Multiple sequence alignment - TraesCS3D01G091900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G091900 chr3D 100.000 2979 0 0 1 2979 46479550 46476572 0.000000e+00 5502.0
1 TraesCS3D01G091900 chr3A 92.466 1752 86 23 36 1760 57898861 57897129 0.000000e+00 2462.0
2 TraesCS3D01G091900 chr3A 89.326 356 7 9 2631 2979 57896751 57896420 4.590000e-113 418.0
3 TraesCS3D01G091900 chr3A 81.716 268 21 12 2243 2509 13912883 13912643 6.510000e-47 198.0
4 TraesCS3D01G091900 chr3B 91.406 1245 62 28 30 1252 72709586 72708365 0.000000e+00 1664.0
5 TraesCS3D01G091900 chr3B 83.795 975 81 32 1292 2215 72708363 72707415 0.000000e+00 854.0
6 TraesCS3D01G091900 chr3B 90.307 423 33 3 2557 2979 72488730 72488316 5.610000e-152 547.0
7 TraesCS3D01G091900 chr3B 90.000 110 11 0 2243 2352 235854559 235854668 3.100000e-30 143.0
8 TraesCS3D01G091900 chr3B 88.182 110 10 3 39 147 72709445 72709338 8.670000e-26 128.0
9 TraesCS3D01G091900 chr3B 100.000 30 0 0 1 30 72709599 72709570 4.150000e-04 56.5
10 TraesCS3D01G091900 chr5B 91.667 252 21 0 2728 2979 562419021 562419272 1.700000e-92 350.0
11 TraesCS3D01G091900 chr5B 89.286 112 12 0 2241 2352 485874810 485874699 1.110000e-29 141.0
12 TraesCS3D01G091900 chr5B 89.091 110 12 0 2243 2352 459491710 459491601 1.440000e-28 137.0
13 TraesCS3D01G091900 chr2B 92.857 238 17 0 2742 2979 5489073 5488836 2.200000e-91 346.0
14 TraesCS3D01G091900 chr2B 78.519 270 32 14 2243 2512 143270078 143270321 1.430000e-33 154.0
15 TraesCS3D01G091900 chr2B 82.353 119 19 2 2234 2352 680815201 680815085 5.250000e-18 102.0
16 TraesCS3D01G091900 chr2B 90.698 43 2 2 2231 2271 797642956 797642914 4.150000e-04 56.5
17 TraesCS3D01G091900 chr1B 88.571 245 27 1 2735 2979 493683691 493683448 2.250000e-76 296.0
18 TraesCS3D01G091900 chr1B 77.698 278 34 16 2232 2509 625394594 625394843 8.610000e-31 145.0
19 TraesCS3D01G091900 chr1A 86.111 252 20 1 2728 2979 541158536 541158300 1.060000e-64 257.0
20 TraesCS3D01G091900 chr5D 80.488 287 35 10 2243 2509 69096395 69096680 1.810000e-47 200.0
21 TraesCS3D01G091900 chr5D 79.026 267 30 13 2243 2509 460070799 460070559 3.070000e-35 159.0
22 TraesCS3D01G091900 chr4A 79.928 279 30 12 2241 2519 89431043 89430791 6.560000e-42 182.0
23 TraesCS3D01G091900 chr7A 80.242 248 39 5 2244 2487 532476472 532476713 8.490000e-41 178.0
24 TraesCS3D01G091900 chr7A 76.812 276 37 9 2235 2509 717839032 717838783 2.410000e-26 130.0
25 TraesCS3D01G091900 chr7A 80.833 120 19 4 2235 2352 516995909 516995792 1.140000e-14 91.6
26 TraesCS3D01G091900 chr6D 79.851 268 28 10 2242 2509 464536538 464536779 3.950000e-39 172.0
27 TraesCS3D01G091900 chr6D 87.903 124 13 2 2230 2352 418956974 418957096 8.610000e-31 145.0
28 TraesCS3D01G091900 chr4B 80.508 236 33 12 2278 2509 608674677 608674903 5.110000e-38 169.0
29 TraesCS3D01G091900 chr2D 79.401 267 29 11 2243 2509 568236352 568236112 6.610000e-37 165.0
30 TraesCS3D01G091900 chr2D 89.076 119 13 0 2243 2361 71386571 71386453 6.650000e-32 148.0
31 TraesCS3D01G091900 chr4D 83.648 159 18 5 2351 2509 500720299 500720149 3.100000e-30 143.0
32 TraesCS3D01G091900 chrUn 83.226 155 18 4 2355 2509 94991250 94991396 5.180000e-28 135.0
33 TraesCS3D01G091900 chr6A 86.290 124 15 2 2230 2352 562528373 562528495 1.860000e-27 134.0
34 TraesCS3D01G091900 chr7B 96.154 78 2 1 2745 2822 432764322 432764246 3.120000e-25 126.0
35 TraesCS3D01G091900 chr1D 83.761 117 17 2 2229 2345 377374060 377374174 3.140000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G091900 chr3D 46476572 46479550 2978 True 5502.000 5502 100.00000 1 2979 1 chr3D.!!$R1 2978
1 TraesCS3D01G091900 chr3A 57896420 57898861 2441 True 1440.000 2462 90.89600 36 2979 2 chr3A.!!$R2 2943
2 TraesCS3D01G091900 chr3B 72707415 72709599 2184 True 675.625 1664 90.84575 1 2215 4 chr3B.!!$R2 2214

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
530 538 0.395586 TGGTTGCTGCTTTGGTGAGT 60.396 50.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2038 2165 0.027979 CGTTCTCGCGGACGGTATTA 59.972 55.0 18.23 0.0 40.63 0.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.579666 TGCATTTCTCTGCAGTATTTTCTT 57.420 33.333 14.67 0.00 46.76 2.52
25 26 6.985117 TGCATTTCTCTGCAGTATTTTCTTT 58.015 32.000 14.67 0.00 46.76 2.52
26 27 8.109705 TGCATTTCTCTGCAGTATTTTCTTTA 57.890 30.769 14.67 0.00 46.76 1.85
27 28 8.239314 TGCATTTCTCTGCAGTATTTTCTTTAG 58.761 33.333 14.67 0.00 46.76 1.85
28 29 8.454106 GCATTTCTCTGCAGTATTTTCTTTAGA 58.546 33.333 14.67 1.77 41.87 2.10
29 30 9.766277 CATTTCTCTGCAGTATTTTCTTTAGAC 57.234 33.333 14.67 0.00 0.00 2.59
30 31 8.902540 TTTCTCTGCAGTATTTTCTTTAGACA 57.097 30.769 14.67 0.00 0.00 3.41
31 32 8.539770 TTCTCTGCAGTATTTTCTTTAGACAG 57.460 34.615 14.67 0.00 0.00 3.51
32 33 7.671302 TCTCTGCAGTATTTTCTTTAGACAGT 58.329 34.615 14.67 0.00 0.00 3.55
33 34 8.803235 TCTCTGCAGTATTTTCTTTAGACAGTA 58.197 33.333 14.67 0.00 0.00 2.74
34 35 9.593134 CTCTGCAGTATTTTCTTTAGACAGTAT 57.407 33.333 14.67 0.00 0.00 2.12
91 92 6.872628 ATGTGATATGCGATCATTCTGTTT 57.127 33.333 4.58 0.00 34.22 2.83
92 93 6.051646 TGTGATATGCGATCATTCTGTTTG 57.948 37.500 4.58 0.00 34.22 2.93
499 507 8.783660 TGGTACTATCTTATTCCTGATCAACT 57.216 34.615 0.00 0.00 0.00 3.16
530 538 0.395586 TGGTTGCTGCTTTGGTGAGT 60.396 50.000 0.00 0.00 0.00 3.41
659 668 6.097554 TGGCATGAAAGAAACTGGAGTAAAAA 59.902 34.615 0.00 0.00 0.00 1.94
661 670 7.657354 GGCATGAAAGAAACTGGAGTAAAAATT 59.343 33.333 0.00 0.00 0.00 1.82
662 671 8.703336 GCATGAAAGAAACTGGAGTAAAAATTC 58.297 33.333 0.00 0.00 0.00 2.17
669 678 9.599866 AGAAACTGGAGTAAAAATTCCTTTTTG 57.400 29.630 6.37 0.00 42.89 2.44
670 679 7.786178 AACTGGAGTAAAAATTCCTTTTTGC 57.214 32.000 6.37 5.26 42.89 3.68
755 765 2.069273 CAGAGGTAAGCAAGTGGAACG 58.931 52.381 0.00 0.00 45.86 3.95
828 841 3.772025 ACAAGAGGAGAAAGATCATCGGT 59.228 43.478 0.00 0.00 35.22 4.69
844 857 2.706890 TCGGTTCAGCCTATGTTTTCC 58.293 47.619 0.00 0.00 34.25 3.13
845 858 2.304761 TCGGTTCAGCCTATGTTTTCCT 59.695 45.455 0.00 0.00 34.25 3.36
847 860 2.678336 GGTTCAGCCTATGTTTTCCTCG 59.322 50.000 0.00 0.00 0.00 4.63
930 943 1.230324 GACCACAGCTGAAACCTCAC 58.770 55.000 23.35 0.00 0.00 3.51
945 966 2.371841 ACCTCACTGCCATTGTTAGACA 59.628 45.455 0.00 0.00 0.00 3.41
995 1018 3.753272 GTGTTTATCTGAGCTTTGCAGGA 59.247 43.478 1.42 0.00 34.20 3.86
996 1019 3.753272 TGTTTATCTGAGCTTTGCAGGAC 59.247 43.478 1.42 0.00 34.20 3.85
997 1020 3.701205 TTATCTGAGCTTTGCAGGACA 57.299 42.857 1.42 0.00 34.20 4.02
998 1021 2.803030 ATCTGAGCTTTGCAGGACAT 57.197 45.000 1.42 0.00 34.20 3.06
1017 1040 3.728990 ACATCATGGGTGGGAGGAATATT 59.271 43.478 0.00 0.00 0.00 1.28
1107 1130 1.594293 CGGTGACCAACTCGTGCTT 60.594 57.895 1.11 0.00 0.00 3.91
1216 1246 4.100707 TCTCGTTTACCGTGTATTGGAG 57.899 45.455 0.00 0.00 37.94 3.86
1310 1340 2.347661 CGAACTGACGAACAAAGTCTGC 60.348 50.000 0.00 0.00 39.96 4.26
1336 1366 4.393062 GTCTGTGTTCTCCATTGTGGTATG 59.607 45.833 0.00 0.00 39.03 2.39
1405 1443 3.269643 TCATCCCTCTGGTAGAGTTCTCA 59.730 47.826 5.24 0.00 40.72 3.27
1432 1470 2.028476 CCATGTCACCAAGAAGTACGGA 60.028 50.000 0.00 0.00 0.00 4.69
1437 1475 2.696707 TCACCAAGAAGTACGGACTGTT 59.303 45.455 0.00 0.00 35.52 3.16
1438 1476 2.800544 CACCAAGAAGTACGGACTGTTG 59.199 50.000 0.00 8.66 35.52 3.33
1566 1607 6.240894 ACTCCTGATCAAATTTCTGTGCTAA 58.759 36.000 0.00 0.00 0.00 3.09
1584 1632 5.049129 GTGCTAAATATTGATCCTGTCTGCC 60.049 44.000 0.00 0.00 0.00 4.85
1587 1635 2.890808 TATTGATCCTGTCTGCCGAC 57.109 50.000 0.64 0.64 40.64 4.79
1589 1637 1.847328 TTGATCCTGTCTGCCGACTA 58.153 50.000 9.79 0.00 40.86 2.59
1596 1644 2.093973 CCTGTCTGCCGACTATCTTGTT 60.094 50.000 9.79 0.00 40.86 2.83
1598 1646 2.271800 GTCTGCCGACTATCTTGTTGG 58.728 52.381 0.37 0.00 42.88 3.77
1627 1675 1.069022 CGTGATTTGCAGGTTGAGGTG 60.069 52.381 0.00 0.00 0.00 4.00
1629 1677 3.146066 GTGATTTGCAGGTTGAGGTGTA 58.854 45.455 0.00 0.00 0.00 2.90
1748 1796 2.430694 ACGCTCAAGAGGTATGCATACA 59.569 45.455 32.19 14.12 34.98 2.29
1774 1874 0.948623 TTCAGCATGTTCGGTCCGTG 60.949 55.000 11.88 2.98 37.40 4.94
1803 1903 2.472695 TACCTGCAATTTGTCGAGCT 57.527 45.000 0.00 0.00 0.00 4.09
1817 1917 2.434884 AGCTTGCGGTCGATGGTG 60.435 61.111 0.00 0.00 0.00 4.17
1821 1921 1.086696 CTTGCGGTCGATGGTGAAAT 58.913 50.000 0.00 0.00 0.00 2.17
1823 1923 0.036858 TGCGGTCGATGGTGAAATCA 60.037 50.000 0.00 0.00 0.00 2.57
1845 1945 6.393171 TCATGGATATCTAACTTGATGAGCG 58.607 40.000 2.05 0.00 0.00 5.03
1846 1946 5.139435 TGGATATCTAACTTGATGAGCGG 57.861 43.478 2.05 0.00 0.00 5.52
1847 1947 4.588951 TGGATATCTAACTTGATGAGCGGT 59.411 41.667 2.05 0.00 0.00 5.68
1848 1948 5.070446 TGGATATCTAACTTGATGAGCGGTT 59.930 40.000 2.05 0.00 0.00 4.44
1849 1949 5.635700 GGATATCTAACTTGATGAGCGGTTC 59.364 44.000 2.05 0.00 0.00 3.62
