Multiple sequence alignment - TraesCS3D01G091500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G091500 chr3D 100.000 6836 0 0 945 7780 46255989 46262824 0.000000e+00 12624.0
1 TraesCS3D01G091500 chr3D 100.000 667 0 0 1 667 46255045 46255711 0.000000e+00 1232.0
2 TraesCS3D01G091500 chr3D 90.588 170 16 0 3770 3939 347591140 347590971 7.850000e-55 226.0
3 TraesCS3D01G091500 chr3D 98.361 122 2 0 4314 4435 346837440 346837561 1.700000e-51 215.0
4 TraesCS3D01G091500 chr3D 86.364 110 14 1 2158 2267 517487891 517487783 1.370000e-22 119.0
5 TraesCS3D01G091500 chr3A 95.064 3181 111 20 4433 7590 57868454 57871611 0.000000e+00 4963.0
6 TraesCS3D01G091500 chr3A 91.084 2030 102 26 1112 3110 57865324 57867305 0.000000e+00 2673.0
7 TraesCS3D01G091500 chr3A 90.226 1197 85 13 5143 6337 652197528 652198694 0.000000e+00 1533.0
8 TraesCS3D01G091500 chr3A 96.919 779 19 1 3547 4320 57867678 57868456 0.000000e+00 1301.0
9 TraesCS3D01G091500 chr3A 92.754 276 18 2 6063 6337 497177081 497177355 1.570000e-106 398.0
10 TraesCS3D01G091500 chr3A 92.549 255 15 2 3296 3550 57867306 57867556 5.740000e-96 363.0
11 TraesCS3D01G091500 chr3A 95.918 147 6 0 945 1091 57864615 57864761 1.010000e-58 239.0
12 TraesCS3D01G091500 chr3A 96.825 126 3 1 4319 4444 702912140 702912264 7.910000e-50 209.0
13 TraesCS3D01G091500 chr3A 91.429 140 11 1 2197 2335 653330512 653330373 2.870000e-44 191.0
14 TraesCS3D01G091500 chr3B 91.848 2073 128 21 4433 6495 72460434 72462475 0.000000e+00 2854.0
15 TraesCS3D01G091500 chr3B 92.975 1879 97 21 1117 2982 72456421 72458277 0.000000e+00 2706.0
16 TraesCS3D01G091500 chr3B 84.314 816 61 16 2980 3755 72458358 72459146 0.000000e+00 736.0
17 TraesCS3D01G091500 chr3B 89.312 552 37 10 3770 4320 72459906 72460436 0.000000e+00 673.0
18 TraesCS3D01G091500 chr3B 86.018 565 54 16 110 663 580522696 580522146 4.050000e-162 582.0
19 TraesCS3D01G091500 chr3B 83.207 661 58 22 6523 7153 72462476 72463113 2.450000e-154 556.0
20 TraesCS3D01G091500 chr3B 89.147 129 11 2 34 162 580522732 580522607 2.910000e-34 158.0
21 TraesCS3D01G091500 chr3B 87.097 93 12 0 2265 2357 681209958 681209866 1.070000e-18 106.0
22 TraesCS3D01G091500 chr3B 93.548 62 4 0 7190 7251 72463415 72463476 8.310000e-15 93.5
23 TraesCS3D01G091500 chr6D 91.646 1197 67 13 5143 6337 7624919 7626084 0.000000e+00 1626.0
24 TraesCS3D01G091500 chr6D 90.519 675 43 18 1 663 103049923 103050588 0.000000e+00 872.0
25 TraesCS3D01G091500 chr7B 90.018 1132 79 16 5210 6337 693048935 693047834 0.000000e+00 1434.0
26 TraesCS3D01G091500 chr2B 88.574 1129 81 11 5210 6337 704191651 704190570 0.000000e+00 1327.0
27 TraesCS3D01G091500 chr2B 99.160 119 1 0 4317 4435 497854155 497854273 1.700000e-51 215.0
28 TraesCS3D01G091500 chr2B 94.776 134 6 1 4311 4444 500277608 500277740 2.850000e-49 207.0
29 TraesCS3D01G091500 chr5A 91.704 663 34 14 5 660 9341787 9342435 0.000000e+00 900.0
30 TraesCS3D01G091500 chr5A 88.300 641 47 15 4 638 606523712 606523094 0.000000e+00 743.0
31 TraesCS3D01G091500 chr5A 89.266 177 15 3 3770 3945 210835276 210835103 1.310000e-52 219.0
32 TraesCS3D01G091500 chr5A 94.118 34 2 0 630 663 87409769 87409736 1.400000e-02 52.8
33 TraesCS3D01G091500 chr7D 90.427 679 43 15 4 663 254990643 254989968 0.000000e+00 874.0
34 TraesCS3D01G091500 chr7D 89.630 675 48 16 1 663 516990124 516990788 0.000000e+00 839.0
35 TraesCS3D01G091500 chr5D 89.403 670 51 16 1 663 497434333 497434989 0.000000e+00 826.0
36 TraesCS3D01G091500 chr5D 88.542 672 54 20 4 663 497216539 497215879 0.000000e+00 793.0
37 TraesCS3D01G091500 chr5D 90.588 170 15 1 3770 3939 152753935 152754103 2.830000e-54 224.0
38 TraesCS3D01G091500 chr5D 96.800 125 4 0 4311 4435 566048280 566048404 7.910000e-50 209.0
39 TraesCS3D01G091500 chr5B 88.542 672 55 18 1 662 581777057 581777716 0.000000e+00 795.0
40 TraesCS3D01G091500 chr5B 93.841 276 15 2 6063 6337 489347563 489347289 1.560000e-111 414.0
41 TraesCS3D01G091500 chr5B 90.588 170 14 2 3770 3939 192866600 192866767 2.830000e-54 224.0
42 TraesCS3D01G091500 chr5B 97.581 124 3 0 4312 4435 403545711 403545834 6.120000e-51 213.0
43 TraesCS3D01G091500 chr5B 98.333 120 2 0 4316 4435 678511308 678511189 2.200000e-50 211.0
44 TraesCS3D01G091500 chr5B 100.000 28 0 0 4274 4301 709341444 709341417 1.400000e-02 52.8
45 TraesCS3D01G091500 chr7A 82.563 671 64 21 2320 2982 593449583 593450208 6.870000e-150 542.0
46 TraesCS3D01G091500 chr7A 87.755 196 21 2 2982 3177 593450485 593450677 7.850000e-55 226.0
47 TraesCS3D01G091500 chr4B 93.116 276 17 2 6063 6337 307617440 307617166 3.380000e-108 403.0
48 TraesCS3D01G091500 chr4B 91.176 170 15 0 3770 3939 258771392 258771561 1.690000e-56 231.0
49 TraesCS3D01G091500 chr4B 90.173 173 14 3 3770 3941 285608134 285608304 1.020000e-53 222.0
50 TraesCS3D01G091500 chr4B 95.385 130 6 0 4306 4435 148210557 148210428 2.850000e-49 207.0
51 TraesCS3D01G091500 chr2D 92.899 169 11 1 3771 3939 388833837 388833670 2.170000e-60 244.0
52 TraesCS3D01G091500 chr2A 92.121 165 12 1 3770 3933 729163528 729163692 1.690000e-56 231.0
53 TraesCS3D01G091500 chr6B 94.853 136 6 1 4301 4435 179700553 179700418 2.200000e-50 211.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G091500 chr3D 46255045 46262824 7779 False 6928.00 12624 100.000000 1 7780 2 chr3D.!!$F2 7779
1 TraesCS3D01G091500 chr3A 57864615 57871611 6996 False 1907.80 4963 94.306800 945 7590 5 chr3A.!!$F4 6645
2 TraesCS3D01G091500 chr3A 652197528 652198694 1166 False 1533.00 1533 90.226000 5143 6337 1 chr3A.!!$F2 1194
3 TraesCS3D01G091500 chr3B 72456421 72463476 7055 False 1269.75 2854 89.200667 1117 7251 6 chr3B.!!$F1 6134
4 TraesCS3D01G091500 chr3B 580522146 580522732 586 True 370.00 582 87.582500 34 663 2 chr3B.!!$R2 629
5 TraesCS3D01G091500 chr6D 7624919 7626084 1165 False 1626.00 1626 91.646000 5143 6337 1 chr6D.!!$F1 1194
6 TraesCS3D01G091500 chr6D 103049923 103050588 665 False 872.00 872 90.519000 1 663 1 chr6D.!!$F2 662
7 TraesCS3D01G091500 chr7B 693047834 693048935 1101 True 1434.00 1434 90.018000 5210 6337 1 chr7B.!!$R1 1127
8 TraesCS3D01G091500 chr2B 704190570 704191651 1081 True 1327.00 1327 88.574000 5210 6337 1 chr2B.!!$R1 1127
9 TraesCS3D01G091500 chr5A 9341787 9342435 648 False 900.00 900 91.704000 5 660 1 chr5A.!!$F1 655
10 TraesCS3D01G091500 chr5A 606523094 606523712 618 True 743.00 743 88.300000 4 638 1 chr5A.!!$R3 634
11 TraesCS3D01G091500 chr7D 254989968 254990643 675 True 874.00 874 90.427000 4 663 1 chr7D.!!$R1 659
12 TraesCS3D01G091500 chr7D 516990124 516990788 664 False 839.00 839 89.630000 1 663 1 chr7D.!!$F1 662
13 TraesCS3D01G091500 chr5D 497434333 497434989 656 False 826.00 826 89.403000 1 663 1 chr5D.!!$F2 662
14 TraesCS3D01G091500 chr5D 497215879 497216539 660 True 793.00 793 88.542000 4 663 1 chr5D.!!$R1 659
15 TraesCS3D01G091500 chr5B 581777057 581777716 659 False 795.00 795 88.542000 1 662 1 chr5B.!!$F3 661
16 TraesCS3D01G091500 chr7A 593449583 593450677 1094 False 384.00 542 85.159000 2320 3177 2 chr7A.!!$F1 857

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
616 673 0.944386 CTAGCTCTCTCGCCTCTGTC 59.056 60.000 0.00 0.00 0.00 3.51 F
