Multiple sequence alignment - TraesCS3D01G092600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G092600 chr3D 100.000 5459 0 0 1 5459 46579442 46584900 0.000000e+00 10081.0
1 TraesCS3D01G092600 chr3D 88.756 418 39 6 1458 1868 605470485 605470069 6.310000e-139 505.0
2 TraesCS3D01G092600 chr3D 94.737 57 2 1 5401 5456 595024976 595025032 2.710000e-13 87.9
3 TraesCS3D01G092600 chr3D 92.857 56 3 1 5401 5455 174076927 174076872 4.530000e-11 80.5
4 TraesCS3D01G092600 chr3B 94.323 5126 176 42 1 5073 72949309 72954372 0.000000e+00 7747.0
5 TraesCS3D01G092600 chr3B 79.238 525 83 17 2705 3226 814631040 814631541 5.240000e-90 342.0
6 TraesCS3D01G092600 chr3B 88.333 60 5 2 5401 5459 671843725 671843667 2.730000e-08 71.3
7 TraesCS3D01G092600 chr3A 94.649 4635 134 38 477 5086 57948246 57943701 0.000000e+00 7081.0
8 TraesCS3D01G092600 chr3A 100.000 28 0 0 27 54 57948271 57948244 1.000000e-02 52.8
9 TraesCS3D01G092600 chr1A 82.879 3300 496 56 1047 4321 117244619 117247874 0.000000e+00 2900.0
10 TraesCS3D01G092600 chr1A 86.517 267 28 2 2765 3026 535204684 535204947 2.490000e-73 287.0
11 TraesCS3D01G092600 chr1A 92.105 76 6 0 2668 2743 535204620 535204695 2.080000e-19 108.0
12 TraesCS3D01G092600 chr1D 82.962 2829 445 29 1045 3862 111089329 111092131 0.000000e+00 2519.0
13 TraesCS3D01G092600 chr1D 89.489 352 37 0 3970 4321 111092238 111092589 3.880000e-121 446.0
14 TraesCS3D01G092600 chr1D 81.992 472 55 12 2765 3226 438833794 438834245 1.860000e-99 374.0
15 TraesCS3D01G092600 chr1D 92.105 76 6 0 2668 2743 438833730 438833805 2.080000e-19 108.0
16 TraesCS3D01G092600 chr1D 92.982 57 3 1 5401 5456 430408953 430409009 1.260000e-11 82.4
17 TraesCS3D01G092600 chr1D 100.000 32 0 0 1490 1521 5518593 5518624 5.910000e-05 60.2
18 TraesCS3D01G092600 chr1B 82.762 2831 447 32 1045 3862 169693862 169696664 0.000000e+00 2486.0
19 TraesCS3D01G092600 chr1B 88.920 352 39 0 3970 4321 169696772 169697123 8.400000e-118 435.0
20 TraesCS3D01G092600 chr1B 92.105 76 6 0 2668 2743 594691626 594691701 2.080000e-19 108.0
21 TraesCS3D01G092600 chr1B 92.982 57 3 1 5401 5456 500268466 500268522 1.260000e-11 82.4
22 TraesCS3D01G092600 chr1B 93.617 47 2 1 5411 5456 141293950 141293996 9.810000e-08 69.4
23 TraesCS3D01G092600 chr6B 81.173 1296 217 20 2320 3609 11954594 11955868 0.000000e+00 1016.0
24 TraesCS3D01G092600 chr2A 89.552 268 26 2 1508 1774 20670386 20670652 6.770000e-89 339.0
25 TraesCS3D01G092600 chr2A 81.931 321 40 13 2801 3117 20671106 20671412 7.020000e-64 255.0
26 TraesCS3D01G092600 chr7A 71.534 1082 250 51 1079 2131 206910807 206911859 7.070000e-59 239.0
27 TraesCS3D01G092600 chr7A 76.341 317 59 12 3974 4282 206913635 206913943 7.320000e-34 156.0
28 TraesCS3D01G092600 chr7A 85.321 109 11 5 4007 4114 712180988 712181092 2.080000e-19 108.0
29 TraesCS3D01G092600 chr7B 70.648 1080 261 50 1080 2131 161776629 161777680 2.600000e-43 187.0
30 TraesCS3D01G092600 chr7B 76.656 317 58 13 3974 4282 161779460 161779768 1.570000e-35 161.0
31 TraesCS3D01G092600 chr7B 90.435 115 11 0 1431 1545 698889295 698889409 9.470000e-33 152.0
32 TraesCS3D01G092600 chr7B 78.539 219 20 13 296 497 697558403 697558195 9.610000e-23 119.0
33 TraesCS3D01G092600 chr7B 84.211 133 4 6 376 497 710325325 710325199 4.470000e-21 113.0
34 TraesCS3D01G092600 chr7B 83.962 106 4 4 399 497 713549361 713549460 7.530000e-14 89.8
35 TraesCS3D01G092600 chr7B 90.000 60 5 1 5401 5459 292668364 292668305 5.860000e-10 76.8
36 TraesCS3D01G092600 chr5B 84.293 191 30 0 1492 1682 644452058 644451868 2.600000e-43 187.0
37 TraesCS3D01G092600 chr5B 79.054 148 22 9 3969 4112 436259124 436259266 5.820000e-15 93.5
38 TraesCS3D01G092600 chr5B 90.000 60 5 1 5401 5459 601403121 601403062 5.860000e-10 76.8
39 TraesCS3D01G092600 chrUn 90.435 115 11 0 1431 1545 87691272 87691386 9.470000e-33 152.0
40 TraesCS3D01G092600 chr6D 82.895 152 26 0 2251 2402 16852427 16852578 2.650000e-28 137.0
41 TraesCS3D01G092600 chr6D 89.394 66 7 0 3141 3206 16853084 16853149 3.500000e-12 84.2
42 TraesCS3D01G092600 chr5D 87.500 72 6 3 5388 5456 234845440 234845511 4.530000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G092600 chr3D 46579442 46584900 5458 False 10081.0 10081 100.0000 1 5459 1 chr3D.!!$F1 5458
1 TraesCS3D01G092600 chr3B 72949309 72954372 5063 False 7747.0 7747 94.3230 1 5073 1 chr3B.!!$F1 5072
2 TraesCS3D01G092600 chr3B 814631040 814631541 501 False 342.0 342 79.2380 2705 3226 1 chr3B.!!$F2 521
3 TraesCS3D01G092600 chr3A 57943701 57948271 4570 True 3566.9 7081 97.3245 27 5086 2 chr3A.!!$R1 5059
4 TraesCS3D01G092600 chr1A 117244619 117247874 3255 False 2900.0 2900 82.8790 1047 4321 1 chr1A.!!$F1 3274
5 TraesCS3D01G092600 chr1D 111089329 111092589 3260 False 1482.5 2519 86.2255 1045 4321 2 chr1D.!!$F3 3276
6 TraesCS3D01G092600 chr1D 438833730 438834245 515 False 241.0 374 87.0485 2668 3226 2 chr1D.!!$F4 558
7 TraesCS3D01G092600 chr1B 169693862 169697123 3261 False 1460.5 2486 85.8410 1045 4321 2 chr1B.!!$F4 3276
8 TraesCS3D01G092600 chr6B 11954594 11955868 1274 False 1016.0 1016 81.1730 2320 3609 1 chr6B.!!$F1 1289
9 TraesCS3D01G092600 chr2A 20670386 20671412 1026 False 297.0 339 85.7415 1508 3117 2 chr2A.!!$F1 1609

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
231 233 0.252375 TAGTCGTTGGTAAGCCCCCT 60.252 55.000 0.00 0.00 0.00 4.79 F
459 472 0.546122 ACACACATGACACACACCCT 59.454 50.000 0.00 0.00 0.00 4.34 F
1464 1502 0.612744 GGAGCAAGCTGGAGAGTCTT 59.387 55.000 0.00 0.00 0.00 3.01 F
2448 2486 1.889105 CGCCATACCTGCGCAGATT 60.889 57.895 38.06 25.39 46.01 2.40 F
2481 2519 0.413832 ACCTCAGCTTCCTGGACCTA 59.586 55.000 0.00 0.00 39.61 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1464 1502 0.465460 GGTGGTTGGAGTTGACAGCA 60.465 55.000 0.00 0.00 0.00 4.41 R
1809 1847 1.676635 GATGTTCTGCAGGCTGGCA 60.677 57.895 17.64 13.44 42.53 4.92 R
2481 2519 1.541233 CCAGACAACCTGTTCGAGCTT 60.541 52.381 0.00 0.00 41.33 3.74 R
3904 4245 6.785488 TCACTAACTGACAGCAAAAGTATG 57.215 37.500 1.25 0.00 0.00 2.39 R
4460 4816 1.237285 CCTCTTGCTTGGTCCAACGG 61.237 60.000 0.00 0.00 0.00 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 102 6.073447 TGCAACCATCTATCTTTCCCTTAA 57.927 37.500 0.00 0.00 0.00 1.85
107 109 6.944862 CCATCTATCTTTCCCTTAATTCCCTG 59.055 42.308 0.00 0.00 0.00 4.45
108 110 7.202223 CCATCTATCTTTCCCTTAATTCCCTGA 60.202 40.741 0.00 0.00 0.00 3.86
109 111 7.380423 TCTATCTTTCCCTTAATTCCCTGAG 57.620 40.000 0.00 0.00 0.00 3.35
223 225 4.914312 CGAAAGCAATTAGTCGTTGGTA 57.086 40.909 0.00 0.00 36.38 3.25
225 227 5.313623 CGAAAGCAATTAGTCGTTGGTAAG 58.686 41.667 0.00 0.00 36.38 2.34
229 231 2.681344 CAATTAGTCGTTGGTAAGCCCC 59.319 50.000 0.00 0.00 0.00 5.80
231 233 0.252375 TAGTCGTTGGTAAGCCCCCT 60.252 55.000 0.00 0.00 0.00 4.79
261 269 5.470845 AATTTGAAACCAGATCGATCGAC 57.529 39.130 22.06 14.23 0.00 4.20
274 282 3.665675 ATCGACGAGGCCTGCAACC 62.666 63.158 12.00 0.00 0.00 3.77
278 286 3.710722 CGAGGCCTGCAACCCTCT 61.711 66.667 12.00 3.29 44.35 3.69
287 295 3.251004 GCCTGCAACCCTCTTAATTATCG 59.749 47.826 0.00 0.00 0.00 2.92
363 376 5.531287 CAGTGGATGGGGTAATAAACTAAGC 59.469 44.000 0.00 0.00 0.00 3.09