1851 1951 2.832129 TCTAACTTGATGAGCGGTTCCT 59.168 45.455 0.00 0.00 0.00 3.36
1853 1953 2.568623 ACTTGATGAGCGGTTCCTTT 57.431 45.000 0.00 0.00 0.00 3.11
1854 1954 2.154462 ACTTGATGAGCGGTTCCTTTG 58.846 47.619 0.00 0.00 0.00 2.77
1933 2059 2.431539 CGTGAGCACCTACGTTGTC 58.568 57.895 0.00 0.00 35.70 3.18
1975 2101 2.494059 ACGGTTGTGAAGGAGAACATG 58.506 47.619 0.00 0.00 29.09 3.21
1976 2102 2.158813 ACGGTTGTGAAGGAGAACATGT 60.159 45.455 0.00 0.00 29.09 3.21
1977 2103 3.070446 ACGGTTGTGAAGGAGAACATGTA 59.930 43.478 0.00 0.00 29.09 2.29
1978 2104 3.679980 CGGTTGTGAAGGAGAACATGTAG 59.320 47.826 0.00 0.00 29.09 2.74
1979 2105 4.003648 GGTTGTGAAGGAGAACATGTAGG 58.996 47.826 0.00 0.00 29.09 3.18
1980 2106 3.334583 TGTGAAGGAGAACATGTAGGC 57.665 47.619 0.00 0.00 0.00 3.93
1984 2110 3.119245 TGAAGGAGAACATGTAGGCGTAC 60.119 47.826 9.63 9.63 0.00 3.67
1999 2125 0.108615 CGTACCTGCAGCTTGCTACT 60.109 55.000 8.66 0.00 45.31 2.57
2002 2128 0.617413 ACCTGCAGCTTGCTACTGAT 59.383 50.000 8.66 0.00 45.31 2.90
2006 2132 2.943690 CTGCAGCTTGCTACTGATGATT 59.056 45.455 0.00 0.00 45.31 2.57
2010 2136 5.698089 TGCAGCTTGCTACTGATGATTATAC 59.302 40.000 9.12 0.00 45.31 1.47
2011 2137 5.164012 GCAGCTTGCTACTGATGATTATACG 60.164 44.000 5.54 0.00 40.96 3.06
2012 2138 4.926238 AGCTTGCTACTGATGATTATACGC 59.074 41.667 0.00 0.00 0.00 4.42
2020 2147 2.035321 TGATGATTATACGCCGTCTGCA 59.965 45.455 0.00 0.00 41.33 4.41
2022 2149 2.198406 TGATTATACGCCGTCTGCAAC 58.802 47.619 0.00 0.00 41.33 4.17
2030 2157 1.860078 CCGTCTGCAACCTCGAAAC 59.140 57.895 0.00 0.00 0.00 2.78
2031 2158 0.878523 CCGTCTGCAACCTCGAAACA 60.879 55.000 0.00 0.00 0.00 2.83
2032 2159 0.934496 CGTCTGCAACCTCGAAACAA 59.066 50.000 0.00 0.00 0.00 2.83
2033 2160 1.070577 CGTCTGCAACCTCGAAACAAG 60.071 52.381 0.00 0.00 0.00 3.16
2034 2161 1.264288 GTCTGCAACCTCGAAACAAGG 59.736 52.381 0.00 0.00 39.96 3.61
2036 2163 1.532868 CTGCAACCTCGAAACAAGGAG 59.467 52.381 0.00 0.00 37.35 3.69
2037 2164 1.140052 TGCAACCTCGAAACAAGGAGA 59.860 47.619 0.00 0.00 37.35 3.71
2038 2165 2.224523 TGCAACCTCGAAACAAGGAGAT 60.225 45.455 0.00 0.00 37.35 2.75
2039 2166 3.007506 TGCAACCTCGAAACAAGGAGATA 59.992 43.478 0.00 0.00 37.35 1.98
2040 2167 4.000988 GCAACCTCGAAACAAGGAGATAA 58.999 43.478 0.00 0.00 37.35 1.75
2041 2168 4.636206 GCAACCTCGAAACAAGGAGATAAT 59.364 41.667 0.00 0.00 37.35 1.28
2043 2170 6.238130 GCAACCTCGAAACAAGGAGATAATAC 60.238 42.308 0.00 0.00 37.35 1.89
2044 2171 5.915175 ACCTCGAAACAAGGAGATAATACC 58.085 41.667 0.00 0.00 37.35 2.73
2045 2172 4.982916 CCTCGAAACAAGGAGATAATACCG 59.017 45.833 0.00 0.00 35.83 4.02
2046 2173 5.451520 CCTCGAAACAAGGAGATAATACCGT 60.452 44.000 0.00 0.00 35.83 4.83
2047 2174 5.585390 TCGAAACAAGGAGATAATACCGTC 58.415 41.667 0.00 0.00 0.00 4.79
2048 2175 4.743644 CGAAACAAGGAGATAATACCGTCC 59.256 45.833 0.00 0.00 0.00 4.79
2049 2176 4.317671 AACAAGGAGATAATACCGTCCG 57.682 45.455 0.00 0.00 33.99 4.79
2052 2179 0.877071 GGAGATAATACCGTCCGCGA 59.123 55.000 8.23 0.00 41.33 5.87
2053 2180 1.135746 GGAGATAATACCGTCCGCGAG 60.136 57.143 8.23 0.00 41.33 5.03
2054 2181 1.802960 GAGATAATACCGTCCGCGAGA 59.197 52.381 8.23 0.00 41.33 4.04
2055 2182 2.224606 AGATAATACCGTCCGCGAGAA 58.775 47.619 8.23 0.00 41.33 2.87
2056 2183 2.031333 AGATAATACCGTCCGCGAGAAC 60.031 50.000 8.23 1.33 41.33 3.01
2057 2184 0.027979 TAATACCGTCCGCGAGAACG 59.972 55.000 8.23 14.62 41.33 3.95
2059 2186 1.442526 ATACCGTCCGCGAGAACGAT 61.443 55.000 23.62 13.69 42.66 3.73
2060 2187 0.809636 TACCGTCCGCGAGAACGATA 60.810 55.000 23.62 12.80 42.66 2.92
2063 2190 0.578683 CGTCCGCGAGAACGATAGTA 59.421 55.000 19.25 0.00 46.39 1.82
2064 2191 1.655876 CGTCCGCGAGAACGATAGTAC 60.656 57.143 19.25 0.00 46.39 2.73
2065 2192 3.925676 CGTCCGCGAGAACGATAGTACT 61.926 54.545 19.25 0.00 46.39 2.73
2082 2213 7.201384 CGATAGTACTGTAACGTCTATGCGATA 60.201 40.741 5.39 0.00 35.59 2.92
2102 2233 5.750547 CGATAGCATGTAAGCCCATATACTG 59.249 44.000 0.00 0.00 34.23 2.74
2103 2234 4.292186 AGCATGTAAGCCCATATACTGG 57.708 45.455 0.00 0.00 45.51 4.00
2115 2246 5.949354 GCCCATATACTGGTATGGCAATAAA 59.051 40.000 13.04 0.00 46.41 1.40
2116 2247 6.127730 GCCCATATACTGGTATGGCAATAAAC 60.128 42.308 13.04 0.00 46.41 2.01
2117 2248 7.175104 CCCATATACTGGTATGGCAATAAACT 58.825 38.462 13.04 0.00 46.41 2.66
2123 2254 3.694072 TGGTATGGCAATAAACTGTGCTC 59.306 43.478 0.00 0.00 40.70 4.26
2130 2261 1.635663 ATAAACTGTGCTCGGCGTGC 61.636 55.000 25.31 25.31 0.00 5.34
2131 2262 2.980213 TAAACTGTGCTCGGCGTGCA 62.980 55.000 29.91 29.91 38.19 4.57
2136 2267 4.377708 TGCTCGGCGTGCACTCAT 62.378 61.111 29.91 0.00 35.31 2.90
2137 2268 3.857854 GCTCGGCGTGCACTCATG 61.858 66.667 26.79 3.54 0.00 3.07
2139 2270 2.029288 CTCGGCGTGCACTCATGTT 61.029 57.895 16.19 0.00 0.00 2.71
2141 2272 2.029288 CGGCGTGCACTCATGTTCT 61.029 57.895 16.19 0.00 0.00 3.01
2142 2273 1.499056 GGCGTGCACTCATGTTCTG 59.501 57.895 16.19 0.00 0.00 3.02
2143 2274 1.230635 GGCGTGCACTCATGTTCTGT 61.231 55.000 16.19 0.00 0.00 3.41
2144 2275 1.428448 GCGTGCACTCATGTTCTGTA 58.572 50.000 16.19 0.00 0.00 2.74
2145 2276 2.002586 GCGTGCACTCATGTTCTGTAT 58.997 47.619 16.19 0.00 0.00 2.29
2146 2277 2.029728 GCGTGCACTCATGTTCTGTATC 59.970 50.000 16.19 0.00 0.00 2.24
2147 2278 3.515630 CGTGCACTCATGTTCTGTATCT 58.484 45.455 16.19 0.00 0.00 1.98
2149 2280 4.201656 CGTGCACTCATGTTCTGTATCTTG 60.202 45.833 16.19 0.00 0.00 3.02
2150 2281 4.931601 GTGCACTCATGTTCTGTATCTTGA 59.068 41.667 10.32 0.00 0.00 3.02
2151 2282 5.409520 GTGCACTCATGTTCTGTATCTTGAA 59.590 40.000 10.32 0.00 0.00 2.69
2152 2283 5.997129 TGCACTCATGTTCTGTATCTTGAAA 59.003 36.000 0.00 0.00 0.00 2.69
2153 2284 6.486320 TGCACTCATGTTCTGTATCTTGAAAA 59.514 34.615 0.00 0.00 0.00 2.29
2155 2286 7.536622 GCACTCATGTTCTGTATCTTGAAAAAG 59.463 37.037 0.00 0.00 0.00 2.27
2156 2287 8.019669 CACTCATGTTCTGTATCTTGAAAAAGG 58.980 37.037 0.00 0.00 0.00 3.11
2158 2289 6.489700 TCATGTTCTGTATCTTGAAAAAGGCA 59.510 34.615 0.00 0.00 0.00 4.75
2163 2303 7.615582 TCTGTATCTTGAAAAAGGCACATAG 57.384 36.000 0.00 0.00 0.00 2.23
2168 2308 6.072112 TCTTGAAAAAGGCACATAGTTCAC 57.928 37.500 0.00 0.00 0.00 3.18
2170 2310 6.265196 TCTTGAAAAAGGCACATAGTTCACAT 59.735 34.615 0.00 0.00 0.00 3.21
2174 2317 6.594788 AAAAGGCACATAGTTCACATCAAT 57.405 33.333 0.00 0.00 0.00 2.57
2180 2323 6.094048 GGCACATAGTTCACATCAATACTGTT 59.906 38.462 0.00 0.00 0.00 3.16
2182 2325 7.148423 GCACATAGTTCACATCAATACTGTTGA 60.148 37.037 0.00 0.00 0.00 3.18
2218 2378 9.802039 TGAATGTAAAATTACCTGAAACTACCT 57.198 29.630 1.13 0.00 32.72 3.08
2221 2381 9.975218 ATGTAAAATTACCTGAAACTACCTGAT 57.025 29.630 1.13 0.00 32.72 2.90
2226 2386 4.473477 ACCTGAAACTACCTGATACTGC 57.527 45.455 0.00 0.00 0.00 4.40
2227 2387 3.119101 ACCTGAAACTACCTGATACTGCG 60.119 47.826 0.00 0.00 0.00 5.18
2228 2388 3.130516 CCTGAAACTACCTGATACTGCGA 59.869 47.826 0.00 0.00 0.00 5.10
2229 2389 4.355437 CTGAAACTACCTGATACTGCGAG 58.645 47.826 0.00 0.00 0.00 5.03
2230 2390 2.873133 AACTACCTGATACTGCGAGC 57.127 50.000 0.00 0.00 0.00 5.03
2231 2391 2.060050 ACTACCTGATACTGCGAGCT 57.940 50.000 0.00 0.00 0.00 4.09
2232 2392 2.379972 ACTACCTGATACTGCGAGCTT 58.620 47.619 0.00 0.00 0.00 3.74
2233 2393 3.552875 ACTACCTGATACTGCGAGCTTA 58.447 45.455 0.00 0.00 0.00 3.09
2234 2394 4.145807 ACTACCTGATACTGCGAGCTTAT 58.854 43.478 0.00 0.00 0.00 1.73
2235 2395 4.585162 ACTACCTGATACTGCGAGCTTATT 59.415 41.667 0.00 0.00 0.00 1.40
2236 2396 4.408182 ACCTGATACTGCGAGCTTATTT 57.592 40.909 0.00 0.00 0.00 1.40
2237 2397 4.122776 ACCTGATACTGCGAGCTTATTTG 58.877 43.478 0.00 0.00 0.00 2.32
2238 2398 4.141937 ACCTGATACTGCGAGCTTATTTGA 60.142 41.667 0.00 0.00 0.00 2.69
2239 2399 4.210120 CCTGATACTGCGAGCTTATTTGAC 59.790 45.833 0.00 0.00 0.00 3.18
2240 2400 4.754322 TGATACTGCGAGCTTATTTGACA 58.246 39.130 0.00 0.00 0.00 3.58
2241 2401 4.566759 TGATACTGCGAGCTTATTTGACAC 59.433 41.667 0.00 0.00 0.00 3.67
2242 2402 3.045601 ACTGCGAGCTTATTTGACACT 57.954 42.857 0.00 0.00 0.00 3.55
2243 2403 4.188247 ACTGCGAGCTTATTTGACACTA 57.812 40.909 0.00 0.00 0.00 2.74
2244 2404 3.927142 ACTGCGAGCTTATTTGACACTAC 59.073 43.478 0.00 0.00 0.00 2.73
2245 2405 4.177026 CTGCGAGCTTATTTGACACTACT 58.823 43.478 0.00 0.00 0.00 2.57
2246 2406 4.174009 TGCGAGCTTATTTGACACTACTC 58.826 43.478 0.00 0.00 0.00 2.59
2247 2407 3.552294 GCGAGCTTATTTGACACTACTCC 59.448 47.826 0.00 0.00 0.00 3.85
2248 2408 4.113354 CGAGCTTATTTGACACTACTCCC 58.887 47.826 0.00 0.00 0.00 4.30
2249 2409 4.142138 CGAGCTTATTTGACACTACTCCCT 60.142 45.833 0.00 0.00 0.00 4.20
2250 2410 5.346181 AGCTTATTTGACACTACTCCCTC 57.654 43.478 0.00 0.00 0.00 4.30
2251 2411 4.162509 AGCTTATTTGACACTACTCCCTCC 59.837 45.833 0.00 0.00 0.00 4.30
2252 2412 4.683832 CTTATTTGACACTACTCCCTCCG 58.316 47.826 0.00 0.00 0.00 4.63
