Multiple sequence alignment - TraesCS3D01G089900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G089900 chr3D 100.000 5438 0 0 1 5438 45751205 45756642 0.000000e+00 10043.0
1 TraesCS3D01G089900 chr3B 91.437 3305 183 49 52 3320 71392452 71395692 0.000000e+00 4444.0
2 TraesCS3D01G089900 chr3B 91.419 1142 61 15 3420 4541 71395686 71396810 0.000000e+00 1531.0
3 TraesCS3D01G089900 chr3B 87.530 417 24 12 4932 5328 71397353 71397761 1.790000e-124 457.0
4 TraesCS3D01G089900 chr3B 87.500 352 22 12 4544 4880 71396876 71397220 2.380000e-103 387.0
5 TraesCS3D01G089900 chr3B 92.308 65 4 1 1 64 710801416 710801480 2.090000e-14 91.6
6 TraesCS3D01G089900 chr3A 90.011 1822 108 31 53 1837 57259954 57261738 0.000000e+00 2289.0
7 TraesCS3D01G089900 chr3A 90.619 1130 64 22 3425 4541 57263434 57264534 0.000000e+00 1461.0
8 TraesCS3D01G089900 chr3A 89.231 845 61 20 2487 3320 57262611 57263436 0.000000e+00 1029.0
9 TraesCS3D01G089900 chr3A 96.353 329 12 0 1842 2170 57261827 57262155 4.790000e-150 542.0
10 TraesCS3D01G089900 chr3A 95.847 313 13 0 2165 2477 57262233 57262545 1.750000e-139 507.0
11 TraesCS3D01G089900 chr3A 89.222 167 12 5 4544 4706 57264599 57264763 2.570000e-48 204.0
12 TraesCS3D01G089900 chr3A 85.185 135 4 9 5310 5438 57278104 57278228 2.060000e-24 124.0
13 TraesCS3D01G089900 chr6B 92.035 113 5 2 3306 3415 634983727 634983838 7.290000e-34 156.0
14 TraesCS3D01G089900 chr6B 94.828 58 3 0 1 58 204116486 204116429 2.090000e-14 91.6
15 TraesCS3D01G089900 chr1B 95.000 100 2 1 3317 3413 593611573 593611474 2.620000e-33 154.0
16 TraesCS3D01G089900 chr5D 90.435 115 9 2 3310 3424 63612559 63612671 3.390000e-32 150.0
17 TraesCS3D01G089900 chr7A 95.652 92 4 0 3324 3415 409260233 409260324 1.220000e-31 148.0
18 TraesCS3D01G089900 chr7A 96.364 55 2 0 1 55 329048704 329048758 2.090000e-14 91.6
19 TraesCS3D01G089900 chr5B 92.233 103 4 2 3316 3415 378735971 378736072 5.680000e-30 143.0
20 TraesCS3D01G089900 chr5B 91.589 107 3 4 3319 3421 659593770 659593666 5.680000e-30 143.0
21 TraesCS3D01G089900 chr5B 89.908 109 7 2 3317 3421 419522777 419522669 2.640000e-28 137.0
22 TraesCS3D01G089900 chr5B 98.148 54 1 0 1 54 433990627 433990680 1.610000e-15 95.3
23 TraesCS3D01G089900 chrUn 90.741 108 5 3 3318 3421 8839669 8839775 7.340000e-29 139.0
24 TraesCS3D01G089900 chr7D 90.654 107 6 2 3319 3421 614279541 614279647 7.340000e-29 139.0
25 TraesCS3D01G089900 chr6A 98.246 57 1 0 1 57 492198858 492198802 3.470000e-17 100.0
26 TraesCS3D01G089900 chr6A 98.148 54 1 0 2 55 88609168 88609115 1.610000e-15 95.3
27 TraesCS3D01G089900 chr1D 98.246 57 1 0 1 57 451950231 451950287 3.470000e-17 100.0
28 TraesCS3D01G089900 chr5A 98.148 54 1 0 1 54 542531712 542531659 1.610000e-15 95.3
29 TraesCS3D01G089900 chr4D 98.113 53 1 0 1 53 358725032 358724980 5.800000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G089900 chr3D 45751205 45756642 5437 False 10043.000000 10043 100.0000 1 5438 1 chr3D.!!$F1 5437
1 TraesCS3D01G089900 chr3B 71392452 71397761 5309 False 1704.750000 4444 89.4715 52 5328 4 chr3B.!!$F2 5276
2 TraesCS3D01G089900 chr3A 57259954 57264763 4809 False 1005.333333 2289 91.8805 53 4706 6 chr3A.!!$F2 4653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
750 757 0.178987 TAAGCTGGTTTTGGGCCGAA 60.179 50.0 0.79 0.79 0.00 4.30 F
1572 1611 0.459237 TTTTGCTTGTGTTGCCGGTG 60.459 50.0 1.90 0.00 0.00 4.94 F
1620 1663 0.247736 GTCTGCAGATCCTGTTCGGT 59.752 55.0 21.47 0.00 33.43 4.69 F
2836 3109 1.108727 TGTTGCTTGGGAAGTGGCTG 61.109 55.0 0.00 0.00 0.00 4.85 F
3977 4261 0.110056 CACCTCAAATCAGTGTGCGC 60.110 55.0 0.00 0.00 0.00 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1587 1626 1.010797 CAGACACAACACAGCGCAC 60.011 57.895 11.47 0.0 0.00 5.34 R
3402 3683 0.307760 CATATGCTCGGTTTTCGCCC 59.692 55.000 0.00 0.0 39.05 6.13 R
3403 3684 0.317020 GCATATGCTCGGTTTTCGCC 60.317 55.000 20.64 0.0 39.05 5.54 R
4032 4316 0.111061 AAAGATGCTGGTGCCTCACA 59.889 50.000 0.00 0.0 36.49 3.58 R
5414 5893 0.033504 GACGGACAACAGGCTTCTCA 59.966 55.000 0.00 0.0 0.00 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.698029 GCTTTGCACCGATCAATACAT 57.302 42.857 0.00 0.00 0.00 2.29
21 22 3.621794 GCTTTGCACCGATCAATACATC 58.378 45.455 0.00 0.00 0.00 3.06
22 23 3.065233 GCTTTGCACCGATCAATACATCA 59.935 43.478 0.00 0.00 0.00 3.07
23 24 4.261322 GCTTTGCACCGATCAATACATCAT 60.261 41.667 0.00 0.00 0.00 2.45
24 25 4.816786 TTGCACCGATCAATACATCATG 57.183 40.909 0.00 0.00 0.00 3.07
25 26 4.070630 TGCACCGATCAATACATCATGA 57.929 40.909 0.00 0.00 0.00 3.07
26 27 4.450053 TGCACCGATCAATACATCATGAA 58.550 39.130 0.00 0.00 0.00 2.57
27 28 4.512571 TGCACCGATCAATACATCATGAAG 59.487 41.667 0.00 0.00 0.00 3.02
28 29 4.612259 GCACCGATCAATACATCATGAAGC 60.612 45.833 0.00 0.00 0.00 3.86
29 30 4.512571 CACCGATCAATACATCATGAAGCA 59.487 41.667 0.00 0.00 0.00 3.91
30 31 5.180680 CACCGATCAATACATCATGAAGCAT 59.819 40.000 0.00 0.00 0.00 3.79
31 32 5.766670 ACCGATCAATACATCATGAAGCATT 59.233 36.000 0.00 0.00 0.00 3.56
32 33 6.084277 CCGATCAATACATCATGAAGCATTG 58.916 40.000 14.91 14.91 0.00 2.82
33 34 5.567915 CGATCAATACATCATGAAGCATTGC 59.432 40.000 15.86 0.00 0.00 3.56
34 35 5.190992 TCAATACATCATGAAGCATTGCC 57.809 39.130 15.86 0.00 0.00 4.52
35 36 4.645588 TCAATACATCATGAAGCATTGCCA 59.354 37.500 15.86 0.00 0.00 4.92
36 37 5.127356 TCAATACATCATGAAGCATTGCCAA 59.873 36.000 15.86 0.88 0.00 4.52
37 38 3.965379 ACATCATGAAGCATTGCCAAA 57.035 38.095 4.70 0.00 0.00 3.28
38 39 3.592059 ACATCATGAAGCATTGCCAAAC 58.408 40.909 4.70 0.00 0.00 2.93
39 40 3.259876 ACATCATGAAGCATTGCCAAACT 59.740 39.130 4.70 0.00 0.00 2.66
40 41 3.581024 TCATGAAGCATTGCCAAACTC 57.419 42.857 4.70 0.00 0.00 3.01
41 42 3.159472 TCATGAAGCATTGCCAAACTCT 58.841 40.909 4.70 0.00 0.00 3.24
42 43 3.192001 TCATGAAGCATTGCCAAACTCTC 59.808 43.478 4.70 0.00 0.00 3.20
43 44 1.536766 TGAAGCATTGCCAAACTCTCG 59.463 47.619 4.70 0.00 0.00 4.04
44 45 1.537202 GAAGCATTGCCAAACTCTCGT 59.463 47.619 4.70 0.00 0.00 4.18
45 46 1.609208 AGCATTGCCAAACTCTCGTT 58.391 45.000 4.70 0.00 34.03 3.85
46 47 1.956477 AGCATTGCCAAACTCTCGTTT 59.044 42.857 4.70 0.00 43.85 3.60
47 48 2.030805 AGCATTGCCAAACTCTCGTTTC 60.031 45.455 4.70 0.00 41.23 2.78
48 49 2.922335 GCATTGCCAAACTCTCGTTTCC 60.922 50.000 0.00 0.00 41.23 3.13
49 50 2.045561 TTGCCAAACTCTCGTTTCCA 57.954 45.000 0.00 0.00 41.23 3.53
50 51 2.045561 TGCCAAACTCTCGTTTCCAA 57.954 45.000 0.00 0.00 41.23 3.53
78 79 9.588096 AGTTTGTATAGGATTTATTCCCAATCC 57.412 33.333 3.82 3.82 46.81 3.01
171 172 6.327279 AGGCACCACTAAAATGTTAGTTTC 57.673 37.500 5.50 0.00 46.38 2.78
180 183 3.619233 AATGTTAGTTTCGGCACACAC 57.381 42.857 0.00 0.00 0.00 3.82
213 216 7.539712 AATTTATACTTGAGGTCACGACATG 57.460 36.000 0.00 0.00 0.00 3.21
308 312 4.567959 TGATGCATATAAATCGAGCGATGG 59.432 41.667 6.11 0.00 34.70 3.51