364 377 5.432060 AGTGGATGGGGTAATAAACTAAGCT 59.568 40.000 0.00 0.00 0.00 3.74
366 379 6.935208 GTGGATGGGGTAATAAACTAAGCTAG 59.065 42.308 0.00 0.00 0.00 3.42
447 460 2.676176 CGGAGATTCTGCAGACACACAT 60.676 50.000 18.03 6.75 0.00 3.21
448 461 2.676839 GGAGATTCTGCAGACACACATG 59.323 50.000 18.03 0.00 0.00 3.21
449 462 3.593096 GAGATTCTGCAGACACACATGA 58.407 45.455 18.03 0.00 0.00 3.07
450 463 3.332919 AGATTCTGCAGACACACATGAC 58.667 45.455 18.03 0.00 0.00 3.06
451 464 2.618442 TTCTGCAGACACACATGACA 57.382 45.000 18.03 0.00 0.00 3.58
452 465 1.869774 TCTGCAGACACACATGACAC 58.130 50.000 13.74 0.00 0.00 3.67
453 466 1.138661 TCTGCAGACACACATGACACA 59.861 47.619 13.74 0.00 0.00 3.72
454 467 1.262417 CTGCAGACACACATGACACAC 59.738 52.381 8.42 0.00 0.00 3.82
455 468 1.298602 GCAGACACACATGACACACA 58.701 50.000 0.00 0.00 0.00 3.72
456 469 1.003545 GCAGACACACATGACACACAC 60.004 52.381 0.00 0.00 0.00 3.82
457 470 1.599071 CAGACACACATGACACACACC 59.401 52.381 0.00 0.00 0.00 4.16
458 471 0.944386 GACACACATGACACACACCC 59.056 55.000 0.00 0.00 0.00 4.61
459 472 0.546122 ACACACATGACACACACCCT 59.454 50.000 0.00 0.00 0.00 4.34
460 473 1.229428 CACACATGACACACACCCTC 58.771 55.000 0.00 0.00 0.00 4.30
461 474 1.131638 ACACATGACACACACCCTCT 58.868 50.000 0.00 0.00 0.00 3.69
594 607 1.338020 CTAATCCGCCATTTCCTTGCC 59.662 52.381 0.00 0.00 0.00 4.52
655 669 3.866582 CCACCCCTGCCGATCTCC 61.867 72.222 0.00 0.00 0.00 3.71
719 738 2.923619 CCCCCTCTTTCTCCTCCTC 58.076 63.158 0.00 0.00 0.00 3.71
730 749 5.952947 TCTTTCTCCTCCTCTACTAAACCTG 59.047 44.000 0.00 0.00 0.00 4.00
744 763 1.204146 AACCTGGTGTGAGTGTGAGT 58.796 50.000 0.00 0.00 0.00 3.41
745 764 1.204146 ACCTGGTGTGAGTGTGAGTT 58.796 50.000 0.00 0.00 0.00 3.01
746 765 1.134401 ACCTGGTGTGAGTGTGAGTTG 60.134 52.381 0.00 0.00 0.00 3.16
747 766 1.134401 CCTGGTGTGAGTGTGAGTTGT 60.134 52.381 0.00 0.00 0.00 3.32
748 767 1.935873 CTGGTGTGAGTGTGAGTTGTG 59.064 52.381 0.00 0.00 0.00 3.33
749 768 1.552792 TGGTGTGAGTGTGAGTTGTGA 59.447 47.619 0.00 0.00 0.00 3.58
750 769 2.205074 GGTGTGAGTGTGAGTTGTGAG 58.795 52.381 0.00 0.00 0.00 3.51
751 770 2.418746 GGTGTGAGTGTGAGTTGTGAGT 60.419 50.000 0.00 0.00 0.00 3.41
752 771 2.604914 GTGTGAGTGTGAGTTGTGAGTG 59.395 50.000 0.00 0.00 0.00 3.51
753 772 2.495669 TGTGAGTGTGAGTTGTGAGTGA 59.504 45.455 0.00 0.00 0.00 3.41
754 773 3.119291 GTGAGTGTGAGTTGTGAGTGAG 58.881 50.000 0.00 0.00 0.00 3.51
755 774 2.131183 GAGTGTGAGTTGTGAGTGAGC 58.869 52.381 0.00 0.00 0.00 4.26
770 789 2.628657 AGTGAGCGAGTGAGTAAACCTT 59.371 45.455 0.00 0.00 0.00 3.50
775 794 1.798813 CGAGTGAGTAAACCTTGCCAC 59.201 52.381 0.00 0.00 0.00 5.01
792 811 1.620822 CACCAAGCCACCTAAAAGCT 58.379 50.000 0.00 0.00 38.88 3.74
793 812 2.554344 CCACCAAGCCACCTAAAAGCTA 60.554 50.000 0.00 0.00 35.30 3.32
794 813 2.488153 CACCAAGCCACCTAAAAGCTAC 59.512 50.000 0.00 0.00 35.30 3.58
795 814 1.737793 CCAAGCCACCTAAAAGCTACG 59.262 52.381 0.00 0.00 35.30 3.51
796 815 2.614481 CCAAGCCACCTAAAAGCTACGA 60.614 50.000 0.00 0.00 35.30 3.43
797 816 2.673368 CAAGCCACCTAAAAGCTACGAG 59.327 50.000 0.00 0.00 35.30 4.18
798 817 2.176889 AGCCACCTAAAAGCTACGAGA 58.823 47.619 0.00 0.00 34.38 4.04
799 818 2.094130 AGCCACCTAAAAGCTACGAGAC 60.094 50.000 0.00 0.00 34.38 3.36
800 819 2.353406 GCCACCTAAAAGCTACGAGACA 60.353 50.000 0.00 0.00 0.00 3.41
801 820 3.251571 CCACCTAAAAGCTACGAGACAC 58.748 50.000 0.00 0.00 0.00 3.67
805 824 3.368236 CCTAAAAGCTACGAGACACAAGC 59.632 47.826 0.00 0.00 35.16 4.01
859 894 3.391506 AGCAAGAACCAAGATTTTGCC 57.608 42.857 4.11 0.00 43.77 4.52
888 923 3.376859 TGTGTTGCTTCTGAATTTGACGT 59.623 39.130 0.00 0.00 0.00 4.34
955 990 2.016704 GTCGACAGTGCGGTGTCAG 61.017 63.158 11.55 10.02 46.19 3.51
980 1015 3.118592 AGTCCATTGTAGCTAGCTTGACC 60.119 47.826 24.88 9.33 0.00 4.02
981 1016 2.170607 TCCATTGTAGCTAGCTTGACCC 59.829 50.000 24.88 6.81 0.00 4.46
995 1030 3.105852 GACCCCTCGCTCGTCGTAC 62.106 68.421 0.00 0.00 39.67 3.67
1422 1460 2.107141 GCGCTCACGGGCTCTATT 59.893 61.111 0.00 0.00 44.85 1.73
1434 1472 1.329256 GCTCTATTCCGGTGAGCCTA 58.671 55.000 21.53 0.00 45.12 3.93
1461 1499 1.537397 TGGGAGCAAGCTGGAGAGT 60.537 57.895 0.00 0.00 0.00 3.24
1464 1502 0.612744 GGAGCAAGCTGGAGAGTCTT 59.387 55.000 0.00 0.00 0.00 3.01
1710 1748 2.818132 GAGACCAGCATCTCGGGG 59.182 66.667 0.00 0.00 36.05 5.73
1851 1889 2.202260 TACGAGAACGCGCTGTCG 60.202 61.111 24.80 24.80 43.96 4.35
2448 2486 1.889105 CGCCATACCTGCGCAGATT 60.889 57.895 38.06 25.39 46.01 2.40
2481 2519 0.413832 ACCTCAGCTTCCTGGACCTA 59.586 55.000 0.00 0.00 39.61 3.08
2637 2675 1.163554 ACCTCGACCTCTCGTACAAC 58.836 55.000 0.00 0.00 41.02 3.32
2638 2676 1.271271 ACCTCGACCTCTCGTACAACT 60.271 52.381 0.00 0.00 41.02 3.16
2643 2681 2.163815 CGACCTCTCGTACAACTCCATT 59.836 50.000 0.00 0.00 35.00 3.16
2889 3167 1.377725 CATGCCCAAGGAGTTCGCT 60.378 57.895 0.00 0.00 0.00 4.93
3904 4245 3.598019 TTCCATCTTGTACCACCGTAC 57.402 47.619 0.00 0.00 44.44 3.67
4606 4963 2.760385 GCCGACCCAGGAGCTAGT 60.760 66.667 0.00 0.00 0.00 2.57
4607 4964 1.455217 GCCGACCCAGGAGCTAGTA 60.455 63.158 0.00 0.00 0.00 1.82
4608 4965 1.457009 GCCGACCCAGGAGCTAGTAG 61.457 65.000 0.00 0.00 0.00 2.57
4612 4970 1.839296 CCCAGGAGCTAGTAGCCCC 60.839 68.421 18.65 16.65 43.77 5.80
4614 4972 2.522193 AGGAGCTAGTAGCCCCGC 60.522 66.667 18.65 6.01 44.73 6.13
4670 5028 1.283793 CGGTGGAGCAAACAAGCTG 59.716 57.895 0.00 0.00 46.75 4.24
4722 5081 4.376615 GCAACACAAGCAACAGCAATAATG 60.377 41.667 0.00 0.00 0.00 1.90
4723 5082 4.852134 ACACAAGCAACAGCAATAATGA 57.148 36.364 0.00 0.00 0.00 2.57
4724 5083 5.395682 ACACAAGCAACAGCAATAATGAT 57.604 34.783 0.00 0.00 0.00 2.45
4807 5166 9.772973 GTGTATGTACATTAATCCTGTCCAATA 57.227 33.333 14.77 0.00 38.63 1.90
4811 5170 9.730705 ATGTACATTAATCCTGTCCAATATCTG 57.269 33.333 1.41 0.00 0.00 2.90
4823 5183 5.426509 TGTCCAATATCTGTGATCTCTTGGT 59.573 40.000 10.68 0.00 34.62 3.67
4939 5318 3.218453 TCATGTGACCGGTGATTTGTTT 58.782 40.909 14.63 0.00 0.00 2.83
4961 5340 3.435186 GCCGCTTTGGGTGAGCTC 61.435 66.667 6.82 6.82 37.99 4.09
4962 5341 3.121030 CCGCTTTGGGTGAGCTCG 61.121 66.667 9.64 0.00 37.99 5.03
4963 5342 2.357517 CGCTTTGGGTGAGCTCGT 60.358 61.111 9.64 0.00 37.99 4.18
4964 5343 2.671177 CGCTTTGGGTGAGCTCGTG 61.671 63.158 9.64 0.00 37.99 4.35
4965 5344 2.328099 GCTTTGGGTGAGCTCGTGG 61.328 63.158 9.64 0.00 37.18 4.94
5076 5456 1.766143 CGGCGGATACTGCTTTCTGC 61.766 60.000 0.00 0.00 42.35 4.26
5089 5469 3.003480 GCTTTCTGCAGGTTACTAGTGG 58.997 50.000 15.13 0.00 42.31 4.00
5090 5470 2.762535 TTCTGCAGGTTACTAGTGGC 57.237 50.000 15.13 2.22 0.00 5.01
5091 5471 0.530744 TCTGCAGGTTACTAGTGGCG 59.469 55.000 15.13 0.00 0.00 5.69
5092 5472 0.530744 CTGCAGGTTACTAGTGGCGA 59.469 55.000 5.57 0.00 0.00 5.54
5093 5473 0.530744 TGCAGGTTACTAGTGGCGAG 59.469 55.000 5.39 0.00 0.00 5.03
5094 5474 0.806492 GCAGGTTACTAGTGGCGAGC 60.806 60.000 5.39 0.58 0.00 5.03
5095 5475 0.525668 CAGGTTACTAGTGGCGAGCG 60.526 60.000 5.39 0.00 0.00 5.03
5096 5476 0.964358 AGGTTACTAGTGGCGAGCGT 60.964 55.000 5.39 0.00 0.00 5.07
5097 5477 0.801067 GGTTACTAGTGGCGAGCGTG 60.801 60.000 5.39 0.00 0.00 5.34
5098 5478 0.169672 GTTACTAGTGGCGAGCGTGA 59.830 55.000 5.39 0.00 0.00 4.35
