Multiple sequence alignment - TraesCS3D01G091800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G091800 chr3D 100.000 3707 0 0 1 3707 46477860 46474154 0.000000e+00 6846
1 TraesCS3D01G091800 chr3B 93.278 2871 127 24 867 3707 72488730 72485896 0.000000e+00 4172
2 TraesCS3D01G091800 chr3B 80.870 575 47 26 1 525 72707976 72707415 9.650000e-106 394
3 TraesCS3D01G091800 chr3B 90.000 110 11 0 553 662 235854559 235854668 3.860000e-30 143
4 TraesCS3D01G091800 chr3B 77.612 268 33 17 553 819 178252312 178252071 1.800000e-28 137
5 TraesCS3D01G091800 chr3A 93.554 2777 101 28 941 3707 57896751 57894043 0.000000e+00 4065
6 TraesCS3D01G091800 chr3A 81.716 268 21 12 553 819 13912883 13912643 8.120000e-47 198
7 TraesCS3D01G091800 chr3A 95.714 70 3 0 1 70 57897198 57897129 3.030000e-21 113
8 TraesCS3D01G091800 chr2B 93.838 714 40 2 1052 1765 5489073 5488364 0.000000e+00 1072
9 TraesCS3D01G091800 chr2B 78.519 270 32 14 553 822 143270078 143270321 1.780000e-33 154
10 TraesCS3D01G091800 chr5B 92.170 728 53 2 1038 1765 562419021 562419744 0.000000e+00 1026
11 TraesCS3D01G091800 chr5B 89.286 112 12 0 551 662 485874810 485874699 1.390000e-29 141
12 TraesCS3D01G091800 chr5B 89.091 110 12 0 553 662 459491710 459491601 1.800000e-28 137
13 TraesCS3D01G091800 chr1B 89.598 721 71 2 1045 1765 493683691 493682975 0.000000e+00 913
14 TraesCS3D01G091800 chr1B 93.857 293 18 0 1473 1765 8393671 8393379 3.400000e-120 442
15 TraesCS3D01G091800 chr1B 77.698 278 34 16 542 819 625394594 625394843 1.070000e-30 145
16 TraesCS3D01G091800 chr1A 86.272 743 71 3 1038 1780 541158536 541157825 0.000000e+00 778
17 TraesCS3D01G091800 chr4A 86.137 743 75 7 1038 1780 640150234 640149520 0.000000e+00 776
18 TraesCS3D01G091800 chr4A 79.928 279 30 12 551 829 89431043 89430791 8.180000e-42 182
19 TraesCS3D01G091800 chr7B 88.163 490 55 1 1276 1765 432764249 432763763 6.900000e-162 580
20 TraesCS3D01G091800 chr7B 96.154 78 2 1 1055 1132 432764322 432764246 3.890000e-25 126
21 TraesCS3D01G091800 chr5D 80.488 287 35 10 553 819 69096395 69096680 2.260000e-47 200
22 TraesCS3D01G091800 chr5D 79.026 267 30 13 553 819 460070799 460070559 3.830000e-35 159
23 TraesCS3D01G091800 chr7A 80.242 248 39 5 554 797 532476472 532476713 1.060000e-40 178
24 TraesCS3D01G091800 chr6D 79.851 268 28 10 552 819 464536538 464536779 4.920000e-39 172
25 TraesCS3D01G091800 chr6D 87.903 124 13 2 540 662 418956974 418957096 1.070000e-30 145
26 TraesCS3D01G091800 chr4B 80.508 236 33 12 588 819 608674677 608674903 6.370000e-38 169
27 TraesCS3D01G091800 chr2D 79.401 267 29 11 553 819 568236352 568236112 8.240000e-37 165
28 TraesCS3D01G091800 chr2D 89.076 119 13 0 553 671 71386571 71386453 8.290000e-32 148
29 TraesCS3D01G091800 chr4D 83.648 159 18 5 661 819 500720299 500720149 3.860000e-30 143
30 TraesCS3D01G091800 chrUn 83.226 155 18 4 665 819 94991250 94991396 6.460000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G091800 chr3D 46474154 46477860 3706 True 6846 6846 100.0000 1 3707 1 chr3D.!!$R1 3706
1 TraesCS3D01G091800 chr3B 72485896 72488730 2834 True 4172 4172 93.2780 867 3707 1 chr3B.!!$R1 2840
2 TraesCS3D01G091800 chr3B 72707415 72707976 561 True 394 394 80.8700 1 525 1 chr3B.!!$R2 524
3 TraesCS3D01G091800 chr3A 57894043 57897198 3155 True 2089 4065 94.6340 1 3707 2 chr3A.!!$R2 3706
4 TraesCS3D01G091800 chr2B 5488364 5489073 709 True 1072 1072 93.8380 1052 1765 1 chr2B.!!$R1 713
5 TraesCS3D01G091800 chr5B 562419021 562419744 723 False 1026 1026 92.1700 1038 1765 1 chr5B.!!$F1 727
6 TraesCS3D01G091800 chr1B 493682975 493683691 716 True 913 913 89.5980 1045 1765 1 chr1B.!!$R2 720
7 TraesCS3D01G091800 chr1A 541157825 541158536 711 True 778 778 86.2720 1038 1780 1 chr1A.!!$R1 742
8 TraesCS3D01G091800 chr4A 640149520 640150234 714 True 776 776 86.1370 1038 1780 1 chr4A.!!$R2 742
9 TraesCS3D01G091800 chr7B 432763763 432764322 559 True 353 580 92.1585 1055 1765 2 chr7B.!!$R1 710

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
133 186 0.036858 TGCGGTCGATGGTGAAATCA 60.037 50.0 0.00 0.0 0.00 2.57 F
309 388 0.108615 CGTACCTGCAGCTTGCTACT 60.109 55.0 8.66 0.0 45.31 2.57 F
567 689 0.113776 ACACTACTCCCTCCGTTCCA 59.886 55.0 0.00 0.0 0.00 3.53 F
569 691 0.113776 ACTACTCCCTCCGTTCCACA 59.886 55.0 0.00 0.0 0.00 4.17 F
801 923 0.179145 GCGTGTGCGGACTACATAGT 60.179 55.0 8.99 0.0 37.68 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2059 2192 0.524862 GCCTCACTGACATTGCCTTG 59.475 55.000 0.0 0.0 0.00 3.61 R
2171 2304 0.754957 CTCCGAGCCCTCATCTGTCT 60.755 60.000 0.0 0.0 0.00 3.41 R
2368 2501 0.111061 TCAGCATCACCAACCTTGCT 59.889 50.000 0.0 0.0 45.86 3.91 R
2523 2656 0.392998 TCGGAGCCAGCAATTTCCTC 60.393 55.000 0.0 0.0 0.00 3.71 R
2707 2840 3.511540 TGCGAGATCAGGTATTATGGGAG 59.488 47.826 0.0 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 2.430694 ACGCTCAAGAGGTATGCATACA 59.569 45.455 32.19 14.12 34.98 2.29
84 137 0.948623 TTCAGCATGTTCGGTCCGTG 60.949 55.000 11.88 2.98 37.40 4.94
113 166 2.472695 TACCTGCAATTTGTCGAGCT 57.527 45.000 0.00 0.00 0.00 4.09
127 180 2.434884 AGCTTGCGGTCGATGGTG 60.435 61.111 0.00 0.00 0.00 4.17
131 184 1.086696 CTTGCGGTCGATGGTGAAAT 58.913 50.000 0.00 0.00 0.00 2.17
133 186 0.036858 TGCGGTCGATGGTGAAATCA 60.037 50.000 0.00 0.00 0.00 2.57
155 208 6.393171 TCATGGATATCTAACTTGATGAGCG 58.607 40.000 2.05 0.00 0.00 5.03
156 209 5.139435 TGGATATCTAACTTGATGAGCGG 57.861 43.478 2.05 0.00 0.00 5.52
157 210 4.588951 TGGATATCTAACTTGATGAGCGGT 59.411 41.667 2.05 0.00 0.00 5.68
158 211 5.070446 TGGATATCTAACTTGATGAGCGGTT 59.930 40.000 2.05 0.00 0.00 4.44
159 212 5.635700 GGATATCTAACTTGATGAGCGGTTC 59.364 44.000 2.05 0.00 0.00 3.62
161 214 2.832129 TCTAACTTGATGAGCGGTTCCT 59.168 45.455 0.00 0.00 0.00 3.36
163 216 2.568623 ACTTGATGAGCGGTTCCTTT 57.431 45.000 0.00 0.00 0.00 3.11
164 217 2.154462 ACTTGATGAGCGGTTCCTTTG 58.846 47.619 0.00 0.00 0.00 2.77
243 322 2.431539 CGTGAGCACCTACGTTGTC 58.568 57.895 0.00 0.00 35.70 3.18
285 364 2.494059 ACGGTTGTGAAGGAGAACATG 58.506 47.619 0.00 0.00 29.09 3.21
286 365 2.158813 ACGGTTGTGAAGGAGAACATGT 60.159 45.455 0.00 0.00 29.09 3.21
287 366 3.070446 ACGGTTGTGAAGGAGAACATGTA 59.930 43.478 0.00 0.00 29.09 2.29
288 367 3.679980 CGGTTGTGAAGGAGAACATGTAG 59.320 47.826 0.00 0.00 29.09 2.74
289 368 4.003648 GGTTGTGAAGGAGAACATGTAGG 58.996 47.826 0.00 0.00 29.09 3.18
290 369 3.334583 TGTGAAGGAGAACATGTAGGC 57.665 47.619 0.00 0.00 0.00 3.93
294 373 3.119245 TGAAGGAGAACATGTAGGCGTAC 60.119 47.826 9.63 9.63 0.00 3.67
309 388 0.108615 CGTACCTGCAGCTTGCTACT 60.109 55.000 8.66 0.00 45.31 2.57
312 391 0.617413 ACCTGCAGCTTGCTACTGAT 59.383 50.000 8.66 0.00 45.31 2.90
316 395 2.943690 CTGCAGCTTGCTACTGATGATT 59.056 45.455 0.00 0.00 45.31 2.57
320 399 5.698089 TGCAGCTTGCTACTGATGATTATAC 59.302 40.000 9.12 0.00 45.31 1.47
321 400 5.164012 GCAGCTTGCTACTGATGATTATACG 60.164 44.000 5.54 0.00 40.96 3.06
322 401 4.926238 AGCTTGCTACTGATGATTATACGC 59.074 41.667 0.00 0.00 0.00 4.42
330 410 2.035321 TGATGATTATACGCCGTCTGCA 59.965 45.455 0.00 0.00 41.33 4.41
332 412 2.198406 TGATTATACGCCGTCTGCAAC 58.802 47.619 0.00 0.00 41.33 4.17
342 429 0.934496 CGTCTGCAACCTCGAAACAA 59.066 50.000 0.00 0.00 0.00 2.83
344 431 1.264288 GTCTGCAACCTCGAAACAAGG 59.736 52.381 0.00 0.00 39.96 3.61
351 438 4.636206 GCAACCTCGAAACAAGGAGATAAT 59.364 41.667 0.00 0.00 37.35 1.28
352 439 5.815740 GCAACCTCGAAACAAGGAGATAATA 59.184 40.000 0.00 0.00 37.35 0.98
354 441 5.915175 ACCTCGAAACAAGGAGATAATACC 58.085 41.667 0.00 0.00 37.35 2.73
355 442 4.982916 CCTCGAAACAAGGAGATAATACCG 59.017 45.833 0.00 0.00 35.83 4.02
356 443 5.451520 CCTCGAAACAAGGAGATAATACCGT 60.452 44.000 0.00 0.00 35.83 4.83
357 444 5.585390 TCGAAACAAGGAGATAATACCGTC 58.415 41.667 0.00 0.00 0.00 4.79
