTTACTAGGTAC 57.934 44.000 26.08 21.35 46.84 3.34
2880 7460 7.039082 GCTAGTCTAGTAGAGGCTTACTAGGTA 60.039 44.444 26.08 20.48 46.84 3.08
2881 7461 6.239686 GCTAGTCTAGTAGAGGCTTACTAGGT 60.240 46.154 26.08 20.47 46.84 3.08
2882 7462 6.013984 AGCTAGTCTAGTAGAGGCTTACTAGG 60.014 46.154 26.08 18.07 46.84 3.02
2884 7464 6.294675 CGAGCTAGTCTAGTAGAGGCTTACTA 60.295 46.154 17.68 12.72 36.38 1.82
2885 7465 5.510179 CGAGCTAGTCTAGTAGAGGCTTACT 60.510 48.000 17.68 12.02 36.38 2.24
2886 7466 4.687483 CGAGCTAGTCTAGTAGAGGCTTAC 59.313 50.000 17.68 9.37 36.38 2.34
2887 7467 4.344679 ACGAGCTAGTCTAGTAGAGGCTTA 59.655 45.833 17.68 3.40 36.38 3.09
2888 7468 3.135167 ACGAGCTAGTCTAGTAGAGGCTT 59.865 47.826 17.68 6.12 36.38 4.35
2889 7469 2.701951 ACGAGCTAGTCTAGTAGAGGCT 59.298 50.000 17.02 17.02 44.48 4.58
2890 7470 3.116079 ACGAGCTAGTCTAGTAGAGGC 57.884 52.381 8.68 5.92 0.00 4.70
2891 7471 4.695396 TCAACGAGCTAGTCTAGTAGAGG 58.305 47.826 8.68 0.00 30.15 3.69
2892 7472 5.986741 TGATCAACGAGCTAGTCTAGTAGAG 59.013 44.000 8.68 1.49 30.15 2.43
2893 7473 5.915175 TGATCAACGAGCTAGTCTAGTAGA 58.085 41.667 8.68 0.00 30.15 2.59
2894 7474 6.606234 TTGATCAACGAGCTAGTCTAGTAG 57.394 41.667 3.38 3.39 30.15 2.57
2895 7475 6.822170 TCTTTGATCAACGAGCTAGTCTAGTA 59.178 38.462 7.89 0.00 30.15 1.82
2896 7476 5.648526 TCTTTGATCAACGAGCTAGTCTAGT 59.351 40.000 7.89 0.00 31.68 2.57
2897 7477 6.125327 TCTTTGATCAACGAGCTAGTCTAG 57.875 41.667 7.89 2.18 0.00 2.43
2898 7478 6.460261 CCATCTTTGATCAACGAGCTAGTCTA 60.460 42.308 18.24 0.00 0.00 2.59
2899 7479 5.347342 CATCTTTGATCAACGAGCTAGTCT 58.653 41.667 18.24 0.00 0.00 3.24
2900 7480 4.505922 CCATCTTTGATCAACGAGCTAGTC 59.494 45.833 18.24 0.00 0.00 2.59
2901 7481 4.081420 ACCATCTTTGATCAACGAGCTAGT 60.081 41.667 18.24 10.56 0.00 2.57
2902 7482 4.437239 ACCATCTTTGATCAACGAGCTAG 58.563 43.478 18.24 8.24 0.00 3.42
2903 7483 4.471904 ACCATCTTTGATCAACGAGCTA 57.528 40.909 18.24 0.00 0.00 3.32
2904 7484 3.340814 ACCATCTTTGATCAACGAGCT 57.659 42.857 18.24 2.03 0.00 4.09
2905 7485 5.351465 TCTTAACCATCTTTGATCAACGAGC 59.649 40.000 18.24 0.00 0.00 5.03
2906 7486 6.968131 TCTTAACCATCTTTGATCAACGAG 57.032 37.500 18.24 10.23 0.00 4.18
2907 7487 7.921786 AATCTTAACCATCTTTGATCAACGA 57.078 32.000 16.08 16.08 0.00 3.85