1092 1149 0.108804 TGCGGAGTACTAGCTGTTGC 60.109 55.000 19.50 7.22 40.05 4.17 F
1193 1791 0.325203 AGAGGGAGAACCAGAGGCTC 60.325 60.000 6.34 6.34 43.89 4.70 F
1237 1835 1.002430 CTGCAGCTCCAAGGTAAGACA 59.998 52.381 0.00 0.00 0.00 3.41 F
1371 1972 1.071699 TCACTAGTGTTGTTGGAGGGC 59.928 52.381 21.99 0.00 0.00 5.19 F
2168 2795 2.096248 GGGATATACTCTCCGCCTCAG 58.904 57.143 0.00 0.00 33.29 3.35 F
3663 4821 2.114616 ACAGAGCTGACCCTTATCAGG 58.885 52.381 4.21 0.00 45.35 3.86 F
4431 6344 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 F
5019 6937 0.891904 TACCTGTTTTGGAAGCGGGC 60.892 55.000 2.73 0.00 32.07 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1830 2449 2.731027 CGTCATGTGATCGAACGGAAGA 60.731 50.000 0.00 0.0 0.00 2.87 R
2407 3035 3.584848 ACATGAAGAAGGGACTAAGCACT 59.415 43.478 0.00 0.0 38.49 4.40 R
3172 4182 1.153127 ACGGCGGAACCTTGACAAA 60.153 52.632 13.24 0.0 35.61 2.83 R
3185 4195 2.048023 TACCACAGTAGGGACGGCG 61.048 63.158 4.80 4.8 0.00 6.46 R
3276 4309 3.496331 TCCCCAAGATTTCCTGACAAAC 58.504 45.455 0.00 0.0 0.00 2.93 R
3904 5816 1.480954 TCAGTCCGAGATAAGTTGGGC 59.519 52.381 0.00 0.0 0.00 5.36 R
4620 6534 0.959553 GCAGAGGATGATTGCATGGG 59.040 55.000 0.00 0.0 37.75 4.00 R
6194 8119 5.260424 TGGCATCTAAACAGGAATAAAGCA 58.740 37.500 0.00 0.0 0.00 3.91 R
7017 8969 0.834687 TTAGCCCGTCCCAGAAGTGT 60.835 55.000 0.00 0.0 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 8.703604 TTGAAACACGAACATATTTTTGGAAA 57.296 26.923 0.00 0.00 0.00 3.13
51 52 8.655651 AACACGAACATATTTTTGGAAATTGT 57.344 26.923 0.00 0.00 36.82 2.71
563 617 1.733041 CGGACACTGTAGCACGTGG 60.733 63.158 18.88 2.06 35.51 4.94
575 630 2.973945 AGCACGTGGGAAATCTCTAAC 58.026 47.619 18.88 0.00 0.00 2.34
596 651 2.512896 GCCGGCCCATCTTGATCT 59.487 61.111 18.11 0.00 0.00 2.75
604 661 2.899256 GCCCATCTTGATCTCTAGCTCT 59.101 50.000 0.00 0.00 0.00 4.09
616 673 0.944386 CTAGCTCTCTCGCCTCTGTC 59.056 60.000 0.00 0.00 0.00 3.51
1091 1148 1.630148 GTGCGGAGTACTAGCTGTTG 58.370 55.000 19.50 0.00 40.86 3.33
1092 1149 0.108804 TGCGGAGTACTAGCTGTTGC 60.109 55.000 19.50 7.22 40.05 4.17
1093 1150 4.600712 GTGCGGAGTACTAGCTGTTGCT 62.601 54.545 19.50 0.00 42.86 3.91
1103 1160 2.101700 GCTGTTGCTGTGCTATCCC 58.898 57.895 0.00 0.00 36.03 3.85
1104 1161 1.379642 GCTGTTGCTGTGCTATCCCC 61.380 60.000 0.00 0.00 36.03 4.81
1105 1162 0.749454 CTGTTGCTGTGCTATCCCCC 60.749 60.000 0.00 0.00 0.00 5.40
1159 1757 6.189677 TGGTATGTTTTGGTGAATTCGATC 57.810 37.500 0.04 0.00 0.00 3.69
1193 1791 0.325203 AGAGGGAGAACCAGAGGCTC 60.325 60.000 6.34 6.34 43.89 4.70
1237 1835 1.002430 CTGCAGCTCCAAGGTAAGACA 59.998 52.381 0.00 0.00 0.00 3.41
1278 1876 4.183865 TCATTCCTTTACGCAGATGACAG 58.816 43.478 0.00 0.00 0.00 3.51
1299 1897 3.615155 GCTTTGGCTGATTACTCCTCTT 58.385 45.455 0.00 0.00 35.22 2.85
1310 1908 5.880332 TGATTACTCCTCTTGCCATTGTTAC 59.120 40.000 0.00 0.00 0.00 2.50
1335 1936 2.287188 CGATGATTGCCATGCCACTTAC 60.287 50.000 0.00 0.00 35.17 2.34
1354 1955 2.960819 ACGGCTATTCTGTTCAGTCAC 58.039 47.619 0.00 0.00 0.00 3.67
1371 1972 1.071699 TCACTAGTGTTGTTGGAGGGC 59.928 52.381 21.99 0.00 0.00 5.19
1495 2114 5.531634 TGAGCTCTTTGCCAAGTAAATTTG 58.468 37.500 16.19 0.00 44.23 2.32
1500 2119 8.534496 AGCTCTTTGCCAAGTAAATTTGATAAT 58.466 29.630 0.00 0.00 44.23 1.28
1550 2169 6.039717 GTGTCTTCACATATGCATACCCAATT 59.960 38.462 8.99 0.00 43.37 2.32
1563 2182 6.658816 TGCATACCCAATTAGTATAATGGCAG 59.341 38.462 0.00 0.00 0.00 4.85
1577 2196 9.845740 AGTATAATGGCAGTAATGTAAATGTGA 57.154 29.630 0.00 0.00 0.00 3.58
1579 2198 8.752005 ATAATGGCAGTAATGTAAATGTGACT 57.248 30.769 0.00 0.00 0.00 3.41
1595 2214 6.609237 ATGTGACTACATCATGCACATAAC 57.391 37.500 10.07 0.00 44.00 1.89
1597 2216 5.936956 TGTGACTACATCATGCACATAACAA 59.063 36.000 0.00 0.00 40.28 2.83
1602 2221 8.692110 ACTACATCATGCACATAACAAATTTG 57.308 30.769 16.67 16.67 0.00 2.32
1613 2232 7.525854 GCACATAACAAATTTGAAGTTAAACGC 59.474 33.333 24.64 11.75 32.18 4.84
1656 2275 4.928661 ACTTGCATAAGTTTACGAGCTG 57.071 40.909 0.00 0.00 44.57 4.24
1661 2280 5.666462 TGCATAAGTTTACGAGCTGGAATA 58.334 37.500 1.44 0.00 0.00 1.75
1689 2308 6.546972 TGATGCTTGTTACGTAACATCAAA 57.453 33.333 34.66 23.94 44.72 2.69
1721 2340 6.371809 TTGTCGATGCTTTGTTAACTTTCT 57.628 33.333 7.22 0.00 0.00 2.52
1824 2443 3.191888 AGTAGAACCTCAGACCATGGT 57.808 47.619 19.89 19.89 35.29 3.55
1830 2449 2.621070 ACCTCAGACCATGGTGTAAGT 58.379 47.619 25.52 13.29 32.16 2.24
1874 2493 9.182933 GACGATATCTACTGAAAATCAAGTACC 57.817 37.037 0.34 0.00 0.00 3.34
1899 2518 6.237490 CGGTACACATTCTGAAACGAACTATC 60.237 42.308 0.00 0.00 0.00 2.08
1900 2519 6.588756 GGTACACATTCTGAAACGAACTATCA 59.411 38.462 0.00 0.00 0.00 2.15
2162 2789 7.563888 TGATATTAACGGGATATACTCTCCG 57.436 40.000 0.00 0.00 41.05 4.63
2168 2795 2.096248 GGGATATACTCTCCGCCTCAG 58.904 57.143 0.00 0.00 33.29 3.35
2169 2796 2.096248 GGATATACTCTCCGCCTCAGG 58.904 57.143 0.00 0.00 0.00 3.86
2293 2920 3.378427 GGCCAGAGGTGTGATTGTATTTC 59.622 47.826 0.00 0.00 0.00 2.17
2294 2921 3.378427 GCCAGAGGTGTGATTGTATTTCC 59.622 47.826 0.00 0.00 0.00 3.13
2331 2958 7.642071 ATGCTTAGTTTGCACTGTATTTTTG 57.358 32.000 0.00 0.00 43.59 2.44
2954 3592 5.620738 AGTACATGAGCACCTATGTGATT 57.379 39.130 0.00 0.00 42.18 2.57
3009 4010 9.513906 TTGACATCTTGAAATTAGGACAATACA 57.486 29.630 0.00 0.00 0.00 2.29
3119 4121 7.725367 TGTTAGGCCTCTATATAAAGGGGATA 58.275 38.462 9.68 0.00 39.81 2.59
3145 4155 6.273825 TCTATGAGGAACGAATTAAGCAGAC 58.726 40.000 0.00 0.00 0.00 3.51
3158 4168 7.415095 CGAATTAAGCAGACCATAAACCAATCA 60.415 37.037 0.00 0.00 0.00 2.57
3172 4182 9.293404 CATAAACCAATCATATTCATGGTCTCT 57.707 33.333 4.08 0.00 45.15 3.10
3181 4191 6.825213 TCATATTCATGGTCTCTTTGTCAAGG 59.175 38.462 0.00 0.00 32.61 3.61
3182 4192 4.437682 TTCATGGTCTCTTTGTCAAGGT 57.562 40.909 0.00 0.00 0.00 3.50
3185 4195 3.208747 TGGTCTCTTTGTCAAGGTTCC 57.791 47.619 0.00 0.00 0.00 3.62
3215 4225 5.452255 CCTACTGTGGTACCTATCCTACAA 58.548 45.833 14.36 0.00 0.00 2.41
3217 4227 4.944177 ACTGTGGTACCTATCCTACAACT 58.056 43.478 14.36 0.00 0.00 3.16
3222 4255 5.873164 GTGGTACCTATCCTACAACTTTGTG 59.127 44.000 14.36 0.00 42.31 3.33
3344 4377 5.187381 TCCATGATGCAATTACCATTGTTGT 59.813 36.000 0.00 0.00 41.84 3.32
3380 4413 6.169557 ACATTGGTACAGAAGACAGTAACA 57.830 37.500 0.00 0.00 42.39 2.41
3468 4501 5.554437 TGTGGGTGACTTGTAGTGAAATA 57.446 39.130 0.00 0.00 0.00 1.40
3473 4506 6.829298 TGGGTGACTTGTAGTGAAATAAAACA 59.171 34.615 0.00 0.00 0.00 2.83
3574 4732 3.896888 TCTCTGAAACAAAATGGGCATGT 59.103 39.130 0.00 0.00 0.00 3.21
3663 4821 2.114616 ACAGAGCTGACCCTTATCAGG 58.885 52.381 4.21 0.00 45.35 3.86
3707 4869 7.838079 ATTCAAGGCCAATGCTATGTTATTA 57.162 32.000 5.01 0.00 37.74 0.98
3708 4870 7.652524 TTCAAGGCCAATGCTATGTTATTAA 57.347 32.000 5.01 0.00 37.74 1.40
3815 5727 7.037586 AGGACTGGAATATCACCAAAGAACTAA 60.038 37.037 3.72 0.00 36.95 2.24
3818 5730 5.878116 TGGAATATCACCAAAGAACTAACCG 59.122 40.000 0.00 0.00 34.25 4.44
3904 5816 8.019656 TCTTATGGGTTTTAACTCTAGCCTAG 57.980 38.462 0.00 0.00 0.00 3.02
4320 6233 5.625311 GTGCTGTTCTGTGCTTATTTTGTAC 59.375 40.000 0.00 0.00 0.00 2.90
4321 6234 5.530915 TGCTGTTCTGTGCTTATTTTGTACT 59.469 36.000 0.00 0.00 0.00 2.73