2253 2413 2.005370 TTTGACACTACTCCCTCCGT 57.995 50.000 0.00 0.00 0.00 4.69
2254 2414 2.005370 TTGACACTACTCCCTCCGTT 57.995 50.000 0.00 0.00 0.00 4.44
2255 2415 1.542492 TGACACTACTCCCTCCGTTC 58.458 55.000 0.00 0.00 0.00 3.95
2256 2416 0.816373 GACACTACTCCCTCCGTTCC 59.184 60.000 0.00 0.00 0.00 3.62
2257 2417 0.113776 ACACTACTCCCTCCGTTCCA 59.886 55.000 0.00 0.00 0.00 3.53
2258 2418 0.531200 CACTACTCCCTCCGTTCCAC 59.469 60.000 0.00 0.00 0.00 4.02
2259 2419 0.113776 ACTACTCCCTCCGTTCCACA 59.886 55.000 0.00 0.00 0.00 4.17
2260 2420 1.263356 CTACTCCCTCCGTTCCACAA 58.737 55.000 0.00 0.00 0.00 3.33
2261 2421 1.831736 CTACTCCCTCCGTTCCACAAT 59.168 52.381 0.00 0.00 0.00 2.71
2262 2422 0.324943 ACTCCCTCCGTTCCACAATG 59.675 55.000 0.00 0.00 0.00 2.82
2263 2423 0.324943 CTCCCTCCGTTCCACAATGT 59.675 55.000 0.00 0.00 0.00 2.71
2264 2424 1.553248 CTCCCTCCGTTCCACAATGTA 59.447 52.381 0.00 0.00 0.00 2.29
2265 2425 1.553248 TCCCTCCGTTCCACAATGTAG 59.447 52.381 0.00 0.00 0.00 2.74
2266 2426 1.278127 CCCTCCGTTCCACAATGTAGT 59.722 52.381 0.00 0.00 0.00 2.73
2267 2427 2.346803 CCTCCGTTCCACAATGTAGTG 58.653 52.381 0.00 0.00 39.21 2.74
2268 2428 1.732259 CTCCGTTCCACAATGTAGTGC 59.268 52.381 0.00 0.00 38.18 4.40
2269 2429 0.442310 CCGTTCCACAATGTAGTGCG 59.558 55.000 0.00 0.00 38.18 5.34
2270 2430 1.144969 CGTTCCACAATGTAGTGCGT 58.855 50.000 0.00 0.00 38.18 5.24
2271 2431 1.126113 CGTTCCACAATGTAGTGCGTC 59.874 52.381 0.00 0.00 38.18 5.19
2272 2432 2.413837 GTTCCACAATGTAGTGCGTCT 58.586 47.619 0.00 0.00 38.18 4.18
2273 2433 2.078849 TCCACAATGTAGTGCGTCTG 57.921 50.000 0.00 0.00 38.18 3.51
2274 2434 1.343142 TCCACAATGTAGTGCGTCTGT 59.657 47.619 0.00 0.00 38.18 3.41
2275 2435 1.460743 CCACAATGTAGTGCGTCTGTG 59.539 52.381 0.00 7.99 38.18 3.66
2276 2436 1.136252 CACAATGTAGTGCGTCTGTGC 60.136 52.381 0.00 0.00 32.04 4.57
2277 2437 1.270305 ACAATGTAGTGCGTCTGTGCT 60.270 47.619 0.00 0.00 35.36 4.40
2278 2438 1.800586 CAATGTAGTGCGTCTGTGCTT 59.199 47.619 0.00 0.00 35.36 3.91
2279 2439 1.714794 ATGTAGTGCGTCTGTGCTTC 58.285 50.000 0.00 0.00 35.36 3.86
2280 2440 0.319555 TGTAGTGCGTCTGTGCTTCC 60.320 55.000 0.00 0.00 35.36 3.46
2281 2441 1.014564 GTAGTGCGTCTGTGCTTCCC 61.015 60.000 0.00 0.00 35.36 3.97
2282 2442 2.486636 TAGTGCGTCTGTGCTTCCCG 62.487 60.000 0.00 0.00 35.36 5.14
2283 2443 3.611674 TGCGTCTGTGCTTCCCGA 61.612 61.111 0.00 0.00 35.36 5.14
2284 2444 2.125512 GCGTCTGTGCTTCCCGAT 60.126 61.111 0.00 0.00 0.00 4.18
2285 2445 1.141019 GCGTCTGTGCTTCCCGATA 59.859 57.895 0.00 0.00 0.00 2.92
2286 2446 0.249489 GCGTCTGTGCTTCCCGATAT 60.249 55.000 0.00 0.00 0.00 1.63
2287 2447 1.806623 GCGTCTGTGCTTCCCGATATT 60.807 52.381 0.00 0.00 0.00 1.28
2288 2448 2.128035 CGTCTGTGCTTCCCGATATTC 58.872 52.381 0.00 0.00 0.00 1.75
2289 2449 2.481276 CGTCTGTGCTTCCCGATATTCA 60.481 50.000 0.00 0.00 0.00 2.57
2290 2450 3.531538 GTCTGTGCTTCCCGATATTCAA 58.468 45.455 0.00 0.00 0.00 2.69
2291 2451 3.557595 GTCTGTGCTTCCCGATATTCAAG 59.442 47.826 0.00 0.00 0.00 3.02
2292 2452 3.197766 TCTGTGCTTCCCGATATTCAAGT 59.802 43.478 0.00 0.00 0.00 3.16
2293 2453 3.941483 CTGTGCTTCCCGATATTCAAGTT 59.059 43.478 0.00 0.00 0.00 2.66
2294 2454 4.331968 TGTGCTTCCCGATATTCAAGTTT 58.668 39.130 0.00 0.00 0.00 2.66
2295 2455 4.155826 TGTGCTTCCCGATATTCAAGTTTG 59.844 41.667 0.00 0.00 0.00 2.93
2296 2456 4.394920 GTGCTTCCCGATATTCAAGTTTGA 59.605 41.667 0.00 0.00 34.92 2.69
2297 2457 4.394920 TGCTTCCCGATATTCAAGTTTGAC 59.605 41.667 0.00 0.00 36.83 3.18
2298 2458 4.201920 GCTTCCCGATATTCAAGTTTGACC 60.202 45.833 0.00 0.00 36.83 4.02
2299 2459 3.527533 TCCCGATATTCAAGTTTGACCG 58.472 45.455 0.00 0.00 36.83 4.79
2300 2460 3.055675 TCCCGATATTCAAGTTTGACCGT 60.056 43.478 0.00 0.00 36.83 4.83
2301 2461 4.160065 TCCCGATATTCAAGTTTGACCGTA 59.840 41.667 0.00 0.00 36.83 4.02
2302 2462 4.871557 CCCGATATTCAAGTTTGACCGTAA 59.128 41.667 0.00 0.00 36.83 3.18
2303 2463 5.352016 CCCGATATTCAAGTTTGACCGTAAA 59.648 40.000 0.00 0.00 36.83 2.01
2304 2464 6.037830 CCCGATATTCAAGTTTGACCGTAAAT 59.962 38.462 0.00 0.00 36.83 1.40
2305 2465 7.414762 CCCGATATTCAAGTTTGACCGTAAATT 60.415 37.037 0.00 0.00 36.83 1.82
2306 2466 7.966204 CCGATATTCAAGTTTGACCGTAAATTT 59.034 33.333 0.00 0.00 36.83 1.82
2307 2467 9.976255 CGATATTCAAGTTTGACCGTAAATTTA 57.024 29.630 0.00 0.00 36.83 1.40
2313 2473 9.453325 TCAAGTTTGACCGTAAATTTAATCAAC 57.547 29.630 15.32 12.11 31.01 3.18
2314 2474 8.414173 CAAGTTTGACCGTAAATTTAATCAACG 58.586 33.333 15.32 10.45 0.00 4.10
2315 2475 7.863666 AGTTTGACCGTAAATTTAATCAACGA 58.136 30.769 15.32 5.15 35.66 3.85
2316 2476 8.013378 AGTTTGACCGTAAATTTAATCAACGAG 58.987 33.333 15.32 8.06 35.66 4.18
2317 2477 7.655236 TTGACCGTAAATTTAATCAACGAGA 57.345 32.000 11.09 0.00 35.66 4.04
2318 2478 7.052565 TGACCGTAAATTTAATCAACGAGAC 57.947 36.000 11.09 4.23 35.66 3.36
2319 2479 6.091169 TGACCGTAAATTTAATCAACGAGACC 59.909 38.462 11.09 0.52 35.66 3.85
2320 2480 5.062558 ACCGTAAATTTAATCAACGAGACCG 59.937 40.000 11.09 1.83 42.50 4.79
2321 2481 5.289193 CCGTAAATTTAATCAACGAGACCGA 59.711 40.000 11.09 0.00 39.50 4.69
2322 2482 6.173724 CGTAAATTTAATCAACGAGACCGAC 58.826 40.000 4.77 0.00 39.50 4.79
2323 2483 6.034256 CGTAAATTTAATCAACGAGACCGACT 59.966 38.462 4.77 0.00 39.50 4.18
2324 2484 5.779806 AATTTAATCAACGAGACCGACTG 57.220 39.130 0.00 0.00 39.50 3.51
2325 2485 2.273370 TAATCAACGAGACCGACTGC 57.727 50.000 0.00 0.00 39.50 4.40
2326 2486 0.732880 AATCAACGAGACCGACTGCG 60.733 55.000 0.00 0.00 39.50 5.18
2347 2507 1.600023 CGGGAGCAAAAGTTGTACCA 58.400 50.000 0.00 0.00 32.60 3.25
2348 2508 1.265905 CGGGAGCAAAAGTTGTACCAC 59.734 52.381 0.00 0.00 32.60 4.16
2349 2509 2.583143 GGGAGCAAAAGTTGTACCACT 58.417 47.619 0.00 0.00 32.60 4.00
2350 2510 2.293399 GGGAGCAAAAGTTGTACCACTG 59.707 50.000 0.00 0.00 32.60 3.66
2351 2511 3.211045 GGAGCAAAAGTTGTACCACTGA 58.789 45.455 0.00 0.00 0.00 3.41
2352 2512 3.251004 GGAGCAAAAGTTGTACCACTGAG 59.749 47.826 0.00 0.00 0.00 3.35
2353 2513 3.877508 GAGCAAAAGTTGTACCACTGAGT 59.122 43.478 0.00 0.00 0.00 3.41
2354 2514 5.031066 AGCAAAAGTTGTACCACTGAGTA 57.969 39.130 0.00 0.00 0.00 2.59
2355 2515 5.433526 AGCAAAAGTTGTACCACTGAGTAA 58.566 37.500 0.00 0.00 0.00 2.24
2356 2516 5.883673 AGCAAAAGTTGTACCACTGAGTAAA 59.116 36.000 0.00 0.00 0.00 2.01
2357 2517 6.376018 AGCAAAAGTTGTACCACTGAGTAAAA 59.624 34.615 0.00 0.00 0.00 1.52
2358 2518 7.030768 GCAAAAGTTGTACCACTGAGTAAAAA 58.969 34.615 0.00 0.00 0.00 1.94
2359 2519 7.704899 GCAAAAGTTGTACCACTGAGTAAAAAT 59.295 33.333 0.00 0.00 0.00 1.82
2360 2520 9.581099 CAAAAGTTGTACCACTGAGTAAAAATT 57.419 29.630 0.00 0.00 30.97 1.82
2364 2524 8.512138 AGTTGTACCACTGAGTAAAAATTATGC 58.488 33.333 0.00 0.00 0.00 3.14
2365 2525 7.385778 TGTACCACTGAGTAAAAATTATGCC 57.614 36.000 0.00 0.00 0.00 4.40
2366 2526 6.943146 TGTACCACTGAGTAAAAATTATGCCA 59.057 34.615 0.00 0.00 0.00 4.92
2367 2527 6.267496 ACCACTGAGTAAAAATTATGCCAC 57.733 37.500 0.00 0.00 0.00 5.01
2368 2528 6.010219 ACCACTGAGTAAAAATTATGCCACT 58.990 36.000 0.00 0.00 0.00 4.00
2369 2529 6.071952 ACCACTGAGTAAAAATTATGCCACTG 60.072 38.462 0.00 0.00 0.00 3.66
2370 2530 6.150976 CCACTGAGTAAAAATTATGCCACTGA 59.849 38.462 0.00 0.00 0.00 3.41
2371 2531 7.309133 CCACTGAGTAAAAATTATGCCACTGAA 60.309 37.037 0.00 0.00 0.00 3.02
2372 2532 8.246180 CACTGAGTAAAAATTATGCCACTGAAT 58.754 33.333 0.00 0.00 0.00 2.57
2373 2533 8.806146 ACTGAGTAAAAATTATGCCACTGAATT 58.194 29.630 0.00 0.00 0.00 2.17
2374 2534 9.643693 CTGAGTAAAAATTATGCCACTGAATTT 57.356 29.630 0.00 0.00 34.94 1.82
2375 2535 9.421806 TGAGTAAAAATTATGCCACTGAATTTG 57.578 29.630 0.00 0.00 34.01 2.32
2376 2536 9.423061 GAGTAAAAATTATGCCACTGAATTTGT 57.577 29.630 0.00 0.00 34.01 2.83
2384 2544 9.941325 ATTATGCCACTGAATTTGTATTTTTGA 57.059 25.926 0.00 0.00 0.00 2.69
2385 2545 9.941325 TTATGCCACTGAATTTGTATTTTTGAT 57.059 25.926 0.00 0.00 0.00 2.57
2387 2547 8.755696 TGCCACTGAATTTGTATTTTTGATAC 57.244 30.769 0.00 0.00 0.00 2.24
2388 2548 7.540400 TGCCACTGAATTTGTATTTTTGATACG 59.460 33.333 0.00 0.00 0.00 3.06
2389 2549 7.753132 GCCACTGAATTTGTATTTTTGATACGA 59.247 33.333 0.00 0.00 0.00 3.43
2390 2550 9.787532 CCACTGAATTTGTATTTTTGATACGAT 57.212 29.630 0.00 0.00 0.00 3.73
2403 2563 6.822073 TTTGATACGATACGAATTCAGTGG 57.178 37.500 6.22 2.43 0.00 4.00
2404 2564 5.509716 TGATACGATACGAATTCAGTGGT 57.490 39.130 6.22 7.31 0.00 4.16
2405 2565 6.622833 TGATACGATACGAATTCAGTGGTA 57.377 37.500 6.22 8.90 0.00 3.25
2406 2566 7.210718 TGATACGATACGAATTCAGTGGTAT 57.789 36.000 6.22 12.26 0.00 2.73
2407 2567 8.326680 TGATACGATACGAATTCAGTGGTATA 57.673 34.615 6.22 0.00 0.00 1.47
2408 2568 8.785946 TGATACGATACGAATTCAGTGGTATAA 58.214 33.333 6.22 5.58 0.00 0.98
2409 2569 9.784680 GATACGATACGAATTCAGTGGTATAAT 57.215 33.333 6.22 1.09 0.00 1.28