358 445 4.743644 CGAAACAAGGAGATAATACCGTCC 59.256 45.833 0.00 0.00 0.00 4.79
360 447 2.035576 ACAAGGAGATAATACCGTCCGC 59.964 50.000 0.00 0.00 33.99 5.54
361 448 0.879765 AGGAGATAATACCGTCCGCG 59.120 55.000 0.00 0.00 33.99 6.46
364 451 1.802960 GAGATAATACCGTCCGCGAGA 59.197 52.381 8.23 0.00 41.33 4.04
371 458 1.368969 CCGTCCGCGAGAACGATAG 60.369 63.158 23.62 8.81 42.66 2.08
373 460 0.578683 CGTCCGCGAGAACGATAGTA 59.421 55.000 19.25 0.00 46.39 1.82
374 461 1.655876 CGTCCGCGAGAACGATAGTAC 60.656 57.143 19.25 0.00 46.39 2.73
375 462 3.925676 CGTCCGCGAGAACGATAGTACT 61.926 54.545 19.25 0.00 46.39 2.73
392 479 7.201384 CGATAGTACTGTAACGTCTATGCGATA 60.201 40.741 5.39 0.00 35.59 2.92
412 499 5.750547 CGATAGCATGTAAGCCCATATACTG 59.249 44.000 0.00 0.00 34.23 2.74
413 500 4.292186 AGCATGTAAGCCCATATACTGG 57.708 45.455 0.00 0.00 45.51 4.00
425 512 5.949354 GCCCATATACTGGTATGGCAATAAA 59.051 40.000 13.04 0.00 46.41 1.40
426 513 6.127730 GCCCATATACTGGTATGGCAATAAAC 60.128 42.308 13.04 0.00 46.41 2.01
427 514 7.175104 CCCATATACTGGTATGGCAATAAACT 58.825 38.462 13.04 0.00 46.41 2.66
433 520 3.694072 TGGTATGGCAATAAACTGTGCTC 59.306 43.478 0.00 0.00 40.70 4.26
440 527 1.635663 ATAAACTGTGCTCGGCGTGC 61.636 55.000 25.31 25.31 0.00 5.34
441 528 2.980213 TAAACTGTGCTCGGCGTGCA 62.980 55.000 29.91 29.91 38.19 4.57
450 547 1.959899 CTCGGCGTGCACTCATGTTC 61.960 60.000 16.19 0.00 0.00 3.18
457 554 3.515630 CGTGCACTCATGTTCTGTATCT 58.484 45.455 16.19 0.00 0.00 1.98
459 556 4.201656 CGTGCACTCATGTTCTGTATCTTG 60.202 45.833 16.19 0.00 0.00 3.02
460 557 4.931601 GTGCACTCATGTTCTGTATCTTGA 59.068 41.667 10.32 0.00 0.00 3.02
461 558 5.409520 GTGCACTCATGTTCTGTATCTTGAA 59.590 40.000 10.32 0.00 0.00 2.69
462 559 5.997129 TGCACTCATGTTCTGTATCTTGAAA 59.003 36.000 0.00 0.00 0.00 2.69
463 560 6.486320 TGCACTCATGTTCTGTATCTTGAAAA 59.514 34.615 0.00 0.00 0.00 2.29
464 561 7.013178 TGCACTCATGTTCTGTATCTTGAAAAA 59.987 33.333 0.00 0.00 0.00 1.94
465 562 7.536622 GCACTCATGTTCTGTATCTTGAAAAAG 59.463 37.037 0.00 0.00 0.00 2.27
469 566 6.072112 TGTTCTGTATCTTGAAAAAGGCAC 57.928 37.500 0.00 0.00 0.00 5.01
490 595 6.094048 GGCACATAGTTCACATCAATACTGTT 59.906 38.462 0.00 0.00 0.00 3.16
492 597 7.148423 GCACATAGTTCACATCAATACTGTTGA 60.148 37.037 0.00 0.00 0.00 3.18
528 650 9.802039 TGAATGTAAAATTACCTGAAACTACCT 57.198 29.630 1.13 0.00 32.72 3.08
531 653 9.975218 ATGTAAAATTACCTGAAACTACCTGAT 57.025 29.630 1.13 0.00 32.72 2.90
536 658 4.473477 ACCTGAAACTACCTGATACTGC 57.527 45.455 0.00 0.00 0.00 4.40
537 659 3.119101 ACCTGAAACTACCTGATACTGCG 60.119 47.826 0.00 0.00 0.00 5.18
538 660 3.130516 CCTGAAACTACCTGATACTGCGA 59.869 47.826 0.00 0.00 0.00 5.10
539 661 4.355437 CTGAAACTACCTGATACTGCGAG 58.645 47.826 0.00 0.00 0.00 5.03
540 662 2.873133 AACTACCTGATACTGCGAGC 57.127 50.000 0.00 0.00 0.00 5.03
541 663 2.060050 ACTACCTGATACTGCGAGCT 57.940 50.000 0.00 0.00 0.00 4.09
542 664 2.379972 ACTACCTGATACTGCGAGCTT 58.620 47.619 0.00 0.00 0.00 3.74
543 665 3.552875 ACTACCTGATACTGCGAGCTTA 58.447 45.455 0.00 0.00 0.00 3.09
544 666 4.145807 ACTACCTGATACTGCGAGCTTAT 58.854 43.478 0.00 0.00 0.00 1.73
545 667 4.585162 ACTACCTGATACTGCGAGCTTATT 59.415 41.667 0.00 0.00 0.00 1.40
546 668 4.408182 ACCTGATACTGCGAGCTTATTT 57.592 40.909 0.00 0.00 0.00 1.40
547 669 4.122776 ACCTGATACTGCGAGCTTATTTG 58.877 43.478 0.00 0.00 0.00 2.32
548 670 4.141937 ACCTGATACTGCGAGCTTATTTGA 60.142 41.667 0.00 0.00 0.00 2.69
549 671 4.210120 CCTGATACTGCGAGCTTATTTGAC 59.790 45.833 0.00 0.00 0.00 3.18
550 672 4.754322 TGATACTGCGAGCTTATTTGACA 58.246 39.130 0.00 0.00 0.00 3.58
551 673 4.566759 TGATACTGCGAGCTTATTTGACAC 59.433 41.667 0.00 0.00 0.00 3.67
552 674 3.045601 ACTGCGAGCTTATTTGACACT 57.954 42.857 0.00 0.00 0.00 3.55
553 675 4.188247 ACTGCGAGCTTATTTGACACTA 57.812 40.909 0.00 0.00 0.00 2.74
554 676 3.927142 ACTGCGAGCTTATTTGACACTAC 59.073 43.478 0.00 0.00 0.00 2.73
555 677 4.177026 CTGCGAGCTTATTTGACACTACT 58.823 43.478 0.00 0.00 0.00 2.57
556 678 4.174009 TGCGAGCTTATTTGACACTACTC 58.826 43.478 0.00 0.00 0.00 2.59
557 679 3.552294 GCGAGCTTATTTGACACTACTCC 59.448 47.826 0.00 0.00 0.00 3.85
558 680 4.113354 CGAGCTTATTTGACACTACTCCC 58.887 47.826 0.00 0.00 0.00 4.30
559 681 4.142138 CGAGCTTATTTGACACTACTCCCT 60.142 45.833 0.00 0.00 0.00 4.20
560 682 5.346181 AGCTTATTTGACACTACTCCCTC 57.654 43.478 0.00 0.00 0.00 4.30
561 683 4.162509 AGCTTATTTGACACTACTCCCTCC 59.837 45.833 0.00 0.00 0.00 4.30
562 684 4.683832 CTTATTTGACACTACTCCCTCCG 58.316 47.826 0.00 0.00 0.00 4.63
563 685 2.005370 TTTGACACTACTCCCTCCGT 57.995 50.000 0.00 0.00 0.00 4.69
564 686 2.005370 TTGACACTACTCCCTCCGTT 57.995 50.000 0.00 0.00 0.00 4.44
565 687 1.542492 TGACACTACTCCCTCCGTTC 58.458 55.000 0.00 0.00 0.00 3.95
566 688 0.816373 GACACTACTCCCTCCGTTCC 59.184 60.000 0.00 0.00 0.00 3.62
567 689 0.113776 ACACTACTCCCTCCGTTCCA 59.886 55.000 0.00 0.00 0.00 3.53
568 690 0.531200 CACTACTCCCTCCGTTCCAC 59.469 60.000 0.00 0.00 0.00 4.02
569 691 0.113776 ACTACTCCCTCCGTTCCACA 59.886 55.000 0.00 0.00 0.00 4.17
570 692 1.263356 CTACTCCCTCCGTTCCACAA 58.737 55.000 0.00 0.00 0.00 3.33
571 693 1.831736 CTACTCCCTCCGTTCCACAAT 59.168 52.381 0.00 0.00 0.00 2.71
572 694 0.324943 ACTCCCTCCGTTCCACAATG 59.675 55.000 0.00 0.00 0.00 2.82
573 695 0.324943 CTCCCTCCGTTCCACAATGT 59.675 55.000 0.00 0.00 0.00 2.71
574 696 1.553248 CTCCCTCCGTTCCACAATGTA 59.447 52.381 0.00 0.00 0.00 2.29
575 697 1.553248 TCCCTCCGTTCCACAATGTAG 59.447 52.381 0.00 0.00 0.00 2.74
576 698 1.278127 CCCTCCGTTCCACAATGTAGT 59.722 52.381 0.00 0.00 0.00 2.73
577 699 2.346803 CCTCCGTTCCACAATGTAGTG 58.653 52.381 0.00 0.00 39.21 2.74
578 700 1.732259 CTCCGTTCCACAATGTAGTGC 59.268 52.381 0.00 0.00 38.18 4.40
579 701 0.442310 CCGTTCCACAATGTAGTGCG 59.558 55.000 0.00 0.00 38.18 5.34
580 702 1.144969 CGTTCCACAATGTAGTGCGT 58.855 50.000 0.00 0.00 38.18 5.24
581 703 1.126113 CGTTCCACAATGTAGTGCGTC 59.874 52.381 0.00 0.00 38.18 5.19
582 704 2.413837 GTTCCACAATGTAGTGCGTCT 58.586 47.619 0.00 0.00 38.18 4.18
583 705 2.078849 TCCACAATGTAGTGCGTCTG 57.921 50.000 0.00 0.00 38.18 3.51
584 706 1.343142 TCCACAATGTAGTGCGTCTGT 59.657 47.619 0.00 0.00 38.18 3.41
585 707 1.460743 CCACAATGTAGTGCGTCTGTG 59.539 52.381 0.00 7.99 38.18 3.66
586 708 1.136252 CACAATGTAGTGCGTCTGTGC 60.136 52.381 0.00 0.00 32.04 4.57
587 709 1.270305 ACAATGTAGTGCGTCTGTGCT 60.270 47.619 0.00 0.00 35.36 4.40
588 710 1.800586 CAATGTAGTGCGTCTGTGCTT 59.199 47.619 0.00 0.00 35.36 3.91
589 711 1.714794 ATGTAGTGCGTCTGTGCTTC 58.285 50.000 0.00 0.00 35.36 3.86
590 712 0.319555 TGTAGTGCGTCTGTGCTTCC 60.320 55.000 0.00 0.00 35.36 3.46
591 713 1.014564 GTAGTGCGTCTGTGCTTCCC 61.015 60.000 0.00 0.00 35.36 3.97
592 714 2.486636 TAGTGCGTCTGTGCTTCCCG 62.487 60.000 0.00 0.00 35.36 5.14
593 715 3.611674 TGCGTCTGTGCTTCCCGA 61.612 61.111 0.00 0.00 35.36 5.14
594 716 2.125512 GCGTCTGTGCTTCCCGAT 60.126 61.111 0.00 0.00 0.00 4.18
595 717 1.141019 GCGTCTGTGCTTCCCGATA 59.859 57.895 0.00 0.00 0.00 2.92
596 718 0.249489 GCGTCTGTGCTTCCCGATAT 60.249 55.000 0.00 0.00 0.00 1.63
597 719 1.806623 GCGTCTGTGCTTCCCGATATT 60.807 52.381 0.00 0.00 0.00 1.28
598 720 2.128035 CGTCTGTGCTTCCCGATATTC 58.872 52.381 0.00 0.00 0.00 1.75
599 721 2.481276 CGTCTGTGCTTCCCGATATTCA 60.481 50.000 0.00 0.00 0.00 2.57
600 722 3.531538 GTCTGTGCTTCCCGATATTCAA 58.468 45.455 0.00 0.00 0.00 2.69
601 723 3.557595 GTCTGTGCTTCCCGATATTCAAG 59.442 47.826 0.00 0.00 0.00 3.02
602 724 3.197766 TCTGTGCTTCCCGATATTCAAGT 59.802 43.478 0.00 0.00 0.00 3.16
603 725 3.941483 CTGTGCTTCCCGATATTCAAGTT 59.059 43.478 0.00 0.00 0.00 2.66
604 726 4.331968 TGTGCTTCCCGATATTCAAGTTT 58.668 39.130 0.00 0.00 0.00 2.66
605 727 4.155826 TGTGCTTCCCGATATTCAAGTTTG 59.844 41.667 0.00 0.00 0.00 2.93