4322 6235 6.080406 GCTGTTCTGTGCTTATTTTGTACTC 58.920 40.000 0.00 0.00 0.00 2.59
4323 6236 6.554334 TGTTCTGTGCTTATTTTGTACTCC 57.446 37.500 0.00 0.00 0.00 3.85
4324 6237 5.472137 TGTTCTGTGCTTATTTTGTACTCCC 59.528 40.000 0.00 0.00 0.00 4.30
4325 6238 5.499004 TCTGTGCTTATTTTGTACTCCCT 57.501 39.130 0.00 0.00 0.00 4.20
4326 6239 5.488341 TCTGTGCTTATTTTGTACTCCCTC 58.512 41.667 0.00 0.00 0.00 4.30
4327 6240 4.585879 TGTGCTTATTTTGTACTCCCTCC 58.414 43.478 0.00 0.00 0.00 4.30
4328 6241 3.621715 GTGCTTATTTTGTACTCCCTCCG 59.378 47.826 0.00 0.00 0.00 4.63
4329 6242 3.262405 TGCTTATTTTGTACTCCCTCCGT 59.738 43.478 0.00 0.00 0.00 4.69
4330 6243 3.869832 GCTTATTTTGTACTCCCTCCGTC 59.130 47.826 0.00 0.00 0.00 4.79
4331 6244 4.439968 CTTATTTTGTACTCCCTCCGTCC 58.560 47.826 0.00 0.00 0.00 4.79
4332 6245 1.719529 TTTTGTACTCCCTCCGTCCA 58.280 50.000 0.00 0.00 0.00 4.02
4333 6246 1.263356 TTTGTACTCCCTCCGTCCAG 58.737 55.000 0.00 0.00 0.00 3.86
4334 6247 0.406750 TTGTACTCCCTCCGTCCAGA 59.593 55.000 0.00 0.00 0.00 3.86
4335 6248 0.406750 TGTACTCCCTCCGTCCAGAA 59.593 55.000 0.00 0.00 0.00 3.02
4336 6249 1.203087 TGTACTCCCTCCGTCCAGAAA 60.203 52.381 0.00 0.00 0.00 2.52
4337 6250 2.108970 GTACTCCCTCCGTCCAGAAAT 58.891 52.381 0.00 0.00 0.00 2.17
4338 6251 2.544844 ACTCCCTCCGTCCAGAAATA 57.455 50.000 0.00 0.00 0.00 1.40
4339 6252 2.108970 ACTCCCTCCGTCCAGAAATAC 58.891 52.381 0.00 0.00 0.00 1.89
4340 6253 2.292323 ACTCCCTCCGTCCAGAAATACT 60.292 50.000 0.00 0.00 0.00 2.12
4341 6254 2.362717 CTCCCTCCGTCCAGAAATACTC 59.637 54.545 0.00 0.00 0.00 2.59
4342 6255 1.067212 CCCTCCGTCCAGAAATACTCG 59.933 57.143 0.00 0.00 0.00 4.18
4343 6256 1.749634 CCTCCGTCCAGAAATACTCGT 59.250 52.381 0.00 0.00 0.00 4.18
4344 6257 2.223525 CCTCCGTCCAGAAATACTCGTC 60.224 54.545 0.00 0.00 0.00 4.20
4345 6258 1.399440 TCCGTCCAGAAATACTCGTCG 59.601 52.381 0.00 0.00 0.00 5.12
4346 6259 1.533338 CCGTCCAGAAATACTCGTCGG 60.533 57.143 0.00 0.00 0.00 4.79
4347 6260 1.399440 CGTCCAGAAATACTCGTCGGA 59.601 52.381 0.00 0.00 0.00 4.55
4348 6261 2.539142 CGTCCAGAAATACTCGTCGGAG 60.539 54.545 0.00 0.00 46.13 4.63
4349 6262 2.022195 TCCAGAAATACTCGTCGGAGG 58.978 52.381 0.00 0.00 44.93 4.30
4350 6263 2.022195 CCAGAAATACTCGTCGGAGGA 58.978 52.381 0.00 0.00 44.93 3.71
4351 6264 2.426024 CCAGAAATACTCGTCGGAGGAA 59.574 50.000 1.73 0.00 44.93 3.36
4352 6265 3.068307 CCAGAAATACTCGTCGGAGGAAT 59.932 47.826 1.73 0.00 44.93 3.01
4353 6266 4.045104 CAGAAATACTCGTCGGAGGAATG 58.955 47.826 1.73 0.00 44.93 2.67
4354 6267 3.068307 AGAAATACTCGTCGGAGGAATGG 59.932 47.826 1.73 0.00 44.93 3.16
4355 6268 2.359981 ATACTCGTCGGAGGAATGGA 57.640 50.000 1.73 0.00 44.93 3.41
4356 6269 2.359981 TACTCGTCGGAGGAATGGAT 57.640 50.000 1.73 0.00 44.93 3.41
4357 6270 0.747255 ACTCGTCGGAGGAATGGATG 59.253 55.000 1.73 0.00 44.93 3.51
4358 6271 0.747255 CTCGTCGGAGGAATGGATGT 59.253 55.000 1.73 0.00 36.61 3.06
4359 6272 1.954382 CTCGTCGGAGGAATGGATGTA 59.046 52.381 1.73 0.00 36.61 2.29
4360 6273 2.558795 CTCGTCGGAGGAATGGATGTAT 59.441 50.000 1.73 0.00 36.61 2.29
4361 6274 2.557056 TCGTCGGAGGAATGGATGTATC 59.443 50.000 0.00 0.00 0.00 2.24
4362 6275 2.558795 CGTCGGAGGAATGGATGTATCT 59.441 50.000 0.00 0.00 0.00 1.98
4363 6276 3.756963 CGTCGGAGGAATGGATGTATCTA 59.243 47.826 0.00 0.00 0.00 1.98
4364 6277 4.142578 CGTCGGAGGAATGGATGTATCTAG 60.143 50.000 0.00 0.00 0.00 2.43
4365 6278 5.010933 GTCGGAGGAATGGATGTATCTAGA 58.989 45.833 0.00 0.00 0.00 2.43
4366 6279 5.654650 GTCGGAGGAATGGATGTATCTAGAT 59.345 44.000 10.73 10.73 0.00 1.98
4367 6280 5.654209 TCGGAGGAATGGATGTATCTAGATG 59.346 44.000 15.79 0.00 0.00 2.90
4368 6281 5.420421 CGGAGGAATGGATGTATCTAGATGT 59.580 44.000 15.79 1.25 0.00 3.06
4369 6282 6.603599 CGGAGGAATGGATGTATCTAGATGTA 59.396 42.308 15.79 4.44 0.00 2.29
4370 6283 7.286546 CGGAGGAATGGATGTATCTAGATGTAT 59.713 40.741 15.79 9.11 0.00 2.29
4371 6284 8.986991 GGAGGAATGGATGTATCTAGATGTATT 58.013 37.037 15.79 6.57 0.00 1.89
4409 6322 8.984891 ACATTCATTTTTATGCATTTCTTCGA 57.015 26.923 3.54 0.00 0.00 3.71
4410 6323 8.863049 ACATTCATTTTTATGCATTTCTTCGAC 58.137 29.630 3.54 0.00 0.00 4.20
4411 6324 8.862074 CATTCATTTTTATGCATTTCTTCGACA 58.138 29.630 3.54 0.00 0.00 4.35
4412 6325 8.809159 TTCATTTTTATGCATTTCTTCGACAA 57.191 26.923 3.54 0.00 0.00 3.18
4413 6326 8.451687 TCATTTTTATGCATTTCTTCGACAAG 57.548 30.769 3.54 0.00 0.00 3.16
4414 6327 8.081633 TCATTTTTATGCATTTCTTCGACAAGT 58.918 29.630 3.54 0.00 0.00 3.16
4415 6328 9.340695 CATTTTTATGCATTTCTTCGACAAGTA 57.659 29.630 3.54 0.00 0.00 2.24
4417 6330 9.906660 TTTTTATGCATTTCTTCGACAAGTATT 57.093 25.926 3.54 0.00 0.00 1.89
4418 6331 9.906660 TTTTATGCATTTCTTCGACAAGTATTT 57.093 25.926 3.54 0.00 0.00 1.40
4419 6332 9.554724 TTTATGCATTTCTTCGACAAGTATTTC 57.445 29.630 3.54 0.00 0.00 2.17
4420 6333 5.938322 TGCATTTCTTCGACAAGTATTTCC 58.062 37.500 0.00 0.00 0.00 3.13
4421 6334 5.022021 GCATTTCTTCGACAAGTATTTCCG 58.978 41.667 0.00 0.00 0.00 4.30
4422 6335 5.560148 CATTTCTTCGACAAGTATTTCCGG 58.440 41.667 0.00 0.00 0.00 5.14
4423 6336 4.524316 TTCTTCGACAAGTATTTCCGGA 57.476 40.909 0.00 0.00 0.00 5.14
4424 6337 3.841643 TCTTCGACAAGTATTTCCGGAC 58.158 45.455 1.83 0.00 0.00 4.79
4425 6338 2.267188 TCGACAAGTATTTCCGGACG 57.733 50.000 1.83 0.27 0.00 4.79
4426 6339 1.135315 TCGACAAGTATTTCCGGACGG 60.135 52.381 1.83 3.96 0.00 4.79
4427 6340 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
4428 6341 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
4429 6342 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4430 6343 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4431 6344 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
4465 6379 9.356433 GTTTTTAAAGTTAGCCACAAAAGTACA 57.644 29.630 0.00 0.00 0.00 2.90
4493 6407 8.515473 AAAGCGGATCAAATAAACACTAAAAC 57.485 30.769 0.00 0.00 0.00 2.43
4506 6420 4.682787 ACACTAAAACAGGAAAAAGCTGC 58.317 39.130 0.00 0.00 0.00 5.25
4608 6522 5.509716 TTCAAAGTCAGACGTCTCACTAA 57.490 39.130 23.03 10.75 0.00 2.24
4620 6534 4.982916 ACGTCTCACTAACATCTTTCACAC 59.017 41.667 0.00 0.00 0.00 3.82
4812 6729 4.415881 TTTGGTTGCTGAGTGTAAGAGA 57.584 40.909 0.00 0.00 0.00 3.10
4949 6867 8.066612 TCCTGAGTAATTGGAATTTGATTTCC 57.933 34.615 0.00 0.00 44.60 3.13
5019 6937 0.891904 TACCTGTTTTGGAAGCGGGC 60.892 55.000 2.73 0.00 32.07 6.13
5020 6938 1.903404 CCTGTTTTGGAAGCGGGCT 60.903 57.895 0.00 0.00 0.00 5.19
5038 6956 2.876550 GGCTTTGGATGTATCGGTAACC 59.123 50.000 0.00 0.00 0.00 2.85
5059 6977 4.702131 ACCATGTTAGCCTTGATTTCTGTC 59.298 41.667 0.00 0.00 0.00 3.51
5297 7215 9.817365 CTTCTTTCTAGTTACAAACATGTGATG 57.183 33.333 0.00 4.60 0.00 3.07
5924 7847 6.760298 TGAGATTTTAGATCACTGTGAGCATC 59.240 38.462 25.77 18.83 34.77 3.91
5968 7891 5.447624 TTATGCATGCATCCTTGAGAATG 57.552 39.130 35.35 0.00 37.82 2.67
6194 8119 6.530120 TGTGTGACATAACTAATTCCAGTGT 58.470 36.000 0.00 0.00 0.00 3.55
6406 8332 2.680339 GCAGAGCCTAATCCACTTGAAC 59.320 50.000 0.00 0.00 0.00 3.18
6518 8444 5.921976 TCGTCTTTACATCTTTTACAAGCGA 59.078 36.000 0.00 0.00 0.00 4.93
6520 8446 6.515340 CGTCTTTACATCTTTTACAAGCGAAC 59.485 38.462 0.00 0.00 0.00 3.95
6619 8545 9.181061 TCCAATGATGTATGCATAATTATCCTG 57.819 33.333 8.28 11.56 34.67 3.86