5099 5479 0.883153 TTACTAGTGGCGAGCGTGAA 59.117 50.000 5.39 0.00 0.00 3.18
5100 5480 0.883153 TACTAGTGGCGAGCGTGAAA 59.117 50.000 5.39 0.00 0.00 2.69
5101 5481 0.246635 ACTAGTGGCGAGCGTGAAAT 59.753 50.000 0.00 0.00 0.00 2.17
5102 5482 1.337823 ACTAGTGGCGAGCGTGAAATT 60.338 47.619 0.00 0.00 0.00 1.82
5103 5483 1.061131 CTAGTGGCGAGCGTGAAATTG 59.939 52.381 0.00 0.00 0.00 2.32
5104 5484 1.154225 GTGGCGAGCGTGAAATTGG 60.154 57.895 0.00 0.00 0.00 3.16
5105 5485 1.302112 TGGCGAGCGTGAAATTGGA 60.302 52.632 0.00 0.00 0.00 3.53
5106 5486 0.886938 TGGCGAGCGTGAAATTGGAA 60.887 50.000 0.00 0.00 0.00 3.53
5107 5487 0.239879 GGCGAGCGTGAAATTGGAAA 59.760 50.000 0.00 0.00 0.00 3.13
5108 5488 1.135402 GGCGAGCGTGAAATTGGAAAT 60.135 47.619 0.00 0.00 0.00 2.17
5109 5489 2.595386 GCGAGCGTGAAATTGGAAATT 58.405 42.857 0.00 0.00 0.00 1.82
5110 5490 2.986479 GCGAGCGTGAAATTGGAAATTT 59.014 40.909 0.00 0.00 0.00 1.82
5111 5491 4.162812 GCGAGCGTGAAATTGGAAATTTA 58.837 39.130 0.00 0.00 0.00 1.40
5112 5492 4.030195 GCGAGCGTGAAATTGGAAATTTAC 59.970 41.667 0.00 0.00 0.00 2.01
5113 5493 5.390613 CGAGCGTGAAATTGGAAATTTACT 58.609 37.500 1.27 0.00 0.00 2.24
5114 5494 5.508224 CGAGCGTGAAATTGGAAATTTACTC 59.492 40.000 1.27 0.00 0.00 2.59
5115 5495 5.709966 AGCGTGAAATTGGAAATTTACTCC 58.290 37.500 1.27 0.00 0.00 3.85
5116 5496 5.476945 AGCGTGAAATTGGAAATTTACTCCT 59.523 36.000 1.27 0.00 33.77 3.69
5117 5497 6.015434 AGCGTGAAATTGGAAATTTACTCCTT 60.015 34.615 1.27 0.00 33.77 3.36
5118 5498 6.645003 GCGTGAAATTGGAAATTTACTCCTTT 59.355 34.615 1.27 0.00 33.77 3.11
5119 5499 7.810759 GCGTGAAATTGGAAATTTACTCCTTTA 59.189 33.333 1.27 0.00 33.77 1.85
5120 5500 9.341899 CGTGAAATTGGAAATTTACTCCTTTAG 57.658 33.333 1.27 0.00 33.77 1.85
5121 5501 9.639601 GTGAAATTGGAAATTTACTCCTTTAGG 57.360 33.333 1.27 0.00 33.77 2.69
5122 5502 8.311109 TGAAATTGGAAATTTACTCCTTTAGGC 58.689 33.333 1.27 0.00 33.77 3.93
5123 5503 6.791867 ATTGGAAATTTACTCCTTTAGGCC 57.208 37.500 1.27 0.00 33.77 5.19
5124 5504 5.263872 TGGAAATTTACTCCTTTAGGCCA 57.736 39.130 5.01 0.00 33.77 5.36
5125 5505 5.261216 TGGAAATTTACTCCTTTAGGCCAG 58.739 41.667 5.01 0.00 33.77 4.85
5126 5506 4.645136 GGAAATTTACTCCTTTAGGCCAGG 59.355 45.833 5.01 2.65 34.44 4.45
5127 5507 2.801077 TTTACTCCTTTAGGCCAGGC 57.199 50.000 5.01 1.26 34.44 4.85
5160 5540 3.454573 CACGCTGGGCCATGCAAT 61.455 61.111 22.09 10.78 0.00 3.56
5161 5541 3.454573 ACGCTGGGCCATGCAATG 61.455 61.111 22.09 11.98 46.21 2.82
5162 5542 3.454573 CGCTGGGCCATGCAATGT 61.455 61.111 22.09 0.00 44.81 2.71
5163 5543 2.983791 GCTGGGCCATGCAATGTT 59.016 55.556 18.99 0.00 44.81 2.71
5164 5544 1.153509 GCTGGGCCATGCAATGTTC 60.154 57.895 18.99 0.00 44.81 3.18
5165 5545 1.890625 GCTGGGCCATGCAATGTTCA 61.891 55.000 18.99 0.00 44.81 3.18
5166 5546 0.174845 CTGGGCCATGCAATGTTCAG 59.825 55.000 6.72 0.00 44.81 3.02
5167 5547 0.251698 TGGGCCATGCAATGTTCAGA 60.252 50.000 0.00 0.00 44.81 3.27
5168 5548 0.458669 GGGCCATGCAATGTTCAGAG 59.541 55.000 4.39 0.00 44.81 3.35
5169 5549 0.179119 GGCCATGCAATGTTCAGAGC 60.179 55.000 0.00 0.00 44.81 4.09
5170 5550 0.815734 GCCATGCAATGTTCAGAGCT 59.184 50.000 0.00 0.00 44.81 4.09
5171 5551 1.469251 GCCATGCAATGTTCAGAGCTG 60.469 52.381 0.00 0.00 44.81 4.24
5172 5552 1.816835 CCATGCAATGTTCAGAGCTGT 59.183 47.619 0.00 0.00 44.81 4.40
5173 5553 2.415491 CCATGCAATGTTCAGAGCTGTG 60.415 50.000 4.05 4.05 44.81 3.66
5174 5554 1.971481 TGCAATGTTCAGAGCTGTGT 58.029 45.000 11.09 0.00 0.00 3.72
5175 5555 1.605232 TGCAATGTTCAGAGCTGTGTG 59.395 47.619 11.09 2.40 0.00 3.82
5176 5556 1.068748 GCAATGTTCAGAGCTGTGTGG 60.069 52.381 11.09 0.00 0.00 4.17
5177 5557 1.538512 CAATGTTCAGAGCTGTGTGGG 59.461 52.381 11.09 0.00 0.00 4.61
5178 5558 0.767375 ATGTTCAGAGCTGTGTGGGT 59.233 50.000 11.09 0.00 0.00 4.51
5179 5559 0.179048 TGTTCAGAGCTGTGTGGGTG 60.179 55.000 11.09 0.00 0.00 4.61
5180 5560 0.886490 GTTCAGAGCTGTGTGGGTGG 60.886 60.000 11.09 0.00 0.00 4.61
5181 5561 2.033141 CAGAGCTGTGTGGGTGGG 59.967 66.667 1.91 0.00 0.00 4.61
5182 5562 3.252284 AGAGCTGTGTGGGTGGGG 61.252 66.667 0.00 0.00 0.00 4.96
5186 5566 4.704833 CTGTGTGGGTGGGGCTCG 62.705 72.222 0.00 0.00 0.00 5.03
5188 5568 4.699522 GTGTGGGTGGGGCTCGTC 62.700 72.222 0.00 0.00 0.00 4.20
5192 5572 4.754667 GGGTGGGGCTCGTCGAAC 62.755 72.222 0.00 0.00 0.00 3.95
5193 5573 3.998672 GGTGGGGCTCGTCGAACA 61.999 66.667 0.00 0.00 0.00 3.18
5194 5574 2.264794 GTGGGGCTCGTCGAACAT 59.735 61.111 0.00 0.00 0.00 2.71
5195 5575 1.375523 GTGGGGCTCGTCGAACATT 60.376 57.895 0.00 0.00 0.00 2.71
5196 5576 0.953960 GTGGGGCTCGTCGAACATTT 60.954 55.000 0.00 0.00 0.00 2.32
5197 5577 0.953471 TGGGGCTCGTCGAACATTTG 60.953 55.000 0.00 0.00 0.00 2.32
5198 5578 0.953960 GGGGCTCGTCGAACATTTGT 60.954 55.000 0.00 0.00 0.00 2.83
5199 5579 0.442699 GGGCTCGTCGAACATTTGTC 59.557 55.000 0.00 0.00 0.00 3.18
5200 5580 1.429463 GGCTCGTCGAACATTTGTCT 58.571 50.000 0.00 0.00 0.00 3.41
5201 5581 1.126846 GGCTCGTCGAACATTTGTCTG 59.873 52.381 0.00 0.00 0.00 3.51
5202 5582 1.462541 GCTCGTCGAACATTTGTCTGC 60.463 52.381 0.00 0.00 0.00 4.26
5203 5583 1.126846 CTCGTCGAACATTTGTCTGCC 59.873 52.381 0.00 0.00 0.00 4.85
5204 5584 1.148310 CGTCGAACATTTGTCTGCCT 58.852 50.000 0.00 0.00 0.00 4.75
5205 5585 2.029739 TCGTCGAACATTTGTCTGCCTA 60.030 45.455 0.00 0.00 0.00 3.93
5206 5586 2.092211 CGTCGAACATTTGTCTGCCTAC 59.908 50.000 0.00 0.00 0.00 3.18
5207 5587 3.326747 GTCGAACATTTGTCTGCCTACT 58.673 45.455 0.00 0.00 0.00 2.57
5208 5588 3.746492 GTCGAACATTTGTCTGCCTACTT 59.254 43.478 0.00 0.00 0.00 2.24
5209 5589 4.927425 GTCGAACATTTGTCTGCCTACTTA 59.073 41.667 0.00 0.00 0.00 2.24
5210 5590 4.927425 TCGAACATTTGTCTGCCTACTTAC 59.073 41.667 0.00 0.00 0.00 2.34
5211 5591 4.688879 CGAACATTTGTCTGCCTACTTACA 59.311 41.667 0.00 0.00 0.00 2.41
5212 5592 5.163953 CGAACATTTGTCTGCCTACTTACAG 60.164 44.000 0.00 0.00 35.15 2.74
5213 5593 4.003648 ACATTTGTCTGCCTACTTACAGC 58.996 43.478 0.00 0.00 33.80 4.40
5214 5594 4.256920 CATTTGTCTGCCTACTTACAGCT 58.743 43.478 0.00 0.00 33.80 4.24
5215 5595 4.351874 TTTGTCTGCCTACTTACAGCTT 57.648 40.909 0.00 0.00 33.80 3.74
5216 5596 3.594603 TGTCTGCCTACTTACAGCTTC 57.405 47.619 0.00 0.00 33.80 3.86
5217 5597 2.897326 TGTCTGCCTACTTACAGCTTCA 59.103 45.455 0.00 0.00 33.80 3.02
5218 5598 3.515502 TGTCTGCCTACTTACAGCTTCAT 59.484 43.478 0.00 0.00 33.80 2.57
5219 5599 3.868077 GTCTGCCTACTTACAGCTTCATG 59.132 47.826 0.00 0.00 33.80 3.07
5220 5600 3.769300 TCTGCCTACTTACAGCTTCATGA 59.231 43.478 0.00 0.00 33.80 3.07
5221 5601 4.118410 CTGCCTACTTACAGCTTCATGAG 58.882 47.826 0.00 0.00 0.00 2.90
5222 5602 3.515502 TGCCTACTTACAGCTTCATGAGT 59.484 43.478 0.00 0.00 0.00 3.41
5223 5603 4.020218 TGCCTACTTACAGCTTCATGAGTT 60.020 41.667 0.00 0.00 0.00 3.01
5224 5604 4.938226 GCCTACTTACAGCTTCATGAGTTT 59.062 41.667 0.00 0.00 0.00 2.66
5225 5605 5.064071 GCCTACTTACAGCTTCATGAGTTTC 59.936 44.000 0.00 0.00 0.00 2.78
5226 5606 6.402222 CCTACTTACAGCTTCATGAGTTTCT 58.598 40.000 0.00 0.00 0.00 2.52
5227 5607 6.533367 CCTACTTACAGCTTCATGAGTTTCTC 59.467 42.308 0.00 0.00 0.00 2.87
5228 5608 5.858381 ACTTACAGCTTCATGAGTTTCTCA 58.142 37.500 0.00 1.92 44.99 3.27
5229 5609 6.291377 ACTTACAGCTTCATGAGTTTCTCAA 58.709 36.000 3.58 0.00 44.04 3.02