318 322 1.757118 TCGAGCGATGGAGGAAATTCT 59.243 47.619 0.00 0.00 0.00 2.40
487 493 5.535753 AGCATATTTTATTCCCCAGTTGC 57.464 39.130 0.00 0.00 0.00 4.17
489 495 4.795962 GCATATTTTATTCCCCAGTTGCCG 60.796 45.833 0.00 0.00 0.00 5.69
579 585 9.872757 TTTTTCTGTATAAACACGATCACTTTC 57.127 29.630 0.00 0.00 0.00 2.62
580 586 8.827177 TTTCTGTATAAACACGATCACTTTCT 57.173 30.769 0.00 0.00 0.00 2.52
591 597 9.653287 AACACGATCACTTTCTAAAATATGAGA 57.347 29.630 0.00 0.00 0.00 3.27
611 617 3.824443 AGAGTACCATTTTTCCCCAAACG 59.176 43.478 0.00 0.00 0.00 3.60
750 757 0.178987 TAAGCTGGTTTTGGGCCGAA 60.179 50.000 0.79 0.79 0.00 4.30
813 820 2.434185 CGTTTCTGCAGGCGGCTA 60.434 61.111 12.74 0.00 45.15 3.93
831 847 0.681887 TATCGTTCGAGCCCACCTCA 60.682 55.000 0.80 0.00 40.78 3.86
874 890 1.875364 CCCGTAACCGTAAGAGCGC 60.875 63.158 0.00 0.00 43.02 5.92
1181 1197 1.617839 CCTCTTTCCCTCCCAGCCT 60.618 63.158 0.00 0.00 0.00 4.58
1198 1214 2.754254 TTCTCCCGCTCGCAGCTA 60.754 61.111 6.58 0.00 39.60 3.32
1359 1381 3.134458 GGTTCTGACTTCTGAGTGTTGG 58.866 50.000 0.00 0.00 35.88 3.77
1365 1387 3.195661 GACTTCTGAGTGTTGGTTTCGT 58.804 45.455 0.00 0.00 35.88 3.85
1530 1552 4.074970 CAGGTCACCTTTTCAGTGCTAAT 58.925 43.478 0.00 0.00 35.14 1.73
1534 1556 6.098266 AGGTCACCTTTTCAGTGCTAATTTTT 59.902 34.615 0.00 0.00 35.14 1.94
1563 1585 2.101125 CGTCGTCTTGTTTTGCTTGTG 58.899 47.619 0.00 0.00 0.00 3.33
1572 1611 0.459237 TTTTGCTTGTGTTGCCGGTG 60.459 50.000 1.90 0.00 0.00 4.94
1584 1623 4.007644 CCGGTGGCTGTGCTGAGA 62.008 66.667 0.00 0.00 0.00 3.27
1587 1626 1.670406 GGTGGCTGTGCTGAGACAG 60.670 63.158 7.42 7.42 45.34 3.51
1611 1654 1.196354 GCTGTGTTGTGTCTGCAGATC 59.804 52.381 21.47 16.26 0.00 2.75
1620 1663 0.247736 GTCTGCAGATCCTGTTCGGT 59.752 55.000 21.47 0.00 33.43 4.69
1683 1726 3.254060 CGTCAAGACTGAAGTGGTATGG 58.746 50.000 0.00 0.00 31.88 2.74
1698 1742 3.446873 TGGTATGGGTGCAAATTGATGAC 59.553 43.478 0.00 0.00 0.00 3.06
1699 1743 3.446873 GGTATGGGTGCAAATTGATGACA 59.553 43.478 0.00 0.00 0.00 3.58
1700 1744 4.099881 GGTATGGGTGCAAATTGATGACAT 59.900 41.667 0.00 0.00 0.00 3.06
1701 1745 4.829872 ATGGGTGCAAATTGATGACATT 57.170 36.364 0.00 0.00 0.00 2.71
1715 1759 9.657419 AATTGATGACATTTTTCACCTAATTCC 57.343 29.630 0.00 0.00 0.00 3.01
1718 1762 4.520874 TGACATTTTTCACCTAATTCCGCA 59.479 37.500 0.00 0.00 0.00 5.69
1719 1763 5.059404 ACATTTTTCACCTAATTCCGCAG 57.941 39.130 0.00 0.00 0.00 5.18
1720 1764 3.569250 TTTTTCACCTAATTCCGCAGC 57.431 42.857 0.00 0.00 0.00 5.25
1721 1765 2.192664 TTTCACCTAATTCCGCAGCA 57.807 45.000 0.00 0.00 0.00 4.41
1738 1782 4.556135 CGCAGCATTAGTTTCACAATTCTG 59.444 41.667 0.00 0.00 31.25 3.02
1813 1860 1.687563 AGGGACTCCAAAACCGTTTG 58.312 50.000 0.00 0.00 43.26 2.93
2193 2408 5.664294 ACATACCATTCCGTTAGTACACA 57.336 39.130 0.00 0.00 0.00 3.72
2204 2419 4.056050 CGTTAGTACACACCTTTTGCTCT 58.944 43.478 0.00 0.00 0.00 4.09
2445 2660 2.682856 AGTACAGGTGTGTTGTGCTTTG 59.317 45.455 0.00 0.00 38.13 2.77
2517 2788 2.025037 TGGTTCCTTCTAGCATGCCAAT 60.025 45.455 15.66 0.00 0.00 3.16
2555 2826 6.723298 TTTCACAAATGTCATGTAGGGTTT 57.277 33.333 0.00 0.00 0.00 3.27
2629 2902 1.176527 CCAGTGTGCATTGTAAGGGG 58.823 55.000 0.00 0.00 0.00 4.79
2631 2904 2.238521 CAGTGTGCATTGTAAGGGGTT 58.761 47.619 0.00 0.00 0.00 4.11
2665 2938 8.917088 CCCTCATTTGGACAGTATGATTTATTT 58.083 33.333 0.00 0.00 39.69 1.40
2695 2968 6.291067 TCTGCTAAATGCGAGTTCATTATG 57.709 37.500 0.00 0.00 46.63 1.90
2696 2969 4.847633 TGCTAAATGCGAGTTCATTATGC 58.152 39.130 0.00 0.00 46.63 3.14
2698 2971 4.908156 GCTAAATGCGAGTTCATTATGCAG 59.092 41.667 0.00 0.00 39.17 4.41
2719 2992 8.183104 TGCAGCAGTTCTAGTATATGAGTATT 57.817 34.615 0.00 0.00 0.00 1.89
2720 2993 8.084684 TGCAGCAGTTCTAGTATATGAGTATTG 58.915 37.037 0.00 0.00 0.00 1.90
2721 2994 8.300286 GCAGCAGTTCTAGTATATGAGTATTGA 58.700 37.037 0.00 0.00 0.00 2.57
2758 3031 7.029563 CCATTTTACATGGAAAAGCTAGTGAC 58.970 38.462 20.15 0.00 41.64 3.67
2786 3059 8.737168 TTGATATAAAAATGTGTCCTCAGGAG 57.263 34.615 0.00 0.00 29.39 3.69
2836 3109 1.108727 TGTTGCTTGGGAAGTGGCTG 61.109 55.000 0.00 0.00 0.00 4.85
2861 3134 6.156949 GGATGGCCAGATGGATAAGAAGTATA 59.843 42.308 13.05 0.00 37.39 1.47
3062 3336 2.026822 CCCAGTATATCACATCCCAGCC 60.027 54.545 0.00 0.00 0.00 4.85
3257 3538 8.018677 CACTACAAGTGGTTTAAGTGAGTATG 57.981 38.462 0.00 0.00 42.35 2.39
3258 3539 5.941948 ACAAGTGGTTTAAGTGAGTATGC 57.058 39.130 0.00 0.00 0.00 3.14
3259 3540 5.621193 ACAAGTGGTTTAAGTGAGTATGCT 58.379 37.500 0.00 0.00 0.00 3.79
3320 3601 7.643569 TTGTGGTGAAGATATGCATGTAAAT 57.356 32.000 10.16 0.00 0.00 1.40
3321 3602 7.643569 TGTGGTGAAGATATGCATGTAAATT 57.356 32.000 10.16 0.00 0.00 1.82
3322 3603 8.744568 TGTGGTGAAGATATGCATGTAAATTA 57.255 30.769 10.16 0.00 0.00 1.40
3323 3604 9.353431 TGTGGTGAAGATATGCATGTAAATTAT 57.647 29.630 10.16 0.00 0.00 1.28
3343 3624 9.921637 AAATTATTATTTTCGAAACAGAGGCAA 57.078 25.926 10.79 0.00 29.68 4.52
3344 3625 9.921637 AATTATTATTTTCGAAACAGAGGCAAA 57.078 25.926 10.79 0.00 0.00 3.68
3345 3626 9.921637 ATTATTATTTTCGAAACAGAGGCAAAA 57.078 25.926 10.79 0.00 0.00 2.44
3346 3627 7.873739 ATTATTTTCGAAACAGAGGCAAAAG 57.126 32.000 10.79 0.00 0.00 2.27
3347 3628 4.974368 TTTTCGAAACAGAGGCAAAAGA 57.026 36.364 10.79 0.00 0.00 2.52
3348 3629 5.514274 TTTTCGAAACAGAGGCAAAAGAT 57.486 34.783 10.79 0.00 0.00 2.40
3349 3630 5.514274 TTTCGAAACAGAGGCAAAAGATT 57.486 34.783 6.47 0.00 0.00 2.40
3350 3631 5.514274 TTCGAAACAGAGGCAAAAGATTT 57.486 34.783 0.00 0.00 0.00 2.17
3351 3632 4.858935 TCGAAACAGAGGCAAAAGATTTG 58.141 39.130 0.00 0.00 0.00 2.32
3352 3633 3.426525 CGAAACAGAGGCAAAAGATTTGC 59.573 43.478 17.18 17.18 44.22 3.68
3360 3641 3.492421 GCAAAAGATTTGCCTCATCGA 57.508 42.857 15.12 0.00 39.38 3.59
3361 3642 4.037858 GCAAAAGATTTGCCTCATCGAT 57.962 40.909 15.12 0.00 39.38 3.59
3362 3643 4.427312 GCAAAAGATTTGCCTCATCGATT 58.573 39.130 15.12 0.00 39.38 3.34
3363 3644 5.581605 GCAAAAGATTTGCCTCATCGATTA 58.418 37.500 15.12 0.00 39.38 1.75
3364 3645 6.035843 GCAAAAGATTTGCCTCATCGATTAA 58.964 36.000 15.12 0.00 39.38 1.40
3365 3646 6.698766 GCAAAAGATTTGCCTCATCGATTAAT 59.301 34.615 15.12 0.00 39.38 1.40
3366 3647 7.223387 GCAAAAGATTTGCCTCATCGATTAATT 59.777 33.333 15.12 0.00 39.38 1.40
3367 3648 9.734620 CAAAAGATTTGCCTCATCGATTAATTA 57.265 29.630 0.00 0.00 0.00 1.40
3369 3650 9.956720 AAAGATTTGCCTCATCGATTAATTAAG 57.043 29.630 3.94 0.00 0.00 1.85
3370 3651 8.908786 AGATTTGCCTCATCGATTAATTAAGA 57.091 30.769 3.94 0.00 0.00 2.10
3371 3652 9.342308 AGATTTGCCTCATCGATTAATTAAGAA 57.658 29.630 3.94 0.00 0.00 2.52
3372 3653 9.604626 GATTTGCCTCATCGATTAATTAAGAAG 57.395 33.333 3.94 0.00 0.00 2.85
3373 3654 8.731275 TTTGCCTCATCGATTAATTAAGAAGA 57.269 30.769 3.94 3.72 0.00 2.87
3374 3655 7.953158 TGCCTCATCGATTAATTAAGAAGAG 57.047 36.000 3.94 8.02 0.00 2.85