606 728 4.394920 GTGCTTCCCGATATTCAAGTTTGA 59.605 41.667 0.00 0.00 34.92 2.69
607 729 4.394920 TGCTTCCCGATATTCAAGTTTGAC 59.605 41.667 0.00 0.00 36.83 3.18
608 730 4.201920 GCTTCCCGATATTCAAGTTTGACC 60.202 45.833 0.00 0.00 36.83 4.02
609 731 3.527533 TCCCGATATTCAAGTTTGACCG 58.472 45.455 0.00 0.00 36.83 4.79
610 732 3.055675 TCCCGATATTCAAGTTTGACCGT 60.056 43.478 0.00 0.00 36.83 4.83
611 733 4.160065 TCCCGATATTCAAGTTTGACCGTA 59.840 41.667 0.00 0.00 36.83 4.02
612 734 4.871557 CCCGATATTCAAGTTTGACCGTAA 59.128 41.667 0.00 0.00 36.83 3.18
613 735 5.352016 CCCGATATTCAAGTTTGACCGTAAA 59.648 40.000 0.00 0.00 36.83 2.01
614 736 6.037830 CCCGATATTCAAGTTTGACCGTAAAT 59.962 38.462 0.00 0.00 36.83 1.40
615 737 7.414762 CCCGATATTCAAGTTTGACCGTAAATT 60.415 37.037 0.00 0.00 36.83 1.82
616 738 7.966204 CCGATATTCAAGTTTGACCGTAAATTT 59.034 33.333 0.00 0.00 36.83 1.82
617 739 9.976255 CGATATTCAAGTTTGACCGTAAATTTA 57.024 29.630 0.00 0.00 36.83 1.40
623 745 9.453325 TCAAGTTTGACCGTAAATTTAATCAAC 57.547 29.630 15.32 12.11 31.01 3.18
624 746 8.414173 CAAGTTTGACCGTAAATTTAATCAACG 58.586 33.333 15.32 10.45 0.00 4.10
625 747 7.863666 AGTTTGACCGTAAATTTAATCAACGA 58.136 30.769 15.32 5.15 35.66 3.85
626 748 8.013378 AGTTTGACCGTAAATTTAATCAACGAG 58.987 33.333 15.32 8.06 35.66 4.18
627 749 7.655236 TTGACCGTAAATTTAATCAACGAGA 57.345 32.000 11.09 0.00 35.66 4.04
628 750 7.052565 TGACCGTAAATTTAATCAACGAGAC 57.947 36.000 11.09 4.23 35.66 3.36
629 751 6.091169 TGACCGTAAATTTAATCAACGAGACC 59.909 38.462 11.09 0.52 35.66 3.85
630 752 5.062558 ACCGTAAATTTAATCAACGAGACCG 59.937 40.000 11.09 1.83 42.50 4.79
631 753 5.289193 CCGTAAATTTAATCAACGAGACCGA 59.711 40.000 11.09 0.00 39.50 4.69
632 754 6.173724 CGTAAATTTAATCAACGAGACCGAC 58.826 40.000 4.77 0.00 39.50 4.79
633 755 6.034256 CGTAAATTTAATCAACGAGACCGACT 59.966 38.462 4.77 0.00 39.50 4.18
634 756 5.779806 AATTTAATCAACGAGACCGACTG 57.220 39.130 0.00 0.00 39.50 3.51
635 757 2.273370 TAATCAACGAGACCGACTGC 57.727 50.000 0.00 0.00 39.50 4.40
636 758 0.732880 AATCAACGAGACCGACTGCG 60.733 55.000 0.00 0.00 39.50 5.18
657 779 1.600023 CGGGAGCAAAAGTTGTACCA 58.400 50.000 0.00 0.00 32.60 3.25
658 780 1.265905 CGGGAGCAAAAGTTGTACCAC 59.734 52.381 0.00 0.00 32.60 4.16
659 781 2.583143 GGGAGCAAAAGTTGTACCACT 58.417 47.619 0.00 0.00 32.60 4.00
660 782 2.293399 GGGAGCAAAAGTTGTACCACTG 59.707 50.000 0.00 0.00 32.60 3.66
661 783 3.211045 GGAGCAAAAGTTGTACCACTGA 58.789 45.455 0.00 0.00 0.00 3.41
662 784 3.251004 GGAGCAAAAGTTGTACCACTGAG 59.749 47.826 0.00 0.00 0.00 3.35
663 785 3.877508 GAGCAAAAGTTGTACCACTGAGT 59.122 43.478 0.00 0.00 0.00 3.41
664 786 5.031066 AGCAAAAGTTGTACCACTGAGTA 57.969 39.130 0.00 0.00 0.00 2.59
665 787 5.433526 AGCAAAAGTTGTACCACTGAGTAA 58.566 37.500 0.00 0.00 0.00 2.24
666 788 5.883673 AGCAAAAGTTGTACCACTGAGTAAA 59.116 36.000 0.00 0.00 0.00 2.01
667 789 6.376018 AGCAAAAGTTGTACCACTGAGTAAAA 59.624 34.615 0.00 0.00 0.00 1.52
668 790 7.030768 GCAAAAGTTGTACCACTGAGTAAAAA 58.969 34.615 0.00 0.00 0.00 1.94
669 791 7.704899 GCAAAAGTTGTACCACTGAGTAAAAAT 59.295 33.333 0.00 0.00 0.00 1.82
670 792 9.581099 CAAAAGTTGTACCACTGAGTAAAAATT 57.419 29.630 0.00 0.00 30.97 1.82
674 796 8.512138 AGTTGTACCACTGAGTAAAAATTATGC 58.488 33.333 0.00 0.00 0.00 3.14
675 797 7.385778 TGTACCACTGAGTAAAAATTATGCC 57.614 36.000 0.00 0.00 0.00 4.40
676 798 6.943146 TGTACCACTGAGTAAAAATTATGCCA 59.057 34.615 0.00 0.00 0.00 4.92
677 799 6.267496 ACCACTGAGTAAAAATTATGCCAC 57.733 37.500 0.00 0.00 0.00 5.01
678 800 6.010219 ACCACTGAGTAAAAATTATGCCACT 58.990 36.000 0.00 0.00 0.00 4.00
679 801 6.071952 ACCACTGAGTAAAAATTATGCCACTG 60.072 38.462 0.00 0.00 0.00 3.66
680 802 6.150976 CCACTGAGTAAAAATTATGCCACTGA 59.849 38.462 0.00 0.00 0.00 3.41
681 803 7.309133 CCACTGAGTAAAAATTATGCCACTGAA 60.309 37.037 0.00 0.00 0.00 3.02
682 804 8.246180 CACTGAGTAAAAATTATGCCACTGAAT 58.754 33.333 0.00 0.00 0.00 2.57
683 805 8.806146 ACTGAGTAAAAATTATGCCACTGAATT 58.194 29.630 0.00 0.00 0.00 2.17
684 806 9.643693 CTGAGTAAAAATTATGCCACTGAATTT 57.356 29.630 0.00 0.00 34.94 1.82
685 807 9.421806 TGAGTAAAAATTATGCCACTGAATTTG 57.578 29.630 0.00 0.00 34.01 2.32
686 808 9.423061 GAGTAAAAATTATGCCACTGAATTTGT 57.577 29.630 0.00 0.00 34.01 2.83
694 816 9.941325 ATTATGCCACTGAATTTGTATTTTTGA 57.059 25.926 0.00 0.00 0.00 2.69
695 817 9.941325 TTATGCCACTGAATTTGTATTTTTGAT 57.059 25.926 0.00 0.00 0.00 2.57
697 819 8.755696 TGCCACTGAATTTGTATTTTTGATAC 57.244 30.769 0.00 0.00 0.00 2.24
698 820 7.540400 TGCCACTGAATTTGTATTTTTGATACG 59.460 33.333 0.00 0.00 0.00 3.06
699 821 7.753132 GCCACTGAATTTGTATTTTTGATACGA 59.247 33.333 0.00 0.00 0.00 3.43
700 822 9.787532 CCACTGAATTTGTATTTTTGATACGAT 57.212 29.630 0.00 0.00 0.00 3.73
713 835 6.822073 TTTGATACGATACGAATTCAGTGG 57.178 37.500 6.22 2.43 0.00 4.00
714 836 5.509716 TGATACGATACGAATTCAGTGGT 57.490 39.130 6.22 7.31 0.00 4.16
715 837 6.622833 TGATACGATACGAATTCAGTGGTA 57.377 37.500 6.22 8.90 0.00 3.25
716 838 7.210718 TGATACGATACGAATTCAGTGGTAT 57.789 36.000 6.22 12.26 0.00 2.73
717 839 8.326680 TGATACGATACGAATTCAGTGGTATA 57.673 34.615 6.22 0.00 0.00 1.47
718 840 8.785946 TGATACGATACGAATTCAGTGGTATAA 58.214 33.333 6.22 5.58 0.00 0.98
719 841 9.784680 GATACGATACGAATTCAGTGGTATAAT 57.215 33.333 6.22 1.09 0.00 1.28
721 843 8.882415 ACGATACGAATTCAGTGGTATAATTT 57.118 30.769 6.22 0.00 0.00 1.82
722 844 9.321562 ACGATACGAATTCAGTGGTATAATTTT 57.678 29.630 6.22 0.00 0.00 1.82
725 847 9.730420 ATACGAATTCAGTGGTATAATTTTTGC 57.270 29.630 6.22 0.00 0.00 3.68
726 848 7.826690 ACGAATTCAGTGGTATAATTTTTGCT 58.173 30.769 6.22 0.00 0.00 3.91
727 849 7.968405 ACGAATTCAGTGGTATAATTTTTGCTC 59.032 33.333 6.22 0.00 0.00 4.26
728 850 7.432252 CGAATTCAGTGGTATAATTTTTGCTCC 59.568 37.037 6.22 0.00 0.00 4.70
729 851 6.524101 TTCAGTGGTATAATTTTTGCTCCC 57.476 37.500 0.00 0.00 0.00 4.30
730 852 4.638421 TCAGTGGTATAATTTTTGCTCCCG 59.362 41.667 0.00 0.00 0.00 5.14
731 853 3.380320 AGTGGTATAATTTTTGCTCCCGC 59.620 43.478 0.00 0.00 0.00 6.13
732 854 2.691011 TGGTATAATTTTTGCTCCCGCC 59.309 45.455 0.00 0.00 34.43 6.13
733 855 2.691011 GGTATAATTTTTGCTCCCGCCA 59.309 45.455 0.00 0.00 34.43 5.69
734 856 2.959507 ATAATTTTTGCTCCCGCCAC 57.040 45.000 0.00 0.00 34.43 5.01
735 857 1.621992 TAATTTTTGCTCCCGCCACA 58.378 45.000 0.00 0.00 34.43 4.17
736 858 0.318120 AATTTTTGCTCCCGCCACAG 59.682 50.000 0.00 0.00 34.43 3.66
737 859 0.827507 ATTTTTGCTCCCGCCACAGT 60.828 50.000 0.00 0.00 34.43 3.55
738 860 1.040339 TTTTTGCTCCCGCCACAGTT 61.040 50.000 0.00 0.00 34.43 3.16
739 861 1.733402 TTTTGCTCCCGCCACAGTTG 61.733 55.000 0.00 0.00 34.43 3.16
741 863 4.643387 GCTCCCGCCACAGTTGGT 62.643 66.667 0.00 0.00 45.98 3.67
742 864 2.358737 CTCCCGCCACAGTTGGTC 60.359 66.667 0.00 0.00 45.98 4.02
743 865 2.847234 TCCCGCCACAGTTGGTCT 60.847 61.111 0.00 0.00 45.98 3.85
744 866 2.358737 CCCGCCACAGTTGGTCTC 60.359 66.667 0.00 0.00 45.98 3.36
745 867 2.738521 CCGCCACAGTTGGTCTCG 60.739 66.667 0.00 0.00 45.98 4.04
746 868 2.738521 CGCCACAGTTGGTCTCGG 60.739 66.667 0.00 0.00 45.98 4.63
747 869 2.426023 GCCACAGTTGGTCTCGGT 59.574 61.111 0.00 0.00 45.98 4.69
748 870 1.669440 GCCACAGTTGGTCTCGGTA 59.331 57.895 0.00 0.00 45.98 4.02
749 871 0.389948 GCCACAGTTGGTCTCGGTAG 60.390 60.000 0.00 0.00 45.98 3.18
750 872 0.966920 CCACAGTTGGTCTCGGTAGT 59.033 55.000 0.00 0.00 38.23 2.73
751 873 1.343465 CCACAGTTGGTCTCGGTAGTT 59.657 52.381 0.00 0.00 38.23 2.24
752 874 2.559668 CCACAGTTGGTCTCGGTAGTTA 59.440 50.000 0.00 0.00 38.23 2.24
753 875 3.006110 CCACAGTTGGTCTCGGTAGTTAA 59.994 47.826 0.00 0.00 38.23 2.01
754 876 4.501915 CCACAGTTGGTCTCGGTAGTTAAA 60.502 45.833 0.00 0.00 38.23 1.52
755 877 5.235516 CACAGTTGGTCTCGGTAGTTAAAT 58.764 41.667 0.00 0.00 0.00 1.40
756 878 5.699458 CACAGTTGGTCTCGGTAGTTAAATT 59.301 40.000 0.00 0.00 0.00 1.82