5230 5610 6.767902 ACTTACAGCTTCATGAGTTTCTCAAA 59.232 34.615 3.58 0.00 44.04 2.69
5231 5611 7.283127 ACTTACAGCTTCATGAGTTTCTCAAAA 59.717 33.333 3.58 1.81 44.04 2.44
5232 5612 6.455360 ACAGCTTCATGAGTTTCTCAAAAA 57.545 33.333 3.58 1.50 44.04 1.94
5268 5648 7.692460 AAAATCACTACAGCTTCATGAATGA 57.308 32.000 14.50 11.10 34.44 2.57
5269 5649 6.922247 AATCACTACAGCTTCATGAATGAG 57.078 37.500 14.50 10.05 38.19 2.90
5270 5650 5.411831 TCACTACAGCTTCATGAATGAGT 57.588 39.130 14.50 12.27 38.19 3.41
5271 5651 6.530019 TCACTACAGCTTCATGAATGAGTA 57.470 37.500 14.50 12.67 38.19 2.59
5272 5652 6.935167 TCACTACAGCTTCATGAATGAGTAA 58.065 36.000 14.50 0.17 38.19 2.24
5273 5653 7.386059 TCACTACAGCTTCATGAATGAGTAAA 58.614 34.615 14.50 4.85 38.19 2.01
5274 5654 7.547019 TCACTACAGCTTCATGAATGAGTAAAG 59.453 37.037 14.50 8.52 38.19 1.85
5275 5655 5.557891 ACAGCTTCATGAATGAGTAAAGC 57.442 39.130 14.50 9.39 37.26 3.51
5276 5656 5.005740 ACAGCTTCATGAATGAGTAAAGCA 58.994 37.500 14.50 0.00 38.66 3.91
5277 5657 5.106396 ACAGCTTCATGAATGAGTAAAGCAC 60.106 40.000 14.50 0.00 38.66 4.40
5278 5658 4.397417 AGCTTCATGAATGAGTAAAGCACC 59.603 41.667 8.96 0.00 38.66 5.01
5279 5659 4.397417 GCTTCATGAATGAGTAAAGCACCT 59.603 41.667 8.96 0.00 37.07 4.00
5280 5660 5.586243 GCTTCATGAATGAGTAAAGCACCTA 59.414 40.000 8.96 0.00 37.07 3.08
5281 5661 6.261826 GCTTCATGAATGAGTAAAGCACCTAT 59.738 38.462 8.96 0.00 37.07 2.57
5282 5662 7.442364 GCTTCATGAATGAGTAAAGCACCTATA 59.558 37.037 8.96 0.00 37.07 1.31
5283 5663 8.893219 TTCATGAATGAGTAAAGCACCTATAG 57.107 34.615 3.38 0.00 38.19 1.31
5284 5664 6.931281 TCATGAATGAGTAAAGCACCTATAGC 59.069 38.462 0.00 0.00 32.11 2.97
5285 5665 6.485830 TGAATGAGTAAAGCACCTATAGCT 57.514 37.500 0.00 0.00 45.97 3.32
5286 5666 6.516718 TGAATGAGTAAAGCACCTATAGCTC 58.483 40.000 0.00 0.00 42.53 4.09
5287 5667 6.098266 TGAATGAGTAAAGCACCTATAGCTCA 59.902 38.462 0.00 0.00 42.53 4.26
5288 5668 5.521906 TGAGTAAAGCACCTATAGCTCAG 57.478 43.478 0.00 0.00 42.53 3.35
5289 5669 4.342378 TGAGTAAAGCACCTATAGCTCAGG 59.658 45.833 11.83 11.83 42.53 3.86
5294 5674 3.957188 ACCTATAGCTCAGGTGCCT 57.043 52.632 17.08 0.00 44.89 4.75
5295 5675 1.418334 ACCTATAGCTCAGGTGCCTG 58.582 55.000 17.08 11.82 44.89 4.85
5307 5687 5.200368 TCAGGTGCCTGATTTTTCTTTTC 57.800 39.130 16.28 0.00 46.80 2.29
5308 5688 4.648762 TCAGGTGCCTGATTTTTCTTTTCA 59.351 37.500 16.28 0.00 46.80 2.69
5309 5689 5.305128 TCAGGTGCCTGATTTTTCTTTTCAT 59.695 36.000 16.28 0.00 46.80 2.57
5310 5690 5.407387 CAGGTGCCTGATTTTTCTTTTCATG 59.593 40.000 12.66 0.00 46.30 3.07
5311 5691 5.070847 AGGTGCCTGATTTTTCTTTTCATGT 59.929 36.000 0.00 0.00 0.00 3.21
5312 5692 5.759763 GGTGCCTGATTTTTCTTTTCATGTT 59.240 36.000 0.00 0.00 0.00 2.71
5313 5693 6.260714 GGTGCCTGATTTTTCTTTTCATGTTT 59.739 34.615 0.00 0.00 0.00 2.83
5314 5694 7.347448 GTGCCTGATTTTTCTTTTCATGTTTC 58.653 34.615 0.00 0.00 0.00 2.78
5315 5695 7.011295 GTGCCTGATTTTTCTTTTCATGTTTCA 59.989 33.333 0.00 0.00 0.00 2.69
5316 5696 7.225145 TGCCTGATTTTTCTTTTCATGTTTCAG 59.775 33.333 0.00 0.00 0.00 3.02
5317 5697 7.225341 GCCTGATTTTTCTTTTCATGTTTCAGT 59.775 33.333 0.00 0.00 0.00 3.41
5318 5698 8.758715 CCTGATTTTTCTTTTCATGTTTCAGTC 58.241 33.333 0.00 0.00 0.00 3.51
5319 5699 9.304731 CTGATTTTTCTTTTCATGTTTCAGTCA 57.695 29.630 0.00 0.00 0.00 3.41
5320 5700 9.086336 TGATTTTTCTTTTCATGTTTCAGTCAC 57.914 29.630 0.00 0.00 0.00 3.67
5321 5701 9.305925 GATTTTTCTTTTCATGTTTCAGTCACT 57.694 29.630 0.00 0.00 0.00 3.41
5322 5702 9.657419 ATTTTTCTTTTCATGTTTCAGTCACTT 57.343 25.926 0.00 0.00 0.00 3.16
5323 5703 8.687824 TTTTCTTTTCATGTTTCAGTCACTTC 57.312 30.769 0.00 0.00 0.00 3.01
5324 5704 7.630242 TTCTTTTCATGTTTCAGTCACTTCT 57.370 32.000 0.00 0.00 0.00 2.85
5325 5705 7.630242 TCTTTTCATGTTTCAGTCACTTCTT 57.370 32.000 0.00 0.00 0.00 2.52
5326 5706 8.055279 TCTTTTCATGTTTCAGTCACTTCTTT 57.945 30.769 0.00 0.00 0.00 2.52
5327 5707 8.522830 TCTTTTCATGTTTCAGTCACTTCTTTT 58.477 29.630 0.00 0.00 0.00 2.27
5328 5708 9.143631 CTTTTCATGTTTCAGTCACTTCTTTTT 57.856 29.630 0.00 0.00 0.00 1.94
5329 5709 8.687824 TTTCATGTTTCAGTCACTTCTTTTTC 57.312 30.769 0.00 0.00 0.00 2.29
5330 5710 7.630242 TCATGTTTCAGTCACTTCTTTTTCT 57.370 32.000 0.00 0.00 0.00 2.52
5331 5711 8.731275 TCATGTTTCAGTCACTTCTTTTTCTA 57.269 30.769 0.00 0.00 0.00 2.10
5332 5712 9.342308 TCATGTTTCAGTCACTTCTTTTTCTAT 57.658 29.630 0.00 0.00 0.00 1.98
5333 5713 9.604626 CATGTTTCAGTCACTTCTTTTTCTATC 57.395 33.333 0.00 0.00 0.00 2.08
5334 5714 8.154649 TGTTTCAGTCACTTCTTTTTCTATCC 57.845 34.615 0.00 0.00 0.00 2.59
5335 5715 7.773224 TGTTTCAGTCACTTCTTTTTCTATCCA 59.227 33.333 0.00 0.00 0.00 3.41
5336 5716 8.787852 GTTTCAGTCACTTCTTTTTCTATCCAT 58.212 33.333 0.00 0.00 0.00 3.41
5337 5717 7.912056 TCAGTCACTTCTTTTTCTATCCATG 57.088 36.000 0.00 0.00 0.00 3.66
5338 5718 7.679783 TCAGTCACTTCTTTTTCTATCCATGA 58.320 34.615 0.00 0.00 0.00 3.07
5339 5719 7.821359 TCAGTCACTTCTTTTTCTATCCATGAG 59.179 37.037 0.00 0.00 0.00 2.90
5340 5720 7.821359 CAGTCACTTCTTTTTCTATCCATGAGA 59.179 37.037 0.00 0.00 0.00 3.27
5341 5721 8.547173 AGTCACTTCTTTTTCTATCCATGAGAT 58.453 33.333 0.00 0.00 39.15 2.75
5342 5722 8.610896 GTCACTTCTTTTTCTATCCATGAGATG 58.389 37.037 0.00 0.00 36.33 2.90
5343 5723 8.324306 TCACTTCTTTTTCTATCCATGAGATGT 58.676 33.333 0.00 0.00 36.33 3.06
5344 5724 8.610896 CACTTCTTTTTCTATCCATGAGATGTC 58.389 37.037 0.00 0.00 36.33 3.06
5345 5725 8.324306 ACTTCTTTTTCTATCCATGAGATGTCA 58.676 33.333 0.00 0.00 36.33 3.58
5346 5726 9.170734 CTTCTTTTTCTATCCATGAGATGTCAA 57.829 33.333 0.00 0.00 35.88 3.18
5347 5727 9.690913 TTCTTTTTCTATCCATGAGATGTCAAT 57.309 29.630 0.00 0.00 35.88 2.57
5348 5728 9.334947 TCTTTTTCTATCCATGAGATGTCAATC 57.665 33.333 0.00 0.00 35.88 2.67
5349 5729 9.339850 CTTTTTCTATCCATGAGATGTCAATCT 57.660 33.333 0.00 0.00 46.23 2.40
5355 5735 9.531942 CTATCCATGAGATGTCAATCTAATAGC 57.468 37.037 0.00 0.00 43.48 2.97
5356 5736 7.550597 TCCATGAGATGTCAATCTAATAGCT 57.449 36.000 0.00 0.00 43.48 3.32
5357 5737 7.971201 TCCATGAGATGTCAATCTAATAGCTT 58.029 34.615 0.00 0.00 43.48 3.74
5358 5738 9.093458 TCCATGAGATGTCAATCTAATAGCTTA 57.907 33.333 0.00 0.00 43.48 3.09
5359 5739 9.149225 CCATGAGATGTCAATCTAATAGCTTAC 57.851 37.037 0.00 0.00 43.48 2.34
5360 5740 9.926158 CATGAGATGTCAATCTAATAGCTTACT 57.074 33.333 0.00 0.00 43.48 2.24
5362 5742 9.973450 TGAGATGTCAATCTAATAGCTTACTTC 57.027 33.333 0.00 0.00 43.48 3.01
5375 5755 8.809468 AATAGCTTACTTCTTTTTCTTAGGGG 57.191 34.615 0.00 0.00 0.00 4.79
5376 5756 6.202202 AGCTTACTTCTTTTTCTTAGGGGT 57.798 37.500 0.00 0.00 0.00 4.95
5377 5757 7.325725 AGCTTACTTCTTTTTCTTAGGGGTA 57.674 36.000 0.00 0.00 0.00 3.69
5378 5758 7.166851 AGCTTACTTCTTTTTCTTAGGGGTAC 58.833 38.462 0.00 0.00 0.00 3.34
5379 5759 6.938596 GCTTACTTCTTTTTCTTAGGGGTACA 59.061 38.462 0.00 0.00 0.00 2.90
5380 5760 7.446319 GCTTACTTCTTTTTCTTAGGGGTACAA 59.554 37.037 0.00 0.00 0.00 2.41
5381 5761 8.681486 TTACTTCTTTTTCTTAGGGGTACAAC 57.319 34.615 0.00 0.00 0.00 3.32
5382 5762 6.907961 ACTTCTTTTTCTTAGGGGTACAACT 58.092 36.000 0.00 0.00 0.00 3.16
5383 5763 8.037723 ACTTCTTTTTCTTAGGGGTACAACTA 57.962 34.615 0.00 0.00 0.00 2.24