2411 2571 8.882415 ACGATACGAATTCAGTGGTATAATTT 57.118 30.769 6.22 0.00 0.00 1.82
2412 2572 9.321562 ACGATACGAATTCAGTGGTATAATTTT 57.678 29.630 6.22 0.00 0.00 1.82
2415 2575 9.730420 ATACGAATTCAGTGGTATAATTTTTGC 57.270 29.630 6.22 0.00 0.00 3.68
2416 2576 7.826690 ACGAATTCAGTGGTATAATTTTTGCT 58.173 30.769 6.22 0.00 0.00 3.91
2417 2577 7.968405 ACGAATTCAGTGGTATAATTTTTGCTC 59.032 33.333 6.22 0.00 0.00 4.26
2418 2578 7.432252 CGAATTCAGTGGTATAATTTTTGCTCC 59.568 37.037 6.22 0.00 0.00 4.70
2419 2579 6.524101 TTCAGTGGTATAATTTTTGCTCCC 57.476 37.500 0.00 0.00 0.00 4.30
2420 2580 4.638421 TCAGTGGTATAATTTTTGCTCCCG 59.362 41.667 0.00 0.00 0.00 5.14
2421 2581 3.380320 AGTGGTATAATTTTTGCTCCCGC 59.620 43.478 0.00 0.00 0.00 6.13
2422 2582 2.691011 TGGTATAATTTTTGCTCCCGCC 59.309 45.455 0.00 0.00 34.43 6.13
2423 2583 2.691011 GGTATAATTTTTGCTCCCGCCA 59.309 45.455 0.00 0.00 34.43 5.69
2424 2584 2.959507 ATAATTTTTGCTCCCGCCAC 57.040 45.000 0.00 0.00 34.43 5.01
2425 2585 1.621992 TAATTTTTGCTCCCGCCACA 58.378 45.000 0.00 0.00 34.43 4.17
2426 2586 0.318120 AATTTTTGCTCCCGCCACAG 59.682 50.000 0.00 0.00 34.43 3.66
2427 2587 0.827507 ATTTTTGCTCCCGCCACAGT 60.828 50.000 0.00 0.00 34.43 3.55
2428 2588 1.040339 TTTTTGCTCCCGCCACAGTT 61.040 50.000 0.00 0.00 34.43 3.16
2429 2589 1.733402 TTTTGCTCCCGCCACAGTTG 61.733 55.000 0.00 0.00 34.43 3.16
2431 2591 4.643387 GCTCCCGCCACAGTTGGT 62.643 66.667 0.00 0.00 45.98 3.67
2432 2592 2.358737 CTCCCGCCACAGTTGGTC 60.359 66.667 0.00 0.00 45.98 4.02
2433 2593 2.847234 TCCCGCCACAGTTGGTCT 60.847 61.111 0.00 0.00 45.98 3.85
2434 2594 2.358737 CCCGCCACAGTTGGTCTC 60.359 66.667 0.00 0.00 45.98 3.36
2435 2595 2.738521 CCGCCACAGTTGGTCTCG 60.739 66.667 0.00 0.00 45.98 4.04
2436 2596 2.738521 CGCCACAGTTGGTCTCGG 60.739 66.667 0.00 0.00 45.98 4.63
2437 2597 2.426023 GCCACAGTTGGTCTCGGT 59.574 61.111 0.00 0.00 45.98 4.69
2438 2598 1.669440 GCCACAGTTGGTCTCGGTA 59.331 57.895 0.00 0.00 45.98 4.02
2439 2599 0.389948 GCCACAGTTGGTCTCGGTAG 60.390 60.000 0.00 0.00 45.98 3.18
2440 2600 0.966920 CCACAGTTGGTCTCGGTAGT 59.033 55.000 0.00 0.00 38.23 2.73
2441 2601 1.343465 CCACAGTTGGTCTCGGTAGTT 59.657 52.381 0.00 0.00 38.23 2.24
2442 2602 2.559668 CCACAGTTGGTCTCGGTAGTTA 59.440 50.000 0.00 0.00 38.23 2.24
2443 2603 3.006110 CCACAGTTGGTCTCGGTAGTTAA 59.994 47.826 0.00 0.00 38.23 2.01
2444 2604 4.501915 CCACAGTTGGTCTCGGTAGTTAAA 60.502 45.833 0.00 0.00 38.23 1.52
2445 2605 5.235516 CACAGTTGGTCTCGGTAGTTAAAT 58.764 41.667 0.00 0.00 0.00 1.40
2446 2606 5.699458 CACAGTTGGTCTCGGTAGTTAAATT 59.301 40.000 0.00 0.00 0.00 1.82
2447 2607 6.204108 CACAGTTGGTCTCGGTAGTTAAATTT 59.796 38.462 0.00 0.00 0.00 1.82
2448 2608 7.385752 CACAGTTGGTCTCGGTAGTTAAATTTA 59.614 37.037 0.00 0.00 0.00 1.40
2449 2609 8.098912 ACAGTTGGTCTCGGTAGTTAAATTTAT 58.901 33.333 0.00 0.00 0.00 1.40
2450 2610 8.388103 CAGTTGGTCTCGGTAGTTAAATTTATG 58.612 37.037 0.00 0.00 0.00 1.90
2451 2611 7.551617 AGTTGGTCTCGGTAGTTAAATTTATGG 59.448 37.037 0.00 0.00 0.00 2.74
2452 2612 6.949715 TGGTCTCGGTAGTTAAATTTATGGT 58.050 36.000 0.00 0.00 0.00 3.55
2453 2613 7.043565 TGGTCTCGGTAGTTAAATTTATGGTC 58.956 38.462 0.00 0.00 0.00 4.02
2454 2614 7.043565 GGTCTCGGTAGTTAAATTTATGGTCA 58.956 38.462 0.00 0.00 0.00 4.02
2455 2615 7.550196 GGTCTCGGTAGTTAAATTTATGGTCAA 59.450 37.037 0.00 0.00 0.00 3.18
2456 2616 8.938906 GTCTCGGTAGTTAAATTTATGGTCAAA 58.061 33.333 0.00 0.00 0.00 2.69
2457 2617 9.675464 TCTCGGTAGTTAAATTTATGGTCAAAT 57.325 29.630 0.00 0.00 0.00 2.32
2468 2628 8.931385 AATTTATGGTCAAATTTGAATCTCGG 57.069 30.769 22.07 0.00 39.21 4.63
2469 2629 4.989279 ATGGTCAAATTTGAATCTCGGG 57.011 40.909 22.07 0.00 39.21 5.14
2470 2630 4.027674 TGGTCAAATTTGAATCTCGGGA 57.972 40.909 22.07 0.00 39.21 5.14
2471 2631 4.402829 TGGTCAAATTTGAATCTCGGGAA 58.597 39.130 22.07 0.00 39.21 3.97
2472 2632 4.458989 TGGTCAAATTTGAATCTCGGGAAG 59.541 41.667 22.07 0.00 39.21 3.46
2473 2633 4.415735 GTCAAATTTGAATCTCGGGAAGC 58.584 43.478 22.07 2.16 39.21 3.86
2474 2634 3.126858 TCAAATTTGAATCTCGGGAAGCG 59.873 43.478 18.45 0.00 33.55 4.68
2475 2635 2.403252 ATTTGAATCTCGGGAAGCGT 57.597 45.000 0.00 0.00 0.00 5.07
2476 2636 1.438651 TTTGAATCTCGGGAAGCGTG 58.561 50.000 0.00 0.00 0.00 5.34
2477 2637 0.320374 TTGAATCTCGGGAAGCGTGT 59.680 50.000 0.00 0.00 0.00 4.49
2478 2638 0.389817 TGAATCTCGGGAAGCGTGTG 60.390 55.000 0.00 0.00 0.00 3.82
2479 2639 1.696832 GAATCTCGGGAAGCGTGTGC 61.697 60.000 0.00 0.00 43.24 4.57
2489 2649 4.798288 GCGTGTGCGGACTACATA 57.202 55.556 8.99 0.00 38.78 2.29
2490 2650 2.578369 GCGTGTGCGGACTACATAG 58.422 57.895 8.99 0.00 38.78 2.23
2491 2651 0.179145 GCGTGTGCGGACTACATAGT 60.179 55.000 8.99 0.00 37.68 2.12
2492 2652 1.545759 CGTGTGCGGACTACATAGTG 58.454 55.000 8.99 0.00 36.50 2.74
2493 2653 1.797713 CGTGTGCGGACTACATAGTGG 60.798 57.143 8.99 0.00 36.50 4.00
2494 2654 1.475280 GTGTGCGGACTACATAGTGGA 59.525 52.381 8.99 0.00 36.50 4.02
2495 2655 2.094390 GTGTGCGGACTACATAGTGGAA 60.094 50.000 8.99 0.00 36.50 3.53
2496 2656 2.094390 TGTGCGGACTACATAGTGGAAC 60.094 50.000 8.99 0.00 36.50 3.62
2497 2657 1.133598 TGCGGACTACATAGTGGAACG 59.866 52.381 0.00 0.00 45.86 3.95
2498 2658 1.402968 GCGGACTACATAGTGGAACGA 59.597 52.381 0.00 0.00 45.86 3.85
2499 2659 2.541178 GCGGACTACATAGTGGAACGAG 60.541 54.545 0.00 0.00 45.86 4.18
2500 2660 2.033049 CGGACTACATAGTGGAACGAGG 59.967 54.545 0.00 0.00 45.86 4.63
2501 2661 3.285484 GGACTACATAGTGGAACGAGGA 58.715 50.000 0.00 0.00 45.86 3.71
2502 2662 3.315749 GGACTACATAGTGGAACGAGGAG 59.684 52.174 0.00 0.00 45.86 3.69
2503 2663 3.288964 ACTACATAGTGGAACGAGGAGG 58.711 50.000 0.00 0.00 45.86 4.30
2504 2664 1.486211 ACATAGTGGAACGAGGAGGG 58.514 55.000 0.00 0.00 45.86 4.30
2505 2665 1.006758 ACATAGTGGAACGAGGAGGGA 59.993 52.381 0.00 0.00 45.86 4.20
2506 2666 1.683917 CATAGTGGAACGAGGAGGGAG 59.316 57.143 0.00 0.00 45.86 4.30
2507 2667 0.702902 TAGTGGAACGAGGAGGGAGT 59.297 55.000 0.00 0.00 45.86 3.85
2508 2668 0.702902 AGTGGAACGAGGAGGGAGTA 59.297 55.000 0.00 0.00 45.86 2.59
2509 2669 1.104630 GTGGAACGAGGAGGGAGTAG 58.895 60.000 0.00 0.00 0.00 2.57
2510 2670 0.702902 TGGAACGAGGAGGGAGTAGT 59.297 55.000 0.00 0.00 0.00 2.73
2511 2671 1.918262 TGGAACGAGGAGGGAGTAGTA 59.082 52.381 0.00 0.00 0.00 1.82
2512 2672 2.296792 GGAACGAGGAGGGAGTAGTAC 58.703 57.143 0.00 0.00 0.00 2.73
2513 2673 1.939255 GAACGAGGAGGGAGTAGTACG 59.061 57.143 0.00 0.00 0.00 3.67
2514 2674 0.908198 ACGAGGAGGGAGTAGTACGT 59.092 55.000 0.00 0.00 0.00 3.57
2515 2675 2.111384 ACGAGGAGGGAGTAGTACGTA 58.889 52.381 0.00 0.00 0.00 3.57
2516 2676 2.102252 ACGAGGAGGGAGTAGTACGTAG 59.898 54.545 0.00 0.00 0.00 3.51
2518 2678 3.319405 CGAGGAGGGAGTAGTACGTAGTA 59.681 52.174 6.02 6.02 45.11 1.82
2537 2697 7.094075 ACGTAGTACTGTGGATTTCAGTTCATA 60.094 37.037 5.39 0.00 42.50 2.15
2538 2698 7.432545 CGTAGTACTGTGGATTTCAGTTCATAG 59.567 40.741 5.39 0.00 42.50 2.23
2539 2699 6.109359 AGTACTGTGGATTTCAGTTCATAGC 58.891 40.000 0.00 0.00 42.50 2.97
2541 2701 5.503927 ACTGTGGATTTCAGTTCATAGCAT 58.496 37.500 0.00 0.00 42.50 3.79
2542 2702 6.653020 ACTGTGGATTTCAGTTCATAGCATA 58.347 36.000 0.00 0.00 42.50 3.14
2543 2703 6.540189 ACTGTGGATTTCAGTTCATAGCATAC 59.460 38.462 0.00 0.00 42.50 2.39
2544 2704 5.822519 TGTGGATTTCAGTTCATAGCATACC 59.177 40.000 0.00 0.00 0.00 2.73
2545 2705 5.050091 GTGGATTTCAGTTCATAGCATACCG 60.050 44.000 0.00 0.00 0.00 4.02
2546 2706 5.057149 GGATTTCAGTTCATAGCATACCGT 58.943 41.667 0.00 0.00 0.00 4.83
2547 2707 5.050091 GGATTTCAGTTCATAGCATACCGTG 60.050 44.000 0.00 0.00 0.00 4.94
2548 2708 3.452755 TCAGTTCATAGCATACCGTGG 57.547 47.619 0.00 0.00 0.00 4.94
2549 2709 2.102420 TCAGTTCATAGCATACCGTGGG 59.898 50.000 0.00 0.00 0.00 4.61
2551 2711 1.414919 GTTCATAGCATACCGTGGGGA 59.585 52.381 0.00 0.00 36.97 4.81
2552 2712 1.796017 TCATAGCATACCGTGGGGAA 58.204 50.000 0.00 0.00 36.97 3.97
2554 2714 2.038426 TCATAGCATACCGTGGGGAATG 59.962 50.000 0.00 0.00 36.97 2.67
2557 2717 0.738389 GCATACCGTGGGGAATGTTG 59.262 55.000 0.00 0.00 36.97 3.33
2558 2718 1.953311 GCATACCGTGGGGAATGTTGT 60.953 52.381 0.00 0.00 36.97 3.32
2563 2727 0.662970 CGTGGGGAATGTTGTTTGCG 60.663 55.000 0.00 0.00 0.00 4.85
2569 2733 2.545731 GGAATGTTGTTTGCGGTTTGT 58.454 42.857 0.00 0.00 0.00 2.83
2577 2741 4.481930 TGTTTGCGGTTTGTCATCTTAG 57.518 40.909 0.00 0.00 0.00 2.18
2587 2751 5.411669 GGTTTGTCATCTTAGTCGTCCATTT 59.588 40.000 0.00 0.00 0.00 2.32
2588 2752 6.592607 GGTTTGTCATCTTAGTCGTCCATTTA 59.407 38.462 0.00 0.00 0.00 1.40
2589 2753 7.412672 GGTTTGTCATCTTAGTCGTCCATTTAC 60.413 40.741 0.00 0.00 0.00 2.01
2591 2755 6.931838 TGTCATCTTAGTCGTCCATTTACTT 58.068 36.000 0.00 0.00 0.00 2.24
2592 2756 6.811665 TGTCATCTTAGTCGTCCATTTACTTG 59.188 38.462 0.00 0.00 0.00 3.16