3375 3656 7.726216 TGCCTCATCGATTAATTAAGAAGAGA 58.274 34.615 15.75 7.07 32.21 3.10
3376 3657 8.204160 TGCCTCATCGATTAATTAAGAAGAGAA 58.796 33.333 15.75 6.31 32.21 2.87
3377 3658 9.213799 GCCTCATCGATTAATTAAGAAGAGAAT 57.786 33.333 15.75 0.00 32.21 2.40
3381 3662 9.604626 CATCGATTAATTAAGAAGAGAATTGCC 57.395 33.333 3.94 0.00 0.00 4.52
3382 3663 8.154649 TCGATTAATTAAGAAGAGAATTGCCC 57.845 34.615 3.94 0.00 0.00 5.36
3383 3664 7.773224 TCGATTAATTAAGAAGAGAATTGCCCA 59.227 33.333 3.94 0.00 0.00 5.36
3384 3665 8.072567 CGATTAATTAAGAAGAGAATTGCCCAG 58.927 37.037 3.94 0.00 0.00 4.45
3385 3666 8.829373 ATTAATTAAGAAGAGAATTGCCCAGT 57.171 30.769 3.94 0.00 0.00 4.00
3386 3667 8.650143 TTAATTAAGAAGAGAATTGCCCAGTT 57.350 30.769 0.00 0.00 0.00 3.16
3387 3668 9.747898 TTAATTAAGAAGAGAATTGCCCAGTTA 57.252 29.630 0.00 0.00 0.00 2.24
3388 3669 8.650143 AATTAAGAAGAGAATTGCCCAGTTAA 57.350 30.769 0.00 0.00 0.00 2.01
3389 3670 8.829373 ATTAAGAAGAGAATTGCCCAGTTAAT 57.171 30.769 0.00 0.00 0.00 1.40
3390 3671 8.650143 TTAAGAAGAGAATTGCCCAGTTAATT 57.350 30.769 0.00 0.00 0.00 1.40
3391 3672 9.747898 TTAAGAAGAGAATTGCCCAGTTAATTA 57.252 29.630 0.00 0.00 0.00 1.40
3392 3673 8.650143 AAGAAGAGAATTGCCCAGTTAATTAA 57.350 30.769 0.00 0.00 0.00 1.40
3393 3674 8.829373 AGAAGAGAATTGCCCAGTTAATTAAT 57.171 30.769 0.31 0.00 0.00 1.40
3394 3675 8.689972 AGAAGAGAATTGCCCAGTTAATTAATG 58.310 33.333 0.31 1.65 0.00 1.90
3395 3676 7.352079 AGAGAATTGCCCAGTTAATTAATGG 57.648 36.000 14.75 14.75 0.00 3.16
3396 3677 7.125391 AGAGAATTGCCCAGTTAATTAATGGA 58.875 34.615 19.80 7.88 36.09 3.41
3397 3678 7.619302 AGAGAATTGCCCAGTTAATTAATGGAA 59.381 33.333 19.80 12.04 36.09 3.53
3398 3679 8.144862 AGAATTGCCCAGTTAATTAATGGAAA 57.855 30.769 19.80 13.86 36.09 3.13
3399 3680 8.601546 AGAATTGCCCAGTTAATTAATGGAAAA 58.398 29.630 19.80 15.33 36.09 2.29
3400 3681 8.560355 AATTGCCCAGTTAATTAATGGAAAAC 57.440 30.769 19.80 3.46 36.09 2.43
3401 3682 6.043854 TGCCCAGTTAATTAATGGAAAACC 57.956 37.500 19.80 0.00 36.09 3.27
3402 3683 5.106442 GCCCAGTTAATTAATGGAAAACCG 58.894 41.667 19.80 9.29 36.09 4.44
3403 3684 5.656480 CCCAGTTAATTAATGGAAAACCGG 58.344 41.667 19.80 0.00 36.09 5.28
3404 3685 5.394773 CCCAGTTAATTAATGGAAAACCGGG 60.395 44.000 19.80 9.08 36.09 5.73
3405 3686 5.106442 CAGTTAATTAATGGAAAACCGGGC 58.894 41.667 6.32 0.00 0.00 6.13
3406 3687 2.951457 AATTAATGGAAAACCGGGCG 57.049 45.000 6.32 0.00 0.00 6.13
3407 3688 2.131776 ATTAATGGAAAACCGGGCGA 57.868 45.000 6.32 0.00 0.00 5.54
3408 3689 1.906990 TTAATGGAAAACCGGGCGAA 58.093 45.000 6.32 0.00 0.00 4.70
3409 3690 1.906990 TAATGGAAAACCGGGCGAAA 58.093 45.000 6.32 0.00 0.00 3.46
3410 3691 1.041437 AATGGAAAACCGGGCGAAAA 58.959 45.000 6.32 0.00 0.00 2.29
3411 3692 0.315886 ATGGAAAACCGGGCGAAAAC 59.684 50.000 6.32 0.00 0.00 2.43
3412 3693 1.007038 GGAAAACCGGGCGAAAACC 60.007 57.895 6.32 0.00 0.00 3.27
3419 3700 4.211986 GGGCGAAAACCGAGCATA 57.788 55.556 0.00 0.00 41.76 3.14
3420 3701 2.702847 GGGCGAAAACCGAGCATAT 58.297 52.632 0.00 0.00 41.76 1.78
3421 3702 0.307760 GGGCGAAAACCGAGCATATG 59.692 55.000 0.00 0.00 41.76 1.78
3422 3703 0.317020 GGCGAAAACCGAGCATATGC 60.317 55.000 20.36 20.36 41.76 3.14
3423 3704 0.376852 GCGAAAACCGAGCATATGCA 59.623 50.000 28.62 0.00 41.76 3.96
3424 3705 1.202132 GCGAAAACCGAGCATATGCAA 60.202 47.619 28.62 0.00 41.76 4.08
3425 3706 2.730715 GCGAAAACCGAGCATATGCAAA 60.731 45.455 28.62 0.00 41.76 3.68
3426 3707 3.497118 CGAAAACCGAGCATATGCAAAA 58.503 40.909 28.62 0.00 45.16 2.44
3427 3708 3.917380 CGAAAACCGAGCATATGCAAAAA 59.083 39.130 28.62 0.00 45.16 1.94
3428 3709 4.030529 CGAAAACCGAGCATATGCAAAAAG 59.969 41.667 28.62 14.55 45.16 2.27
3439 3720 5.232838 GCATATGCAAAAAGTTCACCATAGC 59.767 40.000 22.84 0.00 41.59 2.97
3464 3745 7.360438 GCTGTTCTCTAAACTGTATGGTTCTTG 60.360 40.741 0.00 0.00 0.00 3.02
3611 3895 6.019479 CCATTCTCAGTAAAGAGCGTATGTTC 60.019 42.308 0.00 0.00 35.59 3.18
3664 3948 7.113404 CACATCATTTGGAACTGTTCTTTTACG 59.887 37.037 19.05 5.53 0.00 3.18
3665 3949 6.687081 TCATTTGGAACTGTTCTTTTACGT 57.313 33.333 19.05 0.00 0.00 3.57
3852 4136 5.065731 CCTACAGATGCTGGAAATGAAGTTC 59.934 44.000 0.00 0.00 35.51 3.01
3923 4207 5.116882 AGAACACAGTTTCCAACAGTAGTC 58.883 41.667 0.00 0.00 29.39 2.59
3937 4221 3.006967 ACAGTAGTCAGGTAAGGCAACAG 59.993 47.826 0.00 0.00 41.41 3.16
3946 4230 2.490903 GGTAAGGCAACAGACTCGTCTA 59.509 50.000 0.00 0.00 37.98 2.59
3950 4234 4.273148 AGGCAACAGACTCGTCTAAATT 57.727 40.909 0.00 0.00 37.98 1.82
3952 4236 3.424962 GGCAACAGACTCGTCTAAATTGC 60.425 47.826 22.08 22.08 43.75 3.56
3971 4255 3.565307 TGCTTTTCCACCTCAAATCAGT 58.435 40.909 0.00 0.00 0.00 3.41
3976 4260 0.518636 CCACCTCAAATCAGTGTGCG 59.481 55.000 0.00 0.00 0.00 5.34
3977 4261 0.110056 CACCTCAAATCAGTGTGCGC 60.110 55.000 0.00 0.00 0.00 6.09
3982 4266 2.068519 TCAAATCAGTGTGCGCTAGTG 58.931 47.619 9.73 11.23 0.00 2.74
3987 4271 0.319040 CAGTGTGCGCTAGTGACTGT 60.319 55.000 9.73 0.00 31.33 3.55
4001 4285 5.248870 AGTGACTGTTTGAACAAATCACC 57.751 39.130 23.65 13.83 46.25 4.02
4019 4303 5.047566 TCACCCATGGTCATGTTTATAGG 57.952 43.478 11.73 5.46 37.11 2.57
4024 4308 4.206375 CATGGTCATGTTTATAGGGTGCA 58.794 43.478 2.97 0.00 34.23 4.57
4032 4316 5.435686 TGTTTATAGGGTGCATCTGTTCT 57.564 39.130 0.00 0.00 0.00 3.01
4112 4397 3.234386 GCGGTAGCTGTTTGAACAAATC 58.766 45.455 0.00 0.00 38.66 2.17
4114 4399 4.466828 CGGTAGCTGTTTGAACAAATCAG 58.533 43.478 17.05 17.05 39.77 2.90
4179 4472 8.788813 CGCTGTTTTTGAAGATTATATGTGTTC 58.211 33.333 0.00 0.00 0.00 3.18
4195 4488 1.768275 TGTTCCTTCAGAGGTGCTTCA 59.232 47.619 0.00 0.00 43.97 3.02
4314 4609 5.508489 CGTTTATCCTTCTACCGCCTATTCA 60.508 44.000 0.00 0.00 0.00 2.57
4342 4637 2.954753 CTGTTGTTCGCGCACCTCC 61.955 63.158 8.75 0.00 0.00 4.30
4401 4696 5.032327 ACCCCTATGTCGATAAAAAGGAC 57.968 43.478 9.30 0.00 0.00 3.85
4505 4806 3.110705 AGAACCCTGATACAGACAGCAT 58.889 45.455 0.00 0.00 32.44 3.79
4506 4807 2.996249 ACCCTGATACAGACAGCATG 57.004 50.000 0.00 0.00 46.00 4.06
4507 4808 1.134280 ACCCTGATACAGACAGCATGC 60.134 52.381 10.51 10.51 42.53 4.06
4510 4811 2.159000 CCTGATACAGACAGCATGCAGA 60.159 50.000 21.98 0.00 42.53 4.26
4511 4812 3.124560 CTGATACAGACAGCATGCAGAG 58.875 50.000 21.98 11.80 42.53 3.35
4512 4813 2.762327 TGATACAGACAGCATGCAGAGA 59.238 45.455 21.98 0.00 42.53 3.10
4513 4814 2.955477 TACAGACAGCATGCAGAGAG 57.045 50.000 21.98 9.13 42.53 3.20
4514 4815 0.249676 ACAGACAGCATGCAGAGAGG 59.750 55.000 21.98 7.08 42.53 3.69
4515 4816 0.249676 CAGACAGCATGCAGAGAGGT 59.750 55.000 21.98 7.62 42.53 3.85
4541 4842 9.436957 TTTCTCTAAATCTGAAACCATGTACTC 57.563 33.333 0.00 0.00 0.00 2.59
4542 4843 7.258441 TCTCTAAATCTGAAACCATGTACTCG 58.742 38.462 0.00 0.00 0.00 4.18
4555 4919 2.816411 TGTACTCGGAGGGACATCTTT 58.184 47.619 10.23 0.00 0.00 2.52