6626 8552 6.997476 TGTATGCATAATTATCCTGTTCAGCA 59.003 34.615 8.28 0.37 0.00 4.41
6677 8603 4.764823 ACGCATTTGATTTCAACCCTCTTA 59.235 37.500 0.00 0.00 35.28 2.10
6880 8806 6.455360 TCAATCCAGCATCAAGGTAAATTC 57.545 37.500 0.00 0.00 0.00 2.17
6928 8878 5.797051 AGAAATATGCAAACAAATGCCTGT 58.203 33.333 0.00 0.00 45.83 4.00
6948 8898 3.501828 TGTCTGCATGCTCACGTAATTTT 59.498 39.130 20.33 0.00 0.00 1.82
6949 8899 4.693095 TGTCTGCATGCTCACGTAATTTTA 59.307 37.500 20.33 0.00 0.00 1.52
6950 8900 5.022021 GTCTGCATGCTCACGTAATTTTAC 58.978 41.667 20.33 0.00 0.00 2.01
6952 8902 5.411361 TCTGCATGCTCACGTAATTTTACTT 59.589 36.000 20.33 0.00 0.00 2.24
6954 8904 7.279981 TCTGCATGCTCACGTAATTTTACTTAT 59.720 33.333 20.33 0.00 0.00 1.73
6955 8905 8.426881 TGCATGCTCACGTAATTTTACTTATA 57.573 30.769 20.33 0.00 0.00 0.98
6956 8906 8.884726 TGCATGCTCACGTAATTTTACTTATAA 58.115 29.630 20.33 0.00 0.00 0.98
6957 8907 9.710979 GCATGCTCACGTAATTTTACTTATAAA 57.289 29.630 11.37 0.00 0.00 1.40
7002 8954 4.630940 CAGAACATCTCTCCTTGAAGCTTC 59.369 45.833 19.89 19.89 29.07 3.86
7017 8969 6.156748 TGAAGCTTCTGTTCTTACTGTGTA 57.843 37.500 26.09 0.00 0.00 2.90
7044 8996 1.698532 TGGGACGGGCTAAAGTGTTAA 59.301 47.619 0.00 0.00 0.00 2.01
7100 9052 5.696724 TCGTTCAGATCTCCTTCAAGTTTTC 59.303 40.000 0.00 0.00 0.00 2.29
7153 9105 4.629200 CAGCCTTCTGACAGAACTTGATAC 59.371 45.833 13.99 0.00 42.95 2.24
7155 9107 4.618460 GCCTTCTGACAGAACTTGATACGA 60.618 45.833 13.99 0.00 29.89 3.43
7156 9108 5.655488 CCTTCTGACAGAACTTGATACGAT 58.345 41.667 13.99 0.00 29.89 3.73
7255 9472 2.362397 TGGCGACCTTTTATTTTGCACA 59.638 40.909 0.00 0.00 0.00 4.57
7292 9510 0.179076 CATGTGATGGCTGGCTCGTA 60.179 55.000 2.00 0.00 0.00 3.43
7293 9511 0.105593 ATGTGATGGCTGGCTCGTAG 59.894 55.000 2.00 0.00 0.00 3.51
7386 9608 4.759693 TCGTCTGGCTGTAACAATCAAATT 59.240 37.500 0.00 0.00 0.00 1.82
7390 9612 6.583806 GTCTGGCTGTAACAATCAAATTGAAG 59.416 38.462 0.00 0.00 42.83 3.02
7399 9621 9.118236 GTAACAATCAAATTGAAGCTAGAACAC 57.882 33.333 0.00 0.00 42.83 3.32
7406 9628 3.423539 TGAAGCTAGAACACCAATGCT 57.576 42.857 0.00 0.00 0.00 3.79
7433 9655 2.433868 TGAGACAAGTAGTTCACCGC 57.566 50.000 0.00 0.00 0.00 5.68
7445 9667 3.260483 CACCGCATCGAGCAGAGC 61.260 66.667 7.47 0.00 46.13 4.09
7449 9671 4.212913 GCATCGAGCAGAGCCGGA 62.213 66.667 5.05 0.00 44.79 5.14
7454 9676 0.036388 TCGAGCAGAGCCGGAAAAAT 60.036 50.000 5.05 0.00 0.00 1.82
7462 9684 7.307751 CGAGCAGAGCCGGAAAAATAAAATATA 60.308 37.037 5.05 0.00 0.00 0.86
7463 9685 8.409358 AGCAGAGCCGGAAAAATAAAATATAT 57.591 30.769 5.05 0.00 0.00 0.86
7464 9686 9.515226 AGCAGAGCCGGAAAAATAAAATATATA 57.485 29.630 5.05 0.00 0.00 0.86
7465 9687 9.774742 GCAGAGCCGGAAAAATAAAATATATAG 57.225 33.333 5.05 0.00 0.00 1.31
7467 9689 9.462606 AGAGCCGGAAAAATAAAATATATAGGG 57.537 33.333 5.05 0.00 0.00 3.53
7468 9690 8.063200 AGCCGGAAAAATAAAATATATAGGGC 57.937 34.615 5.05 0.00 0.00 5.19
7469 9691 7.672239 AGCCGGAAAAATAAAATATATAGGGCA 59.328 33.333 5.05 0.00 35.84 5.36
7473 9695 9.516314 GGAAAAATAAAATATATAGGGCATCGC 57.484 33.333 0.00 0.00 0.00 4.58
7477 9699 9.561069 AAATAAAATATATAGGGCATCGCTAGG 57.439 33.333 0.00 0.00 32.65 3.02
7478 9700 4.608948 AATATATAGGGCATCGCTAGGC 57.391 45.455 0.00 0.00 32.65 3.93
7491 9713 1.141881 CTAGGCGTTGGCTGATCGT 59.858 57.895 2.81 0.00 39.30 3.73
7499 9721 3.838271 GGCTGATCGTCGCAGGGA 61.838 66.667 0.00 0.00 34.00 4.20
7517 9739 2.835431 CCAGATCGGTCGCCTCCT 60.835 66.667 0.00 0.00 0.00 3.69
7518 9740 2.415010 CAGATCGGTCGCCTCCTG 59.585 66.667 0.00 0.00 0.00 3.86
7521 9743 4.148825 ATCGGTCGCCTCCTGCAC 62.149 66.667 0.00 0.00 41.33 4.57
7550 9772 0.451783 GGTTTGCTGATAGCCGTTGG 59.548 55.000 0.00 0.00 41.51 3.77
7559 9781 0.469917 ATAGCCGTTGGATCACCCTG 59.530 55.000 0.00 0.00 35.38 4.45
7572 9799 0.035458 CACCCTGCCGTTCTCTTCTT 59.965 55.000 0.00 0.00 0.00 2.52
7590 9817 2.114838 GCATCTCATCCAGCCCCC 59.885 66.667 0.00 0.00 0.00 5.40
7604 9831 2.825982 CCCCCAACTCACGTGACA 59.174 61.111 15.76 0.00 0.00 3.58
7605 9832 1.147376 CCCCCAACTCACGTGACAA 59.853 57.895 15.76 0.00 0.00 3.18
7606 9833 0.464735 CCCCCAACTCACGTGACAAA 60.465 55.000 15.76 0.00 0.00 2.83
7607 9834 0.661020 CCCCAACTCACGTGACAAAC 59.339 55.000 15.76 0.00 0.00 2.93
7631 9858 3.065575 GCGGTAGCATGCTTGTAGT 57.934 52.632 28.02 2.18 44.35 2.73
7632 9859 0.652592 GCGGTAGCATGCTTGTAGTG 59.347 55.000 28.02 11.20 44.35 2.74
7633 9860 2.007049 GCGGTAGCATGCTTGTAGTGT 61.007 52.381 28.02 0.44 44.35 3.55
7634 9861 1.927174 CGGTAGCATGCTTGTAGTGTC 59.073 52.381 28.02 5.95 0.00 3.67
7635 9862 1.927174 GGTAGCATGCTTGTAGTGTCG 59.073 52.381 28.02 0.00 0.00 4.35
7636 9863 2.607187 GTAGCATGCTTGTAGTGTCGT 58.393 47.619 28.02 0.00 0.00 4.34
7637 9864 2.169832 AGCATGCTTGTAGTGTCGTT 57.830 45.000 16.30 0.00 0.00 3.85
7638 9865 1.800586 AGCATGCTTGTAGTGTCGTTG 59.199 47.619 16.30 0.00 0.00 4.10
7639 9866 1.725931 GCATGCTTGTAGTGTCGTTGC 60.726 52.381 11.37 0.00 0.00 4.17
7640 9867 1.135972 CATGCTTGTAGTGTCGTTGCC 60.136 52.381 0.00 0.00 0.00 4.52
7641 9868 0.882927 TGCTTGTAGTGTCGTTGCCC 60.883 55.000 0.00 0.00 0.00 5.36
7642 9869 1.897398 GCTTGTAGTGTCGTTGCCCG 61.897 60.000 0.00 0.00 38.13 6.13
7643 9870 0.599204 CTTGTAGTGTCGTTGCCCGT 60.599 55.000 0.00 0.00 37.94 5.28
7644 9871 0.672889 TTGTAGTGTCGTTGCCCGTA 59.327 50.000 0.00 0.00 37.94 4.02
7645 9872 0.889994 TGTAGTGTCGTTGCCCGTAT 59.110 50.000 0.00 0.00 37.94 3.06
7646 9873 1.135315 TGTAGTGTCGTTGCCCGTATC 60.135 52.381 0.00 0.00 37.94 2.24
7647 9874 1.135315 GTAGTGTCGTTGCCCGTATCA 60.135 52.381 0.00 0.00 37.94 2.15
7648 9875 0.319083 AGTGTCGTTGCCCGTATCAA 59.681 50.000 0.00 0.00 37.94 2.57
7649 9876 0.441145 GTGTCGTTGCCCGTATCAAC 59.559 55.000 0.00 0.00 40.13 3.18
7660 9887 2.172593 CGTATCAACGTTTGCATGGG 57.827 50.000 0.00 0.00 44.21 4.00
7661 9888 1.466950 CGTATCAACGTTTGCATGGGT 59.533 47.619 0.00 0.00 44.21 4.51
7662 9889 2.095466 CGTATCAACGTTTGCATGGGTT 60.095 45.455 0.00 0.00 44.21 4.11
7663 9890 2.437200 ATCAACGTTTGCATGGGTTG 57.563 45.000 14.57 14.57 40.73 3.77
7672 9899 4.850193 CATGGGTTGCTGGTTCCT 57.150 55.556 0.00 0.00 0.00 3.36
7673 9900 2.269978 CATGGGTTGCTGGTTCCTG 58.730 57.895 0.00 0.00 0.00 3.86
7674 9901 1.607467 ATGGGTTGCTGGTTCCTGC 60.607 57.895 12.64 12.64 0.00 4.85
7675 9902 2.085343 ATGGGTTGCTGGTTCCTGCT 62.085 55.000 18.54 0.00 33.11 4.24
7676 9903 2.270986 GGGTTGCTGGTTCCTGCTG 61.271 63.158 18.54 0.00 33.11 4.41
7677 9904 1.228245 GGTTGCTGGTTCCTGCTGA 60.228 57.895 18.54 7.48 33.11 4.26
7678 9905 0.823356 GGTTGCTGGTTCCTGCTGAA 60.823 55.000 18.54 5.99 33.11 3.02
7685 9912 3.588277 GTTCCTGCTGAACGTCTCA 57.412 52.632 0.00 0.00 43.65 3.27
7686 9913 1.140816 GTTCCTGCTGAACGTCTCAC 58.859 55.000 0.00 0.00 43.65 3.51
7687 9914 0.033504 TTCCTGCTGAACGTCTCACC 59.966 55.000 0.00 0.00 0.00 4.02
7688 9915 1.734477 CCTGCTGAACGTCTCACCG 60.734 63.158 0.00 0.00 0.00 4.94
7689 9916 1.734477 CTGCTGAACGTCTCACCGG 60.734 63.158 0.00 0.00 0.00 5.28
7690 9917 2.338984 GCTGAACGTCTCACCGGT 59.661 61.111 0.00 0.00 0.00 5.28
7691 9918 1.733399 GCTGAACGTCTCACCGGTC 60.733 63.158 2.59 0.00 44.68 4.79
7692 9919 1.957562 CTGAACGTCTCACCGGTCT 59.042 57.895 2.59 0.00 44.72 3.85