757 879 6.204108 CACAGTTGGTCTCGGTAGTTAAATTT 59.796 38.462 0.00 0.00 0.00 1.82
758 880 7.385752 CACAGTTGGTCTCGGTAGTTAAATTTA 59.614 37.037 0.00 0.00 0.00 1.40
759 881 8.098912 ACAGTTGGTCTCGGTAGTTAAATTTAT 58.901 33.333 0.00 0.00 0.00 1.40
760 882 8.388103 CAGTTGGTCTCGGTAGTTAAATTTATG 58.612 37.037 0.00 0.00 0.00 1.90
761 883 7.551617 AGTTGGTCTCGGTAGTTAAATTTATGG 59.448 37.037 0.00 0.00 0.00 2.74
762 884 6.949715 TGGTCTCGGTAGTTAAATTTATGGT 58.050 36.000 0.00 0.00 0.00 3.55
763 885 7.043565 TGGTCTCGGTAGTTAAATTTATGGTC 58.956 38.462 0.00 0.00 0.00 4.02
764 886 7.043565 GGTCTCGGTAGTTAAATTTATGGTCA 58.956 38.462 0.00 0.00 0.00 4.02
765 887 7.550196 GGTCTCGGTAGTTAAATTTATGGTCAA 59.450 37.037 0.00 0.00 0.00 3.18
766 888 8.938906 GTCTCGGTAGTTAAATTTATGGTCAAA 58.061 33.333 0.00 0.00 0.00 2.69
767 889 9.675464 TCTCGGTAGTTAAATTTATGGTCAAAT 57.325 29.630 0.00 0.00 0.00 2.32
778 900 8.931385 AATTTATGGTCAAATTTGAATCTCGG 57.069 30.769 22.07 0.00 39.21 4.63
779 901 4.989279 ATGGTCAAATTTGAATCTCGGG 57.011 40.909 22.07 0.00 39.21 5.14
780 902 4.027674 TGGTCAAATTTGAATCTCGGGA 57.972 40.909 22.07 0.00 39.21 5.14
781 903 4.402829 TGGTCAAATTTGAATCTCGGGAA 58.597 39.130 22.07 0.00 39.21 3.97
782 904 4.458989 TGGTCAAATTTGAATCTCGGGAAG 59.541 41.667 22.07 0.00 39.21 3.46
783 905 4.415735 GTCAAATTTGAATCTCGGGAAGC 58.584 43.478 22.07 2.16 39.21 3.86
784 906 3.126858 TCAAATTTGAATCTCGGGAAGCG 59.873 43.478 18.45 0.00 33.55 4.68
785 907 2.403252 ATTTGAATCTCGGGAAGCGT 57.597 45.000 0.00 0.00 0.00 5.07
786 908 1.438651 TTTGAATCTCGGGAAGCGTG 58.561 50.000 0.00 0.00 0.00 5.34
787 909 0.320374 TTGAATCTCGGGAAGCGTGT 59.680 50.000 0.00 0.00 0.00 4.49
788 910 0.389817 TGAATCTCGGGAAGCGTGTG 60.390 55.000 0.00 0.00 0.00 3.82
789 911 1.696832 GAATCTCGGGAAGCGTGTGC 61.697 60.000 0.00 0.00 43.24 4.57
799 921 4.798288 GCGTGTGCGGACTACATA 57.202 55.556 8.99 0.00 38.78 2.29
800 922 2.578369 GCGTGTGCGGACTACATAG 58.422 57.895 8.99 0.00 38.78 2.23
801 923 0.179145 GCGTGTGCGGACTACATAGT 60.179 55.000 8.99 0.00 37.68 2.12
802 924 1.545759 CGTGTGCGGACTACATAGTG 58.454 55.000 8.99 0.00 36.50 2.74
803 925 1.797713 CGTGTGCGGACTACATAGTGG 60.798 57.143 8.99 0.00 36.50 4.00
804 926 1.475280 GTGTGCGGACTACATAGTGGA 59.525 52.381 8.99 0.00 36.50 4.02
805 927 2.094390 GTGTGCGGACTACATAGTGGAA 60.094 50.000 8.99 0.00 36.50 3.53
806 928 2.094390 TGTGCGGACTACATAGTGGAAC 60.094 50.000 8.99 0.00 36.50 3.62
807 929 1.133598 TGCGGACTACATAGTGGAACG 59.866 52.381 0.00 0.00 45.86 3.95
808 930 1.402968 GCGGACTACATAGTGGAACGA 59.597 52.381 0.00 0.00 45.86 3.85
809 931 2.541178 GCGGACTACATAGTGGAACGAG 60.541 54.545 0.00 0.00 45.86 4.18
810 932 2.033049 CGGACTACATAGTGGAACGAGG 59.967 54.545 0.00 0.00 45.86 4.63
811 933 3.285484 GGACTACATAGTGGAACGAGGA 58.715 50.000 0.00 0.00 45.86 3.71
812 934 3.315749 GGACTACATAGTGGAACGAGGAG 59.684 52.174 0.00 0.00 45.86 3.69
813 935 3.288964 ACTACATAGTGGAACGAGGAGG 58.711 50.000 0.00 0.00 45.86 4.30
814 936 1.486211 ACATAGTGGAACGAGGAGGG 58.514 55.000 0.00 0.00 45.86 4.30
815 937 1.006758 ACATAGTGGAACGAGGAGGGA 59.993 52.381 0.00 0.00 45.86 4.20
816 938 1.683917 CATAGTGGAACGAGGAGGGAG 59.316 57.143 0.00 0.00 45.86 4.30
817 939 0.702902 TAGTGGAACGAGGAGGGAGT 59.297 55.000 0.00 0.00 45.86 3.85
818 940 0.702902 AGTGGAACGAGGAGGGAGTA 59.297 55.000 0.00 0.00 45.86 2.59
819 941 1.104630 GTGGAACGAGGAGGGAGTAG 58.895 60.000 0.00 0.00 0.00 2.57
820 942 0.702902 TGGAACGAGGAGGGAGTAGT 59.297 55.000 0.00 0.00 0.00 2.73
821 943 1.918262 TGGAACGAGGAGGGAGTAGTA 59.082 52.381 0.00 0.00 0.00 1.82
822 944 2.296792 GGAACGAGGAGGGAGTAGTAC 58.703 57.143 0.00 0.00 0.00 2.73
823 945 1.939255 GAACGAGGAGGGAGTAGTACG 59.061 57.143 0.00 0.00 0.00 3.67
824 946 0.908198 ACGAGGAGGGAGTAGTACGT 59.092 55.000 0.00 0.00 0.00 3.57
825 947 2.111384 ACGAGGAGGGAGTAGTACGTA 58.889 52.381 0.00 0.00 0.00 3.57
826 948 2.102252 ACGAGGAGGGAGTAGTACGTAG 59.898 54.545 0.00 0.00 0.00 3.51
828 950 3.319405 CGAGGAGGGAGTAGTACGTAGTA 59.681 52.174 6.02 6.02 45.11 1.82
847 969 7.094075 ACGTAGTACTGTGGATTTCAGTTCATA 60.094 37.037 5.39 0.00 42.50 2.15
848 970 7.432545 CGTAGTACTGTGGATTTCAGTTCATAG 59.567 40.741 5.39 0.00 42.50 2.23
849 971 6.109359 AGTACTGTGGATTTCAGTTCATAGC 58.891 40.000 0.00 0.00 42.50 2.97
851 973 5.503927 ACTGTGGATTTCAGTTCATAGCAT 58.496 37.500 0.00 0.00 42.50 3.79
852 974 6.653020 ACTGTGGATTTCAGTTCATAGCATA 58.347 36.000 0.00 0.00 42.50 3.14
853 975 6.540189 ACTGTGGATTTCAGTTCATAGCATAC 59.460 38.462 0.00 0.00 42.50 2.39
854 976 5.822519 TGTGGATTTCAGTTCATAGCATACC 59.177 40.000 0.00 0.00 0.00 2.73
855 977 5.050091 GTGGATTTCAGTTCATAGCATACCG 60.050 44.000 0.00 0.00 0.00 4.02
856 978 5.057149 GGATTTCAGTTCATAGCATACCGT 58.943 41.667 0.00 0.00 0.00 4.83
857 979 5.050091 GGATTTCAGTTCATAGCATACCGTG 60.050 44.000 0.00 0.00 0.00 4.94
858 980 3.452755 TCAGTTCATAGCATACCGTGG 57.547 47.619 0.00 0.00 0.00 4.94
859 981 2.102420 TCAGTTCATAGCATACCGTGGG 59.898 50.000 0.00 0.00 0.00 4.61
861 983 1.414919 GTTCATAGCATACCGTGGGGA 59.585 52.381 0.00 0.00 36.97 4.81
862 984 1.796017 TCATAGCATACCGTGGGGAA 58.204 50.000 0.00 0.00 36.97 3.97
864 986 2.038426 TCATAGCATACCGTGGGGAATG 59.962 50.000 0.00 0.00 36.97 2.67
873 999 0.662970 CGTGGGGAATGTTGTTTGCG 60.663 55.000 0.00 0.00 0.00 4.85
951 1077 1.736586 CGATAGAGGTGCCGCTTCT 59.263 57.895 0.00 0.00 37.33 2.85
993 1126 2.097728 GGCGGCGTTTCATTCGAC 59.902 61.111 9.37 0.00 0.00 4.20
994 1127 2.673114 GGCGGCGTTTCATTCGACA 61.673 57.895 9.37 0.00 35.94 4.35
1008 1141 2.476051 GACAGCCACATGAACGCG 59.524 61.111 3.53 3.53 0.00 6.01
1058 1191 3.121030 CGTCGTCGTACCGTCCCT 61.121 66.667 0.00 0.00 0.00 4.20
1911 2044 2.233271 CTGCAGAGGAACATGGTGTTT 58.767 47.619 8.42 0.00 41.28 2.83
1974 2107 2.105128 GGTGATCTGGAGTCGGCG 59.895 66.667 0.00 0.00 0.00 6.46
2059 2192 1.202371 TCATCGGAGTACATTGCCGTC 60.202 52.381 13.57 0.00 45.02 4.79
2118 2251 1.152830 GCTGTCCAGGGGGTTGAAA 59.847 57.895 0.00 0.00 34.93 2.69
2171 2304 3.071892 ACCGGGTGTTTTAGACATGAGAA 59.928 43.478 6.32 0.00 41.10 2.87
2206 2339 4.618460 GCTCGGAGTACTTTGACAAGATGA 60.618 45.833 6.90 0.00 33.72 2.92
2318 2451 0.647410 GTGACGGCAATGATCGACAG 59.353 55.000 0.00 0.00 32.69 3.51
2368 2501 4.225042 ACTGTAAGCTCATTGATGGGTACA 59.775 41.667 0.00 0.00 37.60 2.90
2452 2585 3.302365 ACCATGGCATCGAAGTTTTTG 57.698 42.857 13.04 0.00 0.00 2.44
2523 2656 4.384056 AGAAGTTTGTGTCTGTGATGGAG 58.616 43.478 0.00 0.00 0.00 3.86
2707 2840 8.485976 AAGAGTCATCAAAGTAAAGACATAGC 57.514 34.615 0.00 0.00 0.00 2.97
2748 2881 3.435327 CGCAGTTAGATGGTTTGTGCTTA 59.565 43.478 0.00 0.00 0.00 3.09
2844 3003 6.834959 AGATTCGTCTACATATTGCACTTG 57.165 37.500 0.00 0.00 0.00 3.16
2892 3051 5.437191 AAAATAGTAGGCTAGCCAACAGT 57.563 39.130 34.70 22.53 38.92 3.55
2930 3090 6.350110 GGCTGCTGAAAATAAAAGGACATGTA 60.350 38.462 0.00 0.00 0.00 2.29
2980 3141 3.686016 GAGAAATGAAACCTGCCCTACA 58.314 45.455 0.00 0.00 0.00 2.74
3011 3172 6.044404 GGGGAGGAATTACAAGAGAATCCATA 59.956 42.308 0.00 0.00 33.66 2.74
3084 3245 3.626977 TGTTATTTTCTGCTTGTGTGCG 58.373 40.909 0.00 0.00 35.36 5.34
3119 3280 5.221382 GCCAACCTATGATGCAGATCAAAAT 60.221 40.000 0.00 0.00 42.02 1.82
3126 3287 7.598869 CCTATGATGCAGATCAAAATCAAATGG 59.401 37.037 7.91 7.10 42.02 3.16
3127 3288 6.288941 TGATGCAGATCAAAATCAAATGGT 57.711 33.333 0.00 0.00 35.55 3.55
3148 3309 0.543749 CATCCCTTGGAGTCCAGACC 59.456 60.000 12.67 0.00 34.05 3.85
3159 3320 3.471680 GAGTCCAGACCAGATTATTGCC 58.528 50.000 0.00 0.00 0.00 4.52
3188 3351 8.572185 CATAACTACTCTATGAGTGTATGCTGT 58.428 37.037 10.14 0.00 43.30 4.40
3222 3385 6.428771 CCTTTTCAATGCAAAATGGATCACTT 59.571 34.615 8.03 0.00 34.47 3.16
3263 3426 3.883489 ACTGTAAGGGTTTGTTCTTCTGC 59.117 43.478 0.00 0.00 39.30 4.26
3326 3489 4.698780 TCTTTTTCCAGTGCTGATGATGAG 59.301 41.667 0.02 0.00 0.00 2.90