4556 4920 2.496070 TGTACTCGGAGGGACATCTTTG 59.504 50.000 10.23 0.00 0.00 2.77
4557 4921 1.645710 ACTCGGAGGGACATCTTTGT 58.354 50.000 10.23 0.00 39.32 2.83
4607 4971 5.064452 CCTGTCAGCATAGATGAAAACAGTC 59.936 44.000 13.14 0.00 33.68 3.51
4608 4972 5.550290 TGTCAGCATAGATGAAAACAGTCA 58.450 37.500 0.00 0.00 26.97 3.41
4609 4973 5.640783 TGTCAGCATAGATGAAAACAGTCAG 59.359 40.000 0.00 0.00 26.97 3.51
4610 4974 4.633126 TCAGCATAGATGAAAACAGTCAGC 59.367 41.667 0.00 0.00 34.06 4.26
4611 4975 4.393990 CAGCATAGATGAAAACAGTCAGCA 59.606 41.667 0.00 0.00 36.36 4.41
4612 4976 5.005740 AGCATAGATGAAAACAGTCAGCAA 58.994 37.500 0.00 0.00 36.36 3.91
4613 4977 5.091431 GCATAGATGAAAACAGTCAGCAAC 58.909 41.667 0.00 0.00 36.36 4.17
4627 4999 5.376947 GTCAGCAACTATGACGTTGTATC 57.623 43.478 5.68 0.00 44.61 2.24
4641 5013 4.929808 ACGTTGTATCATCTTCCTTGTGTC 59.070 41.667 0.00 0.00 0.00 3.67
4650 5022 2.972713 TCTTCCTTGTGTCTAGCCACTT 59.027 45.455 5.39 0.00 36.30 3.16
4651 5023 2.839486 TCCTTGTGTCTAGCCACTTG 57.161 50.000 5.39 0.00 36.30 3.16
4652 5024 1.160137 CCTTGTGTCTAGCCACTTGC 58.840 55.000 5.39 0.00 41.71 4.01
4708 5084 6.524101 TGGAAATTTATACCAGCAAGTTCC 57.476 37.500 6.44 6.44 42.44 3.62
4762 5138 5.533903 AGACAAAAGCAGTTCATCAGTTGAT 59.466 36.000 0.00 0.00 33.34 2.57
4785 5161 5.188434 TCCAACATCTTCATAAGGCAGAAG 58.812 41.667 0.00 0.00 41.95 2.85
4787 5163 4.500499 ACATCTTCATAAGGCAGAAGCT 57.500 40.909 0.00 0.00 40.72 3.74
4792 5168 4.697352 TCTTCATAAGGCAGAAGCTTGAAC 59.303 41.667 2.10 0.00 40.72 3.18
4794 5170 4.592942 TCATAAGGCAGAAGCTTGAACAT 58.407 39.130 2.10 0.00 41.70 2.71
4854 5231 9.090692 CCGAATCTGAATTTTGAAATAAGCAAT 57.909 29.630 0.00 0.00 0.00 3.56
4893 5280 1.043022 CCCTTTTGACCTGCTTGCTT 58.957 50.000 0.00 0.00 0.00 3.91
4896 5283 3.534554 CCTTTTGACCTGCTTGCTTTTT 58.465 40.909 0.00 0.00 0.00 1.94
4951 5411 3.405831 TGCTTGTCTTCTTCATGGACTG 58.594 45.455 0.00 0.00 0.00 3.51
4971 5431 1.282875 GTCGCACAAGGCCTTTGAC 59.717 57.895 17.61 16.99 39.21 3.18
4977 5437 3.205338 GCACAAGGCCTTTGACAAATTT 58.795 40.909 17.61 0.00 39.21 1.82
5037 5504 1.202203 CACACTCGTTTCGTTCCGAA 58.798 50.000 0.00 0.00 44.28 4.30
5038 5505 1.071698 CACACTCGTTTCGTTCCGAAC 60.072 52.381 0.76 0.76 45.64 3.95
5039 5506 1.202203 CACTCGTTTCGTTCCGAACA 58.798 50.000 11.74 0.00 45.64 3.18
5040 5507 1.189446 CACTCGTTTCGTTCCGAACAG 59.811 52.381 11.74 4.73 45.64 3.16
5042 5509 1.203313 CGTTTCGTTCCGAACAGCC 59.797 57.895 11.74 0.00 45.64 4.85
5043 5510 1.572941 GTTTCGTTCCGAACAGCCC 59.427 57.895 11.74 0.00 45.64 5.19
5044 5511 1.598685 TTTCGTTCCGAACAGCCCC 60.599 57.895 11.74 0.00 45.64 5.80
5088 5567 1.330155 TCCCCAATCTCCTCCTACCT 58.670 55.000 0.00 0.00 0.00 3.08
5212 5691 1.134670 CAGGTTCGGTTCTCCATCTCC 60.135 57.143 0.00 0.00 0.00 3.71
5215 5694 1.137282 GTTCGGTTCTCCATCTCCTCC 59.863 57.143 0.00 0.00 0.00 4.30
5220 5699 3.592865 GGTTCTCCATCTCCTCCCTAAT 58.407 50.000 0.00 0.00 0.00 1.73
5221 5700 3.580895 GGTTCTCCATCTCCTCCCTAATC 59.419 52.174 0.00 0.00 0.00 1.75
5222 5701 4.488770 GTTCTCCATCTCCTCCCTAATCT 58.511 47.826 0.00 0.00 0.00 2.40
5228 5707 4.408276 CATCTCCTCCCTAATCTTCCGTA 58.592 47.826 0.00 0.00 0.00 4.02
5231 5710 3.507411 TCCTCCCTAATCTTCCGTATGG 58.493 50.000 0.00 0.00 0.00 2.74
5265 5744 2.279451 CGCACGCTAGCATAGGCA 60.279 61.111 16.45 0.00 44.61 4.75
5266 5745 2.589492 CGCACGCTAGCATAGGCAC 61.589 63.158 16.45 0.00 44.61 5.01
5267 5746 1.227380 GCACGCTAGCATAGGCACT 60.227 57.895 16.45 0.00 44.61 4.40
5268 5747 0.811616 GCACGCTAGCATAGGCACTT 60.812 55.000 16.45 0.00 44.61 3.16
5304 5783 3.399181 CCGGCTTACAGAGGGCCA 61.399 66.667 6.18 0.00 45.50 5.36
5307 5786 1.745489 GGCTTACAGAGGGCCAACG 60.745 63.158 6.18 0.00 44.69 4.10
5325 5804 1.458588 GGGGAGGGCAGAGGAGTAG 60.459 68.421 0.00 0.00 0.00 2.57
5326 5805 1.311747 GGGAGGGCAGAGGAGTAGT 59.688 63.158 0.00 0.00 0.00 2.73
5327 5806 0.556747 GGGAGGGCAGAGGAGTAGTA 59.443 60.000 0.00 0.00 0.00 1.82
5328 5807 1.694844 GGAGGGCAGAGGAGTAGTAC 58.305 60.000 0.00 0.00 0.00 2.73
5329 5808 1.215924 GGAGGGCAGAGGAGTAGTACT 59.784 57.143 1.37 1.37 0.00 2.73
5330 5809 2.442502 GGAGGGCAGAGGAGTAGTACTA 59.557 54.545 1.88 0.00 0.00 1.82
5331 5810 3.074836 GGAGGGCAGAGGAGTAGTACTAT 59.925 52.174 5.75 0.00 0.00 2.12
5332 5811 4.448054 GGAGGGCAGAGGAGTAGTACTATT 60.448 50.000 5.75 0.94 0.00 1.73
5333 5812 5.141910 GAGGGCAGAGGAGTAGTACTATTT 58.858 45.833 5.75 0.00 0.00 1.40
5334 5813 5.530243 AGGGCAGAGGAGTAGTACTATTTT 58.470 41.667 5.75 0.00 0.00 1.82
5335 5814 5.965091 AGGGCAGAGGAGTAGTACTATTTTT 59.035 40.000 5.75 0.00 0.00 1.94
5336 5815 6.049790 GGGCAGAGGAGTAGTACTATTTTTG 58.950 44.000 5.75 2.46 0.00 2.44
5337 5816 5.524281 GGCAGAGGAGTAGTACTATTTTTGC 59.476 44.000 5.75 11.07 0.00 3.68
5338 5817 6.106673 GCAGAGGAGTAGTACTATTTTTGCA 58.893 40.000 5.75 0.00 0.00 4.08
5339 5818 6.594159 GCAGAGGAGTAGTACTATTTTTGCAA 59.406 38.462 5.75 0.00 0.00 4.08
5340 5819 7.281100 GCAGAGGAGTAGTACTATTTTTGCAAT 59.719 37.037 5.75 0.00 0.00 3.56
5341 5820 9.167311 CAGAGGAGTAGTACTATTTTTGCAATT 57.833 33.333 5.75 0.00 0.00 2.32
5357 5836 7.605410 TTTGCAATTACTAACTAGTACCAGC 57.395 36.000 0.00 2.52 38.43 4.85
5358 5837 6.540438 TGCAATTACTAACTAGTACCAGCT 57.460 37.500 0.00 0.00 38.43 4.24
5359 5838 6.338146 TGCAATTACTAACTAGTACCAGCTG 58.662 40.000 6.78 6.78 38.43 4.24
5360 5839 5.234543 GCAATTACTAACTAGTACCAGCTGC 59.765 44.000 8.66 0.00 38.43 5.25
5361 5840 6.574350 CAATTACTAACTAGTACCAGCTGCT 58.426 40.000 8.66 2.52 38.43 4.24
5362 5841 5.578005 TTACTAACTAGTACCAGCTGCTG 57.422 43.478 22.44 22.44 38.43 4.41
5363 5842 2.166664 ACTAACTAGTACCAGCTGCTGC 59.833 50.000 23.86 10.69 34.13 5.25
5364 5843 4.131110 ACTAACTAGTACCAGCTGCTGCT 61.131 47.826 23.86 17.19 42.01 4.24
5365 5844 5.597905 ACTAACTAGTACCAGCTGCTGCTT 61.598 45.833 23.86 14.71 40.39 3.91
5366 5845 7.578928 ACTAACTAGTACCAGCTGCTGCTTG 62.579 48.000 23.86 15.07 40.39 4.01
5373 5852 2.598394 GCTGCTGCTTGGGTTGGA 60.598 61.111 8.53 0.00 36.03 3.53
5374 5853 2.633509 GCTGCTGCTTGGGTTGGAG 61.634 63.158 8.53 0.00 36.03 3.86
5375 5854 2.598394 TGCTGCTTGGGTTGGAGC 60.598 61.111 0.00 0.00 46.71 4.70
5376 5855 3.376918 GCTGCTTGGGTTGGAGCC 61.377 66.667 0.00 0.00 41.93 4.70
5377 5856 2.115910 CTGCTTGGGTTGGAGCCA 59.884 61.111 0.00 0.00 45.25 4.75
5384 5863 2.991540 GGTTGGAGCCAAGCCCAC 60.992 66.667 18.19 0.38 45.43 4.61
5385 5864 2.991540 GTTGGAGCCAAGCCCACC 60.992 66.667 1.41 0.00 36.52 4.61
5386 5865 3.185203 TTGGAGCCAAGCCCACCT 61.185 61.111 0.00 0.00 30.91 4.00
5387 5866 3.210012 TTGGAGCCAAGCCCACCTC 62.210 63.158 0.00 0.00 30.91 3.85
5388 5867 3.334054 GGAGCCAAGCCCACCTCT 61.334 66.667 0.00 0.00 0.00 3.69
5389 5868 1.995626 GGAGCCAAGCCCACCTCTA 60.996 63.158 0.00 0.00 0.00 2.43
5390 5869 1.348775 GGAGCCAAGCCCACCTCTAT 61.349 60.000 0.00 0.00 0.00 1.98
5391 5870 1.424638 GAGCCAAGCCCACCTCTATA 58.575 55.000 0.00 0.00 0.00 1.31