7693 9920 0.109689 CTGAACGTCTCACCGGTCTC 60.110 60.000 2.59 0.00 44.72 3.36
7694 9921 0.820482 TGAACGTCTCACCGGTCTCA 60.820 55.000 2.59 0.00 44.72 3.27
7695 9922 0.109689 GAACGTCTCACCGGTCTCAG 60.110 60.000 2.59 0.32 41.28 3.35
7696 9923 0.536687 AACGTCTCACCGGTCTCAGA 60.537 55.000 2.59 3.30 0.00 3.27
7697 9924 0.536687 ACGTCTCACCGGTCTCAGAA 60.537 55.000 2.59 0.00 0.00 3.02
7698 9925 0.811915 CGTCTCACCGGTCTCAGAAT 59.188 55.000 2.59 0.00 0.00 2.40
7699 9926 1.202582 CGTCTCACCGGTCTCAGAATT 59.797 52.381 2.59 0.00 0.00 2.17
7700 9927 2.611518 GTCTCACCGGTCTCAGAATTG 58.388 52.381 2.59 0.00 0.00 2.32
7701 9928 2.028930 GTCTCACCGGTCTCAGAATTGT 60.029 50.000 2.59 0.00 0.00 2.71
7702 9929 2.029020 TCTCACCGGTCTCAGAATTGTG 60.029 50.000 2.59 0.00 0.00 3.33
7703 9930 1.967779 TCACCGGTCTCAGAATTGTGA 59.032 47.619 2.59 5.05 0.00 3.58
7704 9931 2.367241 TCACCGGTCTCAGAATTGTGAA 59.633 45.455 2.59 0.00 0.00 3.18
7705 9932 3.007940 TCACCGGTCTCAGAATTGTGAAT 59.992 43.478 2.59 0.00 0.00 2.57
7706 9933 3.125829 CACCGGTCTCAGAATTGTGAATG 59.874 47.826 2.59 0.00 0.00 2.67
7707 9934 2.679837 CCGGTCTCAGAATTGTGAATGG 59.320 50.000 6.75 2.79 0.00 3.16
7708 9935 2.679837 CGGTCTCAGAATTGTGAATGGG 59.320 50.000 6.75 0.00 0.00 4.00
7709 9936 2.424956 GGTCTCAGAATTGTGAATGGGC 59.575 50.000 6.75 0.00 0.00 5.36
7710 9937 2.096496 GTCTCAGAATTGTGAATGGGCG 59.904 50.000 6.75 0.00 0.00 6.13
7711 9938 2.086869 CTCAGAATTGTGAATGGGCGT 58.913 47.619 6.75 0.00 0.00 5.68
7712 9939 1.811965 TCAGAATTGTGAATGGGCGTG 59.188 47.619 2.20 0.00 0.00 5.34
7713 9940 0.527565 AGAATTGTGAATGGGCGTGC 59.472 50.000 0.00 0.00 0.00 5.34
7714 9941 0.458370 GAATTGTGAATGGGCGTGCC 60.458 55.000 1.16 1.16 0.00 5.01
7715 9942 2.211619 AATTGTGAATGGGCGTGCCG 62.212 55.000 4.53 0.00 36.85 5.69
7725 9952 2.664851 GCGTGCCGGCATATGCTA 60.665 61.111 35.23 3.73 41.70 3.49
7726 9953 2.954753 GCGTGCCGGCATATGCTAC 61.955 63.158 35.23 17.01 41.70 3.58
7727 9954 2.317609 CGTGCCGGCATATGCTACC 61.318 63.158 35.23 16.18 41.70 3.18
7728 9955 1.071471 GTGCCGGCATATGCTACCT 59.929 57.895 35.23 0.00 41.70 3.08
7729 9956 0.535102 GTGCCGGCATATGCTACCTT 60.535 55.000 35.23 0.00 41.70 3.50
7730 9957 0.250295 TGCCGGCATATGCTACCTTC 60.250 55.000 29.03 8.36 41.70 3.46
7731 9958 1.291877 GCCGGCATATGCTACCTTCG 61.292 60.000 26.12 18.88 41.70 3.79
7732 9959 0.033504 CCGGCATATGCTACCTTCGT 59.966 55.000 26.12 0.00 41.70 3.85
7733 9960 1.419374 CGGCATATGCTACCTTCGTC 58.581 55.000 26.12 6.22 41.70 4.20
7734 9961 1.797025 GGCATATGCTACCTTCGTCC 58.203 55.000 26.12 2.70 41.70 4.79
7735 9962 1.419374 GCATATGCTACCTTCGTCCG 58.581 55.000 20.64 0.00 38.21 4.79
7736 9963 1.935300 GCATATGCTACCTTCGTCCGG 60.935 57.143 20.64 0.00 38.21 5.14
7737 9964 0.966920 ATATGCTACCTTCGTCCGGG 59.033 55.000 0.00 0.00 0.00 5.73
7738 9965 0.396139 TATGCTACCTTCGTCCGGGT 60.396 55.000 0.00 0.00 39.40 5.28
7739 9966 1.262640 ATGCTACCTTCGTCCGGGTT 61.263 55.000 0.00 0.00 37.07 4.11
7740 9967 1.294459 GCTACCTTCGTCCGGGTTT 59.706 57.895 0.00 0.00 37.07 3.27
7741 9968 0.532115 GCTACCTTCGTCCGGGTTTA 59.468 55.000 0.00 0.00 37.07 2.01
7742 9969 1.137675 GCTACCTTCGTCCGGGTTTAT 59.862 52.381 0.00 0.00 37.07 1.40
7743 9970 2.419159 GCTACCTTCGTCCGGGTTTATT 60.419 50.000 0.00 0.00 37.07 1.40
7744 9971 3.181476 GCTACCTTCGTCCGGGTTTATTA 60.181 47.826 0.00 0.00 37.07 0.98
7745 9972 3.979101 ACCTTCGTCCGGGTTTATTAA 57.021 42.857 0.00 0.00 30.80 1.40
7746 9973 3.865446 ACCTTCGTCCGGGTTTATTAAG 58.135 45.455 0.00 0.00 30.80 1.85
7747 9974 3.200483 CCTTCGTCCGGGTTTATTAAGG 58.800 50.000 0.00 2.02 0.00 2.69
7748 9975 3.118665 CCTTCGTCCGGGTTTATTAAGGA 60.119 47.826 0.00 0.00 35.34 3.36
7749 9976 3.525268 TCGTCCGGGTTTATTAAGGAC 57.475 47.619 0.00 3.07 45.68 3.85
7750 9977 2.168313 TCGTCCGGGTTTATTAAGGACC 59.832 50.000 0.00 0.47 46.23 4.46
7751 9978 2.742856 CGTCCGGGTTTATTAAGGACCC 60.743 54.545 0.00 11.77 46.23 4.46
7760 9987 7.949690 GGTTTATTAAGGACCCACTTGTATT 57.050 36.000 0.00 0.00 32.02 1.89
7761 9988 8.357290 GGTTTATTAAGGACCCACTTGTATTT 57.643 34.615 0.00 0.00 32.02 1.40
7762 9989 8.809066 GGTTTATTAAGGACCCACTTGTATTTT 58.191 33.333 0.00 0.00 32.02 1.82
7763 9990 9.850628 GTTTATTAAGGACCCACTTGTATTTTC 57.149 33.333 0.00 0.00 32.02 2.29
7764 9991 6.753107 ATTAAGGACCCACTTGTATTTTCG 57.247 37.500 0.00 0.00 32.02 3.46
7765 9992 3.067684 AGGACCCACTTGTATTTTCGG 57.932 47.619 0.00 0.00 0.00 4.30
7766 9993 2.374170 AGGACCCACTTGTATTTTCGGT 59.626 45.455 0.00 0.00 0.00 4.69
7767 9994 2.745821 GGACCCACTTGTATTTTCGGTC 59.254 50.000 0.00 0.00 38.04 4.79
7768 9995 3.404899 GACCCACTTGTATTTTCGGTCA 58.595 45.455 0.00 0.00 38.52 4.02
7769 9996 3.816523 GACCCACTTGTATTTTCGGTCAA 59.183 43.478 0.00 0.00 38.52 3.18
7770 9997 4.208746 ACCCACTTGTATTTTCGGTCAAA 58.791 39.130 0.00 0.00 0.00 2.69
7771 9998 4.037089 ACCCACTTGTATTTTCGGTCAAAC 59.963 41.667 0.00 0.00 0.00 2.93
7772 9999 4.277423 CCCACTTGTATTTTCGGTCAAACT 59.723 41.667 0.00 0.00 0.00 2.66
7773 10000 5.221165 CCCACTTGTATTTTCGGTCAAACTT 60.221 40.000 0.00 0.00 0.00 2.66
7774 10001 6.270064 CCACTTGTATTTTCGGTCAAACTTT 58.730 36.000 0.00 0.00 0.00 2.66
7775 10002 6.198216 CCACTTGTATTTTCGGTCAAACTTTG 59.802 38.462 0.00 0.00 0.00 2.77
7776 10003 6.970043 CACTTGTATTTTCGGTCAAACTTTGA 59.030 34.615 0.00 0.00 37.33 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 127 4.453339 CATTTTCAAAATTTGTTCGCCGG 58.547 39.130 5.56 0.00 0.00 6.13
125 128 4.453339 CCATTTTCAAAATTTGTTCGCCG 58.547 39.130 5.56 0.00 0.00 6.46
563 617 1.475213 CCGGCCCAGTTAGAGATTTCC 60.475 57.143 0.00 0.00 0.00 3.13
596 651 0.544223 ACAGAGGCGAGAGAGCTAGA 59.456 55.000 0.00 0.00 37.29 2.43
604 661 2.701780 GCTTCGGACAGAGGCGAGA 61.702 63.158 0.00 0.00 42.11 4.04
946 1003 1.661341 CAAGAGAAGGGCCTCGATTG 58.339 55.000 6.46 6.42 38.19 2.67
953 1010 4.803908 CCCGGCAAGAGAAGGGCC 62.804 72.222 0.00 0.00 44.27 5.80
1081 1138 2.419297 GGATAGCACAGCAACAGCTAGT 60.419 50.000 0.00 0.00 43.33 2.57
1110 1167 0.674895 CAAAAGCACGAGAGAGGGGG 60.675 60.000 0.00 0.00 0.00 5.40
1111 1168 0.674895 CCAAAAGCACGAGAGAGGGG 60.675 60.000 0.00 0.00 0.00 4.79
1112 1169 0.035458 ACCAAAAGCACGAGAGAGGG 59.965 55.000 0.00 0.00 0.00 4.30
1113 1170 1.884235 AACCAAAAGCACGAGAGAGG 58.116 50.000 0.00 0.00 0.00 3.69
1114 1171 5.385617 CAATTAACCAAAAGCACGAGAGAG 58.614 41.667 0.00 0.00 0.00 3.20
1115 1172 4.215399 CCAATTAACCAAAAGCACGAGAGA 59.785 41.667 0.00 0.00 0.00 3.10
1159 1757 1.834263 CCCTCTCCAACTCCTAACCAG 59.166 57.143 0.00 0.00 0.00 4.00
1193 1791 0.609131 AGGTGGAAACAATCTGGGCG 60.609 55.000 0.00 0.00 46.06 6.13
1237 1835 2.687935 TGAAACCGCTTGAAGCTTCTTT 59.312 40.909 26.09 16.71 39.60 2.52
1278 1876 3.274095 AGAGGAGTAATCAGCCAAAGC 57.726 47.619 0.00 0.00 40.32 3.51
1299 1897 2.689646 TCATCGTTCGTAACAATGGCA 58.310 42.857 0.00 0.00 0.00 4.92
1310 1908 0.317269 GGCATGGCAATCATCGTTCG 60.317 55.000 15.47 0.00 32.92 3.95
1335 1936 3.238108 AGTGACTGAACAGAATAGCCG 57.762 47.619 8.87 0.00 0.00 5.52
1354 1955 1.347707 TCTGCCCTCCAACAACACTAG 59.652 52.381 0.00 0.00 0.00 2.57
1563 2182 8.611757 TGCATGATGTAGTCACATTTACATTAC 58.388 33.333 0.00 0.00 45.58 1.89
1577 2196 8.522003 TCAAATTTGTTATGTGCATGATGTAGT 58.478 29.630 17.47 0.00 0.00 2.73