2908 7488 7.698130 GGAAATCTTAACCATCTTTGATCAACG 59.302 37.037 7.89 6.62 0.00 4.10
2909 7489 8.743714 AGGAAATCTTAACCATCTTTGATCAAC 58.256 33.333 7.89 0.00 0.00 3.18
2910 7490 8.884124 AGGAAATCTTAACCATCTTTGATCAA 57.116 30.769 3.38 3.38 0.00 2.57
2911 7491 9.973661 TTAGGAAATCTTAACCATCTTTGATCA 57.026 29.630 0.00 0.00 0.00 2.92
2923 7503 7.339466 ACATGTCCATGGTTAGGAAATCTTAAC 59.661 37.037 12.58 6.84 42.91 2.01
2924 7504 7.339212 CACATGTCCATGGTTAGGAAATCTTAA 59.661 37.037 12.58 0.00 42.91 1.85
2925 7505 6.828273 CACATGTCCATGGTTAGGAAATCTTA 59.172 38.462 12.58 0.00 42.91 2.10
2926 7506 5.653769 CACATGTCCATGGTTAGGAAATCTT 59.346 40.000 12.58 0.00 42.91 2.40
2927 7507 5.195940 CACATGTCCATGGTTAGGAAATCT 58.804 41.667 12.58 0.00 42.91 2.40
2928 7508 4.949856 ACACATGTCCATGGTTAGGAAATC 59.050 41.667 12.58 0.00 42.91 2.17
2929 7509 4.934356 ACACATGTCCATGGTTAGGAAAT 58.066 39.130 12.58 0.00 42.91 2.17
2930 7510 4.380843 ACACATGTCCATGGTTAGGAAA 57.619 40.909 12.58 0.00 42.91 3.13
2931 7511 4.078537 CAACACATGTCCATGGTTAGGAA 58.921 43.478 12.58 0.00 42.91 3.36
2932 7512 3.073798 ACAACACATGTCCATGGTTAGGA 59.926 43.478 12.58 0.00 42.91 2.94
2933 7513 3.420893 ACAACACATGTCCATGGTTAGG 58.579 45.455 12.58 6.38 42.91 2.69
2945 7525 5.094812 CCCGTTATCAAATGACAACACATG 58.905 41.667 5.52 0.00 31.31 3.21
2946 7526 5.007034 TCCCGTTATCAAATGACAACACAT 58.993 37.500 5.52 0.00 31.31 3.21
2947 7527 4.390264 TCCCGTTATCAAATGACAACACA 58.610 39.130 5.52 0.00 31.31 3.72
2948 7528 5.123186 TGATCCCGTTATCAAATGACAACAC 59.877 40.000 5.52 0.00 31.31 3.32
2949 7529 5.123186 GTGATCCCGTTATCAAATGACAACA 59.877 40.000 5.52 0.00 37.61 3.33
2950 7530 5.123186 TGTGATCCCGTTATCAAATGACAAC 59.877 40.000 0.00 0.00 37.61 3.32
2951 7531 5.249420 TGTGATCCCGTTATCAAATGACAA 58.751 37.500 0.00 0.00 37.61 3.18
2952 7532 4.837972 TGTGATCCCGTTATCAAATGACA 58.162 39.130 0.00 0.00 37.61 3.58
2953 7533 5.527214 TGATGTGATCCCGTTATCAAATGAC 59.473 40.000 4.98 0.00 34.56 3.06
2954 7534 5.679601 TGATGTGATCCCGTTATCAAATGA 58.320 37.500 4.98 0.00 34.56 2.57
2955 7535 6.564709 ATGATGTGATCCCGTTATCAAATG 57.435 37.500 4.98 0.00 34.56 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.