2593 2757 7.033791 GTCATCTTAGTCGTCCATTTACTTGA 58.966 38.462 0.00 0.00 0.00 3.02
2594 2758 7.707035 GTCATCTTAGTCGTCCATTTACTTGAT 59.293 37.037 0.00 0.00 0.00 2.57
2595 2759 7.921214 TCATCTTAGTCGTCCATTTACTTGATC 59.079 37.037 0.00 0.00 0.00 2.92
2596 2760 6.263344 TCTTAGTCGTCCATTTACTTGATCG 58.737 40.000 0.00 0.00 0.00 3.69
2597 2761 3.782046 AGTCGTCCATTTACTTGATCGG 58.218 45.455 0.00 0.00 0.00 4.18
2598 2762 3.446161 AGTCGTCCATTTACTTGATCGGA 59.554 43.478 0.00 0.00 0.00 4.55
2599 2763 3.550678 GTCGTCCATTTACTTGATCGGAC 59.449 47.826 0.00 0.00 39.63 4.79
2601 2765 2.864343 GTCCATTTACTTGATCGGACGG 59.136 50.000 0.00 0.00 34.14 4.79
2602 2766 2.498481 TCCATTTACTTGATCGGACGGT 59.502 45.455 0.00 0.00 0.00 4.83
2603 2767 2.607635 CCATTTACTTGATCGGACGGTG 59.392 50.000 0.00 0.00 0.00 4.94
2604 2768 2.373540 TTTACTTGATCGGACGGTGG 57.626 50.000 0.00 0.00 0.00 4.61
2605 2769 1.548081 TTACTTGATCGGACGGTGGA 58.452 50.000 0.00 0.00 0.00 4.02
2606 2770 0.813184 TACTTGATCGGACGGTGGAC 59.187 55.000 0.00 0.00 0.00 4.02
2625 2789 3.387947 GGAACCTTCGAGCCCCGA 61.388 66.667 0.00 0.00 46.94 5.14
2641 2805 1.736586 CGATAGAGGTGCCGCTTCT 59.263 57.895 0.00 0.00 37.33 2.85
2683 2854 2.097728 GGCGGCGTTTCATTCGAC 59.902 61.111 9.37 0.00 0.00 4.20
2684 2855 2.673114 GGCGGCGTTTCATTCGACA 61.673 57.895 9.37 0.00 35.94 4.35
2693 2864 2.470983 TTCATTCGACAGCCACATGA 57.529 45.000 0.00 0.00 0.00 3.07
2694 2865 2.470983 TCATTCGACAGCCACATGAA 57.529 45.000 0.00 0.00 0.00 2.57
2695 2866 2.076100 TCATTCGACAGCCACATGAAC 58.924 47.619 0.00 0.00 0.00 3.18
2696 2867 1.078709 ATTCGACAGCCACATGAACG 58.921 50.000 0.00 0.00 0.00 3.95
2697 2868 1.565156 TTCGACAGCCACATGAACGC 61.565 55.000 0.00 0.00 0.00 4.84
2698 2869 2.476051 GACAGCCACATGAACGCG 59.524 61.111 3.53 3.53 0.00 6.01
2699 2870 3.027170 GACAGCCACATGAACGCGG 62.027 63.158 12.47 0.74 0.00 6.46
2700 2871 4.465512 CAGCCACATGAACGCGGC 62.466 66.667 12.47 1.95 45.23 6.53
2703 2874 3.361158 CCACATGAACGCGGCCAA 61.361 61.111 12.47 0.00 0.00 4.52
2704 2875 2.176546 CACATGAACGCGGCCAAG 59.823 61.111 12.47 7.39 0.00 3.61
2705 2876 2.281484 ACATGAACGCGGCCAAGT 60.281 55.556 12.47 8.09 0.00 3.16
2748 2919 3.121030 CGTCGTCGTACCGTCCCT 61.121 66.667 0.00 0.00 0.00 4.20
2851 3022 4.459089 GTGACCTGGGAGGCGCTC 62.459 72.222 7.64 2.45 39.63 5.03
2852 3023 4.704103 TGACCTGGGAGGCGCTCT 62.704 66.667 7.64 1.93 39.63 4.09
2853 3024 3.844090 GACCTGGGAGGCGCTCTC 61.844 72.222 7.64 12.39 39.63 3.20
2918 3089 4.382541 TGCTCCTCTCCCTCGCCA 62.383 66.667 0.00 0.00 0.00 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.474920 CAGTGCCATGTTAATTCTAAAGAAAAA 57.525 29.630 0.00 0.00 37.61 1.94
47 48 7.826744 TCACATATAAACTCAGTGCCATGTTAA 59.173 33.333 0.00 0.00 0.00 2.01
92 93 5.527582 CAGGCCTTGTTACATCATAGGTAAC 59.472 44.000 0.00 7.47 46.73 2.50
499 507 2.903798 CAGCAACCAAAGAAAAGCCAA 58.096 42.857 0.00 0.00 0.00 4.52
659 668 2.488891 GCAAAAGGGGGCAAAAAGGAAT 60.489 45.455 0.00 0.00 0.00 3.01
661 670 0.472044 GCAAAAGGGGGCAAAAAGGA 59.528 50.000 0.00 0.00 0.00 3.36
662 671 0.473755 AGCAAAAGGGGGCAAAAAGG 59.526 50.000 0.00 0.00 0.00 3.11
669 678 0.674581 GATGCAAAGCAAAAGGGGGC 60.675 55.000 0.00 0.00 43.62 5.80
670 679 0.686224 TGATGCAAAGCAAAAGGGGG 59.314 50.000 0.00 0.00 43.62 5.40
755 765 0.036875 CTCCCCCAGGAAACAGACAC 59.963 60.000 0.00 0.00 43.40 3.67
828 841 3.260884 AGACGAGGAAAACATAGGCTGAA 59.739 43.478 0.00 0.00 0.00 3.02
844 857 6.843676 TCGAAATACTAAACGAAAGACGAG 57.156 37.500 0.00 0.00 45.77 4.18
845 858 7.801547 ATTCGAAATACTAAACGAAAGACGA 57.198 32.000 0.00 0.00 45.20 4.20
889 902 8.607713 TGGTCAGGTCCTTAAATAGATAACAAA 58.392 33.333 0.00 0.00 0.00 2.83
945 966 3.636764 GGTTTTTGATTCCAGACCAGTGT 59.363 43.478 0.00 0.00 0.00 3.55
995 1018 1.612035 ATTCCTCCCACCCATGATGT 58.388 50.000 0.00 0.00 0.00 3.06
996 1019 4.084287 CAATATTCCTCCCACCCATGATG 58.916 47.826 0.00 0.00 0.00 3.07
997 1020 3.076484 CCAATATTCCTCCCACCCATGAT 59.924 47.826 0.00 0.00 0.00 2.45
998 1021 2.446666 CCAATATTCCTCCCACCCATGA 59.553 50.000 0.00 0.00 0.00 3.07
1017 1040 1.070758 GAGAAGTCCACAGCAACTCCA 59.929 52.381 0.00 0.00 0.00 3.86
1095 1118 2.609459 GACATGGATAAGCACGAGTTGG 59.391 50.000 0.00 0.00 0.00 3.77
1107 1130 6.157820 TCTGGTAGGAATTGTTGACATGGATA 59.842 38.462 0.00 0.00 0.00 2.59
1216 1246 5.352016 CACTCGCTATACCTATCCTACAGAC 59.648 48.000 0.00 0.00 0.00 3.51
1297 1327 2.545526 ACAGACATGCAGACTTTGTTCG 59.454 45.455 0.00 0.00 0.00 3.95
1310 1340 3.189910 CCACAATGGAGAACACAGACATG 59.810 47.826 0.00 0.00 40.96 3.21
1405 1443 0.475632 TCTTGGTGACATGGGGGTCT 60.476 55.000 0.00 0.00 42.32 3.85
1432 1470 1.071471 CTCCTTGTCCGGCAACAGT 59.929 57.895 0.00 0.00 32.90 3.55
1437 1475 1.837051 AGTGTCTCCTTGTCCGGCA 60.837 57.895 0.00 0.00 0.00 5.69
1438 1476 1.374758 CAGTGTCTCCTTGTCCGGC 60.375 63.158 0.00 0.00 0.00 6.13
1503 1541 7.543359 AATTCTGTGGATGGAAGATGAAAAA 57.457 32.000 0.00 0.00 0.00 1.94
1504 1542 7.543359 AAATTCTGTGGATGGAAGATGAAAA 57.457 32.000 0.00 0.00 0.00 2.29
1505 1543 7.015487 ACAAAATTCTGTGGATGGAAGATGAAA 59.985 33.333 0.00 0.00 0.00 2.69
1506 1544 6.494491 ACAAAATTCTGTGGATGGAAGATGAA 59.506 34.615 0.00 0.00 0.00 2.57
1507 1545 6.012113 ACAAAATTCTGTGGATGGAAGATGA 58.988 36.000 0.00 0.00 0.00 2.92
1557 1598 6.988580 CAGACAGGATCAATATTTAGCACAGA 59.011 38.462 0.00 0.00 0.00 3.41
1566 1607 3.733337 GTCGGCAGACAGGATCAATATT 58.267 45.455 12.41 0.00 46.32 1.28
1584 1632 1.659098 GTTCCGCCAACAAGATAGTCG 59.341 52.381 0.00 0.00 34.76 4.18
1587 1635 2.858344 CGTAGTTCCGCCAACAAGATAG 59.142 50.000 0.00 0.00 37.48 2.08
1589 1637 1.001633 ACGTAGTTCCGCCAACAAGAT 59.998 47.619 0.00 0.00 37.78 2.40
1596 1644 1.434555 CAAATCACGTAGTTCCGCCA 58.565 50.000 0.00 0.00 41.61 5.69
1598 1646 0.793861 TGCAAATCACGTAGTTCCGC 59.206 50.000 0.00 0.00 41.61 5.54
1601 1649 3.496884 TCAACCTGCAAATCACGTAGTTC 59.503 43.478 0.00 0.00 41.61 3.01
1627 1675 4.157289 TCGCCGTAGAATATCTTCCCATAC 59.843 45.833 0.00 0.00 31.27 2.39
1629 1677 3.056749 GTCGCCGTAGAATATCTTCCCAT 60.057 47.826 0.00 0.00 31.27 4.00
1748 1796 2.079158 CCGAACATGCTGAATCTGTGT 58.921 47.619 0.00 0.00 0.00 3.72
1774 1874 1.173913 ATTGCAGGTAAAGTTCGGCC 58.826 50.000 0.00 0.00 0.00 6.13
1803 1903 1.083489 GATTTCACCATCGACCGCAA 58.917 50.000 0.00 0.00 0.00 4.85
1821 1921 6.393171 CGCTCATCAAGTTAGATATCCATGA 58.607 40.000 0.00 0.00 0.00 3.07
1823 1923 5.247110 ACCGCTCATCAAGTTAGATATCCAT 59.753 40.000 0.00 0.00 0.00 3.41
1845 1945 3.449377 TCCCAAACAAGAACAAAGGAACC 59.551 43.478 0.00 0.00 0.00 3.62
1846 1946 4.729227 TCCCAAACAAGAACAAAGGAAC 57.271 40.909 0.00 0.00 0.00 3.62
1847 1947 5.423610 TGAATCCCAAACAAGAACAAAGGAA 59.576 36.000 0.00 0.00 0.00 3.36
1848 1948 4.959210 TGAATCCCAAACAAGAACAAAGGA 59.041 37.500 0.00 0.00 0.00 3.36
1849 1949 5.275067 TGAATCCCAAACAAGAACAAAGG 57.725 39.130 0.00 0.00 0.00 3.11
1851 1951 6.047870 CACATGAATCCCAAACAAGAACAAA 58.952 36.000 0.00 0.00 0.00 2.83
1853 1953 4.892345 TCACATGAATCCCAAACAAGAACA 59.108 37.500 0.00 0.00 0.00 3.18
1854 1954 5.222631 GTCACATGAATCCCAAACAAGAAC 58.777 41.667 0.00 0.00 0.00 3.01
1975 2101 1.084370 CAAGCTGCAGGTACGCCTAC 61.084 60.000 20.51 0.00 44.97 3.18
1976 2102 1.218047 CAAGCTGCAGGTACGCCTA 59.782 57.895 20.51 0.00 44.97 3.93
1978 2104 3.804193 GCAAGCTGCAGGTACGCC 61.804 66.667 20.51 4.12 44.26 5.68
1999 2125 2.672714 GCAGACGGCGTATAATCATCA 58.327 47.619 14.74 0.00 0.00 3.07
2011 2137 1.959226 TTTCGAGGTTGCAGACGGC 60.959 57.895 0.00 0.00 45.13 5.68
2012 2138 0.878523 TGTTTCGAGGTTGCAGACGG 60.879 55.000 0.00 0.00 0.00 4.79
2020 2147 6.346896 GGTATTATCTCCTTGTTTCGAGGTT 58.653 40.000 3.36 0.00 36.45 3.50
2022 2149 4.982916 CGGTATTATCTCCTTGTTTCGAGG 59.017 45.833 0.00 0.00 36.39 4.63
2030 2157 2.673833 GCGGACGGTATTATCTCCTTG 58.326 52.381 0.00 0.00 0.00 3.61
2031 2158 1.268899 CGCGGACGGTATTATCTCCTT 59.731 52.381 0.00 0.00 34.97 3.36
2032 2159 0.879765 CGCGGACGGTATTATCTCCT 59.120 55.000 0.00 0.00 34.97 3.69
2033 2160 0.877071 TCGCGGACGGTATTATCTCC 59.123 55.000 6.13 0.00 40.63 3.71
2034 2161 1.802960 TCTCGCGGACGGTATTATCTC 59.197 52.381 6.13 0.00 40.63 2.75
2036 2163 2.314122 GTTCTCGCGGACGGTATTATC 58.686 52.381 6.13 0.00 40.63 1.75
2037 2164 1.334419 CGTTCTCGCGGACGGTATTAT 60.334 52.381 18.23 0.00 40.63 1.28
2038 2165 0.027979 CGTTCTCGCGGACGGTATTA 59.972 55.000 18.23 0.00 40.63 0.98
2039 2166 1.226491 CGTTCTCGCGGACGGTATT 60.226 57.895 18.23 0.00 40.63 1.89
2040 2167 1.442526 ATCGTTCTCGCGGACGGTAT 61.443 55.000 22.96 12.27 40.63 2.73
2041 2168 0.809636 TATCGTTCTCGCGGACGGTA 60.810 55.000 22.96 19.45 40.63 4.02
2043 2170 1.368969 CTATCGTTCTCGCGGACGG 60.369 63.158 22.96 9.57 40.63 4.79
2044 2171 0.578683 TACTATCGTTCTCGCGGACG 59.421 55.000 19.38 19.38 42.01 4.79
2045 2172 1.596727 AGTACTATCGTTCTCGCGGAC 59.403 52.381 6.13 1.86 36.96 4.79