1579 2198 9.356433 CTTCAAATTTGTTATGTGCATGATGTA 57.644 29.630 17.47 0.00 0.00 2.29
1597 2216 9.308318 ACAATTAACAGCGTTTAACTTCAAATT 57.692 25.926 0.00 0.00 0.00 1.82
1602 2221 8.363029 GCATAACAATTAACAGCGTTTAACTTC 58.637 33.333 0.00 0.00 0.00 3.01
1613 2232 8.800972 CAAGTATTGCTGCATAACAATTAACAG 58.199 33.333 1.84 0.00 40.39 3.16
1650 2269 3.562973 AGCATCAACATTATTCCAGCTCG 59.437 43.478 0.00 0.00 0.00 5.03
1654 2273 6.688385 CGTAACAAGCATCAACATTATTCCAG 59.312 38.462 0.00 0.00 0.00 3.86
1656 2275 6.551736 ACGTAACAAGCATCAACATTATTCC 58.448 36.000 0.00 0.00 0.00 3.01
1661 2280 6.307031 TGTTACGTAACAAGCATCAACATT 57.693 33.333 33.00 0.00 42.66 2.71
1689 2308 9.853555 TTAACAAAGCATCGACAAATCAATAAT 57.146 25.926 0.00 0.00 0.00 1.28
1721 2340 9.592196 ACGGTATATTGTCCTCCTATAAAAGTA 57.408 33.333 0.00 0.00 0.00 2.24
1736 2355 7.068348 TCTCAGCTAAAGAAGACGGTATATTGT 59.932 37.037 0.00 0.00 0.00 2.71
1765 2384 6.992123 ACATTCTTCTGTACTTGTTGATCACA 59.008 34.615 0.00 0.00 0.00 3.58
1824 2443 3.253921 TGTGATCGAACGGAAGACTTACA 59.746 43.478 0.00 0.00 0.00 2.41
1830 2449 2.731027 CGTCATGTGATCGAACGGAAGA 60.731 50.000 0.00 0.00 0.00 2.87
1874 2493 3.739300 AGTTCGTTTCAGAATGTGTACCG 59.261 43.478 0.00 0.00 37.40 4.02
1899 2518 9.926751 CAGACAGAAAGCAAAGTTATGTATATG 57.073 33.333 0.00 0.00 30.88 1.78
1900 2519 9.890629 TCAGACAGAAAGCAAAGTTATGTATAT 57.109 29.630 0.00 0.00 30.88 0.86
1921 2540 4.384247 GCATATGCACGAGTTAGATCAGAC 59.616 45.833 22.84 0.00 41.59 3.51
1948 2567 6.601613 CCCCTTTAACATTGCACTATAAGTCA 59.398 38.462 0.00 0.00 0.00 3.41
2162 2789 5.415701 TCACTGATTTTCAAATACCTGAGGC 59.584 40.000 0.00 0.00 0.00 4.70
2293 2920 4.074970 ACTAAGCATTGACTTCCTGTTGG 58.925 43.478 0.00 0.00 0.00 3.77
2294 2921 5.695851 AACTAAGCATTGACTTCCTGTTG 57.304 39.130 0.00 0.00 0.00 3.33
2331 2958 8.796278 GTGTCAGTAGAATTTCACGTAATAGTC 58.204 37.037 0.00 0.00 0.00 2.59
2407 3035 3.584848 ACATGAAGAAGGGACTAAGCACT 59.415 43.478 0.00 0.00 38.49 4.40
2873 3505 6.851330 CCTTCAAAAGACACGATTTCTGTTAC 59.149 38.462 0.00 0.00 0.00 2.50
2954 3592 7.926018 ACATAATTGTGACATTACAGCGATCTA 59.074 33.333 9.40 0.00 33.85 1.98
3119 4121 6.096987 TCTGCTTAATTCGTTCCTCATAGAGT 59.903 38.462 0.00 0.00 0.00 3.24
3145 4155 8.413309 AGACCATGAATATGATTGGTTTATGG 57.587 34.615 0.00 0.00 42.41 2.74
3158 4168 6.725364 ACCTTGACAAAGAGACCATGAATAT 58.275 36.000 0.00 0.00 35.19 1.28
3172 4182 1.153127 ACGGCGGAACCTTGACAAA 60.153 52.632 13.24 0.00 35.61 2.83
3181 4191 2.183555 CAGTAGGGACGGCGGAAC 59.816 66.667 13.24 1.76 0.00 3.62
3182 4192 2.283388 ACAGTAGGGACGGCGGAA 60.283 61.111 13.24 0.00 0.00 4.30
3185 4195 2.048023 TACCACAGTAGGGACGGCG 61.048 63.158 4.80 4.80 0.00 6.46
3276 4309 3.496331 TCCCCAAGATTTCCTGACAAAC 58.504 45.455 0.00 0.00 0.00 2.93
3294 4327 7.447545 AGACAAAGGAACACTAGTTATTTTCCC 59.552 37.037 14.55 3.12 38.30 3.97
3574 4732 7.809546 TGGACATTGTAAGTTTGTAACATGA 57.190 32.000 0.00 0.00 0.00 3.07
3663 4821 9.130312 CTTGAATAGTACTTCCGCACTATTATC 57.870 37.037 0.00 0.00 44.23 1.75
3707 4869 7.170965 AGAAGTTTATGGATCAGTCACATGTT 58.829 34.615 0.00 0.00 0.00 2.71
3708 4870 6.715280 AGAAGTTTATGGATCAGTCACATGT 58.285 36.000 0.00 0.00 0.00 3.21
3755 4922 5.708230 TCTTTACGGACATGCATAAACCTTT 59.292 36.000 0.00 0.00 0.00 3.11
3815 5727 3.467226 CGCACCCCTATCCACGGT 61.467 66.667 0.00 0.00 0.00 4.83
3818 5730 1.906105 TTCCACGCACCCCTATCCAC 61.906 60.000 0.00 0.00 0.00 4.02
3904 5816 1.480954 TCAGTCCGAGATAAGTTGGGC 59.519 52.381 0.00 0.00 0.00 5.36
3953 5865 8.974238 TCTCTTTCCGTACCTAAAAGAATATGA 58.026 33.333 11.10 5.04 38.25 2.15
4084 5996 6.563422 TCCTGCATCTTTTAAATTTGATCGG 58.437 36.000 0.00 0.00 0.00 4.18
4320 6233 2.362717 GAGTATTTCTGGACGGAGGGAG 59.637 54.545 0.00 0.00 0.00 4.30
4321 6234 2.385803 GAGTATTTCTGGACGGAGGGA 58.614 52.381 0.00 0.00 0.00 4.20
4322 6235 1.067212 CGAGTATTTCTGGACGGAGGG 59.933 57.143 0.00 0.00 0.00 4.30
4323 6236 1.749634 ACGAGTATTTCTGGACGGAGG 59.250 52.381 0.00 0.00 0.00 4.30
4324 6237 2.539142 CGACGAGTATTTCTGGACGGAG 60.539 54.545 0.00 0.00 36.75 4.63
4325 6238 1.399440 CGACGAGTATTTCTGGACGGA 59.601 52.381 0.00 0.00 36.75 4.69
4326 6239 1.823828 CGACGAGTATTTCTGGACGG 58.176 55.000 0.00 0.00 36.75 4.79
4327 6240 1.399440 TCCGACGAGTATTTCTGGACG 59.601 52.381 0.00 0.00 38.91 4.79
4328 6241 2.223525 CCTCCGACGAGTATTTCTGGAC 60.224 54.545 0.00 0.00 33.93 4.02
4329 6242 2.022195 CCTCCGACGAGTATTTCTGGA 58.978 52.381 0.00 0.00 33.93 3.86
4330 6243 2.022195 TCCTCCGACGAGTATTTCTGG 58.978 52.381 0.00 0.00 33.93 3.86
4331 6244 3.777465 TTCCTCCGACGAGTATTTCTG 57.223 47.619 0.00 0.00 33.93 3.02
4332 6245 3.068307 CCATTCCTCCGACGAGTATTTCT 59.932 47.826 0.00 0.00 33.93 2.52
4333 6246 3.067742 TCCATTCCTCCGACGAGTATTTC 59.932 47.826 0.00 0.00 33.93 2.17
4334 6247 3.028850 TCCATTCCTCCGACGAGTATTT 58.971 45.455 0.00 0.00 33.93 1.40
4335 6248 2.662866 TCCATTCCTCCGACGAGTATT 58.337 47.619 0.00 0.00 33.93 1.89
4336 6249 2.359981 TCCATTCCTCCGACGAGTAT 57.640 50.000 0.00 0.00 33.93 2.12
4337 6250 1.954382 CATCCATTCCTCCGACGAGTA 59.046 52.381 0.00 0.00 33.93 2.59
4338 6251 0.747255 CATCCATTCCTCCGACGAGT 59.253 55.000 0.00 0.00 33.93 4.18
4339 6252 0.747255 ACATCCATTCCTCCGACGAG 59.253 55.000 0.00 0.00 35.72 4.18
4340 6253 2.061509 TACATCCATTCCTCCGACGA 57.938 50.000 0.00 0.00 0.00 4.20
4341 6254 2.558795 AGATACATCCATTCCTCCGACG 59.441 50.000 0.00 0.00 0.00 5.12
4342 6255 5.010933 TCTAGATACATCCATTCCTCCGAC 58.989 45.833 0.00 0.00 0.00 4.79
4343 6256 5.256806 TCTAGATACATCCATTCCTCCGA 57.743 43.478 0.00 0.00 0.00 4.55
4344 6257 5.420421 ACATCTAGATACATCCATTCCTCCG 59.580 44.000 4.54 0.00 0.00 4.63
4345 6258 6.865834 ACATCTAGATACATCCATTCCTCC 57.134 41.667 4.54 0.00 0.00 4.30
4384 6297 8.863049 GTCGAAGAAATGCATAAAAATGAATGT 58.137 29.630 0.00 0.00 39.69 2.71
4385 6298 8.862074 TGTCGAAGAAATGCATAAAAATGAATG 58.138 29.630 0.00 0.00 39.69 2.67
4386 6299 8.984891 TGTCGAAGAAATGCATAAAAATGAAT 57.015 26.923 0.00 0.00 39.69 2.57
4387 6300 8.809159 TTGTCGAAGAAATGCATAAAAATGAA 57.191 26.923 0.00 0.00 39.69 2.57
4388 6301 8.081633 ACTTGTCGAAGAAATGCATAAAAATGA 58.918 29.630 0.00 0.00 39.69 2.57
4389 6302 8.231304 ACTTGTCGAAGAAATGCATAAAAATG 57.769 30.769 0.00 0.00 39.69 2.32
4391 6304 9.906660 AATACTTGTCGAAGAAATGCATAAAAA 57.093 25.926 0.00 0.00 39.69 1.94
4392 6305 9.906660 AAATACTTGTCGAAGAAATGCATAAAA 57.093 25.926 0.00 0.00 39.69 1.52
4393 6306 9.554724 GAAATACTTGTCGAAGAAATGCATAAA 57.445 29.630 0.00 0.00 39.69 1.40
4394 6307 8.181573 GGAAATACTTGTCGAAGAAATGCATAA 58.818 33.333 0.00 0.00 39.69 1.90
4395 6308 7.465379 CGGAAATACTTGTCGAAGAAATGCATA 60.465 37.037 0.00 0.00 39.69 3.14
4396 6309 6.555315 GGAAATACTTGTCGAAGAAATGCAT 58.445 36.000 0.00 0.00 39.69 3.96
4397 6310 5.390461 CGGAAATACTTGTCGAAGAAATGCA 60.390 40.000 0.00 0.00 39.69 3.96
4398 6311 5.022021 CGGAAATACTTGTCGAAGAAATGC 58.978 41.667 0.00 0.00 39.69 3.56
4399 6312 5.350365 TCCGGAAATACTTGTCGAAGAAATG 59.650 40.000 0.00 0.00 39.69 2.32
4400 6313 5.350640 GTCCGGAAATACTTGTCGAAGAAAT 59.649 40.000 5.23 0.00 39.69 2.17
4401 6314 4.687483 GTCCGGAAATACTTGTCGAAGAAA 59.313 41.667 5.23 0.00 39.69 2.52
4402 6315 4.240096 GTCCGGAAATACTTGTCGAAGAA 58.760 43.478 5.23 0.00 39.69 2.52
4403 6316 3.671433 CGTCCGGAAATACTTGTCGAAGA 60.671 47.826 5.23 0.00 32.98 2.87