3337 3500 7.064728 CAGTGCTGATGATGAGATAATGTATGG 59.935 40.741 0.00 0.00 0.00 2.74
3394 3557 8.203485 TGTCATTCACATGTCTATAGCATTGTA 58.797 33.333 0.00 5.00 0.00 2.41
3475 3638 6.811170 TGTTCAGTGCTTTTAAGTTTTCTTGG 59.189 34.615 0.00 0.00 40.70 3.61
3523 3686 2.417933 CGGAAAGCCTCATTTCAGTCAG 59.582 50.000 2.05 0.00 40.29 3.51
3532 3695 4.756642 CCTCATTTCAGTCAGCAGTTAACA 59.243 41.667 8.61 0.00 0.00 2.41
3553 3716 3.616956 TCCTACATTCTGCTTGACCTG 57.383 47.619 0.00 0.00 0.00 4.00
3558 3721 5.525378 CCTACATTCTGCTTGACCTGATTAC 59.475 44.000 0.00 0.00 0.00 1.89
3568 3731 0.034089 ACCTGATTACAGCTTGCCCC 60.034 55.000 0.00 0.00 42.25 5.80
3601 3764 9.853555 TTTTGGCATGTTATAAGTCTGTATTTG 57.146 29.630 0.00 0.00 0.00 2.32
3602 3765 8.574251 TTGGCATGTTATAAGTCTGTATTTGT 57.426 30.769 0.00 0.00 0.00 2.83
3603 3766 7.984391 TGGCATGTTATAAGTCTGTATTTGTG 58.016 34.615 0.00 0.00 0.00 3.33
3604 3767 6.912591 GGCATGTTATAAGTCTGTATTTGTGC 59.087 38.462 0.00 0.00 0.00 4.57
3606 3769 7.676338 GCATGTTATAAGTCTGTATTTGTGCGT 60.676 37.037 0.00 0.00 0.00 5.24
3607 3770 7.056002 TGTTATAAGTCTGTATTTGTGCGTG 57.944 36.000 0.00 0.00 0.00 5.34
3608 3771 2.969443 AAGTCTGTATTTGTGCGTGC 57.031 45.000 0.00 0.00 0.00 5.34
3609 3772 1.877637 AGTCTGTATTTGTGCGTGCA 58.122 45.000 0.00 0.00 0.00 4.57
3611 3774 2.160219 AGTCTGTATTTGTGCGTGCATG 59.840 45.455 0.09 0.09 0.00 4.06
3612 3775 1.135717 TCTGTATTTGTGCGTGCATGC 60.136 47.619 24.20 24.20 0.00 4.06
3613 3776 0.595095 TGTATTTGTGCGTGCATGCA 59.405 45.000 29.30 29.30 43.95 3.96
3619 3782 2.179767 TGCGTGCATGCATTCAGC 59.820 55.556 29.30 24.52 40.62 4.26
3620 3783 2.337246 TGCGTGCATGCATTCAGCT 61.337 52.632 29.30 0.00 45.94 4.24
3621 3784 1.153901 GCGTGCATGCATTCAGCTT 60.154 52.632 25.64 0.00 45.94 3.74
3622 3785 1.138047 GCGTGCATGCATTCAGCTTC 61.138 55.000 25.64 7.15 45.94 3.86
3623 3786 0.450583 CGTGCATGCATTCAGCTTCT 59.549 50.000 25.64 0.00 45.94 2.85
3624 3787 1.667212 CGTGCATGCATTCAGCTTCTA 59.333 47.619 25.64 0.00 45.94 2.10
3625 3788 2.096335 CGTGCATGCATTCAGCTTCTAA 59.904 45.455 25.64 0.00 45.94 2.10
3626 3789 3.426560 CGTGCATGCATTCAGCTTCTAAA 60.427 43.478 25.64 0.00 45.94 1.85
3627 3790 4.487948 GTGCATGCATTCAGCTTCTAAAA 58.512 39.130 25.64 0.00 45.94 1.52
3628 3791 5.107133 GTGCATGCATTCAGCTTCTAAAAT 58.893 37.500 25.64 0.00 45.94 1.82
3629 3792 5.579511 GTGCATGCATTCAGCTTCTAAAATT 59.420 36.000 25.64 0.00 45.94 1.82
3630 3793 5.808540 TGCATGCATTCAGCTTCTAAAATTC 59.191 36.000 18.46 0.00 45.94 2.17
3631 3794 6.040878 GCATGCATTCAGCTTCTAAAATTCT 58.959 36.000 14.21 0.00 45.94 2.40
3632 3795 6.019801 GCATGCATTCAGCTTCTAAAATTCTG 60.020 38.462 14.21 0.00 45.94 3.02
3633 3796 6.579666 TGCATTCAGCTTCTAAAATTCTGT 57.420 33.333 0.00 0.00 45.94 3.41
3634 3797 6.615088 TGCATTCAGCTTCTAAAATTCTGTC 58.385 36.000 0.00 0.00 45.94 3.51
3635 3798 6.207221 TGCATTCAGCTTCTAAAATTCTGTCA 59.793 34.615 0.00 0.00 45.94 3.58
3636 3799 7.094075 TGCATTCAGCTTCTAAAATTCTGTCAT 60.094 33.333 0.00 0.00 45.94 3.06
3637 3800 8.400947 GCATTCAGCTTCTAAAATTCTGTCATA 58.599 33.333 0.00 0.00 41.15 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 2.079158 CCGAACATGCTGAATCTGTGT 58.921 47.619 0.00 0.00 0.00 3.72
84 137 1.173913 ATTGCAGGTAAAGTTCGGCC 58.826 50.000 0.00 0.00 0.00 6.13
113 166 1.083489 GATTTCACCATCGACCGCAA 58.917 50.000 0.00 0.00 0.00 4.85
131 184 6.393171 CGCTCATCAAGTTAGATATCCATGA 58.607 40.000 0.00 0.00 0.00 3.07
133 186 5.247110 ACCGCTCATCAAGTTAGATATCCAT 59.753 40.000 0.00 0.00 0.00 3.41
155 208 3.449377 TCCCAAACAAGAACAAAGGAACC 59.551 43.478 0.00 0.00 0.00 3.62
156 209 4.729227 TCCCAAACAAGAACAAAGGAAC 57.271 40.909 0.00 0.00 0.00 3.62
157 210 5.423610 TGAATCCCAAACAAGAACAAAGGAA 59.576 36.000 0.00 0.00 0.00 3.36
158 211 4.959210 TGAATCCCAAACAAGAACAAAGGA 59.041 37.500 0.00 0.00 0.00 3.36
159 212 5.275067 TGAATCCCAAACAAGAACAAAGG 57.725 39.130 0.00 0.00 0.00 3.11
161 214 6.047870 CACATGAATCCCAAACAAGAACAAA 58.952 36.000 0.00 0.00 0.00 2.83
163 216 4.892345 TCACATGAATCCCAAACAAGAACA 59.108 37.500 0.00 0.00 0.00 3.18
164 217 5.222631 GTCACATGAATCCCAAACAAGAAC 58.777 41.667 0.00 0.00 0.00 3.01
285 364 1.084370 CAAGCTGCAGGTACGCCTAC 61.084 60.000 20.51 0.00 44.97 3.18
286 365 1.218047 CAAGCTGCAGGTACGCCTA 59.782 57.895 20.51 0.00 44.97 3.93
288 367 3.804193 GCAAGCTGCAGGTACGCC 61.804 66.667 20.51 4.12 44.26 5.68
309 388 2.672714 GCAGACGGCGTATAATCATCA 58.327 47.619 14.74 0.00 0.00 3.07
321 400 1.959226 TTTCGAGGTTGCAGACGGC 60.959 57.895 0.00 0.00 45.13 5.68
322 401 0.878523 TGTTTCGAGGTTGCAGACGG 60.879 55.000 0.00 0.00 0.00 4.79
330 410 6.346896 GGTATTATCTCCTTGTTTCGAGGTT 58.653 40.000 3.36 0.00 36.45 3.50
332 412 4.982916 CGGTATTATCTCCTTGTTTCGAGG 59.017 45.833 0.00 0.00 36.39 4.63
342 429 0.879765 CGCGGACGGTATTATCTCCT 59.120 55.000 0.00 0.00 34.97 3.69
344 431 1.802960 TCTCGCGGACGGTATTATCTC 59.197 52.381 6.13 0.00 40.63 2.75
351 438 0.809636 TATCGTTCTCGCGGACGGTA 60.810 55.000 22.96 19.45 40.63 4.02
352 439 2.044832 CTATCGTTCTCGCGGACGGT 62.045 60.000 22.96 20.26 40.63 4.83
354 441 0.578683 TACTATCGTTCTCGCGGACG 59.421 55.000 19.38 19.38 42.01 4.79
355 442 1.596727 AGTACTATCGTTCTCGCGGAC 59.403 52.381 6.13 1.86 36.96 4.79
356 443 1.596260 CAGTACTATCGTTCTCGCGGA 59.404 52.381 6.13 0.00 36.96 5.54
357 444 1.329906 ACAGTACTATCGTTCTCGCGG 59.670 52.381 6.13 0.00 36.96 6.46
358 445 2.733820 ACAGTACTATCGTTCTCGCG 57.266 50.000 0.00 0.00 36.96 5.87
360 447 5.005203 AGACGTTACAGTACTATCGTTCTCG 59.995 44.000 12.47 7.73 38.55 4.04
361 448 6.343226 AGACGTTACAGTACTATCGTTCTC 57.657 41.667 12.47 4.13 0.00 2.87
364 451 6.425504 GCATAGACGTTACAGTACTATCGTT 58.574 40.000 12.47 7.59 0.00 3.85
371 458 4.845060 GCTATCGCATAGACGTTACAGTAC 59.155 45.833 0.00 0.00 34.77 2.73
372 459 4.512571 TGCTATCGCATAGACGTTACAGTA 59.487 41.667 0.00 0.00 42.25 2.74
373 460 3.314357 TGCTATCGCATAGACGTTACAGT 59.686 43.478 0.00 0.00 42.25 3.55
374 461 3.885358 TGCTATCGCATAGACGTTACAG 58.115 45.455 0.00 0.00 42.25 2.74
375 462 3.974871 TGCTATCGCATAGACGTTACA 57.025 42.857 0.00 0.00 42.25 2.41
392 479 4.292186 CCAGTATATGGGCTTACATGCT 57.708 45.455 0.00 0.00 46.36 3.79
404 491 8.506437 CACAGTTTATTGCCATACCAGTATATG 58.494 37.037 0.00 0.00 33.10 1.78
405 492 7.174946 GCACAGTTTATTGCCATACCAGTATAT 59.825 37.037 0.00 0.00 32.21 0.86
406 493 6.485313 GCACAGTTTATTGCCATACCAGTATA 59.515 38.462 0.00 0.00 32.21 1.47
407 494 5.299279 GCACAGTTTATTGCCATACCAGTAT 59.701 40.000 0.00 0.00 32.21 2.12
410 497 3.696051 AGCACAGTTTATTGCCATACCAG 59.304 43.478 0.00 0.00 39.75 4.00
412 499 3.242739 CGAGCACAGTTTATTGCCATACC 60.243 47.826 0.00 0.00 39.75 2.73
413 500 3.242739 CCGAGCACAGTTTATTGCCATAC 60.243 47.826 0.00 0.00 39.75 2.39
418 505 0.521242 CGCCGAGCACAGTTTATTGC 60.521 55.000 0.00 0.00 39.16 3.56
433 520 2.029288 AGAACATGAGTGCACGCCG 61.029 57.895 18.33 11.48 0.00 6.46
440 527 8.019669 CCTTTTTCAAGATACAGAACATGAGTG 58.980 37.037 0.00 0.00 30.57 3.51
441 528 7.308830 GCCTTTTTCAAGATACAGAACATGAGT 60.309 37.037 0.00 0.00 30.57 3.41
443 530 6.489700 TGCCTTTTTCAAGATACAGAACATGA 59.510 34.615 0.00 0.00 30.57 3.07
445 532 6.265196 TGTGCCTTTTTCAAGATACAGAACAT 59.735 34.615 0.00 0.00 30.57 2.71
450 547 7.383102 ACTATGTGCCTTTTTCAAGATACAG 57.617 36.000 0.00 0.00 32.59 2.74
457 554 5.843673 TGTGAACTATGTGCCTTTTTCAA 57.156 34.783 0.00 0.00 0.00 2.69
459 556 6.012658 TGATGTGAACTATGTGCCTTTTTC 57.987 37.500 0.00 0.00 0.00 2.29
460 557 6.403866 TTGATGTGAACTATGTGCCTTTTT 57.596 33.333 0.00 0.00 0.00 1.94
461 558 6.594788 ATTGATGTGAACTATGTGCCTTTT 57.405 33.333 0.00 0.00 0.00 2.27
462 559 6.886459 AGTATTGATGTGAACTATGTGCCTTT 59.114 34.615 0.00 0.00 0.00 3.11
463 560 6.317140 CAGTATTGATGTGAACTATGTGCCTT 59.683 38.462 0.00 0.00 0.00 4.35