5392 5871 1.346068 GAGCCAAGCCCACCTCTATAG 59.654 57.143 0.00 0.00 0.00 1.31
5406 5885 5.132897 CCTCTATAGGCTTTAGTGCAGAG 57.867 47.826 11.07 3.89 35.64 3.35
5407 5886 4.021544 CCTCTATAGGCTTTAGTGCAGAGG 60.022 50.000 11.07 8.61 40.58 3.69
5408 5887 3.898123 TCTATAGGCTTTAGTGCAGAGGG 59.102 47.826 11.07 0.00 34.04 4.30
5409 5888 2.247699 TAGGCTTTAGTGCAGAGGGA 57.752 50.000 0.00 0.00 34.04 4.20
5410 5889 1.362224 AGGCTTTAGTGCAGAGGGAA 58.638 50.000 0.00 0.00 34.04 3.97
5411 5890 1.705186 AGGCTTTAGTGCAGAGGGAAA 59.295 47.619 0.00 0.00 34.04 3.13
5412 5891 2.310052 AGGCTTTAGTGCAGAGGGAAAT 59.690 45.455 0.00 0.00 34.04 2.17
5413 5892 2.685388 GGCTTTAGTGCAGAGGGAAATC 59.315 50.000 0.00 0.00 34.04 2.17
5414 5893 3.615155 GCTTTAGTGCAGAGGGAAATCT 58.385 45.455 0.00 0.00 0.00 2.40
5423 5902 2.844369 AGAGGGAAATCTGAGAAGCCT 58.156 47.619 0.00 0.00 0.00 4.58
5424 5903 2.504996 AGAGGGAAATCTGAGAAGCCTG 59.495 50.000 0.00 0.00 0.00 4.85
5425 5904 2.238395 GAGGGAAATCTGAGAAGCCTGT 59.762 50.000 0.00 0.00 0.00 4.00
5426 5905 2.646798 AGGGAAATCTGAGAAGCCTGTT 59.353 45.455 0.00 0.00 0.00 3.16
5427 5906 2.751806 GGGAAATCTGAGAAGCCTGTTG 59.248 50.000 0.00 0.00 0.00 3.33
5428 5907 3.416156 GGAAATCTGAGAAGCCTGTTGT 58.584 45.455 0.00 0.00 0.00 3.32
5429 5908 3.438434 GGAAATCTGAGAAGCCTGTTGTC 59.562 47.826 0.00 0.00 0.00 3.18
5430 5909 2.777832 ATCTGAGAAGCCTGTTGTCC 57.222 50.000 0.00 0.00 0.00 4.02
5431 5910 0.318441 TCTGAGAAGCCTGTTGTCCG 59.682 55.000 0.00 0.00 0.00 4.79
5432 5911 0.034059 CTGAGAAGCCTGTTGTCCGT 59.966 55.000 0.00 0.00 0.00 4.69
5433 5912 0.033504 TGAGAAGCCTGTTGTCCGTC 59.966 55.000 0.00 0.00 0.00 4.79
5434 5913 0.670854 GAGAAGCCTGTTGTCCGTCC 60.671 60.000 0.00 0.00 0.00 4.79
5435 5914 2.027625 GAAGCCTGTTGTCCGTCCG 61.028 63.158 0.00 0.00 0.00 4.79
5436 5915 2.710724 GAAGCCTGTTGTCCGTCCGT 62.711 60.000 0.00 0.00 0.00 4.69
5437 5916 2.710724 AAGCCTGTTGTCCGTCCGTC 62.711 60.000 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.065233 TGATGTATTGATCGGTGCAAAGC 59.935 43.478 0.00 0.00 0.00 3.51
1 2 4.880886 TGATGTATTGATCGGTGCAAAG 57.119 40.909 0.00 0.00 0.00 2.77
2 3 4.880696 TCATGATGTATTGATCGGTGCAAA 59.119 37.500 0.00 0.00 0.00 3.68
3 4 4.450053 TCATGATGTATTGATCGGTGCAA 58.550 39.130 0.00 0.00 0.00 4.08
4 5 4.070630 TCATGATGTATTGATCGGTGCA 57.929 40.909 0.00 0.00 0.00 4.57
5 6 4.612259 GCTTCATGATGTATTGATCGGTGC 60.612 45.833 10.05 0.00 0.00 5.01
6 7 4.512571 TGCTTCATGATGTATTGATCGGTG 59.487 41.667 10.05 0.00 0.00 4.94
7 8 4.707105 TGCTTCATGATGTATTGATCGGT 58.293 39.130 10.05 0.00 0.00 4.69
8 9 5.874895 ATGCTTCATGATGTATTGATCGG 57.125 39.130 10.05 0.00 0.00 4.18
9 10 5.567915 GCAATGCTTCATGATGTATTGATCG 59.432 40.000 35.41 20.80 39.29 3.69
10 11 5.862323 GGCAATGCTTCATGATGTATTGATC 59.138 40.000 35.41 26.83 39.29 2.92
11 12 5.303333 TGGCAATGCTTCATGATGTATTGAT 59.697 36.000 35.41 13.61 39.29 2.57
12 13 4.645588 TGGCAATGCTTCATGATGTATTGA 59.354 37.500 35.41 22.75 39.29 2.57
13 14 4.939271 TGGCAATGCTTCATGATGTATTG 58.061 39.130 30.95 30.95 39.64 1.90
14 15 5.601583 TTGGCAATGCTTCATGATGTATT 57.398 34.783 16.02 16.02 0.00 1.89
15 16 5.128171 AGTTTGGCAATGCTTCATGATGTAT 59.872 36.000 4.82 8.21 0.00 2.29
16 17 4.463539 AGTTTGGCAATGCTTCATGATGTA 59.536 37.500 4.82 6.18 0.00 2.29
17 18 3.259876 AGTTTGGCAATGCTTCATGATGT 59.740 39.130 4.82 0.00 0.00 3.06
18 19 3.857052 AGTTTGGCAATGCTTCATGATG 58.143 40.909 4.82 0.00 0.00 3.07
19 20 3.767673 AGAGTTTGGCAATGCTTCATGAT 59.232 39.130 4.82 0.00 0.00 2.45
20 21 3.159472 AGAGTTTGGCAATGCTTCATGA 58.841 40.909 4.82 0.00 0.00 3.07
21 22 3.508762 GAGAGTTTGGCAATGCTTCATG 58.491 45.455 4.82 0.00 0.00 3.07
22 23 2.163010 CGAGAGTTTGGCAATGCTTCAT 59.837 45.455 4.82 0.00 0.00 2.57
23 24 1.536766 CGAGAGTTTGGCAATGCTTCA 59.463 47.619 4.82 0.00 0.00 3.02
24 25 1.537202 ACGAGAGTTTGGCAATGCTTC 59.463 47.619 4.82 0.00 46.40 3.86
25 26 1.609208 ACGAGAGTTTGGCAATGCTT 58.391 45.000 4.82 0.00 46.40 3.91
26 27 3.329300 ACGAGAGTTTGGCAATGCT 57.671 47.368 4.82 2.30 46.40 3.79
46 47 9.403583 GGAATAAATCCTATACAAACTGTTGGA 57.596 33.333 1.05 0.00 45.56 3.53
78 79 1.238439 AACGTCAATGCCAACCTCTG 58.762 50.000 0.00 0.00 0.00 3.35
207 210 9.717892 AATATATAAGCGTCTATGTACATGTCG 57.282 33.333 18.81 18.34 0.00 4.35
415 419 6.250819 CGTGTGCCAGAAAGAACATAAATAG 58.749 40.000 0.00 0.00 0.00 1.73
430 434 0.725784 GAAATGTTCGCGTGTGCCAG 60.726 55.000 5.77 0.00 38.08 4.85
466 472 4.631131 GGCAACTGGGGAATAAAATATGC 58.369 43.478 0.00 0.00 0.00 3.14
487 493 3.403038 ACTTTGAAGAACTGATCACCGG 58.597 45.455 0.00 0.00 0.00 5.28
489 495 6.650807 TCATGTACTTTGAAGAACTGATCACC 59.349 38.462 0.00 0.00 0.00 4.02
555 561 8.827177 AGAAAGTGATCGTGTTTATACAGAAA 57.173 30.769 0.00 0.00 34.24 2.52
580 586 9.416284 GGGGAAAAATGGTACTCTCATATTTTA 57.584 33.333 0.00 0.00 32.46 1.52
591 597 3.568443 ACGTTTGGGGAAAAATGGTACT 58.432 40.909 0.00 0.00 31.55 2.73
611 617 9.507280 CATGTATCTCAACAAAAATGTCCATAC 57.493 33.333 0.00 0.00 32.02 2.39
750 757 1.414919 TCTGCGTAAACTGGAACTGGT 59.585 47.619 0.00 0.00 0.00 4.00
802 809 2.202878 GAACGATAGCCGCCTGCA 60.203 61.111 0.00 0.00 44.83 4.41
813 820 1.330655 ATGAGGTGGGCTCGAACGAT 61.331 55.000 0.00 0.00 0.00 3.73
831 847 2.194056 CTGCTCGGCCCATGGAAT 59.806 61.111 15.22 0.00 0.00 3.01
874 890 1.756408 TTGTGGGCATTGGGCTTGTG 61.756 55.000 0.00 0.00 44.01 3.33
943 959 0.741221 AGGCGGCTGAGACGATTTTC 60.741 55.000 14.07 0.00 35.20 2.29
1159 1175 1.616628 TGGGAGGGAAAGAGGGAGC 60.617 63.158 0.00 0.00 0.00 4.70
1161 1177 1.616628 GCTGGGAGGGAAAGAGGGA 60.617 63.158 0.00 0.00 0.00 4.20
1198 1214 4.626081 AGCAACAGCGCGGAGGTT 62.626 61.111 16.26 9.24 36.85 3.50
1301 1321 5.482006 GAATTCCAAATTCTCCACCCAAAG 58.518 41.667 5.39 0.00 0.00 2.77
1350 1372 1.066071 TCCACACGAAACCAACACTCA 60.066 47.619 0.00 0.00 0.00 3.41
1359 1381 1.535462 CATCCACCTTCCACACGAAAC 59.465 52.381 0.00 0.00 0.00 2.78
1365 1387 2.238521 GAAAAGCATCCACCTTCCACA 58.761 47.619 0.00 0.00 0.00 4.17
1534 1556 1.092921 ACAAGACGACGCTGGCAAAA 61.093 50.000 0.00 0.00 0.00 2.44
1544 1566 3.131240 ACACAAGCAAAACAAGACGAC 57.869 42.857 0.00 0.00 0.00 4.34
1572 1611 2.323580 GCACTGTCTCAGCACAGCC 61.324 63.158 2.01 0.00 46.81 4.85
1587 1626 1.010797 CAGACACAACACAGCGCAC 60.011 57.895 11.47 0.00 0.00 5.34
1594 1633 1.802960 CAGGATCTGCAGACACAACAC 59.197 52.381 20.97 4.36 0.00 3.32
1596 1635 2.175878 ACAGGATCTGCAGACACAAC 57.824 50.000 20.97 7.67 34.37 3.32
1620 1663 5.541845 CTCAGGTTGACAAGATACAAGACA 58.458 41.667 0.00 0.00 0.00 3.41
1683 1726 6.365050 GTGAAAAATGTCATCAATTTGCACC 58.635 36.000 7.83 0.00 42.63 5.01
1698 1742 3.859386 GCTGCGGAATTAGGTGAAAAATG 59.141 43.478 0.00 0.00 0.00 2.32
1699 1743 3.509575 TGCTGCGGAATTAGGTGAAAAAT 59.490 39.130 0.00 0.00 0.00 1.82
1700 1744 2.887783 TGCTGCGGAATTAGGTGAAAAA 59.112 40.909 0.00 0.00 0.00 1.94