5384 5764 8.496916 ACTTCTTTTTCTTAGGGGTACAACTAA 58.503 33.333 0.00 1.91 0.00 2.24
5385 5765 8.913487 TTCTTTTTCTTAGGGGTACAACTAAG 57.087 34.615 21.02 21.02 43.78 2.18
5386 5766 8.037723 TCTTTTTCTTAGGGGTACAACTAAGT 57.962 34.615 23.74 0.00 43.29 2.24
5387 5767 8.496916 TCTTTTTCTTAGGGGTACAACTAAGTT 58.503 33.333 23.74 0.00 43.29 2.66
5388 5768 9.128404 CTTTTTCTTAGGGGTACAACTAAGTTT 57.872 33.333 23.74 0.00 43.29 2.66
5389 5769 9.478238 TTTTTCTTAGGGGTACAACTAAGTTTT 57.522 29.630 23.74 0.00 43.29 2.43
5390 5770 8.454570 TTTCTTAGGGGTACAACTAAGTTTTG 57.545 34.615 23.74 9.20 43.29 2.44
5391 5771 7.377696 TCTTAGGGGTACAACTAAGTTTTGA 57.622 36.000 23.74 10.72 43.29 2.69
5392 5772 7.981142 TCTTAGGGGTACAACTAAGTTTTGAT 58.019 34.615 23.74 0.00 43.29 2.57
5393 5773 8.442374 TCTTAGGGGTACAACTAAGTTTTGATT 58.558 33.333 23.74 0.00 43.29 2.57
5394 5774 6.894339 AGGGGTACAACTAAGTTTTGATTG 57.106 37.500 0.00 0.00 0.00 2.67
5395 5775 6.607019 AGGGGTACAACTAAGTTTTGATTGA 58.393 36.000 0.00 0.00 0.00 2.57
5396 5776 7.064229 AGGGGTACAACTAAGTTTTGATTGAA 58.936 34.615 0.00 0.00 0.00 2.69
5397 5777 7.562088 AGGGGTACAACTAAGTTTTGATTGAAA 59.438 33.333 0.00 0.00 0.00 2.69
5398 5778 7.865889 GGGGTACAACTAAGTTTTGATTGAAAG 59.134 37.037 0.00 0.00 0.00 2.62
5399 5779 7.381408 GGGTACAACTAAGTTTTGATTGAAAGC 59.619 37.037 0.00 0.00 0.00 3.51
5400 5780 8.135529 GGTACAACTAAGTTTTGATTGAAAGCT 58.864 33.333 0.00 0.00 36.72 3.74
5403 5783 8.903820 ACAACTAAGTTTTGATTGAAAGCTACT 58.096 29.630 0.00 0.00 34.26 2.57
5404 5784 9.387123 CAACTAAGTTTTGATTGAAAGCTACTC 57.613 33.333 0.00 0.00 34.26 2.59
5405 5785 8.100508 ACTAAGTTTTGATTGAAAGCTACTCC 57.899 34.615 0.00 0.00 34.26 3.85
5406 5786 5.966742 AGTTTTGATTGAAAGCTACTCCC 57.033 39.130 0.00 0.00 33.65 4.30
5407 5787 5.635120 AGTTTTGATTGAAAGCTACTCCCT 58.365 37.500 0.00 0.00 33.65 4.20
5408 5788 5.707764 AGTTTTGATTGAAAGCTACTCCCTC 59.292 40.000 0.00 0.00 33.65 4.30
5409 5789 5.505181 TTTGATTGAAAGCTACTCCCTCT 57.495 39.130 0.00 0.00 0.00 3.69
5410 5790 4.478206 TGATTGAAAGCTACTCCCTCTG 57.522 45.455 0.00 0.00 0.00 3.35
5411 5791 3.840666 TGATTGAAAGCTACTCCCTCTGT 59.159 43.478 0.00 0.00 0.00 3.41
5412 5792 4.287067 TGATTGAAAGCTACTCCCTCTGTT 59.713 41.667 0.00 0.00 0.00 3.16
5413 5793 3.963428 TGAAAGCTACTCCCTCTGTTC 57.037 47.619 0.00 0.00 0.00 3.18
5414 5794 2.567615 TGAAAGCTACTCCCTCTGTTCC 59.432 50.000 0.00 0.00 0.00 3.62
5415 5795 2.632763 AAGCTACTCCCTCTGTTCCT 57.367 50.000 0.00 0.00 0.00 3.36
5416 5796 3.759815 AAGCTACTCCCTCTGTTCCTA 57.240 47.619 0.00 0.00 0.00 2.94
5417 5797 3.759815 AGCTACTCCCTCTGTTCCTAA 57.240 47.619 0.00 0.00 0.00 2.69
5418 5798 4.062490 AGCTACTCCCTCTGTTCCTAAA 57.938 45.455 0.00 0.00 0.00 1.85
5419 5799 4.625963 AGCTACTCCCTCTGTTCCTAAAT 58.374 43.478 0.00 0.00 0.00 1.40
5420 5800 5.033522 AGCTACTCCCTCTGTTCCTAAATT 58.966 41.667 0.00 0.00 0.00 1.82
5421 5801 5.489278 AGCTACTCCCTCTGTTCCTAAATTT 59.511 40.000 0.00 0.00 0.00 1.82
5422 5802 6.672657 AGCTACTCCCTCTGTTCCTAAATTTA 59.327 38.462 0.00 0.00 0.00 1.40
5423 5803 7.182206 AGCTACTCCCTCTGTTCCTAAATTTAA 59.818 37.037 0.00 0.00 0.00 1.52
5424 5804 7.496263 GCTACTCCCTCTGTTCCTAAATTTAAG 59.504 40.741 0.00 0.00 0.00 1.85
5425 5805 6.181190 ACTCCCTCTGTTCCTAAATTTAAGC 58.819 40.000 0.00 0.00 0.00 3.09
5426 5806 6.012421 ACTCCCTCTGTTCCTAAATTTAAGCT 60.012 38.462 0.00 0.00 0.00 3.74
5427 5807 6.790319 TCCCTCTGTTCCTAAATTTAAGCTT 58.210 36.000 3.48 3.48 0.00 3.74
5428 5808 7.238710 TCCCTCTGTTCCTAAATTTAAGCTTT 58.761 34.615 3.20 0.00 0.00 3.51
5429 5809 7.728532 TCCCTCTGTTCCTAAATTTAAGCTTTT 59.271 33.333 3.20 0.00 0.00 2.27
5430 5810 8.367911 CCCTCTGTTCCTAAATTTAAGCTTTTT 58.632 33.333 3.20 1.60 0.00 1.94
5446 5826 7.872113 AAGCTTTTTAGAGATTCCACTATGG 57.128 36.000 0.00 0.00 39.43 2.74
5447 5827 7.200434 AGCTTTTTAGAGATTCCACTATGGA 57.800 36.000 0.00 0.00 46.61 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 102 1.211456 CTTGCTCCTCCTCAGGGAAT 58.789 55.000 0.00 0.00 41.69 3.01
107 109 1.736612 CTTTGCTCTTGCTCCTCCTC 58.263 55.000 0.00 0.00 40.48 3.71
108 110 0.322366 GCTTTGCTCTTGCTCCTCCT 60.322 55.000 0.00 0.00 40.48 3.69
109 111 0.322366 AGCTTTGCTCTTGCTCCTCC 60.322 55.000 0.00 0.00 40.48 4.30
154 156 0.801251 GGTGTGATGCTTGAGTGAGC 59.199 55.000 0.00 0.00 43.00 4.26
155 157 2.028294 AGAGGTGTGATGCTTGAGTGAG 60.028 50.000 0.00 0.00 0.00 3.51
156 158 1.973515 AGAGGTGTGATGCTTGAGTGA 59.026 47.619 0.00 0.00 0.00 3.41
157 159 2.028294 AGAGAGGTGTGATGCTTGAGTG 60.028 50.000 0.00 0.00 0.00 3.51
158 160 2.255406 AGAGAGGTGTGATGCTTGAGT 58.745 47.619 0.00 0.00 0.00 3.41
159 161 3.331478 AAGAGAGGTGTGATGCTTGAG 57.669 47.619 0.00 0.00 0.00 3.02
225 227 3.311511 AAATTTCCGGGGAGGGGGC 62.312 63.158 0.00 0.00 41.52 5.80
229 231 1.548719 GGTTTCAAATTTCCGGGGAGG 59.451 52.381 0.00 0.00 42.97 4.30
231 233 2.158445 TCTGGTTTCAAATTTCCGGGGA 60.158 45.455 0.00 0.00 0.00 4.81
261 269 1.899437 TAAGAGGGTTGCAGGCCTCG 61.899 60.000 0.00 0.00 34.83 4.63
274 282 3.126001 TGCCTGGCGATAATTAAGAGG 57.874 47.619 14.98 0.00 0.00 3.69
278 286 6.320164 AGTTGTTTATGCCTGGCGATAATTAA 59.680 34.615 14.98 12.63 0.00 1.40
287 295 0.532115 CCCAGTTGTTTATGCCTGGC 59.468 55.000 12.87 12.87 42.55 4.85
363 376 3.133003 TCCTTGTGCTTAGCTTAGCCTAG 59.867 47.826 21.18 16.53 40.49 3.02
364 377 3.104512 TCCTTGTGCTTAGCTTAGCCTA 58.895 45.455 21.18 7.97 40.49 3.93
366 379 2.284190 CTCCTTGTGCTTAGCTTAGCC 58.716 52.381 21.18 13.07 40.49 3.93
447 460 0.832135 GAGGGAGAGGGTGTGTGTCA 60.832 60.000 0.00 0.00 0.00 3.58
448 461 0.543174 AGAGGGAGAGGGTGTGTGTC 60.543 60.000 0.00 0.00 0.00 3.67
449 462 0.543174 GAGAGGGAGAGGGTGTGTGT 60.543 60.000 0.00 0.00 0.00 3.72
450 463 1.261238 GGAGAGGGAGAGGGTGTGTG 61.261 65.000 0.00 0.00 0.00 3.82
451 464 1.079438 GGAGAGGGAGAGGGTGTGT 59.921 63.158 0.00 0.00 0.00 3.72
452 465 1.687493 GGGAGAGGGAGAGGGTGTG 60.687 68.421 0.00 0.00 0.00 3.82
453 466 1.864559 AGGGAGAGGGAGAGGGTGT 60.865 63.158 0.00 0.00 0.00 4.16
454 467 1.075600 GAGGGAGAGGGAGAGGGTG 60.076 68.421 0.00 0.00 0.00 4.61
455 468 1.230819 AGAGGGAGAGGGAGAGGGT 60.231 63.158 0.00 0.00 0.00 4.34
456 469 1.232792 CAGAGGGAGAGGGAGAGGG 59.767 68.421 0.00 0.00 0.00 4.30
457 470 1.457455 GCAGAGGGAGAGGGAGAGG 60.457 68.421 0.00 0.00 0.00 3.69
458 471 1.457455 GGCAGAGGGAGAGGGAGAG 60.457 68.421 0.00 0.00 0.00 3.20
459 472 2.693017 GGCAGAGGGAGAGGGAGA 59.307 66.667 0.00 0.00 0.00 3.71
460 473 2.837291 CGGCAGAGGGAGAGGGAG 60.837 72.222 0.00 0.00 0.00 4.30
655 669 9.820725 TGCAAATTTTATATCTCCATGGAAAAG 57.179 29.630 17.00 4.35 0.00 2.27
704 721 5.361571 GGTTTAGTAGAGGAGGAGAAAGAGG 59.638 48.000 0.00 0.00 0.00 3.69
710 729 3.596956 ACCAGGTTTAGTAGAGGAGGAGA 59.403 47.826 0.00 0.00 0.00 3.71
719 738 4.038763 TCACACTCACACCAGGTTTAGTAG 59.961 45.833 0.00 0.00 0.00 2.57
730 749 2.205074 CTCACAACTCACACTCACACC 58.795 52.381 0.00 0.00 0.00 4.16
744 763 1.032794 ACTCACTCGCTCACTCACAA 58.967 50.000 0.00 0.00 0.00 3.33
745 764 1.892209 TACTCACTCGCTCACTCACA 58.108 50.000 0.00 0.00 0.00 3.58
746 765 2.981140 GTTTACTCACTCGCTCACTCAC 59.019 50.000 0.00 0.00 0.00 3.51
747 766 2.030185 GGTTTACTCACTCGCTCACTCA 60.030 50.000 0.00 0.00 0.00 3.41
748 767 2.229302 AGGTTTACTCACTCGCTCACTC 59.771 50.000 0.00 0.00 0.00 3.51