4404 6317 2.597305 CGTCCGGAAATACTTGTCGAAG 59.403 50.000 5.23 0.00 35.07 3.79
4405 6318 2.598589 CGTCCGGAAATACTTGTCGAA 58.401 47.619 5.23 0.00 0.00 3.71
4406 6319 1.135315 CCGTCCGGAAATACTTGTCGA 60.135 52.381 5.23 0.00 37.50 4.20
4407 6320 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
4408 6321 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4409 6322 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4410 6323 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4411 6324 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
4412 6325 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4413 6326 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4414 6327 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
4415 6328 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
4416 6329 0.251742 TTACTCCCTCCGTCCGGAAA 60.252 55.000 5.23 0.00 44.66 3.13
4417 6330 0.032813 ATTACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
4418 6331 0.466922 GATTACTCCCTCCGTCCGGA 60.467 60.000 0.00 0.00 42.90 5.14
4419 6332 0.467659 AGATTACTCCCTCCGTCCGG 60.468 60.000 0.00 0.00 0.00 5.14
4420 6333 0.669077 CAGATTACTCCCTCCGTCCG 59.331 60.000 0.00 0.00 0.00 4.79
4421 6334 1.777941 ACAGATTACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
4422 6335 3.889520 AAACAGATTACTCCCTCCGTC 57.110 47.619 0.00 0.00 0.00 4.79
4423 6336 4.635699 AAAAACAGATTACTCCCTCCGT 57.364 40.909 0.00 0.00 0.00 4.69
4424 6337 6.653740 ACTTTAAAAACAGATTACTCCCTCCG 59.346 38.462 0.00 0.00 0.00 4.63
4425 6338 7.997773 ACTTTAAAAACAGATTACTCCCTCC 57.002 36.000 0.00 0.00 0.00 4.30
4427 6340 9.011095 GCTAACTTTAAAAACAGATTACTCCCT 57.989 33.333 0.00 0.00 0.00 4.20
4428 6341 8.242053 GGCTAACTTTAAAAACAGATTACTCCC 58.758 37.037 0.00 0.00 0.00 4.30
4429 6342 8.789762 TGGCTAACTTTAAAAACAGATTACTCC 58.210 33.333 0.00 0.00 0.00 3.85
4430 6343 9.608617 GTGGCTAACTTTAAAAACAGATTACTC 57.391 33.333 0.00 0.00 0.00 2.59
4431 6344 9.127277 TGTGGCTAACTTTAAAAACAGATTACT 57.873 29.630 0.00 0.00 0.00 2.24
4465 6379 6.084326 AGTGTTTATTTGATCCGCTTTTGT 57.916 33.333 0.00 0.00 0.00 2.83
4493 6407 1.682854 TGTCCAAGCAGCTTTTTCCTG 59.317 47.619 4.38 0.00 0.00 3.86
4506 6420 8.526147 GGATAATGATAATCCCATTTGTCCAAG 58.474 37.037 0.00 0.00 37.52 3.61
4570 6484 8.408043 TGACTTTGAATGATGAAAACTACCAT 57.592 30.769 0.00 0.00 0.00 3.55
4608 6522 2.291209 TGCATGGGTGTGAAAGATGT 57.709 45.000 0.00 0.00 0.00 3.06
4620 6534 0.959553 GCAGAGGATGATTGCATGGG 59.040 55.000 0.00 0.00 37.75 4.00
4812 6729 2.579410 AGCCATTTGGGTAAGAACGT 57.421 45.000 0.00 0.00 45.38 3.99
4822 6739 3.641437 TCTTTTGTCGAAGCCATTTGG 57.359 42.857 0.00 0.00 38.53 3.28
4981 6899 8.352808 ACAGGTATTTATATTCCCTACCCAAA 57.647 34.615 0.00 0.00 33.76 3.28
5019 6937 5.123227 ACATGGTTACCGATACATCCAAAG 58.877 41.667 0.00 0.00 0.00 2.77
5020 6938 5.105567 ACATGGTTACCGATACATCCAAA 57.894 39.130 0.00 0.00 0.00 3.28
5038 6956 4.946157 AGGACAGAAATCAAGGCTAACATG 59.054 41.667 0.00 0.00 0.00 3.21
5059 6977 5.945466 AAAAATGGCAAATGTAGCAAAGG 57.055 34.783 0.00 0.00 0.00 3.11
5968 7891 7.391148 TCCCACTGCTGTTAAATCTTATTTC 57.609 36.000 0.00 0.00 0.00 2.17
6052 7975 9.844257 TGAAGGTTCCATTTTTGTGAAAATATT 57.156 25.926 0.00 0.00 42.14 1.28
6194 8119 5.260424 TGGCATCTAAACAGGAATAAAGCA 58.740 37.500 0.00 0.00 0.00 3.91
6361 8287 7.882791 TGCATTTACATCTAACTCCTTTCAGAA 59.117 33.333 0.00 0.00 0.00 3.02
6406 8332 6.055588 TGTGTTTTCTCTTCTTCTTAGGGTG 58.944 40.000 0.00 0.00 0.00 4.61
6512 8438 0.882042 AGACAGCACTGGTTCGCTTG 60.882 55.000 2.21 0.00 35.96 4.01
6591 8517 9.399797 GGATAATTATGCATACATCATTGGAGA 57.600 33.333 5.74 0.00 37.74 3.71
6928 8878 4.935205 AGTAAAATTACGTGAGCATGCAGA 59.065 37.500 21.98 1.90 38.65 4.26
6948 8898 7.182206 GGAGATTGCCCCTAGGATTTATAAGTA 59.818 40.741 11.48 0.00 33.47 2.24
6949 8899 6.012421 GGAGATTGCCCCTAGGATTTATAAGT 60.012 42.308 11.48 0.00 33.47 2.24
6950 8900 6.216456 AGGAGATTGCCCCTAGGATTTATAAG 59.784 42.308 11.48 0.00 33.47 1.73
6952 8902 5.676125 AGGAGATTGCCCCTAGGATTTATA 58.324 41.667 11.48 0.00 33.47 0.98
6954 8904 3.910627 GAGGAGATTGCCCCTAGGATTTA 59.089 47.826 11.48 0.00 33.47 1.40
6955 8905 2.713708 GAGGAGATTGCCCCTAGGATTT 59.286 50.000 11.48 0.00 33.47 2.17
6956 8906 2.343625 GAGGAGATTGCCCCTAGGATT 58.656 52.381 11.48 0.00 33.47 3.01
6957 8907 1.224120 TGAGGAGATTGCCCCTAGGAT 59.776 52.381 11.48 0.00 33.47 3.24
6959 8909 1.627834 GATGAGGAGATTGCCCCTAGG 59.372 57.143 0.06 0.06 31.84 3.02
6960 8910 2.302445 CTGATGAGGAGATTGCCCCTAG 59.698 54.545 0.00 0.00 31.84 3.02
7002 8954 5.692204 CCAGAAGTGTACACAGTAAGAACAG 59.308 44.000 27.06 6.10 0.00 3.16
7017 8969 0.834687 TTAGCCCGTCCCAGAAGTGT 60.835 55.000 0.00 0.00 0.00 3.55
7156 9108 9.196552 CGCTTGAGAAATCATAGTATGTATCAA 57.803 33.333 9.94 8.95 0.00 2.57
7255 9472 3.247442 CATGACAAATTGACGCTGCATT 58.753 40.909 0.00 0.00 0.00 3.56
7264 9481 3.193903 CCAGCCATCACATGACAAATTGA 59.806 43.478 0.00 0.00 0.00 2.57
7327 9548 8.960591 TCAGAATTTATGAATCTTTTGGAGGAC 58.039 33.333 0.00 0.00 0.00 3.85
7355 9576 2.125326 CAGCCAGACGATCCCGGTA 61.125 63.158 0.00 0.00 40.78 4.02
7356 9577 2.849096 TACAGCCAGACGATCCCGGT 62.849 60.000 0.00 0.00 40.78 5.28
7357 9578 1.672854 TTACAGCCAGACGATCCCGG 61.673 60.000 0.00 0.00 40.78 5.73
7386 9608 3.244526 TGAGCATTGGTGTTCTAGCTTCA 60.245 43.478 0.00 0.00 36.62 3.02
7390 9612 2.357009 CCATGAGCATTGGTGTTCTAGC 59.643 50.000 0.00 0.00 36.62 3.42
7406 9628 6.351033 GGTGAACTACTTGTCTCATACCATGA 60.351 42.308 0.00 0.00 37.76 3.07
7414 9636 1.684450 TGCGGTGAACTACTTGTCTCA 59.316 47.619 0.00 0.00 0.00 3.27
7419 9641 1.920574 CTCGATGCGGTGAACTACTTG 59.079 52.381 0.00 0.00 0.00 3.16
7420 9642 1.736032 GCTCGATGCGGTGAACTACTT 60.736 52.381 0.00 0.00 0.00 2.24
7433 9655 0.740868 TTTTCCGGCTCTGCTCGATG 60.741 55.000 0.00 0.00 0.00 3.84
7454 9676 6.522054 GCCTAGCGATGCCCTATATATTTTA 58.478 40.000 0.00 0.00 0.00 1.52
7473 9695 0.872021 GACGATCAGCCAACGCCTAG 60.872 60.000 0.00 0.00 34.57 3.02
7475 9697 2.125512 GACGATCAGCCAACGCCT 60.126 61.111 0.00 0.00 34.57 5.52
7476 9698 3.554692 CGACGATCAGCCAACGCC 61.555 66.667 0.00 0.00 34.57 5.68
7477 9699 4.210304 GCGACGATCAGCCAACGC 62.210 66.667 0.00 0.00 39.33 4.84
7478 9700 2.792290 CTGCGACGATCAGCCAACG 61.792 63.158 0.00 0.00 0.00 4.10
7479 9701 2.456119 CCTGCGACGATCAGCCAAC 61.456 63.158 0.00 0.00 0.00 3.77
7480 9702 2.125552 CCTGCGACGATCAGCCAA 60.126 61.111 0.00 0.00 0.00 4.52
7481 9703 4.147449 CCCTGCGACGATCAGCCA 62.147 66.667 0.00 0.00 0.00 4.75
7491 9713 3.147595 CCGATCTGGTCCCTGCGA 61.148 66.667 0.00 0.00 0.00 5.10
7517 9739 1.403679 GCAAACCAGTTGTACTGTGCA 59.596 47.619 12.99 0.00 44.50 4.57
7518 9740 1.676006 AGCAAACCAGTTGTACTGTGC 59.324 47.619 10.96 10.96 44.50 4.57
7521 9743 4.142816 GCTATCAGCAAACCAGTTGTACTG 60.143 45.833 0.00 0.00 42.53 2.74
7523 9745 3.127030 GGCTATCAGCAAACCAGTTGTAC 59.873 47.826 0.00 0.00 44.75 2.90
7533 9755 2.288666 GATCCAACGGCTATCAGCAAA 58.711 47.619 0.00 0.00 44.75 3.68
7550 9772 0.250513 AAGAGAACGGCAGGGTGATC 59.749 55.000 0.00 0.00 0.00 2.92
7559 9781 1.663135 GAGATGCAAGAAGAGAACGGC 59.337 52.381 0.00 0.00 0.00 5.68
7572 9799 2.760378 GGGGGCTGGATGAGATGCA 61.760 63.158 0.00 0.00 0.00 3.96