1701 1745 2.509569 TGCTGCGGAATTAGGTGAAAA 58.490 42.857 0.00 0.00 0.00 2.29
1715 1759 4.556135 CAGAATTGTGAAACTAATGCTGCG 59.444 41.667 0.00 0.00 35.63 5.18
1718 1762 7.516198 AGTTCAGAATTGTGAAACTAATGCT 57.484 32.000 18.63 7.85 38.17 3.79
1719 1763 9.677567 TTAAGTTCAGAATTGTGAAACTAATGC 57.322 29.630 18.63 5.80 38.17 3.56
1748 1792 8.062065 TCCTCATTGAACTAAACAAACAAGTT 57.938 30.769 0.00 0.00 36.20 2.66
1752 1796 9.349713 AGTTATCCTCATTGAACTAAACAAACA 57.650 29.630 0.00 0.00 30.45 2.83
1852 1984 2.046314 AATGGAAGCCCGGTCGTG 60.046 61.111 0.00 0.00 34.29 4.35
1903 2035 1.366319 ACAGGGAGGCATCAGAAACT 58.634 50.000 0.00 0.00 0.00 2.66
2026 2158 1.945387 CATGGAGCAACGTCATAGCT 58.055 50.000 4.71 4.71 42.17 3.32
2180 2395 3.132925 GCAAAAGGTGTGTACTAACGGA 58.867 45.455 0.00 0.00 0.00 4.69
2193 2408 6.160576 TGCAATTAAAAGAGAGCAAAAGGT 57.839 33.333 0.00 0.00 0.00 3.50
2369 2584 6.064060 CCTTTGATACTCATGGCCTTTATCA 58.936 40.000 3.32 5.88 0.00 2.15
2587 2858 5.182001 GGCAGATGTCAGTACAACTTGAAAT 59.818 40.000 0.00 0.00 36.67 2.17
2629 2902 6.015434 ACTGTCCAAATGAGGGTGAATTTAAC 60.015 38.462 0.00 0.00 0.00 2.01
2631 2904 5.640147 ACTGTCCAAATGAGGGTGAATTTA 58.360 37.500 0.00 0.00 0.00 1.40
2665 2938 7.589395 TGAACTCGCATTTAGCAGAAAATTAA 58.411 30.769 0.00 0.00 46.13 1.40
2686 2959 7.721286 ATACTAGAACTGCTGCATAATGAAC 57.279 36.000 1.31 0.00 0.00 3.18
2695 2968 8.300286 TCAATACTCATATACTAGAACTGCTGC 58.700 37.037 0.00 0.00 0.00 5.25
2786 3059 5.207768 CAGCACTACAACAAGTTCATGTTC 58.792 41.667 0.00 0.00 41.44 3.18
2836 3109 3.073650 ACTTCTTATCCATCTGGCCATCC 59.926 47.826 5.51 0.00 34.44 3.51
2861 3134 6.927416 TGCAAAGCATTAGAGACAAAATGAT 58.073 32.000 0.00 0.00 35.53 2.45
3062 3336 7.584108 TGCAATAATAAATCTATGAAGCCACG 58.416 34.615 0.00 0.00 0.00 4.94
3257 3538 7.934120 ACAACTGATTAGACCCAATATAAGAGC 59.066 37.037 0.00 0.00 0.00 4.09
3258 3539 9.838339 AACAACTGATTAGACCCAATATAAGAG 57.162 33.333 0.00 0.00 0.00 2.85
3320 3601 9.405587 CTTTTGCCTCTGTTTCGAAAATAATAA 57.594 29.630 13.10 0.17 0.00 1.40
3321 3602 8.788806 TCTTTTGCCTCTGTTTCGAAAATAATA 58.211 29.630 13.10 0.00 0.00 0.98
3322 3603 7.657336 TCTTTTGCCTCTGTTTCGAAAATAAT 58.343 30.769 13.10 0.00 0.00 1.28
3323 3604 7.033530 TCTTTTGCCTCTGTTTCGAAAATAA 57.966 32.000 13.10 0.56 0.00 1.40
3324 3605 6.627395 TCTTTTGCCTCTGTTTCGAAAATA 57.373 33.333 13.10 4.06 0.00 1.40
3325 3606 5.514274 TCTTTTGCCTCTGTTTCGAAAAT 57.486 34.783 13.10 0.00 0.00 1.82
3326 3607 4.974368 TCTTTTGCCTCTGTTTCGAAAA 57.026 36.364 13.10 2.56 0.00 2.29
3327 3608 5.514274 AATCTTTTGCCTCTGTTTCGAAA 57.486 34.783 6.47 6.47 0.00 3.46
3328 3609 5.280945 CAAATCTTTTGCCTCTGTTTCGAA 58.719 37.500 0.00 0.00 0.00 3.71
3329 3610 4.792704 GCAAATCTTTTGCCTCTGTTTCGA 60.793 41.667 12.74 0.00 39.38 3.71
3330 3611 3.426525 GCAAATCTTTTGCCTCTGTTTCG 59.573 43.478 12.74 0.00 39.38 3.46
3331 3612 4.979564 GCAAATCTTTTGCCTCTGTTTC 57.020 40.909 12.74 0.00 39.38 2.78
3340 3621 3.492421 TCGATGAGGCAAATCTTTTGC 57.508 42.857 14.88 14.88 44.22 3.68
3341 3622 8.638685 AATTAATCGATGAGGCAAATCTTTTG 57.361 30.769 0.00 0.00 0.00 2.44
3343 3624 9.956720 CTTAATTAATCGATGAGGCAAATCTTT 57.043 29.630 0.00 0.00 0.00 2.52
3344 3625 9.342308 TCTTAATTAATCGATGAGGCAAATCTT 57.658 29.630 0.00 0.00 0.00 2.40
3345 3626 8.908786 TCTTAATTAATCGATGAGGCAAATCT 57.091 30.769 0.00 0.00 0.00 2.40
3346 3627 9.604626 CTTCTTAATTAATCGATGAGGCAAATC 57.395 33.333 0.00 0.00 0.00 2.17
3347 3628 9.342308 TCTTCTTAATTAATCGATGAGGCAAAT 57.658 29.630 0.00 0.00 0.00 2.32
3348 3629 8.731275 TCTTCTTAATTAATCGATGAGGCAAA 57.269 30.769 0.00 0.00 0.00 3.68
3349 3630 8.204160 TCTCTTCTTAATTAATCGATGAGGCAA 58.796 33.333 19.49 7.59 32.01 4.52
3350 3631 7.726216 TCTCTTCTTAATTAATCGATGAGGCA 58.274 34.615 19.49 8.03 32.01 4.75
3351 3632 8.594881 TTCTCTTCTTAATTAATCGATGAGGC 57.405 34.615 19.49 0.00 32.01 4.70
3355 3636 9.604626 GGCAATTCTCTTCTTAATTAATCGATG 57.395 33.333 0.00 0.00 0.00 3.84
3356 3637 8.787852 GGGCAATTCTCTTCTTAATTAATCGAT 58.212 33.333 0.00 0.00 0.00 3.59
3357 3638 7.773224 TGGGCAATTCTCTTCTTAATTAATCGA 59.227 33.333 0.00 0.00 0.00 3.59
3358 3639 7.930217 TGGGCAATTCTCTTCTTAATTAATCG 58.070 34.615 0.00 0.00 0.00 3.34
3359 3640 8.907885 ACTGGGCAATTCTCTTCTTAATTAATC 58.092 33.333 0.00 0.00 0.00 1.75
3360 3641 8.829373 ACTGGGCAATTCTCTTCTTAATTAAT 57.171 30.769 0.00 0.00 0.00 1.40
3361 3642 8.650143 AACTGGGCAATTCTCTTCTTAATTAA 57.350 30.769 0.00 0.00 0.00 1.40
3362 3643 9.747898 TTAACTGGGCAATTCTCTTCTTAATTA 57.252 29.630 0.00 0.00 0.00 1.40
3363 3644 8.650143 TTAACTGGGCAATTCTCTTCTTAATT 57.350 30.769 0.00 0.00 0.00 1.40
3364 3645 8.829373 ATTAACTGGGCAATTCTCTTCTTAAT 57.171 30.769 0.00 0.00 0.00 1.40
3365 3646 8.650143 AATTAACTGGGCAATTCTCTTCTTAA 57.350 30.769 0.00 0.00 0.00 1.85
3366 3647 9.747898 TTAATTAACTGGGCAATTCTCTTCTTA 57.252 29.630 0.00 0.00 0.00 2.10
3367 3648 8.650143 TTAATTAACTGGGCAATTCTCTTCTT 57.350 30.769 0.00 0.00 0.00 2.52
3368 3649 8.689972 CATTAATTAACTGGGCAATTCTCTTCT 58.310 33.333 0.00 0.00 0.00 2.85
3369 3650 7.922811 CCATTAATTAACTGGGCAATTCTCTTC 59.077 37.037 14.24 0.00 0.00 2.87
3370 3651 7.619302 TCCATTAATTAACTGGGCAATTCTCTT 59.381 33.333 18.59 0.00 0.00 2.85
3371 3652 7.125391 TCCATTAATTAACTGGGCAATTCTCT 58.875 34.615 18.59 0.00 0.00 3.10
3372 3653 7.346751 TCCATTAATTAACTGGGCAATTCTC 57.653 36.000 18.59 0.00 0.00 2.87
3373 3654 7.732222 TTCCATTAATTAACTGGGCAATTCT 57.268 32.000 18.59 0.00 0.00 2.40
3374 3655 8.664798 GTTTTCCATTAATTAACTGGGCAATTC 58.335 33.333 18.59 6.12 0.00 2.17
3375 3656 7.609918 GGTTTTCCATTAATTAACTGGGCAATT 59.390 33.333 18.59 0.00 40.31 2.32
3376 3657 7.109501 GGTTTTCCATTAATTAACTGGGCAAT 58.890 34.615 18.59 0.00 40.31 3.56
3377 3658 6.468543 GGTTTTCCATTAATTAACTGGGCAA 58.531 36.000 18.59 8.92 40.31 4.52
3378 3659 5.336849 CGGTTTTCCATTAATTAACTGGGCA 60.337 40.000 18.59 4.58 40.70 5.36
3379 3660 5.106442 CGGTTTTCCATTAATTAACTGGGC 58.894 41.667 18.59 11.09 40.70 5.36
3380 3661 5.656480 CCGGTTTTCCATTAATTAACTGGG 58.344 41.667 18.59 13.10 40.14 4.45
3381 3662 5.656480 CCCGGTTTTCCATTAATTAACTGG 58.344 41.667 15.23 15.23 42.33 4.00
3382 3663 5.106442 GCCCGGTTTTCCATTAATTAACTG 58.894 41.667 0.00 1.04 40.70 3.16
3383 3664 4.142337 CGCCCGGTTTTCCATTAATTAACT 60.142 41.667 0.00 0.00 40.70 2.24
3384 3665 4.106909 CGCCCGGTTTTCCATTAATTAAC 58.893 43.478 0.00 0.00 40.70 2.01
3385 3666 4.015084 TCGCCCGGTTTTCCATTAATTAA 58.985 39.130 0.00 0.00 40.70 1.40
3386 3667 3.618351 TCGCCCGGTTTTCCATTAATTA 58.382 40.909 0.00 0.00 40.70 1.40
3387 3668 2.448453 TCGCCCGGTTTTCCATTAATT 58.552 42.857 0.00 0.00 40.70 1.40
3388 3669 2.131776 TCGCCCGGTTTTCCATTAAT 57.868 45.000 0.00 0.00 40.70 1.40
3389 3670 1.906990 TTCGCCCGGTTTTCCATTAA 58.093 45.000 0.00 0.00 40.70 1.40
3390 3671 1.906990 TTTCGCCCGGTTTTCCATTA 58.093 45.000 0.00 0.00 40.70 1.90