464 561 5.819379 CAGTATTGATGTGAACTATGTGCCT 59.181 40.000 0.00 0.00 0.00 4.75
465 562 5.586243 ACAGTATTGATGTGAACTATGTGCC 59.414 40.000 0.00 0.00 0.00 5.01
492 597 9.533831 AGGTAATTTTACATTCAGAGTCCAATT 57.466 29.630 3.12 0.00 35.37 2.32
527 649 4.805719 TGTCAAATAAGCTCGCAGTATCAG 59.194 41.667 0.00 0.00 0.00 2.90
528 650 4.566759 GTGTCAAATAAGCTCGCAGTATCA 59.433 41.667 0.00 0.00 0.00 2.15
529 651 4.806247 AGTGTCAAATAAGCTCGCAGTATC 59.194 41.667 0.00 0.00 0.00 2.24
531 653 4.188247 AGTGTCAAATAAGCTCGCAGTA 57.812 40.909 0.00 0.00 0.00 2.74
533 655 4.177026 AGTAGTGTCAAATAAGCTCGCAG 58.823 43.478 0.00 0.00 0.00 5.18
534 656 4.174009 GAGTAGTGTCAAATAAGCTCGCA 58.826 43.478 0.00 0.00 0.00 5.10
536 658 4.113354 GGGAGTAGTGTCAAATAAGCTCG 58.887 47.826 0.00 0.00 0.00 5.03
537 659 5.346181 AGGGAGTAGTGTCAAATAAGCTC 57.654 43.478 0.00 0.00 0.00 4.09
538 660 4.162509 GGAGGGAGTAGTGTCAAATAAGCT 59.837 45.833 0.00 0.00 0.00 3.74
539 661 4.443621 GGAGGGAGTAGTGTCAAATAAGC 58.556 47.826 0.00 0.00 0.00 3.09
540 662 4.159879 ACGGAGGGAGTAGTGTCAAATAAG 59.840 45.833 0.00 0.00 0.00 1.73
541 663 4.091549 ACGGAGGGAGTAGTGTCAAATAA 58.908 43.478 0.00 0.00 0.00 1.40
542 664 3.705051 ACGGAGGGAGTAGTGTCAAATA 58.295 45.455 0.00 0.00 0.00 1.40
543 665 2.537143 ACGGAGGGAGTAGTGTCAAAT 58.463 47.619 0.00 0.00 0.00 2.32
544 666 2.005370 ACGGAGGGAGTAGTGTCAAA 57.995 50.000 0.00 0.00 0.00 2.69
545 667 1.891150 GAACGGAGGGAGTAGTGTCAA 59.109 52.381 0.00 0.00 0.00 3.18
546 668 1.542492 GAACGGAGGGAGTAGTGTCA 58.458 55.000 0.00 0.00 0.00 3.58
547 669 0.816373 GGAACGGAGGGAGTAGTGTC 59.184 60.000 0.00 0.00 0.00 3.67
548 670 0.113776 TGGAACGGAGGGAGTAGTGT 59.886 55.000 0.00 0.00 0.00 3.55
549 671 0.531200 GTGGAACGGAGGGAGTAGTG 59.469 60.000 0.00 0.00 0.00 2.74
550 672 0.113776 TGTGGAACGGAGGGAGTAGT 59.886 55.000 0.00 0.00 42.39 2.73
551 673 1.263356 TTGTGGAACGGAGGGAGTAG 58.737 55.000 0.00 0.00 42.39 2.57
552 674 1.553248 CATTGTGGAACGGAGGGAGTA 59.447 52.381 0.00 0.00 42.39 2.59
553 675 0.324943 CATTGTGGAACGGAGGGAGT 59.675 55.000 0.00 0.00 42.39 3.85
554 676 0.324943 ACATTGTGGAACGGAGGGAG 59.675 55.000 0.00 0.00 42.39 4.30
555 677 1.553248 CTACATTGTGGAACGGAGGGA 59.447 52.381 0.00 0.00 42.39 4.20
556 678 1.278127 ACTACATTGTGGAACGGAGGG 59.722 52.381 7.20 0.00 42.39 4.30
557 679 2.346803 CACTACATTGTGGAACGGAGG 58.653 52.381 7.20 0.00 42.39 4.30
558 680 1.732259 GCACTACATTGTGGAACGGAG 59.268 52.381 7.20 0.00 42.39 4.63
559 681 1.803334 GCACTACATTGTGGAACGGA 58.197 50.000 7.20 0.00 42.39 4.69
560 682 0.442310 CGCACTACATTGTGGAACGG 59.558 55.000 7.20 0.00 42.39 4.44
561 683 1.126113 GACGCACTACATTGTGGAACG 59.874 52.381 7.20 11.56 42.39 3.95
562 684 2.157668 CAGACGCACTACATTGTGGAAC 59.842 50.000 7.20 0.00 38.31 3.62
563 685 2.224185 ACAGACGCACTACATTGTGGAA 60.224 45.455 7.20 0.00 38.31 3.53
564 686 1.343142 ACAGACGCACTACATTGTGGA 59.657 47.619 7.20 0.00 38.31 4.02
565 687 1.460743 CACAGACGCACTACATTGTGG 59.539 52.381 0.00 0.00 38.31 4.17
566 688 1.136252 GCACAGACGCACTACATTGTG 60.136 52.381 0.00 0.00 40.62 3.33
567 689 1.148310 GCACAGACGCACTACATTGT 58.852 50.000 0.00 0.00 0.00 2.71
568 690 1.432514 AGCACAGACGCACTACATTG 58.567 50.000 0.00 0.00 0.00 2.82
569 691 2.069273 GAAGCACAGACGCACTACATT 58.931 47.619 0.00 0.00 0.00 2.71
570 692 1.673033 GGAAGCACAGACGCACTACAT 60.673 52.381 0.00 0.00 0.00 2.29
571 693 0.319555 GGAAGCACAGACGCACTACA 60.320 55.000 0.00 0.00 0.00 2.74
572 694 1.014564 GGGAAGCACAGACGCACTAC 61.015 60.000 0.00 0.00 0.00 2.73
573 695 1.292223 GGGAAGCACAGACGCACTA 59.708 57.895 0.00 0.00 0.00 2.74
574 696 2.031163 GGGAAGCACAGACGCACT 59.969 61.111 0.00 0.00 0.00 4.40
575 697 3.414700 CGGGAAGCACAGACGCAC 61.415 66.667 0.00 0.00 0.00 5.34
576 698 1.600511 TATCGGGAAGCACAGACGCA 61.601 55.000 0.00 0.00 0.00 5.24
577 699 0.249489 ATATCGGGAAGCACAGACGC 60.249 55.000 0.00 0.00 0.00 5.19
578 700 2.128035 GAATATCGGGAAGCACAGACG 58.872 52.381 0.00 0.00 0.00 4.18
579 701 3.179443 TGAATATCGGGAAGCACAGAC 57.821 47.619 0.00 0.00 0.00 3.51
580 702 3.197766 ACTTGAATATCGGGAAGCACAGA 59.802 43.478 0.00 0.00 0.00 3.41
581 703 3.535561 ACTTGAATATCGGGAAGCACAG 58.464 45.455 0.00 0.00 0.00 3.66
582 704 3.627395 ACTTGAATATCGGGAAGCACA 57.373 42.857 0.00 0.00 0.00 4.57
583 705 4.394920 TCAAACTTGAATATCGGGAAGCAC 59.605 41.667 0.00 0.00 33.55 4.40
584 706 4.394920 GTCAAACTTGAATATCGGGAAGCA 59.605 41.667 0.00 0.00 39.21 3.91
585 707 4.201920 GGTCAAACTTGAATATCGGGAAGC 60.202 45.833 0.00 0.00 39.21 3.86
586 708 4.034048 CGGTCAAACTTGAATATCGGGAAG 59.966 45.833 0.00 0.00 39.21 3.46
587 709 3.936453 CGGTCAAACTTGAATATCGGGAA 59.064 43.478 0.00 0.00 39.21 3.97
588 710 3.055675 ACGGTCAAACTTGAATATCGGGA 60.056 43.478 0.00 0.00 39.21 5.14
589 711 3.267483 ACGGTCAAACTTGAATATCGGG 58.733 45.455 0.00 0.00 39.21 5.14
590 712 6.411630 TTTACGGTCAAACTTGAATATCGG 57.588 37.500 0.00 0.00 39.21 4.18
591 713 8.889849 AAATTTACGGTCAAACTTGAATATCG 57.110 30.769 0.00 0.15 39.21 2.92
597 719 9.453325 GTTGATTAAATTTACGGTCAAACTTGA 57.547 29.630 15.77 0.00 34.20 3.02
598 720 8.414173 CGTTGATTAAATTTACGGTCAAACTTG 58.586 33.333 15.77 7.69 0.00 3.16
599 721 8.344098 TCGTTGATTAAATTTACGGTCAAACTT 58.656 29.630 15.77 0.00 33.37 2.66
600 722 7.863666 TCGTTGATTAAATTTACGGTCAAACT 58.136 30.769 15.77 0.00 33.37 2.66
601 723 8.011106 TCTCGTTGATTAAATTTACGGTCAAAC 58.989 33.333 15.77 11.49 33.37 2.93
602 724 8.011106 GTCTCGTTGATTAAATTTACGGTCAAA 58.989 33.333 15.77 6.49 33.37 2.69
603 725 7.360269 GGTCTCGTTGATTAAATTTACGGTCAA 60.360 37.037 9.79 11.25 33.37 3.18
604 726 6.091169 GGTCTCGTTGATTAAATTTACGGTCA 59.909 38.462 9.79 6.76 33.37 4.02
605 727 6.472680 GGTCTCGTTGATTAAATTTACGGTC 58.527 40.000 9.79 4.65 33.37 4.79
606 728 5.062558 CGGTCTCGTTGATTAAATTTACGGT 59.937 40.000 9.79 0.00 33.37 4.83
607 729 5.289193 TCGGTCTCGTTGATTAAATTTACGG 59.711 40.000 9.79 2.88 37.69 4.02
608 730 6.034256 AGTCGGTCTCGTTGATTAAATTTACG 59.966 38.462 0.00 0.61 37.69 3.18
609 731 7.171434 CAGTCGGTCTCGTTGATTAAATTTAC 58.829 38.462 0.00 0.00 37.69 2.01
610 732 6.183360 GCAGTCGGTCTCGTTGATTAAATTTA 60.183 38.462 0.00 0.00 37.69 1.40
611 733 5.390567 GCAGTCGGTCTCGTTGATTAAATTT 60.391 40.000 0.00 0.00 37.69 1.82
612 734 4.092968 GCAGTCGGTCTCGTTGATTAAATT 59.907 41.667 0.00 0.00 37.69 1.82
613 735 3.617263 GCAGTCGGTCTCGTTGATTAAAT 59.383 43.478 0.00 0.00 37.69 1.40
614 736 2.991190 GCAGTCGGTCTCGTTGATTAAA 59.009 45.455 0.00 0.00 37.69 1.52
615 737 2.602878 GCAGTCGGTCTCGTTGATTAA 58.397 47.619 0.00 0.00 37.69 1.40
616 738 1.466866 CGCAGTCGGTCTCGTTGATTA 60.467 52.381 0.00 0.00 37.69 1.75
617 739 0.732880 CGCAGTCGGTCTCGTTGATT 60.733 55.000 0.00 0.00 37.69 2.57
618 740 1.154016 CGCAGTCGGTCTCGTTGAT 60.154 57.895 0.00 0.00 37.69 2.57
619 741 2.254350 CGCAGTCGGTCTCGTTGA 59.746 61.111 0.00 0.00 37.69 3.18
631 753 4.947147 TTTTGCTCCCGCCGCAGT 62.947 61.111 0.00 0.00 38.80 4.40
632 754 4.107051 CTTTTGCTCCCGCCGCAG 62.107 66.667 0.00 0.00 38.80 5.18
633 755 4.947147 ACTTTTGCTCCCGCCGCA 62.947 61.111 0.00 0.00 35.22 5.69
634 756 3.670377 AACTTTTGCTCCCGCCGC 61.670 61.111 0.00 0.00 34.43 6.53
635 757 1.231958 TACAACTTTTGCTCCCGCCG 61.232 55.000 0.00 0.00 34.43 6.46
636 758 0.240145 GTACAACTTTTGCTCCCGCC 59.760 55.000 0.00 0.00 34.43 6.13
637 759 0.240145 GGTACAACTTTTGCTCCCGC 59.760 55.000 0.00 0.00 0.00 6.13
638 760 1.265905 GTGGTACAACTTTTGCTCCCG 59.734 52.381 0.00 0.00 44.16 5.14
639 761 2.293399 CAGTGGTACAACTTTTGCTCCC 59.707 50.000 0.00 0.00 44.16 4.30
640 762 3.211045 TCAGTGGTACAACTTTTGCTCC 58.789 45.455 0.00 0.00 44.16 4.70
641 763 3.877508 ACTCAGTGGTACAACTTTTGCTC 59.122 43.478 0.00 0.00 44.16 4.26
642 764 3.886123 ACTCAGTGGTACAACTTTTGCT 58.114 40.909 0.00 0.00 44.16 3.91
643 765 5.744666 TTACTCAGTGGTACAACTTTTGC 57.255 39.130 0.00 0.00 44.16 3.68