749 768 2.240279 AGGTTTACTCACTCGCTCACT 58.760 47.619 0.00 0.00 0.00 3.41
750 769 2.726832 AGGTTTACTCACTCGCTCAC 57.273 50.000 0.00 0.00 0.00 3.51
751 770 2.866460 GCAAGGTTTACTCACTCGCTCA 60.866 50.000 0.00 0.00 0.00 4.26
752 771 1.727335 GCAAGGTTTACTCACTCGCTC 59.273 52.381 0.00 0.00 0.00 5.03
753 772 1.608283 GGCAAGGTTTACTCACTCGCT 60.608 52.381 0.00 0.00 0.00 4.93
754 773 0.796927 GGCAAGGTTTACTCACTCGC 59.203 55.000 0.00 0.00 0.00 5.03
755 774 1.798813 GTGGCAAGGTTTACTCACTCG 59.201 52.381 0.00 0.00 0.00 4.18
775 794 1.737793 CGTAGCTTTTAGGTGGCTTGG 59.262 52.381 0.00 0.00 37.50 3.61
792 811 0.109735 CAGAGCGCTTGTGTCTCGTA 60.110 55.000 13.26 0.00 32.42 3.43
793 812 1.372251 CAGAGCGCTTGTGTCTCGT 60.372 57.895 13.26 0.00 32.42 4.18
794 813 0.941463 AACAGAGCGCTTGTGTCTCG 60.941 55.000 22.30 8.53 32.42 4.04
795 814 2.065993 TAACAGAGCGCTTGTGTCTC 57.934 50.000 22.30 4.75 0.00 3.36
796 815 2.751166 ATAACAGAGCGCTTGTGTCT 57.249 45.000 22.30 15.77 0.00 3.41
797 816 4.806247 AGATAATAACAGAGCGCTTGTGTC 59.194 41.667 22.30 11.59 0.00 3.67
798 817 4.759782 AGATAATAACAGAGCGCTTGTGT 58.240 39.130 13.26 16.22 0.00 3.72
799 818 6.865726 AGATAGATAATAACAGAGCGCTTGTG 59.134 38.462 13.26 15.48 0.00 3.33
800 819 6.987386 AGATAGATAATAACAGAGCGCTTGT 58.013 36.000 13.26 15.20 0.00 3.16
801 820 7.486551 GGTAGATAGATAATAACAGAGCGCTTG 59.513 40.741 13.26 14.50 0.00 4.01
805 824 7.633193 AGGGTAGATAGATAATAACAGAGCG 57.367 40.000 0.00 0.00 0.00 5.03
859 894 1.672363 TCAGAAGCAACACAAGCACAG 59.328 47.619 0.00 0.00 0.00 3.66
955 990 3.810310 AGCTAGCTACAATGGACTGAC 57.190 47.619 17.69 0.00 0.00 3.51
980 1015 4.883300 GCGTACGACGAGCGAGGG 62.883 72.222 21.65 0.00 46.05 4.30
995 1030 1.375140 ATATCAGGAGGCATGCGCG 60.375 57.895 12.44 0.00 39.92 6.86
1419 1457 0.685097 GGCATAGGCTCACCGGAATA 59.315 55.000 9.46 0.00 42.76 1.75
1422 1460 3.536917 CGGCATAGGCTCACCGGA 61.537 66.667 9.46 0.00 41.95 5.14
1461 1499 1.211703 TGGTTGGAGTTGACAGCAAGA 59.788 47.619 0.00 0.00 34.01 3.02
1464 1502 0.465460 GGTGGTTGGAGTTGACAGCA 60.465 55.000 0.00 0.00 0.00 4.41
1809 1847 1.676635 GATGTTCTGCAGGCTGGCA 60.677 57.895 17.64 13.44 42.53 4.92
2481 2519 1.541233 CCAGACAACCTGTTCGAGCTT 60.541 52.381 0.00 0.00 41.33 3.74
2718 2974 4.298174 CGATCTCGTGAGGTATCTGACCA 61.298 52.174 0.00 0.00 41.96 4.02
3033 3319 2.361992 CTCATGGGCAGCTTGGCA 60.362 61.111 10.86 0.00 45.76 4.92
3036 3322 2.437180 TCGCTCATGGGCAGCTTG 60.437 61.111 19.64 0.00 34.45 4.01
3904 4245 6.785488 TCACTAACTGACAGCAAAAGTATG 57.215 37.500 1.25 0.00 0.00 2.39
3905 4246 6.992715 ACTTCACTAACTGACAGCAAAAGTAT 59.007 34.615 1.25 0.00 0.00 2.12
4460 4816 1.237285 CCTCTTGCTTGGTCCAACGG 61.237 60.000 0.00 0.00 0.00 4.44
4489 4846 2.359478 GTTTGGCGTCACCGGGAT 60.359 61.111 6.32 0.00 43.94 3.85
4614 4972 3.849951 CGATCCCACCCTGTCCGG 61.850 72.222 0.00 0.00 0.00 5.14
4722 5081 5.445939 CGTTGGCTATGGTATTATGCGAATC 60.446 44.000 0.00 0.00 0.00 2.52
4723 5082 4.391830 CGTTGGCTATGGTATTATGCGAAT 59.608 41.667 0.00 0.00 0.00 3.34
4724 5083 3.743911 CGTTGGCTATGGTATTATGCGAA 59.256 43.478 0.00 0.00 0.00 4.70
4807 5166 3.837146 AGTCACACCAAGAGATCACAGAT 59.163 43.478 0.00 0.00 0.00 2.90
4810 5169 2.700371 ACAGTCACACCAAGAGATCACA 59.300 45.455 0.00 0.00 0.00 3.58
4811 5170 3.062763 CACAGTCACACCAAGAGATCAC 58.937 50.000 0.00 0.00 0.00 3.06
4823 5183 1.000274 CGTCACCAGATCACAGTCACA 60.000 52.381 0.00 0.00 0.00 3.58
4908 5278 1.226101 GTCACATGATTGCACGGCG 60.226 57.895 4.80 4.80 0.00 6.46
4911 5281 1.298157 ACCGGTCACATGATTGCACG 61.298 55.000 0.00 0.00 0.00 5.34
4913 5283 0.036022 TCACCGGTCACATGATTGCA 59.964 50.000 2.59 0.00 0.00 4.08
4914 5284 1.382522 ATCACCGGTCACATGATTGC 58.617 50.000 2.59 0.00 28.47 3.56
4915 5285 3.191162 ACAAATCACCGGTCACATGATTG 59.809 43.478 15.64 11.40 41.17 2.67
5031 5411 2.358125 CACCACCGATTGTCGCCA 60.358 61.111 0.00 0.00 38.82 5.69
5076 5456 0.525668 CGCTCGCCACTAGTAACCTG 60.526 60.000 0.00 0.00 0.00 4.00
5086 5466 1.154225 CCAATTTCACGCTCGCCAC 60.154 57.895 0.00 0.00 0.00 5.01
5087 5467 0.886938 TTCCAATTTCACGCTCGCCA 60.887 50.000 0.00 0.00 0.00 5.69
5088 5468 0.239879 TTTCCAATTTCACGCTCGCC 59.760 50.000 0.00 0.00 0.00 5.54
5089 5469 2.262572 ATTTCCAATTTCACGCTCGC 57.737 45.000 0.00 0.00 0.00 5.03
5090 5470 5.390613 AGTAAATTTCCAATTTCACGCTCG 58.609 37.500 0.00 0.00 0.00 5.03
5091 5471 5.800438 GGAGTAAATTTCCAATTTCACGCTC 59.200 40.000 0.00 3.65 34.74 5.03
5092 5472 5.476945 AGGAGTAAATTTCCAATTTCACGCT 59.523 36.000 0.00 0.00 37.18 5.07
5093 5473 5.709966 AGGAGTAAATTTCCAATTTCACGC 58.290 37.500 0.00 0.00 37.18 5.34
5094 5474 9.341899 CTAAAGGAGTAAATTTCCAATTTCACG 57.658 33.333 0.00 0.00 37.18 4.35
5095 5475 9.639601 CCTAAAGGAGTAAATTTCCAATTTCAC 57.360 33.333 0.00 0.00 37.18 3.18
5096 5476 8.311109 GCCTAAAGGAGTAAATTTCCAATTTCA 58.689 33.333 0.00 0.00 37.18 2.69
5097 5477 7.764443 GGCCTAAAGGAGTAAATTTCCAATTTC 59.236 37.037 0.00 0.00 37.18 2.17
5098 5478 7.236640 TGGCCTAAAGGAGTAAATTTCCAATTT 59.763 33.333 3.32 0.44 37.18 1.82
5099 5479 6.728632 TGGCCTAAAGGAGTAAATTTCCAATT 59.271 34.615 3.32 0.00 37.18 2.32
5100 5480 6.260663 TGGCCTAAAGGAGTAAATTTCCAAT 58.739 36.000 3.32 0.00 37.18 3.16
5101 5481 5.646215 TGGCCTAAAGGAGTAAATTTCCAA 58.354 37.500 3.32 0.00 37.18 3.53
5102 5482 5.261216 CTGGCCTAAAGGAGTAAATTTCCA 58.739 41.667 3.32 0.00 37.18 3.53
5103 5483 4.645136 CCTGGCCTAAAGGAGTAAATTTCC 59.355 45.833 3.32 0.00 36.91 3.13
5104 5484 4.098044 GCCTGGCCTAAAGGAGTAAATTTC 59.902 45.833 11.80 0.00 36.91 2.17
5105 5485 4.023980 GCCTGGCCTAAAGGAGTAAATTT 58.976 43.478 11.80 0.00 36.91 1.82
5106 5486 3.627492 GGCCTGGCCTAAAGGAGTAAATT 60.627 47.826 30.42 0.00 46.69 1.82
5107 5487 2.091830 GGCCTGGCCTAAAGGAGTAAAT 60.092 50.000 30.42 0.00 46.69 1.40
5108 5488 1.283905 GGCCTGGCCTAAAGGAGTAAA 59.716 52.381 30.42 0.00 46.69 2.01
5109 5489 0.916809 GGCCTGGCCTAAAGGAGTAA 59.083 55.000 30.42 0.00 46.69 2.24
5110 5490 2.616489 GGCCTGGCCTAAAGGAGTA 58.384 57.895 30.42 0.00 46.69 2.59
5111 5491 3.416351 GGCCTGGCCTAAAGGAGT 58.584 61.111 30.42 0.00 46.69 3.85
5143 5523 3.454573 ATTGCATGGCCCAGCGTG 61.455 61.111 11.37 0.00 0.00 5.34
5144 5524 3.454573 CATTGCATGGCCCAGCGT 61.455 61.111 11.37 0.97 0.00 5.07
5145 5525 2.894240 GAACATTGCATGGCCCAGCG 62.894 60.000 11.37 1.04 33.60 5.18
5146 5526 1.153509 GAACATTGCATGGCCCAGC 60.154 57.895 9.43 9.43 33.60 4.85
5147 5527 0.174845 CTGAACATTGCATGGCCCAG 59.825 55.000 0.00 0.00 33.60 4.45
5148 5528 0.251698 TCTGAACATTGCATGGCCCA 60.252 50.000 0.00 0.00 33.60 5.36
5149 5529 0.458669 CTCTGAACATTGCATGGCCC 59.541 55.000 0.00 0.00 33.60 5.80
5150 5530 0.179119 GCTCTGAACATTGCATGGCC 60.179 55.000 0.00 0.00 33.60 5.36
5151 5531 0.815734 AGCTCTGAACATTGCATGGC 59.184 50.000 0.00 0.00 33.60 4.40
5152 5532 1.816835 ACAGCTCTGAACATTGCATGG 59.183 47.619 3.60 0.00 33.60 3.66
5153 5533 2.228103 ACACAGCTCTGAACATTGCATG 59.772 45.455 3.60 0.00 0.00 4.06
5154 5534 2.228103 CACACAGCTCTGAACATTGCAT 59.772 45.455 3.60 0.00 0.00 3.96
5155 5535 1.605232 CACACAGCTCTGAACATTGCA 59.395 47.619 3.60 0.00 0.00 4.08
5156 5536 1.068748 CCACACAGCTCTGAACATTGC 60.069 52.381 3.60 0.00 0.00 3.56
5157 5537 1.538512 CCCACACAGCTCTGAACATTG 59.461 52.381 3.60 0.00 0.00 2.82