3391 3672 1.041437 TTTTCGCCCGGTTTTCCATT 58.959 45.000 0.00 0.00 40.70 3.16
3392 3673 0.315886 GTTTTCGCCCGGTTTTCCAT 59.684 50.000 0.00 0.00 40.70 3.41
3393 3674 1.734748 GTTTTCGCCCGGTTTTCCA 59.265 52.632 0.00 0.00 40.70 3.53
3394 3675 1.007038 GGTTTTCGCCCGGTTTTCC 60.007 57.895 0.00 0.00 0.00 3.13
3395 3676 1.370778 CGGTTTTCGCCCGGTTTTC 60.371 57.895 0.00 0.00 41.78 2.29
3396 3677 1.788067 CTCGGTTTTCGCCCGGTTTT 61.788 55.000 0.00 0.00 45.51 2.43
3397 3678 2.203181 TCGGTTTTCGCCCGGTTT 60.203 55.556 0.00 0.00 45.51 3.27
3398 3679 2.667199 CTCGGTTTTCGCCCGGTT 60.667 61.111 0.00 0.00 45.51 4.44
3401 3682 1.157870 ATATGCTCGGTTTTCGCCCG 61.158 55.000 0.00 0.00 46.83 6.13
3402 3683 0.307760 CATATGCTCGGTTTTCGCCC 59.692 55.000 0.00 0.00 39.05 6.13
3403 3684 0.317020 GCATATGCTCGGTTTTCGCC 60.317 55.000 20.64 0.00 39.05 5.54
3404 3685 0.376852 TGCATATGCTCGGTTTTCGC 59.623 50.000 27.13 0.00 42.66 4.70
3405 3686 2.823196 TTGCATATGCTCGGTTTTCG 57.177 45.000 27.13 0.00 42.66 3.46
3406 3687 4.923281 ACTTTTTGCATATGCTCGGTTTTC 59.077 37.500 27.13 0.00 42.66 2.29
3407 3688 4.881920 ACTTTTTGCATATGCTCGGTTTT 58.118 34.783 27.13 4.98 42.66 2.43
3408 3689 4.519540 ACTTTTTGCATATGCTCGGTTT 57.480 36.364 27.13 6.43 42.66 3.27
3409 3690 4.022416 TGAACTTTTTGCATATGCTCGGTT 60.022 37.500 27.13 21.40 42.66 4.44
3410 3691 3.505680 TGAACTTTTTGCATATGCTCGGT 59.494 39.130 27.13 15.45 42.66 4.69
3411 3692 3.853671 GTGAACTTTTTGCATATGCTCGG 59.146 43.478 27.13 14.89 42.66 4.63
3412 3693 3.853671 GGTGAACTTTTTGCATATGCTCG 59.146 43.478 27.13 13.32 42.66 5.03
3413 3694 4.808558 TGGTGAACTTTTTGCATATGCTC 58.191 39.130 27.13 15.20 42.66 4.26
3414 3695 4.870123 TGGTGAACTTTTTGCATATGCT 57.130 36.364 27.13 6.15 42.66 3.79
3415 3696 5.232838 GCTATGGTGAACTTTTTGCATATGC 59.767 40.000 21.09 21.09 42.50 3.14
3416 3697 6.474427 CAGCTATGGTGAACTTTTTGCATATG 59.526 38.462 0.00 0.00 32.22 1.78
3417 3698 6.153340 ACAGCTATGGTGAACTTTTTGCATAT 59.847 34.615 3.70 0.00 34.87 1.78
3418 3699 5.476599 ACAGCTATGGTGAACTTTTTGCATA 59.523 36.000 3.70 0.00 34.87 3.14
3419 3700 4.281688 ACAGCTATGGTGAACTTTTTGCAT 59.718 37.500 3.70 0.00 34.87 3.96
3420 3701 3.636300 ACAGCTATGGTGAACTTTTTGCA 59.364 39.130 3.70 0.00 34.87 4.08
3421 3702 4.243007 ACAGCTATGGTGAACTTTTTGC 57.757 40.909 3.70 0.00 34.87 3.68
3422 3703 6.016777 AGAGAACAGCTATGGTGAACTTTTTG 60.017 38.462 3.70 0.00 34.87 2.44
3423 3704 6.064717 AGAGAACAGCTATGGTGAACTTTTT 58.935 36.000 3.70 0.00 34.87 1.94
3424 3705 5.625150 AGAGAACAGCTATGGTGAACTTTT 58.375 37.500 3.70 0.00 34.87 2.27
3425 3706 5.234466 AGAGAACAGCTATGGTGAACTTT 57.766 39.130 3.70 0.00 34.87 2.66
3426 3707 4.899352 AGAGAACAGCTATGGTGAACTT 57.101 40.909 3.70 0.00 34.87 2.66
3427 3708 6.014156 AGTTTAGAGAACAGCTATGGTGAACT 60.014 38.462 3.70 2.75 34.87 3.01
3428 3709 6.091441 CAGTTTAGAGAACAGCTATGGTGAAC 59.909 42.308 3.70 0.00 34.87 3.18
3439 3720 7.360438 GCAAGAACCATACAGTTTAGAGAACAG 60.360 40.741 0.00 0.00 0.00 3.16
3464 3745 7.278868 ACAAGTGCAAGAATAGTAAGTATCAGC 59.721 37.037 0.00 0.00 0.00 4.26
3642 3926 6.316640 TCACGTAAAAGAACAGTTCCAAATGA 59.683 34.615 9.85 2.97 0.00 2.57
3704 3988 5.659440 AGTTTCCAACAAACATCACAGTT 57.341 34.783 0.40 0.00 32.81 3.16
3923 4207 1.000955 ACGAGTCTGTTGCCTTACCTG 59.999 52.381 0.00 0.00 0.00 4.00
3937 4221 5.383130 GTGGAAAAGCAATTTAGACGAGTC 58.617 41.667 0.00 0.00 0.00 3.36
3946 4230 5.927819 TGATTTGAGGTGGAAAAGCAATTT 58.072 33.333 0.00 0.00 29.42 1.82
3950 4234 3.318839 CACTGATTTGAGGTGGAAAAGCA 59.681 43.478 0.00 0.00 31.46 3.91
3952 4236 4.794003 GCACACTGATTTGAGGTGGAAAAG 60.794 45.833 0.00 0.00 35.53 2.27
3971 4255 1.202475 TCAAACAGTCACTAGCGCACA 60.202 47.619 11.47 0.00 0.00 4.57
3976 4260 5.909610 GTGATTTGTTCAAACAGTCACTAGC 59.090 40.000 22.67 8.36 44.28 3.42
3977 4261 6.430451 GGTGATTTGTTCAAACAGTCACTAG 58.570 40.000 25.62 0.00 45.47 2.57
3982 4266 4.647424 TGGGTGATTTGTTCAAACAGTC 57.353 40.909 0.00 0.65 40.50 3.51
3987 4271 3.963374 TGACCATGGGTGATTTGTTCAAA 59.037 39.130 18.09 0.44 35.25 2.69
4001 4285 3.569701 GCACCCTATAAACATGACCATGG 59.430 47.826 11.19 11.19 42.91 3.66
4019 4303 1.446907 CCTCACAGAACAGATGCACC 58.553 55.000 0.00 0.00 0.00 5.01
4024 4308 1.002888 CTGGTGCCTCACAGAACAGAT 59.997 52.381 0.00 0.00 35.86 2.90
4032 4316 0.111061 AAAGATGCTGGTGCCTCACA 59.889 50.000 0.00 0.00 36.49 3.58
4078 4363 3.185188 CAGCTACCGCACATGATTATGAC 59.815 47.826 4.20 0.00 37.73 3.06
4132 4425 6.575201 CAGCGAACAAAAGAACTTCTATTGAC 59.425 38.462 0.00 0.00 0.00 3.18
4133 4426 6.260050 ACAGCGAACAAAAGAACTTCTATTGA 59.740 34.615 0.00 0.00 0.00 2.57
4134 4427 6.430451 ACAGCGAACAAAAGAACTTCTATTG 58.570 36.000 0.00 0.00 0.00 1.90
4314 4609 2.987149 CGCGAACAACAGAAGTAGTGAT 59.013 45.455 0.00 0.00 0.00 3.06
4342 4637 2.103094 TCCATAGGCCGAACAAGATGAG 59.897 50.000 0.00 0.00 0.00 2.90
4401 4696 2.348666 CGATTCTTTACTGTCCGCCTTG 59.651 50.000 0.00 0.00 0.00 3.61
4514 4815 9.220767 AGTACATGGTTTCAGATTTAGAGAAAC 57.779 33.333 8.34 8.34 46.29 2.78
4515 4816 9.436957 GAGTACATGGTTTCAGATTTAGAGAAA 57.563 33.333 0.00 0.00 0.00 2.52
4533 4834 2.311463 AGATGTCCCTCCGAGTACATG 58.689 52.381 15.02 0.00 32.87 3.21
4555 4919 7.604549 ACAAATGTTGCATCTTTGATATGACA 58.395 30.769 17.81 3.16 34.69 3.58
4556 4920 9.571810 TTACAAATGTTGCATCTTTGATATGAC 57.428 29.630 17.81 0.00 34.69 3.06
4557 4921 9.571810 GTTACAAATGTTGCATCTTTGATATGA 57.428 29.630 17.81 0.00 34.69 2.15
4558 4922 8.810427 GGTTACAAATGTTGCATCTTTGATATG 58.190 33.333 17.81 7.02 34.69 1.78
4559 4923 8.752187 AGGTTACAAATGTTGCATCTTTGATAT 58.248 29.630 17.81 4.18 34.69 1.63
4560 4924 8.028354 CAGGTTACAAATGTTGCATCTTTGATA 58.972 33.333 17.81 7.94 34.69 2.15
4561 4925 6.869913 CAGGTTACAAATGTTGCATCTTTGAT 59.130 34.615 17.81 8.62 34.69 2.57
4562 4926 6.183360 ACAGGTTACAAATGTTGCATCTTTGA 60.183 34.615 17.81 4.66 34.69 2.69
4611 4975 7.113658 AGGAAGATGATACAACGTCATAGTT 57.886 36.000 0.00 0.00 36.49 2.24
4612 4976 6.716934 AGGAAGATGATACAACGTCATAGT 57.283 37.500 0.00 0.00 36.49 2.12
4613 4977 6.980978 ACAAGGAAGATGATACAACGTCATAG 59.019 38.462 0.00 0.00 36.49 2.23
4627 4999 3.055530 AGTGGCTAGACACAAGGAAGATG 60.056 47.826 30.11 0.00 43.72 2.90
4650 5022 2.093890 TCAAGGAGACCGTATAACGCA 58.906 47.619 0.00 0.00 40.91 5.24
4651 5023 2.457970 GTCAAGGAGACCGTATAACGC 58.542 52.381 0.00 0.00 40.91 4.84
4732 5108 4.637483 TGAACTGCTTTTGTCTGGAAAG 57.363 40.909 0.00 0.00 37.21 2.62
4762 5138 4.842531 TCTGCCTTATGAAGATGTTGGA 57.157 40.909 0.00 0.00 0.00 3.53
4785 5161 6.688813 GCAGCTTTATGTTACTATGTTCAAGC 59.311 38.462 0.00 0.00 35.41 4.01
4787 5163 6.657117 TGGCAGCTTTATGTTACTATGTTCAA 59.343 34.615 0.00 0.00 0.00 2.69
4792 5168 5.563475 GCCATGGCAGCTTTATGTTACTATG 60.563 44.000 32.08 0.00 41.49 2.23
4794 5170 3.882888 GCCATGGCAGCTTTATGTTACTA 59.117 43.478 32.08 0.00 41.49 1.82
4823 5199 4.173036 TCAAAATTCAGATTCGGGCAAC 57.827 40.909 0.00 0.00 0.00 4.17