7590 9817 3.798506 CGTTTGTCACGTGAGTTGG 57.201 52.632 20.73 3.79 46.40 3.77
7608 9835 4.899239 AGCATGCTACCGCTCGGC 62.899 66.667 21.21 0.00 39.32 5.54
7609 9836 2.202932 AAGCATGCTACCGCTCGG 60.203 61.111 23.00 6.79 37.54 4.63
7610 9837 0.527600 TACAAGCATGCTACCGCTCG 60.528 55.000 23.00 6.25 37.54 5.03
7611 9838 1.212616 CTACAAGCATGCTACCGCTC 58.787 55.000 23.00 0.00 37.54 5.03
7612 9839 0.537188 ACTACAAGCATGCTACCGCT 59.463 50.000 23.00 0.76 41.20 5.52
7613 9840 0.652592 CACTACAAGCATGCTACCGC 59.347 55.000 23.00 0.00 0.00 5.68
7614 9841 1.927174 GACACTACAAGCATGCTACCG 59.073 52.381 23.00 15.04 0.00 4.02
7615 9842 1.927174 CGACACTACAAGCATGCTACC 59.073 52.381 23.00 3.35 0.00 3.18
7616 9843 2.607187 ACGACACTACAAGCATGCTAC 58.393 47.619 23.00 4.58 0.00 3.58
7617 9844 2.993220 CAACGACACTACAAGCATGCTA 59.007 45.455 23.00 4.25 0.00 3.49
7618 9845 1.800586 CAACGACACTACAAGCATGCT 59.199 47.619 16.30 16.30 0.00 3.79
7619 9846 1.725931 GCAACGACACTACAAGCATGC 60.726 52.381 10.51 10.51 0.00 4.06
7620 9847 1.135972 GGCAACGACACTACAAGCATG 60.136 52.381 0.00 0.00 0.00 4.06
7621 9848 1.156736 GGCAACGACACTACAAGCAT 58.843 50.000 0.00 0.00 0.00 3.79
7622 9849 0.882927 GGGCAACGACACTACAAGCA 60.883 55.000 0.00 0.00 37.60 3.91
7623 9850 1.866925 GGGCAACGACACTACAAGC 59.133 57.895 0.00 0.00 37.60 4.01
7642 9869 3.241701 CAACCCATGCAAACGTTGATAC 58.758 45.455 14.61 0.00 38.25 2.24
7643 9870 3.567576 CAACCCATGCAAACGTTGATA 57.432 42.857 14.61 0.00 38.25 2.15
7644 9871 2.437200 CAACCCATGCAAACGTTGAT 57.563 45.000 14.61 0.00 38.25 2.57
7645 9872 3.955291 CAACCCATGCAAACGTTGA 57.045 47.368 14.61 0.00 38.25 3.18
7655 9882 1.880819 GCAGGAACCAGCAACCCATG 61.881 60.000 3.43 0.00 0.00 3.66
7656 9883 1.607467 GCAGGAACCAGCAACCCAT 60.607 57.895 3.43 0.00 0.00 4.00
7657 9884 2.203480 GCAGGAACCAGCAACCCA 60.203 61.111 3.43 0.00 0.00 4.51
7658 9885 2.116125 AGCAGGAACCAGCAACCC 59.884 61.111 10.57 0.00 32.05 4.11
7659 9886 0.823356 TTCAGCAGGAACCAGCAACC 60.823 55.000 10.57 0.00 32.05 3.77
7660 9887 2.719376 TTCAGCAGGAACCAGCAAC 58.281 52.632 10.57 0.00 32.05 4.17
7668 9895 3.588277 GTGAGACGTTCAGCAGGAA 57.412 52.632 0.00 0.00 36.21 3.36
7674 9901 0.109689 GAGACCGGTGAGACGTTCAG 60.110 60.000 14.63 0.00 36.21 3.02
7675 9902 0.820482 TGAGACCGGTGAGACGTTCA 60.820 55.000 14.63 1.02 0.00 3.18
7676 9903 0.109689 CTGAGACCGGTGAGACGTTC 60.110 60.000 14.63 0.00 0.00 3.95
7677 9904 0.536687 TCTGAGACCGGTGAGACGTT 60.537 55.000 14.63 0.00 0.00 3.99
7678 9905 0.536687 TTCTGAGACCGGTGAGACGT 60.537 55.000 14.63 0.00 0.00 4.34
7679 9906 0.811915 ATTCTGAGACCGGTGAGACG 59.188 55.000 14.63 0.00 0.00 4.18
7680 9907 2.028930 ACAATTCTGAGACCGGTGAGAC 60.029 50.000 14.63 0.00 0.00 3.36
7681 9908 2.029020 CACAATTCTGAGACCGGTGAGA 60.029 50.000 14.63 7.76 0.00 3.27
7682 9909 2.029020 TCACAATTCTGAGACCGGTGAG 60.029 50.000 14.63 4.98 30.99 3.51
7683 9910 1.967779 TCACAATTCTGAGACCGGTGA 59.032 47.619 14.63 0.00 0.00 4.02
7684 9911 2.455674 TCACAATTCTGAGACCGGTG 57.544 50.000 14.63 0.00 0.00 4.94
7685 9912 3.338249 CATTCACAATTCTGAGACCGGT 58.662 45.455 6.92 6.92 0.00 5.28
7686 9913 2.679837 CCATTCACAATTCTGAGACCGG 59.320 50.000 0.00 0.00 0.00 5.28
7687 9914 2.679837 CCCATTCACAATTCTGAGACCG 59.320 50.000 0.00 0.00 0.00 4.79
7688 9915 2.424956 GCCCATTCACAATTCTGAGACC 59.575 50.000 0.00 0.00 0.00 3.85
7689 9916 2.096496 CGCCCATTCACAATTCTGAGAC 59.904 50.000 0.00 0.00 0.00 3.36
7690 9917 2.290260 ACGCCCATTCACAATTCTGAGA 60.290 45.455 0.00 0.00 0.00 3.27
7691 9918 2.086869 ACGCCCATTCACAATTCTGAG 58.913 47.619 0.00 0.00 0.00 3.35
7692 9919 1.811965 CACGCCCATTCACAATTCTGA 59.188 47.619 0.00 0.00 0.00 3.27
7693 9920 1.733389 GCACGCCCATTCACAATTCTG 60.733 52.381 0.00 0.00 0.00 3.02
7694 9921 0.527565 GCACGCCCATTCACAATTCT 59.472 50.000 0.00 0.00 0.00 2.40
7695 9922 0.458370 GGCACGCCCATTCACAATTC 60.458 55.000 0.00 0.00 0.00 2.17
7696 9923 1.591183 GGCACGCCCATTCACAATT 59.409 52.632 0.00 0.00 0.00 2.32
7697 9924 3.287445 GGCACGCCCATTCACAAT 58.713 55.556 0.00 0.00 0.00 2.71
7710 9937 0.535102 AAGGTAGCATATGCCGGCAC 60.535 55.000 35.50 19.95 43.38 5.01
7711 9938 0.250295 GAAGGTAGCATATGCCGGCA 60.250 55.000 34.80 34.80 43.38 5.69
7712 9939 1.291877 CGAAGGTAGCATATGCCGGC 61.292 60.000 23.96 22.73 43.38 6.13
7713 9940 0.033504 ACGAAGGTAGCATATGCCGG 59.966 55.000 23.96 0.00 43.38 6.13
7714 9941 1.419374 GACGAAGGTAGCATATGCCG 58.581 55.000 23.96 19.85 43.38 5.69
7715 9942 1.797025 GGACGAAGGTAGCATATGCC 58.203 55.000 23.96 9.68 43.38 4.40
7716 9943 1.419374 CGGACGAAGGTAGCATATGC 58.581 55.000 20.36 20.36 42.49 3.14
7717 9944 1.336887 CCCGGACGAAGGTAGCATATG 60.337 57.143 0.73 0.00 0.00 1.78
7718 9945 0.966920 CCCGGACGAAGGTAGCATAT 59.033 55.000 0.73 0.00 0.00 1.78
7719 9946 0.396139 ACCCGGACGAAGGTAGCATA 60.396 55.000 0.73 0.00 33.52 3.14
7720 9947 1.262640 AACCCGGACGAAGGTAGCAT 61.263 55.000 0.73 0.00 34.45 3.79
7721 9948 1.474332 AAACCCGGACGAAGGTAGCA 61.474 55.000 0.73 0.00 34.45 3.49
7722 9949 0.532115 TAAACCCGGACGAAGGTAGC 59.468 55.000 0.73 0.00 34.45 3.58
7723 9950 3.531934 AATAAACCCGGACGAAGGTAG 57.468 47.619 0.73 0.00 34.45 3.18
7724 9951 4.141959 CCTTAATAAACCCGGACGAAGGTA 60.142 45.833 0.73 0.00 34.45 3.08
7725 9952 3.369787 CCTTAATAAACCCGGACGAAGGT 60.370 47.826 0.73 0.00 38.27 3.50
7726 9953 3.118665 TCCTTAATAAACCCGGACGAAGG 60.119 47.826 0.73 5.98 34.71 3.46
7727 9954 3.867493 GTCCTTAATAAACCCGGACGAAG 59.133 47.826 0.73 0.00 35.34 3.79
7728 9955 3.369366 GGTCCTTAATAAACCCGGACGAA 60.369 47.826 0.73 0.00 43.87 3.85
7729 9956 2.168313 GGTCCTTAATAAACCCGGACGA 59.832 50.000 0.73 0.00 43.87 4.20
7730 9957 2.554142 GGTCCTTAATAAACCCGGACG 58.446 52.381 0.73 0.00 43.87 4.79
7731 9958 2.923121 GGGTCCTTAATAAACCCGGAC 58.077 52.381 0.73 0.00 43.08 4.79
7736 9963 7.949690 AATACAAGTGGGTCCTTAATAAACC 57.050 36.000 0.00 0.00 0.00 3.27
7737 9964 9.850628 GAAAATACAAGTGGGTCCTTAATAAAC 57.149 33.333 0.00 0.00 0.00 2.01
7738 9965 8.732531 CGAAAATACAAGTGGGTCCTTAATAAA 58.267 33.333 0.00 0.00 0.00 1.40
7739 9966 7.337436 CCGAAAATACAAGTGGGTCCTTAATAA 59.663 37.037 0.00 0.00 0.00 1.40
7740 9967 6.824704 CCGAAAATACAAGTGGGTCCTTAATA 59.175 38.462 0.00 0.00 0.00 0.98
7741 9968 5.650703 CCGAAAATACAAGTGGGTCCTTAAT 59.349 40.000 0.00 0.00 0.00 1.40
7742 9969 5.005094 CCGAAAATACAAGTGGGTCCTTAA 58.995 41.667 0.00 0.00 0.00 1.85
7743 9970 4.041938 ACCGAAAATACAAGTGGGTCCTTA 59.958 41.667 0.00 0.00 0.00 2.69
7744 9971 3.181437 ACCGAAAATACAAGTGGGTCCTT 60.181 43.478 0.00 0.00 0.00 3.36
7745 9972 2.374170 ACCGAAAATACAAGTGGGTCCT 59.626 45.455 0.00 0.00 0.00 3.85
7746 9973 2.745821 GACCGAAAATACAAGTGGGTCC 59.254 50.000 0.00 0.00 37.17 4.46
7747 9974 3.404899 TGACCGAAAATACAAGTGGGTC 58.595 45.455 0.53 0.53 42.10 4.46
7748 9975 3.495434 TGACCGAAAATACAAGTGGGT 57.505 42.857 0.00 0.00 0.00 4.51
7749 9976 4.277423 AGTTTGACCGAAAATACAAGTGGG 59.723 41.667 0.00 0.00 0.00 4.61
7750 9977 5.432885 AGTTTGACCGAAAATACAAGTGG 57.567 39.130 0.00 0.00 0.00 4.00
7751 9978 6.970043 TCAAAGTTTGACCGAAAATACAAGTG 59.030 34.615 14.35 0.00 34.08 3.16
7752 9979 7.090953 TCAAAGTTTGACCGAAAATACAAGT 57.909 32.000 14.35 0.00 34.08 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.