644 766 9.581099 AATTTTTACTCAGTGGTACAACTTTTG 57.419 29.630 0.00 0.00 44.16 2.44
648 770 8.512138 GCATAATTTTTACTCAGTGGTACAACT 58.488 33.333 0.00 0.00 44.16 3.16
649 771 7.753580 GGCATAATTTTTACTCAGTGGTACAAC 59.246 37.037 0.00 0.00 44.16 3.32
650 772 7.448777 TGGCATAATTTTTACTCAGTGGTACAA 59.551 33.333 0.00 0.00 44.16 2.41
651 773 6.943146 TGGCATAATTTTTACTCAGTGGTACA 59.057 34.615 0.00 0.00 0.00 2.90
652 774 7.120726 AGTGGCATAATTTTTACTCAGTGGTAC 59.879 37.037 0.00 0.00 0.00 3.34
653 775 7.120579 CAGTGGCATAATTTTTACTCAGTGGTA 59.879 37.037 0.00 0.00 0.00 3.25
654 776 6.010219 AGTGGCATAATTTTTACTCAGTGGT 58.990 36.000 0.00 0.00 0.00 4.16
655 777 6.150976 TCAGTGGCATAATTTTTACTCAGTGG 59.849 38.462 0.00 0.00 0.00 4.00
656 778 7.144722 TCAGTGGCATAATTTTTACTCAGTG 57.855 36.000 0.00 0.00 0.00 3.66
657 779 7.759489 TTCAGTGGCATAATTTTTACTCAGT 57.241 32.000 0.00 0.00 0.00 3.41
658 780 9.643693 AAATTCAGTGGCATAATTTTTACTCAG 57.356 29.630 10.51 0.00 30.62 3.35
659 781 9.421806 CAAATTCAGTGGCATAATTTTTACTCA 57.578 29.630 12.58 0.00 32.05 3.41
660 782 9.423061 ACAAATTCAGTGGCATAATTTTTACTC 57.577 29.630 12.58 0.00 32.05 2.59
668 790 9.941325 TCAAAAATACAAATTCAGTGGCATAAT 57.059 25.926 0.00 0.00 0.00 1.28
669 791 9.941325 ATCAAAAATACAAATTCAGTGGCATAA 57.059 25.926 0.00 0.00 0.00 1.90
671 793 9.369904 GTATCAAAAATACAAATTCAGTGGCAT 57.630 29.630 0.00 0.00 0.00 4.40
672 794 7.540400 CGTATCAAAAATACAAATTCAGTGGCA 59.460 33.333 0.00 0.00 0.00 4.92
673 795 7.753132 TCGTATCAAAAATACAAATTCAGTGGC 59.247 33.333 0.00 0.00 0.00 5.01
674 796 9.787532 ATCGTATCAAAAATACAAATTCAGTGG 57.212 29.630 0.00 0.00 0.00 4.00
687 809 8.335356 CCACTGAATTCGTATCGTATCAAAAAT 58.665 33.333 0.04 0.00 0.00 1.82
688 810 7.332430 ACCACTGAATTCGTATCGTATCAAAAA 59.668 33.333 0.04 0.00 0.00 1.94
689 811 6.814644 ACCACTGAATTCGTATCGTATCAAAA 59.185 34.615 0.04 0.00 0.00 2.44
690 812 6.334989 ACCACTGAATTCGTATCGTATCAAA 58.665 36.000 0.04 0.00 0.00 2.69
691 813 5.898174 ACCACTGAATTCGTATCGTATCAA 58.102 37.500 0.04 0.00 0.00 2.57
692 814 5.509716 ACCACTGAATTCGTATCGTATCA 57.490 39.130 0.04 0.00 0.00 2.15
693 815 9.784680 ATTATACCACTGAATTCGTATCGTATC 57.215 33.333 0.04 0.00 0.00 2.24
695 817 9.970395 AAATTATACCACTGAATTCGTATCGTA 57.030 29.630 0.04 4.50 0.00 3.43
696 818 8.882415 AAATTATACCACTGAATTCGTATCGT 57.118 30.769 0.04 2.71 0.00 3.73
699 821 9.730420 GCAAAAATTATACCACTGAATTCGTAT 57.270 29.630 0.04 5.16 0.00 3.06
700 822 8.952278 AGCAAAAATTATACCACTGAATTCGTA 58.048 29.630 0.04 0.00 0.00 3.43
701 823 7.826690 AGCAAAAATTATACCACTGAATTCGT 58.173 30.769 0.04 0.00 0.00 3.85
702 824 7.432252 GGAGCAAAAATTATACCACTGAATTCG 59.568 37.037 0.04 0.00 0.00 3.34
703 825 7.706607 GGGAGCAAAAATTATACCACTGAATTC 59.293 37.037 0.00 0.00 0.00 2.17
704 826 7.555965 GGGAGCAAAAATTATACCACTGAATT 58.444 34.615 0.00 0.00 0.00 2.17
705 827 6.183360 CGGGAGCAAAAATTATACCACTGAAT 60.183 38.462 0.00 0.00 0.00 2.57
706 828 5.124776 CGGGAGCAAAAATTATACCACTGAA 59.875 40.000 0.00 0.00 0.00 3.02
707 829 4.638421 CGGGAGCAAAAATTATACCACTGA 59.362 41.667 0.00 0.00 0.00 3.41
708 830 4.920376 CGGGAGCAAAAATTATACCACTG 58.080 43.478 0.00 0.00 0.00 3.66
732 854 2.814280 AACTACCGAGACCAACTGTG 57.186 50.000 0.00 0.00 0.00 3.66
733 855 4.942761 TTTAACTACCGAGACCAACTGT 57.057 40.909 0.00 0.00 0.00 3.55
734 856 6.796705 AAATTTAACTACCGAGACCAACTG 57.203 37.500 0.00 0.00 0.00 3.16
735 857 7.551617 CCATAAATTTAACTACCGAGACCAACT 59.448 37.037 1.21 0.00 0.00 3.16
736 858 7.335171 ACCATAAATTTAACTACCGAGACCAAC 59.665 37.037 1.21 0.00 0.00 3.77
737 859 7.396418 ACCATAAATTTAACTACCGAGACCAA 58.604 34.615 1.21 0.00 0.00 3.67
738 860 6.949715 ACCATAAATTTAACTACCGAGACCA 58.050 36.000 1.21 0.00 0.00 4.02
739 861 7.043565 TGACCATAAATTTAACTACCGAGACC 58.956 38.462 1.21 0.00 0.00 3.85
740 862 8.483307 TTGACCATAAATTTAACTACCGAGAC 57.517 34.615 1.21 0.00 0.00 3.36
741 863 9.675464 ATTTGACCATAAATTTAACTACCGAGA 57.325 29.630 1.21 0.00 0.00 4.04
752 874 9.369904 CCGAGATTCAAATTTGACCATAAATTT 57.630 29.630 20.35 5.79 45.92 1.82
753 875 7.981225 CCCGAGATTCAAATTTGACCATAAATT 59.019 33.333 20.35 1.32 40.84 1.82
754 876 7.341769 TCCCGAGATTCAAATTTGACCATAAAT 59.658 33.333 20.35 10.14 36.83 1.40
755 877 6.661377 TCCCGAGATTCAAATTTGACCATAAA 59.339 34.615 20.35 5.44 36.83 1.40
756 878 6.184068 TCCCGAGATTCAAATTTGACCATAA 58.816 36.000 20.35 6.18 36.83 1.90
757 879 5.750524 TCCCGAGATTCAAATTTGACCATA 58.249 37.500 20.35 6.57 36.83 2.74
758 880 4.599041 TCCCGAGATTCAAATTTGACCAT 58.401 39.130 20.35 12.30 36.83 3.55
759 881 4.027674 TCCCGAGATTCAAATTTGACCA 57.972 40.909 20.35 7.69 36.83 4.02
760 882 4.675408 GCTTCCCGAGATTCAAATTTGACC 60.675 45.833 20.35 14.56 36.83 4.02
761 883 4.415735 GCTTCCCGAGATTCAAATTTGAC 58.584 43.478 20.35 10.24 36.83 3.18
762 884 3.126858 CGCTTCCCGAGATTCAAATTTGA 59.873 43.478 16.91 16.91 40.02 2.69
763 885 3.119849 ACGCTTCCCGAGATTCAAATTTG 60.120 43.478 12.15 12.15 41.02 2.32
764 886 3.081804 ACGCTTCCCGAGATTCAAATTT 58.918 40.909 0.00 0.00 41.02 1.82
765 887 2.420022 CACGCTTCCCGAGATTCAAATT 59.580 45.455 0.00 0.00 41.02 1.82
766 888 2.009774 CACGCTTCCCGAGATTCAAAT 58.990 47.619 0.00 0.00 41.02 2.32
767 889 1.270625 ACACGCTTCCCGAGATTCAAA 60.271 47.619 0.00 0.00 41.02 2.69
768 890 0.320374 ACACGCTTCCCGAGATTCAA 59.680 50.000 0.00 0.00 41.02 2.69
769 891 0.389817 CACACGCTTCCCGAGATTCA 60.390 55.000 0.00 0.00 41.02 2.57
770 892 1.696832 GCACACGCTTCCCGAGATTC 61.697 60.000 0.00 0.00 41.02 2.52
771 893 1.741770 GCACACGCTTCCCGAGATT 60.742 57.895 0.00 0.00 41.02 2.40
772 894 2.125512 GCACACGCTTCCCGAGAT 60.126 61.111 0.00 0.00 41.02 2.75
773 895 4.717629 CGCACACGCTTCCCGAGA 62.718 66.667 0.00 0.00 41.02 4.04
777 899 3.291101 TAGTCCGCACACGCTTCCC 62.291 63.158 0.00 0.00 38.22 3.97
778 900 2.092882 GTAGTCCGCACACGCTTCC 61.093 63.158 0.00 0.00 38.22 3.46
779 901 0.736325 ATGTAGTCCGCACACGCTTC 60.736 55.000 0.00 0.00 38.22 3.86
780 902 0.528924 TATGTAGTCCGCACACGCTT 59.471 50.000 0.00 0.00 38.22 4.68
781 903 0.100682 CTATGTAGTCCGCACACGCT 59.899 55.000 0.00 0.00 38.22 5.07
782 904 0.179145 ACTATGTAGTCCGCACACGC 60.179 55.000 0.00 0.00 38.22 5.34
783 905 1.545759 CACTATGTAGTCCGCACACG 58.454 55.000 0.00 0.00 33.46 4.49
784 906 1.475280 TCCACTATGTAGTCCGCACAC 59.525 52.381 0.00 0.00 33.46 3.82
785 907 1.842052 TCCACTATGTAGTCCGCACA 58.158 50.000 0.00 0.00 33.46 4.57
786 908 2.537401 GTTCCACTATGTAGTCCGCAC 58.463 52.381 0.00 0.00 33.46 5.34
787 909 1.133598 CGTTCCACTATGTAGTCCGCA 59.866 52.381 0.00 0.00 33.46 5.69
788 910 1.402968 TCGTTCCACTATGTAGTCCGC 59.597 52.381 0.00 0.00 33.46 5.54
789 911 2.033049 CCTCGTTCCACTATGTAGTCCG 59.967 54.545 0.00 0.00 33.46 4.79
790 912 3.285484 TCCTCGTTCCACTATGTAGTCC 58.715 50.000 0.00 0.00 33.46 3.85
791 913 3.315749 CCTCCTCGTTCCACTATGTAGTC 59.684 52.174 0.00 0.00 33.46 2.59
792 914 3.288964 CCTCCTCGTTCCACTATGTAGT 58.711 50.000 0.00 0.00 36.90 2.73
793 915 2.623889 CCCTCCTCGTTCCACTATGTAG 59.376 54.545 0.00 0.00 0.00 2.74
794 916 2.242965 TCCCTCCTCGTTCCACTATGTA 59.757 50.000 0.00 0.00 0.00 2.29
795 917 1.006758 TCCCTCCTCGTTCCACTATGT 59.993 52.381 0.00 0.00 0.00 2.29
796 918 1.683917 CTCCCTCCTCGTTCCACTATG 59.316 57.143 0.00 0.00 0.00 2.23
797 919 1.288335 ACTCCCTCCTCGTTCCACTAT 59.712 52.381 0.00 0.00 0.00 2.12
798 920 0.702902 ACTCCCTCCTCGTTCCACTA 59.297 55.000 0.00 0.00 0.00 2.74
799 921 0.702902 TACTCCCTCCTCGTTCCACT 59.297 55.000 0.00 0.00 0.00 4.00
800 922 1.104630 CTACTCCCTCCTCGTTCCAC 58.895 60.000 0.00 0.00 0.00 4.02
801 923 0.702902 ACTACTCCCTCCTCGTTCCA 59.297 55.000 0.00 0.00 0.00 3.53
802 924 2.296792 GTACTACTCCCTCCTCGTTCC 58.703 57.143 0.00 0.00 0.00 3.62
803 925 1.939255 CGTACTACTCCCTCCTCGTTC 59.061 57.143 0.00 0.00 0.00 3.95
804 926 1.280421 ACGTACTACTCCCTCCTCGTT 59.720 52.381 0.00 0.00 0.00 3.85
805 927 0.908198 ACGTACTACTCCCTCCTCGT 59.092 55.000 0.00 0.00 0.00 4.18