2046 2173 1.596260 CAGTACTATCGTTCTCGCGGA 59.404 52.381 6.13 0.00 36.96 5.54
2047 2174 1.329906 ACAGTACTATCGTTCTCGCGG 59.670 52.381 6.13 0.00 36.96 6.46
2048 2175 2.733820 ACAGTACTATCGTTCTCGCG 57.266 50.000 0.00 0.00 36.96 5.87
2049 2176 3.958767 CGTTACAGTACTATCGTTCTCGC 59.041 47.826 0.00 0.00 36.96 5.03
2052 2179 7.518052 GCATAGACGTTACAGTACTATCGTTCT 60.518 40.741 12.47 12.44 0.00 3.01
2053 2180 6.572989 GCATAGACGTTACAGTACTATCGTTC 59.427 42.308 12.47 8.03 0.00 3.95
2054 2181 6.425504 GCATAGACGTTACAGTACTATCGTT 58.574 40.000 12.47 7.59 0.00 3.85
2055 2182 5.332883 CGCATAGACGTTACAGTACTATCGT 60.333 44.000 11.52 11.52 0.00 3.73
2056 2183 5.071515 CGCATAGACGTTACAGTACTATCG 58.928 45.833 0.00 0.97 0.00 2.92
2057 2184 6.220579 TCGCATAGACGTTACAGTACTATC 57.779 41.667 0.00 0.00 0.00 2.08
2059 2186 6.128715 GCTATCGCATAGACGTTACAGTACTA 60.129 42.308 0.00 0.00 34.77 1.82
2060 2187 5.333952 GCTATCGCATAGACGTTACAGTACT 60.334 44.000 0.00 0.00 34.77 2.73
2062 2189 4.512571 TGCTATCGCATAGACGTTACAGTA 59.487 41.667 0.00 0.00 42.25 2.74
2063 2190 3.314357 TGCTATCGCATAGACGTTACAGT 59.686 43.478 0.00 0.00 42.25 3.55
2064 2191 3.885358 TGCTATCGCATAGACGTTACAG 58.115 45.455 0.00 0.00 42.25 2.74
2065 2192 3.974871 TGCTATCGCATAGACGTTACA 57.025 42.857 0.00 0.00 42.25 2.41
2082 2213 4.292186 CCAGTATATGGGCTTACATGCT 57.708 45.455 0.00 0.00 46.36 3.79
2094 2225 8.506437 CACAGTTTATTGCCATACCAGTATATG 58.494 37.037 0.00 0.00 33.10 1.78
2095 2226 7.174946 GCACAGTTTATTGCCATACCAGTATAT 59.825 37.037 0.00 0.00 32.21 0.86
2096 2227 6.485313 GCACAGTTTATTGCCATACCAGTATA 59.515 38.462 0.00 0.00 32.21 1.47
2097 2228 5.299279 GCACAGTTTATTGCCATACCAGTAT 59.701 40.000 0.00 0.00 32.21 2.12
2100 2231 3.696051 AGCACAGTTTATTGCCATACCAG 59.304 43.478 0.00 0.00 39.75 4.00
2102 2233 3.242739 CGAGCACAGTTTATTGCCATACC 60.243 47.826 0.00 0.00 39.75 2.73
2103 2234 3.242739 CCGAGCACAGTTTATTGCCATAC 60.243 47.826 0.00 0.00 39.75 2.39
2108 2239 0.521242 CGCCGAGCACAGTTTATTGC 60.521 55.000 0.00 0.00 39.16 3.56
2123 2254 2.029288 AGAACATGAGTGCACGCCG 61.029 57.895 18.33 11.48 0.00 6.46
2130 2261 8.019669 CCTTTTTCAAGATACAGAACATGAGTG 58.980 37.037 0.00 0.00 30.57 3.51
2131 2262 7.308830 GCCTTTTTCAAGATACAGAACATGAGT 60.309 37.037 0.00 0.00 30.57 3.41
2133 2264 6.489700 TGCCTTTTTCAAGATACAGAACATGA 59.510 34.615 0.00 0.00 30.57 3.07
2135 2266 6.265196 TGTGCCTTTTTCAAGATACAGAACAT 59.735 34.615 0.00 0.00 30.57 2.71
2136 2267 5.592282 TGTGCCTTTTTCAAGATACAGAACA 59.408 36.000 0.00 0.00 30.57 3.18
2137 2268 6.072112 TGTGCCTTTTTCAAGATACAGAAC 57.928 37.500 0.00 0.00 30.57 3.01
2139 2270 7.168219 ACTATGTGCCTTTTTCAAGATACAGA 58.832 34.615 0.00 0.00 32.59 3.41
2141 2272 7.446931 TGAACTATGTGCCTTTTTCAAGATACA 59.553 33.333 0.00 0.00 33.19 2.29
2142 2273 7.750903 GTGAACTATGTGCCTTTTTCAAGATAC 59.249 37.037 0.00 0.00 30.57 2.24
2143 2274 7.446931 TGTGAACTATGTGCCTTTTTCAAGATA 59.553 33.333 0.00 0.00 30.57 1.98
2144 2275 6.265196 TGTGAACTATGTGCCTTTTTCAAGAT 59.735 34.615 0.00 0.00 30.57 2.40
2145 2276 5.592282 TGTGAACTATGTGCCTTTTTCAAGA 59.408 36.000 0.00 0.00 30.57 3.02
2146 2277 5.830912 TGTGAACTATGTGCCTTTTTCAAG 58.169 37.500 0.00 0.00 0.00 3.02
2147 2278 5.843673 TGTGAACTATGTGCCTTTTTCAA 57.156 34.783 0.00 0.00 0.00 2.69
2149 2280 6.012658 TGATGTGAACTATGTGCCTTTTTC 57.987 37.500 0.00 0.00 0.00 2.29
2150 2281 6.403866 TTGATGTGAACTATGTGCCTTTTT 57.596 33.333 0.00 0.00 0.00 1.94
2151 2282 6.594788 ATTGATGTGAACTATGTGCCTTTT 57.405 33.333 0.00 0.00 0.00 2.27
2152 2283 6.886459 AGTATTGATGTGAACTATGTGCCTTT 59.114 34.615 0.00 0.00 0.00 3.11
2153 2284 6.317140 CAGTATTGATGTGAACTATGTGCCTT 59.683 38.462 0.00 0.00 0.00 4.35
2155 2286 5.586243 ACAGTATTGATGTGAACTATGTGCC 59.414 40.000 0.00 0.00 0.00 5.01
2156 2287 6.668541 ACAGTATTGATGTGAACTATGTGC 57.331 37.500 0.00 0.00 0.00 4.57
2158 2289 8.846943 TTCAACAGTATTGATGTGAACTATGT 57.153 30.769 0.00 0.00 0.00 2.29
2163 2303 7.538678 GTCCAATTCAACAGTATTGATGTGAAC 59.461 37.037 0.00 0.00 34.44 3.18
2168 2308 7.335171 TCAGAGTCCAATTCAACAGTATTGATG 59.665 37.037 0.00 0.00 34.44 3.07
2170 2310 6.768483 TCAGAGTCCAATTCAACAGTATTGA 58.232 36.000 0.00 0.00 34.44 2.57
2174 2317 6.533730 ACATTCAGAGTCCAATTCAACAGTA 58.466 36.000 0.00 0.00 0.00 2.74
2182 2325 9.533831 AGGTAATTTTACATTCAGAGTCCAATT 57.466 29.630 3.12 0.00 35.37 2.32
2217 2377 4.805719 TGTCAAATAAGCTCGCAGTATCAG 59.194 41.667 0.00 0.00 0.00 2.90
2218 2378 4.566759 GTGTCAAATAAGCTCGCAGTATCA 59.433 41.667 0.00 0.00 0.00 2.15
2219 2379 4.806247 AGTGTCAAATAAGCTCGCAGTATC 59.194 41.667 0.00 0.00 0.00 2.24
2221 2381 4.188247 AGTGTCAAATAAGCTCGCAGTA 57.812 40.909 0.00 0.00 0.00 2.74
2223 2383 4.177026 AGTAGTGTCAAATAAGCTCGCAG 58.823 43.478 0.00 0.00 0.00 5.18
2224 2384 4.174009 GAGTAGTGTCAAATAAGCTCGCA 58.826 43.478 0.00 0.00 0.00 5.10
2226 2386 4.113354 GGGAGTAGTGTCAAATAAGCTCG 58.887 47.826 0.00 0.00 0.00 5.03
2227 2387 5.346181 AGGGAGTAGTGTCAAATAAGCTC 57.654 43.478 0.00 0.00 0.00 4.09
2228 2388 4.162509 GGAGGGAGTAGTGTCAAATAAGCT 59.837 45.833 0.00 0.00 0.00 3.74
2229 2389 4.443621 GGAGGGAGTAGTGTCAAATAAGC 58.556 47.826 0.00 0.00 0.00 3.09
2230 2390 4.159879 ACGGAGGGAGTAGTGTCAAATAAG 59.840 45.833 0.00 0.00 0.00 1.73
2231 2391 4.091549 ACGGAGGGAGTAGTGTCAAATAA 58.908 43.478 0.00 0.00 0.00 1.40
2232 2392 3.705051 ACGGAGGGAGTAGTGTCAAATA 58.295 45.455 0.00 0.00 0.00 1.40
2233 2393 2.537143 ACGGAGGGAGTAGTGTCAAAT 58.463 47.619 0.00 0.00 0.00 2.32
2234 2394 2.005370 ACGGAGGGAGTAGTGTCAAA 57.995 50.000 0.00 0.00 0.00 2.69
2235 2395 1.891150 GAACGGAGGGAGTAGTGTCAA 59.109 52.381 0.00 0.00 0.00 3.18
2236 2396 1.542492 GAACGGAGGGAGTAGTGTCA 58.458 55.000 0.00 0.00 0.00 3.58
2237 2397 0.816373 GGAACGGAGGGAGTAGTGTC 59.184 60.000 0.00 0.00 0.00 3.67
2238 2398 0.113776 TGGAACGGAGGGAGTAGTGT 59.886 55.000 0.00 0.00 0.00 3.55
2239 2399 0.531200 GTGGAACGGAGGGAGTAGTG 59.469 60.000 0.00 0.00 0.00 2.74
2240 2400 0.113776 TGTGGAACGGAGGGAGTAGT 59.886 55.000 0.00 0.00 42.39 2.73
2241 2401 1.263356 TTGTGGAACGGAGGGAGTAG 58.737 55.000 0.00 0.00 42.39 2.57
2242 2402 1.553248 CATTGTGGAACGGAGGGAGTA 59.447 52.381 0.00 0.00 42.39 2.59
2243 2403 0.324943 CATTGTGGAACGGAGGGAGT 59.675 55.000 0.00 0.00 42.39 3.85
2244 2404 0.324943 ACATTGTGGAACGGAGGGAG 59.675 55.000 0.00 0.00 42.39 4.30
2245 2405 1.553248 CTACATTGTGGAACGGAGGGA 59.447 52.381 0.00 0.00 42.39 4.20
2246 2406 1.278127 ACTACATTGTGGAACGGAGGG 59.722 52.381 7.20 0.00 42.39 4.30
2247 2407 2.346803 CACTACATTGTGGAACGGAGG 58.653 52.381 7.20 0.00 42.39 4.30
2248 2408 1.732259 GCACTACATTGTGGAACGGAG 59.268 52.381 7.20 0.00 42.39 4.63
2249 2409 1.803334 GCACTACATTGTGGAACGGA 58.197 50.000 7.20 0.00 42.39 4.69
2250 2410 0.442310 CGCACTACATTGTGGAACGG 59.558 55.000 7.20 0.00 42.39 4.44
2251 2411 1.126113 GACGCACTACATTGTGGAACG 59.874 52.381 7.20 11.56 42.39 3.95
2252 2412 2.157668 CAGACGCACTACATTGTGGAAC 59.842 50.000 7.20 0.00 38.31 3.62
2253 2413 2.224185 ACAGACGCACTACATTGTGGAA 60.224 45.455 7.20 0.00 38.31 3.53
2254 2414 1.343142 ACAGACGCACTACATTGTGGA 59.657 47.619 7.20 0.00 38.31 4.02
2255 2415 1.460743 CACAGACGCACTACATTGTGG 59.539 52.381 0.00 0.00 38.31 4.17
2256 2416 1.136252 GCACAGACGCACTACATTGTG 60.136 52.381 0.00 0.00 40.62 3.33
2257 2417 1.148310 GCACAGACGCACTACATTGT 58.852 50.000 0.00 0.00 0.00 2.71
2258 2418 1.432514 AGCACAGACGCACTACATTG 58.567 50.000 0.00 0.00 0.00 2.82
2259 2419 2.069273 GAAGCACAGACGCACTACATT 58.931 47.619 0.00 0.00 0.00 2.71
2260 2420 1.673033 GGAAGCACAGACGCACTACAT 60.673 52.381 0.00 0.00 0.00 2.29
2261 2421 0.319555 GGAAGCACAGACGCACTACA 60.320 55.000 0.00 0.00 0.00 2.74
2262 2422 1.014564 GGGAAGCACAGACGCACTAC 61.015 60.000 0.00 0.00 0.00 2.73
2263 2423 1.292223 GGGAAGCACAGACGCACTA 59.708 57.895 0.00 0.00 0.00 2.74
2264 2424 2.031163 GGGAAGCACAGACGCACT 59.969 61.111 0.00 0.00 0.00 4.40
2265 2425 3.414700 CGGGAAGCACAGACGCAC 61.415 66.667 0.00 0.00 0.00 5.34
2266 2426 1.600511 TATCGGGAAGCACAGACGCA 61.601 55.000 0.00 0.00 0.00 5.24
2267 2427 0.249489 ATATCGGGAAGCACAGACGC 60.249 55.000 0.00 0.00 0.00 5.19
2268 2428 2.128035 GAATATCGGGAAGCACAGACG 58.872 52.381 0.00 0.00 0.00 4.18
2269 2429 3.179443 TGAATATCGGGAAGCACAGAC 57.821 47.619 0.00 0.00 0.00 3.51
2270 2430 3.197766 ACTTGAATATCGGGAAGCACAGA 59.802 43.478 0.00 0.00 0.00 3.41
2271 2431 3.535561 ACTTGAATATCGGGAAGCACAG 58.464 45.455 0.00 0.00 0.00 3.66
2272 2432 3.627395 ACTTGAATATCGGGAAGCACA 57.373 42.857 0.00 0.00 0.00 4.57
2273 2433 4.394920 TCAAACTTGAATATCGGGAAGCAC 59.605 41.667 0.00 0.00 33.55 4.40
2274 2434 4.394920 GTCAAACTTGAATATCGGGAAGCA 59.605 41.667 0.00 0.00 39.21 3.91
2275 2435 4.201920 GGTCAAACTTGAATATCGGGAAGC 60.202 45.833 0.00 0.00 39.21 3.86
2276 2436 4.034048 CGGTCAAACTTGAATATCGGGAAG 59.966 45.833 0.00 0.00 39.21 3.46