5158 5538 1.143684 ACCCACACAGCTCTGAACATT 59.856 47.619 3.60 0.00 0.00 2.71
5159 5539 0.767375 ACCCACACAGCTCTGAACAT 59.233 50.000 3.60 0.00 0.00 2.71
5160 5540 0.179048 CACCCACACAGCTCTGAACA 60.179 55.000 3.60 0.00 0.00 3.18
5161 5541 0.886490 CCACCCACACAGCTCTGAAC 60.886 60.000 3.60 0.00 0.00 3.18
5162 5542 1.451504 CCACCCACACAGCTCTGAA 59.548 57.895 3.60 0.00 0.00 3.02
5163 5543 2.519622 CCCACCCACACAGCTCTGA 61.520 63.158 3.60 0.00 0.00 3.27
5164 5544 2.033141 CCCACCCACACAGCTCTG 59.967 66.667 0.00 0.00 0.00 3.35
5165 5545 3.252284 CCCCACCCACACAGCTCT 61.252 66.667 0.00 0.00 0.00 4.09
5169 5549 4.704833 CGAGCCCCACCCACACAG 62.705 72.222 0.00 0.00 0.00 3.66
5171 5551 4.699522 GACGAGCCCCACCCACAC 62.700 72.222 0.00 0.00 0.00 3.82
5175 5555 4.754667 GTTCGACGAGCCCCACCC 62.755 72.222 0.00 0.00 0.00 4.61
5176 5556 2.798148 AATGTTCGACGAGCCCCACC 62.798 60.000 9.31 0.00 0.00 4.61
5177 5557 0.953960 AAATGTTCGACGAGCCCCAC 60.954 55.000 9.31 0.00 0.00 4.61
5178 5558 0.953471 CAAATGTTCGACGAGCCCCA 60.953 55.000 9.31 0.60 0.00 4.96
5179 5559 0.953960 ACAAATGTTCGACGAGCCCC 60.954 55.000 9.31 0.00 0.00 5.80
5180 5560 0.442699 GACAAATGTTCGACGAGCCC 59.557 55.000 9.31 0.00 0.00 5.19
5181 5561 1.126846 CAGACAAATGTTCGACGAGCC 59.873 52.381 9.31 0.00 0.00 4.70
5182 5562 1.462541 GCAGACAAATGTTCGACGAGC 60.463 52.381 4.57 4.57 0.00 5.03
5183 5563 1.126846 GGCAGACAAATGTTCGACGAG 59.873 52.381 0.00 0.00 0.00 4.18
5184 5564 1.144969 GGCAGACAAATGTTCGACGA 58.855 50.000 0.00 0.00 0.00 4.20
5185 5565 1.148310 AGGCAGACAAATGTTCGACG 58.852 50.000 0.00 0.00 0.00 5.12
5186 5566 3.326747 AGTAGGCAGACAAATGTTCGAC 58.673 45.455 0.00 0.00 0.00 4.20
5187 5567 3.678056 AGTAGGCAGACAAATGTTCGA 57.322 42.857 0.00 0.00 0.00 3.71
5188 5568 4.688879 TGTAAGTAGGCAGACAAATGTTCG 59.311 41.667 0.00 0.00 0.00 3.95
5189 5569 5.390991 GCTGTAAGTAGGCAGACAAATGTTC 60.391 44.000 0.00 0.00 35.30 3.18
5190 5570 4.455877 GCTGTAAGTAGGCAGACAAATGTT 59.544 41.667 0.00 0.00 35.30 2.71
5191 5571 4.003648 GCTGTAAGTAGGCAGACAAATGT 58.996 43.478 0.00 0.00 35.30 2.71
5192 5572 4.256920 AGCTGTAAGTAGGCAGACAAATG 58.743 43.478 0.00 0.00 35.30 2.32
5193 5573 4.559862 AGCTGTAAGTAGGCAGACAAAT 57.440 40.909 0.00 0.00 35.30 2.32
5194 5574 4.202315 TGAAGCTGTAAGTAGGCAGACAAA 60.202 41.667 0.00 0.00 35.30 2.83
5195 5575 3.323691 TGAAGCTGTAAGTAGGCAGACAA 59.676 43.478 0.00 0.00 35.30 3.18
5196 5576 2.897326 TGAAGCTGTAAGTAGGCAGACA 59.103 45.455 0.00 0.00 35.30 3.41
5197 5577 3.594603 TGAAGCTGTAAGTAGGCAGAC 57.405 47.619 0.00 0.00 35.30 3.51
5198 5578 3.769300 TCATGAAGCTGTAAGTAGGCAGA 59.231 43.478 0.00 0.00 35.30 4.26
5199 5579 4.118410 CTCATGAAGCTGTAAGTAGGCAG 58.882 47.826 0.00 0.00 35.30 4.85
5200 5580 3.515502 ACTCATGAAGCTGTAAGTAGGCA 59.484 43.478 0.00 0.00 35.30 4.75
5201 5581 4.130286 ACTCATGAAGCTGTAAGTAGGC 57.870 45.455 0.00 0.00 35.30 3.93
5202 5582 6.402222 AGAAACTCATGAAGCTGTAAGTAGG 58.598 40.000 0.00 0.00 35.30 3.18
5203 5583 7.093354 TGAGAAACTCATGAAGCTGTAAGTAG 58.907 38.462 0.00 0.00 35.39 2.57
5204 5584 6.993079 TGAGAAACTCATGAAGCTGTAAGTA 58.007 36.000 0.00 0.00 35.39 2.24
5205 5585 5.858381 TGAGAAACTCATGAAGCTGTAAGT 58.142 37.500 0.00 0.00 35.39 2.24
5206 5586 6.791887 TTGAGAAACTCATGAAGCTGTAAG 57.208 37.500 0.00 0.00 40.39 2.34
5207 5587 7.566760 TTTTGAGAAACTCATGAAGCTGTAA 57.433 32.000 0.00 0.00 40.39 2.41
5208 5588 7.566760 TTTTTGAGAAACTCATGAAGCTGTA 57.433 32.000 0.00 0.00 40.39 2.74
5209 5589 6.455360 TTTTTGAGAAACTCATGAAGCTGT 57.545 33.333 0.00 0.00 40.39 4.40
5243 5623 8.114331 TCATTCATGAAGCTGTAGTGATTTTT 57.886 30.769 14.54 0.00 33.08 1.94
5244 5624 7.392673 ACTCATTCATGAAGCTGTAGTGATTTT 59.607 33.333 14.54 0.00 36.18 1.82
5245 5625 6.883217 ACTCATTCATGAAGCTGTAGTGATTT 59.117 34.615 14.54 0.00 36.18 2.17
5246 5626 6.413052 ACTCATTCATGAAGCTGTAGTGATT 58.587 36.000 14.54 2.55 36.18 2.57
5247 5627 5.987098 ACTCATTCATGAAGCTGTAGTGAT 58.013 37.500 14.54 0.00 36.18 3.06
5248 5628 5.411831 ACTCATTCATGAAGCTGTAGTGA 57.588 39.130 14.54 9.52 36.18 3.41
5249 5629 7.601073 TTTACTCATTCATGAAGCTGTAGTG 57.399 36.000 14.54 5.51 36.18 2.74
5250 5630 6.314896 GCTTTACTCATTCATGAAGCTGTAGT 59.685 38.462 14.54 13.97 35.27 2.73
5251 5631 6.314648 TGCTTTACTCATTCATGAAGCTGTAG 59.685 38.462 14.54 9.68 37.65 2.74
5252 5632 6.092670 GTGCTTTACTCATTCATGAAGCTGTA 59.907 38.462 14.54 12.37 37.65 2.74
5253 5633 5.005740 TGCTTTACTCATTCATGAAGCTGT 58.994 37.500 14.54 13.27 37.65 4.40
5254 5634 5.330295 GTGCTTTACTCATTCATGAAGCTG 58.670 41.667 14.54 8.43 37.65 4.24
5255 5635 4.397417 GGTGCTTTACTCATTCATGAAGCT 59.603 41.667 14.54 0.00 37.65 3.74
5256 5636 4.397417 AGGTGCTTTACTCATTCATGAAGC 59.603 41.667 14.54 9.36 37.42 3.86
5257 5637 7.798596 ATAGGTGCTTTACTCATTCATGAAG 57.201 36.000 14.54 2.68 36.18 3.02
5258 5638 7.442364 GCTATAGGTGCTTTACTCATTCATGAA 59.558 37.037 11.26 11.26 36.18 2.57
5259 5639 6.931281 GCTATAGGTGCTTTACTCATTCATGA 59.069 38.462 1.04 0.00 35.16 3.07
5260 5640 6.933521 AGCTATAGGTGCTTTACTCATTCATG 59.066 38.462 3.03 0.00 37.52 3.07
5261 5641 7.072263 AGCTATAGGTGCTTTACTCATTCAT 57.928 36.000 3.03 0.00 37.52 2.57
5262 5642 6.098266 TGAGCTATAGGTGCTTTACTCATTCA 59.902 38.462 9.66 0.00 41.30 2.57
5263 5643 6.516718 TGAGCTATAGGTGCTTTACTCATTC 58.483 40.000 9.66 0.00 41.30 2.67
5264 5644 6.463614 CCTGAGCTATAGGTGCTTTACTCATT 60.464 42.308 9.66 0.00 41.30 2.57
5265 5645 5.011533 CCTGAGCTATAGGTGCTTTACTCAT 59.988 44.000 9.66 0.00 41.30 2.90
5266 5646 4.342378 CCTGAGCTATAGGTGCTTTACTCA 59.658 45.833 9.66 5.81 41.30 3.41
5267 5647 4.342665 ACCTGAGCTATAGGTGCTTTACTC 59.657 45.833 18.67 1.21 46.48 2.59
5268 5648 4.290942 ACCTGAGCTATAGGTGCTTTACT 58.709 43.478 18.67 0.00 46.48 2.24
5269 5649 4.674281 ACCTGAGCTATAGGTGCTTTAC 57.326 45.455 18.67 0.00 46.48 2.01
5277 5657 1.709578 TCAGGCACCTGAGCTATAGG 58.290 55.000 15.46 13.57 46.80 2.57
5286 5666 4.947645 TGAAAAGAAAAATCAGGCACCTG 58.052 39.130 10.60 10.60 44.86 4.00
5287 5667 5.070847 ACATGAAAAGAAAAATCAGGCACCT 59.929 36.000 0.00 0.00 0.00 4.00
5288 5668 5.299949 ACATGAAAAGAAAAATCAGGCACC 58.700 37.500 0.00 0.00 0.00 5.01
5289 5669 6.849588 AACATGAAAAGAAAAATCAGGCAC 57.150 33.333 0.00 0.00 0.00 5.01
5290 5670 7.046652 TGAAACATGAAAAGAAAAATCAGGCA 58.953 30.769 0.00 0.00 0.00 4.75
5291 5671 7.225341 ACTGAAACATGAAAAGAAAAATCAGGC 59.775 33.333 0.00 0.00 35.94 4.85
5292 5672 8.652810 ACTGAAACATGAAAAGAAAAATCAGG 57.347 30.769 0.00 0.00 35.94 3.86
5293 5673 9.304731 TGACTGAAACATGAAAAGAAAAATCAG 57.695 29.630 0.00 0.00 37.26 2.90
5294 5674 9.086336 GTGACTGAAACATGAAAAGAAAAATCA 57.914 29.630 0.00 0.00 0.00 2.57
5295 5675 9.305925 AGTGACTGAAACATGAAAAGAAAAATC 57.694 29.630 0.00 0.00 0.00 2.17
5296 5676 9.657419 AAGTGACTGAAACATGAAAAGAAAAAT 57.343 25.926 0.00 0.00 0.00 1.82
5297 5677 9.139174 GAAGTGACTGAAACATGAAAAGAAAAA 57.861 29.630 0.00 0.00 0.00 1.94
5298 5678 8.522830 AGAAGTGACTGAAACATGAAAAGAAAA 58.477 29.630 0.00 0.00 0.00 2.29
5299 5679 8.055279 AGAAGTGACTGAAACATGAAAAGAAA 57.945 30.769 0.00 0.00 0.00 2.52
5300 5680 7.630242 AGAAGTGACTGAAACATGAAAAGAA 57.370 32.000 0.00 0.00 0.00 2.52
5301 5681 7.630242 AAGAAGTGACTGAAACATGAAAAGA 57.370 32.000 0.00 0.00 0.00 2.52