806 928 2.102252 ACTACGTACTACTCCCTCCTCG 59.898 54.545 0.00 0.00 0.00 4.63
807 929 3.836365 ACTACGTACTACTCCCTCCTC 57.164 52.381 0.00 0.00 0.00 3.71
808 930 4.100808 CAGTACTACGTACTACTCCCTCCT 59.899 50.000 10.78 0.00 46.08 3.69
809 931 4.141824 ACAGTACTACGTACTACTCCCTCC 60.142 50.000 10.78 0.00 46.08 4.30
810 932 4.808364 CACAGTACTACGTACTACTCCCTC 59.192 50.000 10.78 0.00 46.08 4.30
811 933 4.383552 CCACAGTACTACGTACTACTCCCT 60.384 50.000 10.78 0.00 46.08 4.20
812 934 3.873952 CCACAGTACTACGTACTACTCCC 59.126 52.174 10.78 0.00 46.08 4.30
813 935 4.759782 TCCACAGTACTACGTACTACTCC 58.240 47.826 10.78 0.00 46.08 3.85
814 936 6.917217 AATCCACAGTACTACGTACTACTC 57.083 41.667 10.78 0.00 46.08 2.59
815 937 6.881065 TGAAATCCACAGTACTACGTACTACT 59.119 38.462 8.56 8.56 46.08 2.57
816 938 7.076842 TGAAATCCACAGTACTACGTACTAC 57.923 40.000 6.38 0.00 46.08 2.73
817 939 6.881065 ACTGAAATCCACAGTACTACGTACTA 59.119 38.462 6.38 0.00 46.08 1.82
819 941 5.947443 ACTGAAATCCACAGTACTACGTAC 58.053 41.667 0.00 0.00 45.10 3.67
820 942 6.207221 TGAACTGAAATCCACAGTACTACGTA 59.793 38.462 0.00 0.00 46.01 3.57
821 943 5.010314 TGAACTGAAATCCACAGTACTACGT 59.990 40.000 0.00 0.00 46.01 3.57
822 944 5.466819 TGAACTGAAATCCACAGTACTACG 58.533 41.667 0.00 0.00 46.01 3.51
823 945 7.222999 GCTATGAACTGAAATCCACAGTACTAC 59.777 40.741 0.00 0.00 46.01 2.73
824 946 7.093509 TGCTATGAACTGAAATCCACAGTACTA 60.094 37.037 0.00 0.00 46.01 1.82
825 947 6.109359 GCTATGAACTGAAATCCACAGTACT 58.891 40.000 0.00 0.00 46.01 2.73
826 948 5.874810 TGCTATGAACTGAAATCCACAGTAC 59.125 40.000 0.00 0.00 46.01 2.73
827 949 6.048732 TGCTATGAACTGAAATCCACAGTA 57.951 37.500 0.00 0.00 46.01 2.74
829 951 6.017605 GGTATGCTATGAACTGAAATCCACAG 60.018 42.308 0.00 0.00 40.68 3.66
836 958 4.188462 CCACGGTATGCTATGAACTGAAA 58.812 43.478 0.00 0.00 0.00 2.69
838 960 2.102420 CCCACGGTATGCTATGAACTGA 59.898 50.000 0.00 0.00 0.00 3.41
839 961 2.483876 CCCACGGTATGCTATGAACTG 58.516 52.381 0.00 0.00 0.00 3.16
847 969 0.623723 AACATTCCCCACGGTATGCT 59.376 50.000 0.00 0.00 39.85 3.79
848 970 0.738389 CAACATTCCCCACGGTATGC 59.262 55.000 0.00 0.00 39.85 3.14
849 971 2.122783 ACAACATTCCCCACGGTATG 57.877 50.000 0.00 0.00 41.49 2.39
851 973 2.231529 CAAACAACATTCCCCACGGTA 58.768 47.619 0.00 0.00 0.00 4.02
852 974 1.036707 CAAACAACATTCCCCACGGT 58.963 50.000 0.00 0.00 0.00 4.83
853 975 0.319469 GCAAACAACATTCCCCACGG 60.319 55.000 0.00 0.00 0.00 4.94
854 976 0.662970 CGCAAACAACATTCCCCACG 60.663 55.000 0.00 0.00 0.00 4.94
855 977 0.319469 CCGCAAACAACATTCCCCAC 60.319 55.000 0.00 0.00 0.00 4.61
856 978 0.757188 ACCGCAAACAACATTCCCCA 60.757 50.000 0.00 0.00 0.00 4.96
857 979 0.391228 AACCGCAAACAACATTCCCC 59.609 50.000 0.00 0.00 0.00 4.81
858 980 1.864082 CAAACCGCAAACAACATTCCC 59.136 47.619 0.00 0.00 0.00 3.97
859 981 2.538037 GACAAACCGCAAACAACATTCC 59.462 45.455 0.00 0.00 0.00 3.01
861 983 3.238108 TGACAAACCGCAAACAACATT 57.762 38.095 0.00 0.00 0.00 2.71
862 984 2.949451 TGACAAACCGCAAACAACAT 57.051 40.000 0.00 0.00 0.00 2.71
864 986 3.078594 AGATGACAAACCGCAAACAAC 57.921 42.857 0.00 0.00 0.00 3.32
873 999 3.921677 TGGACGACTAAGATGACAAACC 58.078 45.455 0.00 0.00 0.00 3.27
918 1044 3.387947 TCGGGGCTCGAAGGTTCC 61.388 66.667 7.19 0.00 45.86 3.62
934 1060 1.137086 TGAAGAAGCGGCACCTCTATC 59.863 52.381 1.45 3.23 0.00 2.08
937 1063 1.004440 GTGAAGAAGCGGCACCTCT 60.004 57.895 1.45 0.00 0.00 3.69
938 1064 2.035442 GGTGAAGAAGCGGCACCTC 61.035 63.158 1.45 0.00 46.56 3.85
967 1093 2.624437 GAAACGCCGCCGAGGTAGAT 62.624 60.000 0.00 0.00 43.70 1.98
1395 1528 3.543536 GATGGCGGCCTGGAGGATC 62.544 68.421 21.46 9.71 37.39 3.36
1396 1529 3.564218 GATGGCGGCCTGGAGGAT 61.564 66.667 21.46 3.48 37.39 3.24
1441 1574 2.010497 GAAGAAGGCGTCCAGGAAATC 58.990 52.381 0.00 0.00 0.00 2.17
1557 1690 4.715130 AGGTACCGGCAGGCCTCA 62.715 66.667 0.00 0.00 42.76 3.86
1600 1733 2.125106 GGCGTTGAAGGCGGAGAT 60.125 61.111 3.64 0.00 0.00 2.75
1911 2044 1.067846 AGCGAGTAAGCAACGTCATCA 60.068 47.619 0.00 0.00 40.15 3.07
1977 2110 1.807165 CATGTCGTCCCACTGCTCG 60.807 63.158 0.00 0.00 0.00 5.03
2059 2192 0.524862 GCCTCACTGACATTGCCTTG 59.475 55.000 0.00 0.00 0.00 3.61
2171 2304 0.754957 CTCCGAGCCCTCATCTGTCT 60.755 60.000 0.00 0.00 0.00 3.41
2206 2339 2.892025 GCACAAGGCCTTCATGGAT 58.108 52.632 17.29 0.00 38.35 3.41
2368 2501 0.111061 TCAGCATCACCAACCTTGCT 59.889 50.000 0.00 0.00 45.86 3.91
2385 2518 7.665145 TCATGATAAATCTTGACAACACCTTCA 59.335 33.333 0.00 0.00 36.45 3.02
2452 2585 2.191641 GCCACTGATCAGGGAGGC 59.808 66.667 28.57 28.57 37.64 4.70
2523 2656 0.392998 TCGGAGCCAGCAATTTCCTC 60.393 55.000 0.00 0.00 0.00 3.71
2707 2840 3.511540 TGCGAGATCAGGTATTATGGGAG 59.488 47.826 0.00 0.00 0.00 4.30
2748 2881 3.566553 CCCCCTTTAGCTTTTCTCCCATT 60.567 47.826 0.00 0.00 0.00 3.16
2819 2953 6.834959 AGTGCAATATGTAGACGAATCTTG 57.165 37.500 0.00 0.00 36.29 3.02
2826 2960 5.530519 ACAACAAGTGCAATATGTAGACG 57.469 39.130 0.00 0.00 0.00 4.18
2892 3051 1.303561 GCAGCCTCATGGTGGTTCA 60.304 57.895 7.35 0.00 42.81 3.18
2930 3090 3.202211 AGGGAGGCCTTAATTTCTCCTT 58.798 45.455 6.77 0.00 43.81 3.36
2980 3141 4.175962 TCTTGTAATTCCTCCCCTCACTT 58.824 43.478 0.00 0.00 0.00 3.16
3011 3172 5.629079 CCTTACAAGGCGAGAAAAGAAAT 57.371 39.130 0.00 0.00 39.76 2.17
3084 3245 1.204146 TAGGTTGGCCTCATCCACTC 58.796 55.000 3.32 0.00 45.64 3.51
3104 3265 6.103330 CACCATTTGATTTTGATCTGCATCA 58.897 36.000 0.00 0.00 37.24 3.07
3119 3280 1.076841 TCCAAGGGATGCACCATTTGA 59.923 47.619 16.20 10.63 40.93 2.69
3126 3287 0.393537 CTGGACTCCAAGGGATGCAC 60.394 60.000 0.00 0.00 30.80 4.57
3127 3288 0.547471 TCTGGACTCCAAGGGATGCA 60.547 55.000 0.00 0.00 30.80 3.96
3148 3309 8.668510 AGAGTAGTTATGTTGGCAATAATCTG 57.331 34.615 1.92 0.00 0.00 2.90
3159 3320 9.186323 GCATACACTCATAGAGTAGTTATGTTG 57.814 37.037 16.11 7.23 41.37 3.33
3188 3351 4.380843 TGCATTGAAAAGGTCCTAGGAA 57.619 40.909 14.65 0.00 0.00 3.36
3222 3385 3.503363 CAGTAACAGGCAAGCAGAAATCA 59.497 43.478 0.00 0.00 0.00 2.57
3337 3500 7.938563 TGGTTCAGTGCATTAAAAATGTTAC 57.061 32.000 0.00 2.45 0.00 2.50
3394 3557 6.210385 AGAGTCAGTTTGATAGATGACACTGT 59.790 38.462 6.91 0.00 43.55 3.55
3488 3651 7.676004 TGAGGCTTTCCGATTATCACAATATA 58.324 34.615 0.00 0.00 37.47 0.86
3501 3664 2.038426 TGACTGAAATGAGGCTTTCCGA 59.962 45.455 0.00 0.00 34.83 4.55
3507 3670 1.350351 ACTGCTGACTGAAATGAGGCT 59.650 47.619 0.00 0.00 0.00 4.58
3523 3686 4.878397 AGCAGAATGTAGGATGTTAACTGC 59.122 41.667 7.22 0.00 45.30 4.40
3532 3695 3.776969 TCAGGTCAAGCAGAATGTAGGAT 59.223 43.478 0.00 0.00 39.31 3.24
3553 3716 1.478105 CAAAGGGGGCAAGCTGTAATC 59.522 52.381 0.00 0.00 0.00 1.75
3558 3721 1.761500 AAAGCAAAGGGGGCAAGCTG 61.761 55.000 0.00 0.00 35.42 4.24
3601 3764 2.156446 GCTGAATGCATGCACGCAC 61.156 57.895 25.37 14.59 46.56 5.34
3603 3766 1.138047 GAAGCTGAATGCATGCACGC 61.138 55.000 25.37 21.64 45.94 5.34
3604 3767 0.450583 AGAAGCTGAATGCATGCACG 59.549 50.000 25.37 12.82 45.94 5.34
3606 3769 4.787260 TTTTAGAAGCTGAATGCATGCA 57.213 36.364 25.04 25.04 45.94 3.96
3607 3770 6.019801 CAGAATTTTAGAAGCTGAATGCATGC 60.020 38.462 11.82 11.82 45.94 4.06
3608 3771 7.033791 ACAGAATTTTAGAAGCTGAATGCATG 58.966 34.615 0.00 0.00 45.94 4.06
3609 3772 7.094075 TGACAGAATTTTAGAAGCTGAATGCAT 60.094 33.333 0.00 0.00 45.94 3.96
3611 3774 6.615088 TGACAGAATTTTAGAAGCTGAATGC 58.385 36.000 0.00 0.00 43.29 3.56
3615 3778 9.896645 AGAATATGACAGAATTTTAGAAGCTGA 57.103 29.630 0.00 0.00 0.00 4.26
3637 3800 9.372369 GCACACATTTAAGTAGAGAACTAGAAT 57.628 33.333 0.00 0.00 37.50 2.40
3638 3801 8.364894 TGCACACATTTAAGTAGAGAACTAGAA 58.635 33.333 0.00 0.00 37.50 2.10
3642 3805 6.202954 GTGTGCACACATTTAAGTAGAGAACT 59.797 38.462 38.42 0.00 45.75 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.