2277 2437 3.936453 CGGTCAAACTTGAATATCGGGAA 59.064 43.478 0.00 0.00 39.21 3.97
2278 2438 3.055675 ACGGTCAAACTTGAATATCGGGA 60.056 43.478 0.00 0.00 39.21 5.14
2279 2439 3.267483 ACGGTCAAACTTGAATATCGGG 58.733 45.455 0.00 0.00 39.21 5.14
2280 2440 6.411630 TTTACGGTCAAACTTGAATATCGG 57.588 37.500 0.00 0.00 39.21 4.18
2281 2441 8.889849 AAATTTACGGTCAAACTTGAATATCG 57.110 30.769 0.00 0.15 39.21 2.92
2287 2447 9.453325 GTTGATTAAATTTACGGTCAAACTTGA 57.547 29.630 15.77 0.00 34.20 3.02
2288 2448 8.414173 CGTTGATTAAATTTACGGTCAAACTTG 58.586 33.333 15.77 7.69 0.00 3.16
2289 2449 8.344098 TCGTTGATTAAATTTACGGTCAAACTT 58.656 29.630 15.77 0.00 33.37 2.66
2290 2450 7.863666 TCGTTGATTAAATTTACGGTCAAACT 58.136 30.769 15.77 0.00 33.37 2.66
2291 2451 8.011106 TCTCGTTGATTAAATTTACGGTCAAAC 58.989 33.333 15.77 11.49 33.37 2.93
2292 2452 8.011106 GTCTCGTTGATTAAATTTACGGTCAAA 58.989 33.333 15.77 6.49 33.37 2.69
2293 2453 7.360269 GGTCTCGTTGATTAAATTTACGGTCAA 60.360 37.037 9.79 11.25 33.37 3.18
2294 2454 6.091169 GGTCTCGTTGATTAAATTTACGGTCA 59.909 38.462 9.79 6.76 33.37 4.02
2295 2455 6.472680 GGTCTCGTTGATTAAATTTACGGTC 58.527 40.000 9.79 4.65 33.37 4.79
2296 2456 5.062558 CGGTCTCGTTGATTAAATTTACGGT 59.937 40.000 9.79 0.00 33.37 4.83
2297 2457 5.289193 TCGGTCTCGTTGATTAAATTTACGG 59.711 40.000 9.79 2.88 37.69 4.02
2298 2458 6.034256 AGTCGGTCTCGTTGATTAAATTTACG 59.966 38.462 0.00 0.61 37.69 3.18
2299 2459 7.171434 CAGTCGGTCTCGTTGATTAAATTTAC 58.829 38.462 0.00 0.00 37.69 2.01
2300 2460 6.183360 GCAGTCGGTCTCGTTGATTAAATTTA 60.183 38.462 0.00 0.00 37.69 1.40
2301 2461 5.390567 GCAGTCGGTCTCGTTGATTAAATTT 60.391 40.000 0.00 0.00 37.69 1.82
2302 2462 4.092968 GCAGTCGGTCTCGTTGATTAAATT 59.907 41.667 0.00 0.00 37.69 1.82
2303 2463 3.617263 GCAGTCGGTCTCGTTGATTAAAT 59.383 43.478 0.00 0.00 37.69 1.40
2304 2464 2.991190 GCAGTCGGTCTCGTTGATTAAA 59.009 45.455 0.00 0.00 37.69 1.52
2305 2465 2.602878 GCAGTCGGTCTCGTTGATTAA 58.397 47.619 0.00 0.00 37.69 1.40
2306 2466 1.466866 CGCAGTCGGTCTCGTTGATTA 60.467 52.381 0.00 0.00 37.69 1.75
2307 2467 0.732880 CGCAGTCGGTCTCGTTGATT 60.733 55.000 0.00 0.00 37.69 2.57
2308 2468 1.154016 CGCAGTCGGTCTCGTTGAT 60.154 57.895 0.00 0.00 37.69 2.57
2309 2469 2.254350 CGCAGTCGGTCTCGTTGA 59.746 61.111 0.00 0.00 37.69 3.18
2321 2481 4.947147 TTTTGCTCCCGCCGCAGT 62.947 61.111 0.00 0.00 38.80 4.40
2322 2482 4.107051 CTTTTGCTCCCGCCGCAG 62.107 66.667 0.00 0.00 38.80 5.18
2323 2483 4.947147 ACTTTTGCTCCCGCCGCA 62.947 61.111 0.00 0.00 35.22 5.69
2324 2484 3.670377 AACTTTTGCTCCCGCCGC 61.670 61.111 0.00 0.00 34.43 6.53
2325 2485 1.231958 TACAACTTTTGCTCCCGCCG 61.232 55.000 0.00 0.00 34.43 6.46
2326 2486 0.240145 GTACAACTTTTGCTCCCGCC 59.760 55.000 0.00 0.00 34.43 6.13
2327 2487 0.240145 GGTACAACTTTTGCTCCCGC 59.760 55.000 0.00 0.00 0.00 6.13
2328 2488 1.265905 GTGGTACAACTTTTGCTCCCG 59.734 52.381 0.00 0.00 44.16 5.14
2329 2489 2.293399 CAGTGGTACAACTTTTGCTCCC 59.707 50.000 0.00 0.00 44.16 4.30
2330 2490 3.211045 TCAGTGGTACAACTTTTGCTCC 58.789 45.455 0.00 0.00 44.16 4.70
2331 2491 3.877508 ACTCAGTGGTACAACTTTTGCTC 59.122 43.478 0.00 0.00 44.16 4.26
2332 2492 3.886123 ACTCAGTGGTACAACTTTTGCT 58.114 40.909 0.00 0.00 44.16 3.91
2333 2493 5.744666 TTACTCAGTGGTACAACTTTTGC 57.255 39.130 0.00 0.00 44.16 3.68
2334 2494 9.581099 AATTTTTACTCAGTGGTACAACTTTTG 57.419 29.630 0.00 0.00 44.16 2.44
2338 2498 8.512138 GCATAATTTTTACTCAGTGGTACAACT 58.488 33.333 0.00 0.00 44.16 3.16
2339 2499 7.753580 GGCATAATTTTTACTCAGTGGTACAAC 59.246 37.037 0.00 0.00 44.16 3.32
2340 2500 7.448777 TGGCATAATTTTTACTCAGTGGTACAA 59.551 33.333 0.00 0.00 44.16 2.41
2341 2501 6.943146 TGGCATAATTTTTACTCAGTGGTACA 59.057 34.615 0.00 0.00 0.00 2.90
2342 2502 7.120726 AGTGGCATAATTTTTACTCAGTGGTAC 59.879 37.037 0.00 0.00 0.00 3.34
2343 2503 7.120579 CAGTGGCATAATTTTTACTCAGTGGTA 59.879 37.037 0.00 0.00 0.00 3.25
2344 2504 6.010219 AGTGGCATAATTTTTACTCAGTGGT 58.990 36.000 0.00 0.00 0.00 4.16
2345 2505 6.150976 TCAGTGGCATAATTTTTACTCAGTGG 59.849 38.462 0.00 0.00 0.00 4.00
2346 2506 7.144722 TCAGTGGCATAATTTTTACTCAGTG 57.855 36.000 0.00 0.00 0.00 3.66
2347 2507 7.759489 TTCAGTGGCATAATTTTTACTCAGT 57.241 32.000 0.00 0.00 0.00 3.41
2348 2508 9.643693 AAATTCAGTGGCATAATTTTTACTCAG 57.356 29.630 10.51 0.00 30.62 3.35
2349 2509 9.421806 CAAATTCAGTGGCATAATTTTTACTCA 57.578 29.630 12.58 0.00 32.05 3.41
2350 2510 9.423061 ACAAATTCAGTGGCATAATTTTTACTC 57.577 29.630 12.58 0.00 32.05 2.59
2358 2518 9.941325 TCAAAAATACAAATTCAGTGGCATAAT 57.059 25.926 0.00 0.00 0.00 1.28
2359 2519 9.941325 ATCAAAAATACAAATTCAGTGGCATAA 57.059 25.926 0.00 0.00 0.00 1.90
2361 2521 9.369904 GTATCAAAAATACAAATTCAGTGGCAT 57.630 29.630 0.00 0.00 0.00 4.40
2362 2522 7.540400 CGTATCAAAAATACAAATTCAGTGGCA 59.460 33.333 0.00 0.00 0.00 4.92
2363 2523 7.753132 TCGTATCAAAAATACAAATTCAGTGGC 59.247 33.333 0.00 0.00 0.00 5.01
2364 2524 9.787532 ATCGTATCAAAAATACAAATTCAGTGG 57.212 29.630 0.00 0.00 0.00 4.00
2377 2537 8.335356 CCACTGAATTCGTATCGTATCAAAAAT 58.665 33.333 0.04 0.00 0.00 1.82
2378 2538 7.332430 ACCACTGAATTCGTATCGTATCAAAAA 59.668 33.333 0.04 0.00 0.00 1.94
2379 2539 6.814644 ACCACTGAATTCGTATCGTATCAAAA 59.185 34.615 0.04 0.00 0.00 2.44
2380 2540 6.334989 ACCACTGAATTCGTATCGTATCAAA 58.665 36.000 0.04 0.00 0.00 2.69
2381 2541 5.898174 ACCACTGAATTCGTATCGTATCAA 58.102 37.500 0.04 0.00 0.00 2.57
2382 2542 5.509716 ACCACTGAATTCGTATCGTATCA 57.490 39.130 0.04 0.00 0.00 2.15
2383 2543 9.784680 ATTATACCACTGAATTCGTATCGTATC 57.215 33.333 0.04 0.00 0.00 2.24
2385 2545 9.970395 AAATTATACCACTGAATTCGTATCGTA 57.030 29.630 0.04 4.50 0.00 3.43
2386 2546 8.882415 AAATTATACCACTGAATTCGTATCGT 57.118 30.769 0.04 2.71 0.00 3.73
2389 2549 9.730420 GCAAAAATTATACCACTGAATTCGTAT 57.270 29.630 0.04 5.16 0.00 3.06
2390 2550 8.952278 AGCAAAAATTATACCACTGAATTCGTA 58.048 29.630 0.04 0.00 0.00 3.43
2391 2551 7.826690 AGCAAAAATTATACCACTGAATTCGT 58.173 30.769 0.04 0.00 0.00 3.85
2392 2552 7.432252 GGAGCAAAAATTATACCACTGAATTCG 59.568 37.037 0.04 0.00 0.00 3.34
2393 2553 7.706607 GGGAGCAAAAATTATACCACTGAATTC 59.293 37.037 0.00 0.00 0.00 2.17
2394 2554 7.555965 GGGAGCAAAAATTATACCACTGAATT 58.444 34.615 0.00 0.00 0.00 2.17
2395 2555 6.183360 CGGGAGCAAAAATTATACCACTGAAT 60.183 38.462 0.00 0.00 0.00 2.57
2396 2556 5.124776 CGGGAGCAAAAATTATACCACTGAA 59.875 40.000 0.00 0.00 0.00 3.02
2397 2557 4.638421 CGGGAGCAAAAATTATACCACTGA 59.362 41.667 0.00 0.00 0.00 3.41
2398 2558 4.920376 CGGGAGCAAAAATTATACCACTG 58.080 43.478 0.00 0.00 0.00 3.66
2422 2582 2.814280 AACTACCGAGACCAACTGTG 57.186 50.000 0.00 0.00 0.00 3.66
2423 2583 4.942761 TTTAACTACCGAGACCAACTGT 57.057 40.909 0.00 0.00 0.00 3.55
2424 2584 6.796705 AAATTTAACTACCGAGACCAACTG 57.203 37.500 0.00 0.00 0.00 3.16
2425 2585 7.551617 CCATAAATTTAACTACCGAGACCAACT 59.448 37.037 1.21 0.00 0.00 3.16
2426 2586 7.335171 ACCATAAATTTAACTACCGAGACCAAC 59.665 37.037 1.21 0.00 0.00 3.77
2427 2587 7.396418 ACCATAAATTTAACTACCGAGACCAA 58.604 34.615 1.21 0.00 0.00 3.67
2428 2588 6.949715 ACCATAAATTTAACTACCGAGACCA 58.050 36.000 1.21 0.00 0.00 4.02
2429 2589 7.043565 TGACCATAAATTTAACTACCGAGACC 58.956 38.462 1.21 0.00 0.00 3.85
2430 2590 8.483307 TTGACCATAAATTTAACTACCGAGAC 57.517 34.615 1.21 0.00 0.00 3.36
2431 2591 9.675464 ATTTGACCATAAATTTAACTACCGAGA 57.325 29.630 1.21 0.00 0.00 4.04
2442 2602 9.369904 CCGAGATTCAAATTTGACCATAAATTT 57.630 29.630 20.35 5.79 45.92 1.82
2443 2603 7.981225 CCCGAGATTCAAATTTGACCATAAATT 59.019 33.333 20.35 1.32 40.84 1.82
2444 2604 7.341769 TCCCGAGATTCAAATTTGACCATAAAT 59.658 33.333 20.35 10.14 36.83 1.40
2445 2605 6.661377 TCCCGAGATTCAAATTTGACCATAAA 59.339 34.615 20.35 5.44 36.83 1.40
2446 2606 6.184068 TCCCGAGATTCAAATTTGACCATAA 58.816 36.000 20.35 6.18 36.83 1.90
2447 2607 5.750524 TCCCGAGATTCAAATTTGACCATA 58.249 37.500 20.35 6.57 36.83 2.74
2448 2608 4.599041 TCCCGAGATTCAAATTTGACCAT 58.401 39.130 20.35 12.30 36.83 3.55
2449 2609 4.027674 TCCCGAGATTCAAATTTGACCA 57.972 40.909 20.35 7.69 36.83 4.02
2450 2610 4.675408 GCTTCCCGAGATTCAAATTTGACC 60.675 45.833 20.35 14.56 36.83 4.02
2451 2611 4.415735 GCTTCCCGAGATTCAAATTTGAC 58.584 43.478 20.35 10.24 36.83 3.18
2452 2612 3.126858 CGCTTCCCGAGATTCAAATTTGA 59.873 43.478 16.91 16.91 40.02 2.69
2453 2613 3.119849 ACGCTTCCCGAGATTCAAATTTG 60.120 43.478 12.15 12.15 41.02 2.32
2454 2614 3.081804 ACGCTTCCCGAGATTCAAATTT 58.918 40.909 0.00 0.00 41.02 1.82
2455 2615 2.420022 CACGCTTCCCGAGATTCAAATT 59.580 45.455 0.00 0.00 41.02 1.82
2456 2616 2.009774 CACGCTTCCCGAGATTCAAAT 58.990 47.619 0.00 0.00 41.02 2.32
2457 2617 1.270625 ACACGCTTCCCGAGATTCAAA 60.271 47.619 0.00 0.00 41.02 2.69
2458 2618 0.320374 ACACGCTTCCCGAGATTCAA 59.680 50.000 0.00 0.00 41.02 2.69