5302 5682 8.693542 AAAAGAAGTGACTGAAACATGAAAAG 57.306 30.769 0.00 0.00 0.00 2.27
5303 5683 9.139174 GAAAAAGAAGTGACTGAAACATGAAAA 57.861 29.630 0.00 0.00 0.00 2.29
5304 5684 8.522830 AGAAAAAGAAGTGACTGAAACATGAAA 58.477 29.630 0.00 0.00 0.00 2.69
5305 5685 8.055279 AGAAAAAGAAGTGACTGAAACATGAA 57.945 30.769 0.00 0.00 0.00 2.57
5306 5686 7.630242 AGAAAAAGAAGTGACTGAAACATGA 57.370 32.000 0.00 0.00 0.00 3.07
5307 5687 9.604626 GATAGAAAAAGAAGTGACTGAAACATG 57.395 33.333 0.00 0.00 0.00 3.21
5308 5688 8.787852 GGATAGAAAAAGAAGTGACTGAAACAT 58.212 33.333 0.00 0.00 0.00 2.71
5309 5689 7.773224 TGGATAGAAAAAGAAGTGACTGAAACA 59.227 33.333 0.00 0.00 0.00 2.83
5310 5690 8.154649 TGGATAGAAAAAGAAGTGACTGAAAC 57.845 34.615 0.00 0.00 0.00 2.78
5311 5691 8.786898 CATGGATAGAAAAAGAAGTGACTGAAA 58.213 33.333 0.00 0.00 0.00 2.69
5312 5692 8.156820 TCATGGATAGAAAAAGAAGTGACTGAA 58.843 33.333 0.00 0.00 0.00 3.02
5313 5693 7.679783 TCATGGATAGAAAAAGAAGTGACTGA 58.320 34.615 0.00 0.00 0.00 3.41
5314 5694 7.821359 TCTCATGGATAGAAAAAGAAGTGACTG 59.179 37.037 0.00 0.00 0.00 3.51
5315 5695 7.911651 TCTCATGGATAGAAAAAGAAGTGACT 58.088 34.615 0.00 0.00 0.00 3.41
5316 5696 8.610896 CATCTCATGGATAGAAAAAGAAGTGAC 58.389 37.037 0.00 0.00 32.64 3.67
5317 5697 8.324306 ACATCTCATGGATAGAAAAAGAAGTGA 58.676 33.333 0.00 0.00 32.64 3.41
5318 5698 8.503458 ACATCTCATGGATAGAAAAAGAAGTG 57.497 34.615 0.00 0.00 32.64 3.16
5319 5699 8.324306 TGACATCTCATGGATAGAAAAAGAAGT 58.676 33.333 0.00 0.00 32.64 3.01
5320 5700 8.728337 TGACATCTCATGGATAGAAAAAGAAG 57.272 34.615 0.00 0.00 32.64 2.85
5321 5701 9.690913 ATTGACATCTCATGGATAGAAAAAGAA 57.309 29.630 0.00 0.00 32.64 2.52
5322 5702 9.334947 GATTGACATCTCATGGATAGAAAAAGA 57.665 33.333 0.00 0.00 32.64 2.52
5323 5703 9.339850 AGATTGACATCTCATGGATAGAAAAAG 57.660 33.333 0.00 0.00 34.26 2.27
5329 5709 9.531942 GCTATTAGATTGACATCTCATGGATAG 57.468 37.037 0.00 0.00 40.53 2.08
5330 5710 9.264653 AGCTATTAGATTGACATCTCATGGATA 57.735 33.333 0.00 0.00 40.53 2.59
5331 5711 8.148437 AGCTATTAGATTGACATCTCATGGAT 57.852 34.615 0.00 0.00 40.53 3.41
5332 5712 7.550597 AGCTATTAGATTGACATCTCATGGA 57.449 36.000 0.00 0.00 40.53 3.41
5333 5713 9.149225 GTAAGCTATTAGATTGACATCTCATGG 57.851 37.037 4.47 0.00 40.53 3.66
5334 5714 9.926158 AGTAAGCTATTAGATTGACATCTCATG 57.074 33.333 4.47 0.00 40.53 3.07
5336 5716 9.973450 GAAGTAAGCTATTAGATTGACATCTCA 57.027 33.333 4.47 0.00 40.53 3.27
5349 5729 9.901172 CCCCTAAGAAAAAGAAGTAAGCTATTA 57.099 33.333 0.00 0.00 0.00 0.98
5350 5730 8.391699 ACCCCTAAGAAAAAGAAGTAAGCTATT 58.608 33.333 0.00 0.00 0.00 1.73
5351 5731 7.929959 ACCCCTAAGAAAAAGAAGTAAGCTAT 58.070 34.615 0.00 0.00 0.00 2.97
5352 5732 7.325725 ACCCCTAAGAAAAAGAAGTAAGCTA 57.674 36.000 0.00 0.00 0.00 3.32
5353 5733 6.202202 ACCCCTAAGAAAAAGAAGTAAGCT 57.798 37.500 0.00 0.00 0.00 3.74
5354 5734 6.938596 TGTACCCCTAAGAAAAAGAAGTAAGC 59.061 38.462 0.00 0.00 0.00 3.09
5355 5735 8.781196 GTTGTACCCCTAAGAAAAAGAAGTAAG 58.219 37.037 0.00 0.00 0.00 2.34
5356 5736 8.496916 AGTTGTACCCCTAAGAAAAAGAAGTAA 58.503 33.333 0.00 0.00 0.00 2.24
5357 5737 8.037723 AGTTGTACCCCTAAGAAAAAGAAGTA 57.962 34.615 0.00 0.00 0.00 2.24
5358 5738 6.907961 AGTTGTACCCCTAAGAAAAAGAAGT 58.092 36.000 0.00 0.00 0.00 3.01
5359 5739 8.913487 TTAGTTGTACCCCTAAGAAAAAGAAG 57.087 34.615 0.00 0.00 0.00 2.85
5360 5740 8.496916 ACTTAGTTGTACCCCTAAGAAAAAGAA 58.503 33.333 24.44 0.00 41.65 2.52
5361 5741 8.037723 ACTTAGTTGTACCCCTAAGAAAAAGA 57.962 34.615 24.44 0.00 41.65 2.52
5362 5742 8.687292 AACTTAGTTGTACCCCTAAGAAAAAG 57.313 34.615 24.44 9.16 41.65 2.27
5363 5743 9.478238 AAAACTTAGTTGTACCCCTAAGAAAAA 57.522 29.630 24.44 0.00 41.65 1.94
5364 5744 8.905850 CAAAACTTAGTTGTACCCCTAAGAAAA 58.094 33.333 24.44 0.00 41.65 2.29
5365 5745 8.273605 TCAAAACTTAGTTGTACCCCTAAGAAA 58.726 33.333 24.44 9.98 41.65 2.52
5366 5746 7.804147 TCAAAACTTAGTTGTACCCCTAAGAA 58.196 34.615 24.44 9.75 41.65 2.52
5367 5747 7.377696 TCAAAACTTAGTTGTACCCCTAAGA 57.622 36.000 24.44 8.52 41.65 2.10
5368 5748 8.512138 CAATCAAAACTTAGTTGTACCCCTAAG 58.488 37.037 19.46 19.46 43.66 2.18
5369 5749 8.219178 TCAATCAAAACTTAGTTGTACCCCTAA 58.781 33.333 0.00 0.00 0.00 2.69
5370 5750 7.747690 TCAATCAAAACTTAGTTGTACCCCTA 58.252 34.615 0.00 0.00 0.00 3.53
5371 5751 6.607019 TCAATCAAAACTTAGTTGTACCCCT 58.393 36.000 0.00 0.00 0.00 4.79
5372 5752 6.887626 TCAATCAAAACTTAGTTGTACCCC 57.112 37.500 0.00 0.00 0.00 4.95
5373 5753 7.381408 GCTTTCAATCAAAACTTAGTTGTACCC 59.619 37.037 0.00 0.00 0.00 3.69
5374 5754 8.135529 AGCTTTCAATCAAAACTTAGTTGTACC 58.864 33.333 0.00 0.00 0.00 3.34
5377 5757 8.903820 AGTAGCTTTCAATCAAAACTTAGTTGT 58.096 29.630 0.00 0.00 0.00 3.32
5378 5758 9.387123 GAGTAGCTTTCAATCAAAACTTAGTTG 57.613 33.333 0.00 0.00 0.00 3.16
5379 5759 8.568794 GGAGTAGCTTTCAATCAAAACTTAGTT 58.431 33.333 0.00 0.00 0.00 2.24
5380 5760 7.175119 GGGAGTAGCTTTCAATCAAAACTTAGT 59.825 37.037 0.00 0.00 0.00 2.24
5381 5761 7.391833 AGGGAGTAGCTTTCAATCAAAACTTAG 59.608 37.037 0.00 0.00 0.00 2.18
5382 5762 7.231467 AGGGAGTAGCTTTCAATCAAAACTTA 58.769 34.615 0.00 0.00 0.00 2.24
5383 5763 6.071320 AGGGAGTAGCTTTCAATCAAAACTT 58.929 36.000 0.00 0.00 0.00 2.66
5384 5764 5.635120 AGGGAGTAGCTTTCAATCAAAACT 58.365 37.500 0.00 0.00 0.00 2.66
5385 5765 5.707764 AGAGGGAGTAGCTTTCAATCAAAAC 59.292 40.000 0.00 0.00 0.00 2.43
5386 5766 5.707298 CAGAGGGAGTAGCTTTCAATCAAAA 59.293 40.000 0.00 0.00 0.00 2.44
5387 5767 5.221925 ACAGAGGGAGTAGCTTTCAATCAAA 60.222 40.000 0.00 0.00 0.00 2.69
5388 5768 4.287067 ACAGAGGGAGTAGCTTTCAATCAA 59.713 41.667 0.00 0.00 0.00 2.57
5389 5769 3.840666 ACAGAGGGAGTAGCTTTCAATCA 59.159 43.478 0.00 0.00 0.00 2.57
5390 5770 4.479786 ACAGAGGGAGTAGCTTTCAATC 57.520 45.455 0.00 0.00 0.00 2.67
5391 5771 4.323868 GGAACAGAGGGAGTAGCTTTCAAT 60.324 45.833 0.00 0.00 0.00 2.57
5392 5772 3.008049 GGAACAGAGGGAGTAGCTTTCAA 59.992 47.826 0.00 0.00 0.00 2.69
5393 5773 2.567615 GGAACAGAGGGAGTAGCTTTCA 59.432 50.000 0.00 0.00 0.00 2.69
5394 5774 2.835156 AGGAACAGAGGGAGTAGCTTTC 59.165 50.000 0.00 0.00 0.00 2.62
5395 5775 2.909217 AGGAACAGAGGGAGTAGCTTT 58.091 47.619 0.00 0.00 0.00 3.51
5396 5776 2.632763 AGGAACAGAGGGAGTAGCTT 57.367 50.000 0.00 0.00 0.00 3.74
5397 5777 3.759815 TTAGGAACAGAGGGAGTAGCT 57.240 47.619 0.00 0.00 0.00 3.32
5398 5778 5.360649 AATTTAGGAACAGAGGGAGTAGC 57.639 43.478 0.00 0.00 0.00 3.58
5399 5779 7.496263 GCTTAAATTTAGGAACAGAGGGAGTAG 59.504 40.741 11.24 0.00 0.00 2.57
5400 5780 7.182206 AGCTTAAATTTAGGAACAGAGGGAGTA 59.818 37.037 11.24 0.00 0.00 2.59
5401 5781 6.012421 AGCTTAAATTTAGGAACAGAGGGAGT 60.012 38.462 11.24 0.00 0.00 3.85
5402 5782 6.418946 AGCTTAAATTTAGGAACAGAGGGAG 58.581 40.000 11.24 0.00 0.00 4.30
5403 5783 6.388619 AGCTTAAATTTAGGAACAGAGGGA 57.611 37.500 11.24 0.00 0.00 4.20
5404 5784 7.468141 AAAGCTTAAATTTAGGAACAGAGGG 57.532 36.000 11.24 0.00 0.00 4.30
5420 5800 9.396022 CCATAGTGGAATCTCTAAAAAGCTTAA 57.604 33.333 0.00 0.00 40.96 1.85
5421 5801 8.768397 TCCATAGTGGAATCTCTAAAAAGCTTA 58.232 33.333 0.00 0.00 45.00 3.09
5422 5802 7.633789 TCCATAGTGGAATCTCTAAAAAGCTT 58.366 34.615 0.00 0.00 45.00 3.74
5423 5803 7.200434 TCCATAGTGGAATCTCTAAAAAGCT 57.800 36.000 0.00 0.00 45.00 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.