2459 2619 0.389817 CACACGCTTCCCGAGATTCA 60.390 55.000 0.00 0.00 41.02 2.57
2460 2620 1.696832 GCACACGCTTCCCGAGATTC 61.697 60.000 0.00 0.00 41.02 2.52
2461 2621 1.741770 GCACACGCTTCCCGAGATT 60.742 57.895 0.00 0.00 41.02 2.40
2462 2622 2.125512 GCACACGCTTCCCGAGAT 60.126 61.111 0.00 0.00 41.02 2.75
2463 2623 4.717629 CGCACACGCTTCCCGAGA 62.718 66.667 0.00 0.00 41.02 4.04
2467 2627 3.291101 TAGTCCGCACACGCTTCCC 62.291 63.158 0.00 0.00 38.22 3.97
2468 2628 2.092882 GTAGTCCGCACACGCTTCC 61.093 63.158 0.00 0.00 38.22 3.46
2469 2629 0.736325 ATGTAGTCCGCACACGCTTC 60.736 55.000 0.00 0.00 38.22 3.86
2470 2630 0.528924 TATGTAGTCCGCACACGCTT 59.471 50.000 0.00 0.00 38.22 4.68
2471 2631 0.100682 CTATGTAGTCCGCACACGCT 59.899 55.000 0.00 0.00 38.22 5.07
2472 2632 0.179145 ACTATGTAGTCCGCACACGC 60.179 55.000 0.00 0.00 38.22 5.34
2473 2633 1.545759 CACTATGTAGTCCGCACACG 58.454 55.000 0.00 0.00 33.46 4.49
2474 2634 1.475280 TCCACTATGTAGTCCGCACAC 59.525 52.381 0.00 0.00 33.46 3.82
2475 2635 1.842052 TCCACTATGTAGTCCGCACA 58.158 50.000 0.00 0.00 33.46 4.57
2476 2636 2.537401 GTTCCACTATGTAGTCCGCAC 58.463 52.381 0.00 0.00 33.46 5.34
2477 2637 1.133598 CGTTCCACTATGTAGTCCGCA 59.866 52.381 0.00 0.00 33.46 5.69
2478 2638 1.402968 TCGTTCCACTATGTAGTCCGC 59.597 52.381 0.00 0.00 33.46 5.54
2479 2639 2.033049 CCTCGTTCCACTATGTAGTCCG 59.967 54.545 0.00 0.00 33.46 4.79
2480 2640 3.285484 TCCTCGTTCCACTATGTAGTCC 58.715 50.000 0.00 0.00 33.46 3.85
2481 2641 3.315749 CCTCCTCGTTCCACTATGTAGTC 59.684 52.174 0.00 0.00 33.46 2.59
2482 2642 3.288964 CCTCCTCGTTCCACTATGTAGT 58.711 50.000 0.00 0.00 36.90 2.73
2483 2643 2.623889 CCCTCCTCGTTCCACTATGTAG 59.376 54.545 0.00 0.00 0.00 2.74
2484 2644 2.242965 TCCCTCCTCGTTCCACTATGTA 59.757 50.000 0.00 0.00 0.00 2.29
2485 2645 1.006758 TCCCTCCTCGTTCCACTATGT 59.993 52.381 0.00 0.00 0.00 2.29
2486 2646 1.683917 CTCCCTCCTCGTTCCACTATG 59.316 57.143 0.00 0.00 0.00 2.23
2487 2647 1.288335 ACTCCCTCCTCGTTCCACTAT 59.712 52.381 0.00 0.00 0.00 2.12
2488 2648 0.702902 ACTCCCTCCTCGTTCCACTA 59.297 55.000 0.00 0.00 0.00 2.74
2489 2649 0.702902 TACTCCCTCCTCGTTCCACT 59.297 55.000 0.00 0.00 0.00 4.00
2490 2650 1.104630 CTACTCCCTCCTCGTTCCAC 58.895 60.000 0.00 0.00 0.00 4.02
2491 2651 0.702902 ACTACTCCCTCCTCGTTCCA 59.297 55.000 0.00 0.00 0.00 3.53
2492 2652 2.296792 GTACTACTCCCTCCTCGTTCC 58.703 57.143 0.00 0.00 0.00 3.62
2493 2653 1.939255 CGTACTACTCCCTCCTCGTTC 59.061 57.143 0.00 0.00 0.00 3.95
2494 2654 1.280421 ACGTACTACTCCCTCCTCGTT 59.720 52.381 0.00 0.00 0.00 3.85
2495 2655 0.908198 ACGTACTACTCCCTCCTCGT 59.092 55.000 0.00 0.00 0.00 4.18
2496 2656 2.102252 ACTACGTACTACTCCCTCCTCG 59.898 54.545 0.00 0.00 0.00 4.63
2497 2657 3.836365 ACTACGTACTACTCCCTCCTC 57.164 52.381 0.00 0.00 0.00 3.71
2498 2658 4.100808 CAGTACTACGTACTACTCCCTCCT 59.899 50.000 10.78 0.00 46.08 3.69
2499 2659 4.141824 ACAGTACTACGTACTACTCCCTCC 60.142 50.000 10.78 0.00 46.08 4.30
2500 2660 4.808364 CACAGTACTACGTACTACTCCCTC 59.192 50.000 10.78 0.00 46.08 4.30
2501 2661 4.383552 CCACAGTACTACGTACTACTCCCT 60.384 50.000 10.78 0.00 46.08 4.20
2502 2662 3.873952 CCACAGTACTACGTACTACTCCC 59.126 52.174 10.78 0.00 46.08 4.30
2503 2663 4.759782 TCCACAGTACTACGTACTACTCC 58.240 47.826 10.78 0.00 46.08 3.85
2504 2664 6.917217 AATCCACAGTACTACGTACTACTC 57.083 41.667 10.78 0.00 46.08 2.59
2505 2665 6.881065 TGAAATCCACAGTACTACGTACTACT 59.119 38.462 8.56 8.56 46.08 2.57
2506 2666 7.076842 TGAAATCCACAGTACTACGTACTAC 57.923 40.000 6.38 0.00 46.08 2.73
2507 2667 6.881065 ACTGAAATCCACAGTACTACGTACTA 59.119 38.462 6.38 0.00 46.08 1.82
2509 2669 5.947443 ACTGAAATCCACAGTACTACGTAC 58.053 41.667 0.00 0.00 45.10 3.67
2510 2670 6.207221 TGAACTGAAATCCACAGTACTACGTA 59.793 38.462 0.00 0.00 46.01 3.57
2511 2671 5.010314 TGAACTGAAATCCACAGTACTACGT 59.990 40.000 0.00 0.00 46.01 3.57
2512 2672 5.466819 TGAACTGAAATCCACAGTACTACG 58.533 41.667 0.00 0.00 46.01 3.51
2513 2673 7.222999 GCTATGAACTGAAATCCACAGTACTAC 59.777 40.741 0.00 0.00 46.01 2.73
2514 2674 7.093509 TGCTATGAACTGAAATCCACAGTACTA 60.094 37.037 0.00 0.00 46.01 1.82
2515 2675 6.109359 GCTATGAACTGAAATCCACAGTACT 58.891 40.000 0.00 0.00 46.01 2.73
2516 2676 5.874810 TGCTATGAACTGAAATCCACAGTAC 59.125 40.000 0.00 0.00 46.01 2.73
2517 2677 6.048732 TGCTATGAACTGAAATCCACAGTA 57.951 37.500 0.00 0.00 46.01 2.74
2519 2679 6.017605 GGTATGCTATGAACTGAAATCCACAG 60.018 42.308 0.00 0.00 40.68 3.66
2526 2686 4.188462 CCACGGTATGCTATGAACTGAAA 58.812 43.478 0.00 0.00 0.00 2.69
2528 2688 2.102420 CCCACGGTATGCTATGAACTGA 59.898 50.000 0.00 0.00 0.00 3.41
2529 2689 2.483876 CCCACGGTATGCTATGAACTG 58.516 52.381 0.00 0.00 0.00 3.16
2537 2697 0.623723 AACATTCCCCACGGTATGCT 59.376 50.000 0.00 0.00 39.85 3.79
2538 2698 0.738389 CAACATTCCCCACGGTATGC 59.262 55.000 0.00 0.00 39.85 3.14
2539 2699 2.122783 ACAACATTCCCCACGGTATG 57.877 50.000 0.00 0.00 41.49 2.39
2541 2701 2.231529 CAAACAACATTCCCCACGGTA 58.768 47.619 0.00 0.00 0.00 4.02
2542 2702 1.036707 CAAACAACATTCCCCACGGT 58.963 50.000 0.00 0.00 0.00 4.83
2543 2703 0.319469 GCAAACAACATTCCCCACGG 60.319 55.000 0.00 0.00 0.00 4.94
2544 2704 0.662970 CGCAAACAACATTCCCCACG 60.663 55.000 0.00 0.00 0.00 4.94
2545 2705 0.319469 CCGCAAACAACATTCCCCAC 60.319 55.000 0.00 0.00 0.00 4.61
2546 2706 0.757188 ACCGCAAACAACATTCCCCA 60.757 50.000 0.00 0.00 0.00 4.96
2547 2707 0.391228 AACCGCAAACAACATTCCCC 59.609 50.000 0.00 0.00 0.00 4.81
2548 2708 1.864082 CAAACCGCAAACAACATTCCC 59.136 47.619 0.00 0.00 0.00 3.97
2549 2709 2.538037 GACAAACCGCAAACAACATTCC 59.462 45.455 0.00 0.00 0.00 3.01
2551 2711 3.238108 TGACAAACCGCAAACAACATT 57.762 38.095 0.00 0.00 0.00 2.71
2552 2712 2.949451 TGACAAACCGCAAACAACAT 57.051 40.000 0.00 0.00 0.00 2.71
2554 2714 3.078594 AGATGACAAACCGCAAACAAC 57.921 42.857 0.00 0.00 0.00 3.32
2557 2717 4.464112 GACTAAGATGACAAACCGCAAAC 58.536 43.478 0.00 0.00 0.00 2.93
2558 2718 3.185594 CGACTAAGATGACAAACCGCAAA 59.814 43.478 0.00 0.00 0.00 3.68
2563 2727 3.921677 TGGACGACTAAGATGACAAACC 58.078 45.455 0.00 0.00 0.00 3.27
2569 2733 7.165460 TCAAGTAAATGGACGACTAAGATGA 57.835 36.000 0.00 0.00 0.00 2.92
2577 2741 3.550678 GTCCGATCAAGTAAATGGACGAC 59.449 47.826 0.00 0.00 36.84 4.34
2587 2751 0.813184 GTCCACCGTCCGATCAAGTA 59.187 55.000 0.00 0.00 0.00 2.24
2588 2752 1.590147 GTCCACCGTCCGATCAAGT 59.410 57.895 0.00 0.00 0.00 3.16
2589 2753 1.516386 CGTCCACCGTCCGATCAAG 60.516 63.158 0.00 0.00 0.00 3.02
2591 2755 3.445687 CCGTCCACCGTCCGATCA 61.446 66.667 0.00 0.00 33.66 2.92
2592 2756 4.203076 CCCGTCCACCGTCCGATC 62.203 72.222 0.00 0.00 33.66 3.69
2593 2757 4.746309 TCCCGTCCACCGTCCGAT 62.746 66.667 0.00 0.00 33.66 4.18
2594 2758 4.972733 TTCCCGTCCACCGTCCGA 62.973 66.667 0.00 0.00 33.66 4.55
2595 2759 4.729856 GTTCCCGTCCACCGTCCG 62.730 72.222 0.00 0.00 33.66 4.79
2596 2760 4.383861 GGTTCCCGTCCACCGTCC 62.384 72.222 0.00 0.00 33.66 4.79
2597 2761 2.776670 GAAGGTTCCCGTCCACCGTC 62.777 65.000 0.00 0.00 38.21 4.79
2598 2762 2.845795 AAGGTTCCCGTCCACCGT 60.846 61.111 0.00 0.00 38.21 4.83
2599 2763 2.047560 GAAGGTTCCCGTCCACCG 60.048 66.667 0.00 0.00 38.21 4.94
2600 2764 2.047560 CGAAGGTTCCCGTCCACC 60.048 66.667 0.00 0.00 0.00 4.61
2601 2765 1.080025 CTCGAAGGTTCCCGTCCAC 60.080 63.158 0.00 0.00 0.00 4.02
2602 2766 2.939261 GCTCGAAGGTTCCCGTCCA 61.939 63.158 0.00 0.00 0.00 4.02
2603 2767 2.125633 GCTCGAAGGTTCCCGTCC 60.126 66.667 0.00 0.00 0.00 4.79
2604 2768 2.125633 GGCTCGAAGGTTCCCGTC 60.126 66.667 0.00 0.00 0.00 4.79
2605 2769 3.703127 GGGCTCGAAGGTTCCCGT 61.703 66.667 0.00 0.00 0.00 5.28
2606 2770 4.468689 GGGGCTCGAAGGTTCCCG 62.469 72.222 0.00 0.00 39.66 5.14
2607 2771 4.468689 CGGGGCTCGAAGGTTCCC 62.469 72.222 0.00 0.00 42.43 3.97
2608 2772 3.387947 TCGGGGCTCGAAGGTTCC 61.388 66.667 7.19 0.00 45.86 3.62
2616 2780 3.043419 CACCTCTATCGGGGCTCG 58.957 66.667 0.00 0.00 40.90 5.03
2620 2784 4.301027 GCGGCACCTCTATCGGGG 62.301 72.222 0.00 0.00 0.00 5.73
2621 2785 2.701163 GAAGCGGCACCTCTATCGGG 62.701 65.000 1.45 0.00 0.00 5.14
2622 2786 1.300233 GAAGCGGCACCTCTATCGG 60.300 63.158 1.45 0.00 0.00 4.18
2623 2787 0.103208 AAGAAGCGGCACCTCTATCG 59.897 55.000 1.45 0.00 0.00 2.92
2624 2788 1.137086 TGAAGAAGCGGCACCTCTATC 59.863 52.381 1.45 3.23 0.00 2.08
2625 2789 1.134670 GTGAAGAAGCGGCACCTCTAT 60.135 52.381 1.45 0.00 0.00 1.98
2626 2790 0.246635 GTGAAGAAGCGGCACCTCTA 59.753 55.000 1.45 0.00 0.00 2.43
2627 2791 1.004440 GTGAAGAAGCGGCACCTCT 60.004 57.895 1.45 0.00 0.00 3.69
2628 2792 2.035442 GGTGAAGAAGCGGCACCTC 61.035 63.158 1.45 0.00 46.56 3.85
2629 2793 2.032681 GGTGAAGAAGCGGCACCT 59.967 61.111 1.45 0.00 46.56 4.00
2657 2821 2.624437 GAAACGCCGCCGAGGTAGAT 62.624 60.000 0.00 0.00 43.70 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.