4854 5231 7.451731 AAGGGAACTCCAGATACATTTCATA 57.548 36.000 0.00 0.00 42.68 2.15
4869 5248 2.278332 AGCAGGTCAAAAGGGAACTC 57.722 50.000 0.00 0.00 42.68 3.01
4872 5251 1.039856 GCAAGCAGGTCAAAAGGGAA 58.960 50.000 0.00 0.00 0.00 3.97
4917 5304 3.295973 AGACAAGCAGGTTGCCTAAAAA 58.704 40.909 12.41 0.00 46.52 1.94
4918 5305 2.944129 AGACAAGCAGGTTGCCTAAAA 58.056 42.857 12.41 0.00 46.52 1.52
4919 5306 2.656947 AGACAAGCAGGTTGCCTAAA 57.343 45.000 12.41 0.00 46.52 1.85
4920 5307 2.106511 AGAAGACAAGCAGGTTGCCTAA 59.893 45.455 12.41 0.00 46.52 2.69
4922 5309 0.475906 AGAAGACAAGCAGGTTGCCT 59.524 50.000 12.41 3.56 46.52 4.75
4923 5310 1.268079 GAAGAAGACAAGCAGGTTGCC 59.732 52.381 12.41 0.83 46.52 4.52
4924 5311 1.949525 TGAAGAAGACAAGCAGGTTGC 59.050 47.619 12.41 5.57 45.46 4.17
4925 5312 3.057736 CCATGAAGAAGACAAGCAGGTTG 60.058 47.826 10.92 10.92 42.48 3.77
4927 5314 2.373169 TCCATGAAGAAGACAAGCAGGT 59.627 45.455 0.00 0.00 0.00 4.00
4928 5315 2.746362 GTCCATGAAGAAGACAAGCAGG 59.254 50.000 0.00 0.00 0.00 4.85
4929 5316 3.436015 CAGTCCATGAAGAAGACAAGCAG 59.564 47.826 0.00 0.00 32.82 4.24
4930 5317 3.181451 ACAGTCCATGAAGAAGACAAGCA 60.181 43.478 0.00 0.00 32.82 3.91
4951 5411 1.008538 CAAAGGCCTTGTGCGACAC 60.009 57.895 21.33 3.44 42.61 3.67
4971 5431 1.404047 CCTTGTGGGCCGCTAAATTTG 60.404 52.381 19.39 0.00 0.00 2.32
5037 5504 2.203437 GTTTTGGTCGGGGGCTGT 60.203 61.111 0.00 0.00 0.00 4.40
5038 5505 2.989253 GGTTTTGGTCGGGGGCTG 60.989 66.667 0.00 0.00 0.00 4.85
5039 5506 3.182996 AGGTTTTGGTCGGGGGCT 61.183 61.111 0.00 0.00 0.00 5.19
5040 5507 2.675423 GAGGTTTTGGTCGGGGGC 60.675 66.667 0.00 0.00 0.00 5.80
5042 5509 3.053896 GCGAGGTTTTGGTCGGGG 61.054 66.667 0.00 0.00 36.67 5.73
5043 5510 2.032071 AGCGAGGTTTTGGTCGGG 59.968 61.111 0.00 0.00 36.67 5.14
5044 5511 3.562635 GAGCGAGGTTTTGGTCGG 58.437 61.111 0.00 0.00 36.67 4.79
5116 5595 3.479269 CCGACTTCCGCGCTTCAC 61.479 66.667 5.56 0.00 36.84 3.18
5117 5596 3.215597 TTCCGACTTCCGCGCTTCA 62.216 57.895 5.56 0.00 36.84 3.02
5185 5664 4.324991 AACCGAACCTGGTCGCCC 62.325 66.667 0.00 0.00 42.89 6.13
5199 5678 2.777459 TAGGGAGGAGATGGAGAACC 57.223 55.000 0.00 0.00 0.00 3.62
5212 5691 3.056465 GCTCCATACGGAAGATTAGGGAG 60.056 52.174 5.20 5.20 42.21 4.30
5215 5694 3.366476 CGAGCTCCATACGGAAGATTAGG 60.366 52.174 8.47 0.00 42.21 2.69
5220 5699 1.035385 TGCGAGCTCCATACGGAAGA 61.035 55.000 8.47 0.00 42.21 2.87
5221 5700 0.872021 GTGCGAGCTCCATACGGAAG 60.872 60.000 8.47 0.00 42.21 3.46
5222 5701 1.141019 GTGCGAGCTCCATACGGAA 59.859 57.895 8.47 0.00 42.21 4.30
5250 5729 2.398498 CTAAGTGCCTATGCTAGCGTG 58.602 52.381 19.93 9.24 38.71 5.34
5285 5764 4.096003 GCCCTCTGTAAGCCGGCA 62.096 66.667 31.54 5.56 44.38 5.69
5286 5765 4.858680 GGCCCTCTGTAAGCCGGC 62.859 72.222 21.89 21.89 44.29 6.13
5304 5783 4.332543 TCCTCTGCCCTCCCCGTT 62.333 66.667 0.00 0.00 0.00 4.44
5307 5786 1.458588 CTACTCCTCTGCCCTCCCC 60.459 68.421 0.00 0.00 0.00 4.81
5313 5792 5.524281 GCAAAAATAGTACTACTCCTCTGCC 59.476 44.000 4.31 0.00 0.00 4.85
5331 5810 8.508875 GCTGGTACTAGTTAGTAATTGCAAAAA 58.491 33.333 1.71 0.00 40.20 1.94
5332 5811 7.881232 AGCTGGTACTAGTTAGTAATTGCAAAA 59.119 33.333 1.71 0.00 40.20 2.44
5333 5812 7.333423 CAGCTGGTACTAGTTAGTAATTGCAAA 59.667 37.037 5.57 0.00 40.20 3.68
5334 5813 6.816640 CAGCTGGTACTAGTTAGTAATTGCAA 59.183 38.462 5.57 0.00 40.20 4.08
5335 5814 6.338146 CAGCTGGTACTAGTTAGTAATTGCA 58.662 40.000 5.57 0.00 40.20 4.08
5336 5815 5.234543 GCAGCTGGTACTAGTTAGTAATTGC 59.765 44.000 17.12 0.52 40.20 3.56
5337 5816 6.477033 CAGCAGCTGGTACTAGTTAGTAATTG 59.523 42.308 19.71 0.00 40.20 2.32
5338 5817 6.574350 CAGCAGCTGGTACTAGTTAGTAATT 58.426 40.000 19.71 0.00 40.20 1.40
5339 5818 5.452077 GCAGCAGCTGGTACTAGTTAGTAAT 60.452 44.000 24.13 0.00 37.90 1.89
5340 5819 4.142227 GCAGCAGCTGGTACTAGTTAGTAA 60.142 45.833 24.13 0.00 37.90 2.24
5341 5820 3.380637 GCAGCAGCTGGTACTAGTTAGTA 59.619 47.826 24.13 0.00 36.39 1.82
5342 5821 2.166664 GCAGCAGCTGGTACTAGTTAGT 59.833 50.000 24.13 0.00 37.81 2.24
5343 5822 2.815478 GCAGCAGCTGGTACTAGTTAG 58.185 52.381 24.13 4.61 37.91 2.34
5344 5823 2.961526 GCAGCAGCTGGTACTAGTTA 57.038 50.000 24.13 0.00 37.91 2.24
5345 5824 3.842869 GCAGCAGCTGGTACTAGTT 57.157 52.632 24.13 0.00 37.91 2.24
5356 5835 2.598394 TCCAACCCAAGCAGCAGC 60.598 61.111 0.00 0.00 42.56 5.25
5357 5836 2.633509 GCTCCAACCCAAGCAGCAG 61.634 63.158 0.00 0.00 38.42 4.24
5358 5837 2.598394 GCTCCAACCCAAGCAGCA 60.598 61.111 0.00 0.00 38.42 4.41
5359 5838 3.376918 GGCTCCAACCCAAGCAGC 61.377 66.667 0.00 0.00 40.36 5.25
5360 5839 1.531365 TTGGCTCCAACCCAAGCAG 60.531 57.895 0.00 0.00 40.36 4.24
5361 5840 2.605873 TTGGCTCCAACCCAAGCA 59.394 55.556 0.00 0.00 40.36 3.91
5364 5843 2.203625 GGCTTGGCTCCAACCCAA 60.204 61.111 7.88 0.00 39.91 4.12
5365 5844 4.299796 GGGCTTGGCTCCAACCCA 62.300 66.667 22.95 0.00 41.99 4.51
5366 5845 4.299796 TGGGCTTGGCTCCAACCC 62.300 66.667 21.94 21.94 42.36 4.11
5367 5846 2.991540 GTGGGCTTGGCTCCAACC 60.992 66.667 0.00 4.79 32.52 3.77
5368 5847 2.991540 GGTGGGCTTGGCTCCAAC 60.992 66.667 0.00 0.00 32.52 3.77
5369 5848 3.185203 AGGTGGGCTTGGCTCCAA 61.185 61.111 0.95 0.95 32.52 3.53
5370 5849 2.763988 TAGAGGTGGGCTTGGCTCCA 62.764 60.000 10.06 0.00 0.00 3.86
5371 5850 1.348775 ATAGAGGTGGGCTTGGCTCC 61.349 60.000 0.00 0.00 0.00 4.70
5372 5851 1.346068 CTATAGAGGTGGGCTTGGCTC 59.654 57.143 0.00 0.00 0.00 4.70
5373 5852 1.428869 CTATAGAGGTGGGCTTGGCT 58.571 55.000 0.00 0.00 0.00 4.75
5374 5853 0.398318 CCTATAGAGGTGGGCTTGGC 59.602 60.000 0.00 0.00 38.16 4.52
5375 5854 0.398318 GCCTATAGAGGTGGGCTTGG 59.602 60.000 5.08 0.00 45.78 3.61
5379 5858 2.973406 ACTAAAGCCTATAGAGGTGGGC 59.027 50.000 5.08 0.00 45.78 5.36
5380 5859 3.244249 GCACTAAAGCCTATAGAGGTGGG 60.244 52.174 5.08 0.00 45.78 4.61
5381 5860 3.388024 TGCACTAAAGCCTATAGAGGTGG 59.612 47.826 5.08 0.00 45.78 4.61
5382 5861 4.342378 TCTGCACTAAAGCCTATAGAGGTG 59.658 45.833 5.08 0.00 45.78 4.00
5383 5862 4.547671 TCTGCACTAAAGCCTATAGAGGT 58.452 43.478 5.08 0.00 45.78 3.85
5384 5863 4.021544 CCTCTGCACTAAAGCCTATAGAGG 60.022 50.000 0.00 0.00 46.93 3.69
5385 5864 4.021544 CCCTCTGCACTAAAGCCTATAGAG 60.022 50.000 0.00 0.00 33.28 2.43
5386 5865 3.898123 CCCTCTGCACTAAAGCCTATAGA 59.102 47.826 0.00 0.00 0.00 1.98
5387 5866 3.898123 TCCCTCTGCACTAAAGCCTATAG 59.102 47.826 0.00 0.00 0.00 1.31
5388 5867 3.923648 TCCCTCTGCACTAAAGCCTATA 58.076 45.455 0.00 0.00 0.00 1.31
5389 5868 2.764269 TCCCTCTGCACTAAAGCCTAT 58.236 47.619 0.00 0.00 0.00 2.57
5390 5869 2.247699 TCCCTCTGCACTAAAGCCTA 57.752 50.000 0.00 0.00 0.00 3.93
5391 5870 1.362224 TTCCCTCTGCACTAAAGCCT 58.638 50.000 0.00 0.00 0.00 4.58
5392 5871 2.200373 TTTCCCTCTGCACTAAAGCC 57.800 50.000 0.00 0.00 0.00 4.35
5393 5872 3.376546 CAGATTTCCCTCTGCACTAAAGC 59.623 47.826 0.00 0.00 36.53 3.51
5394 5873 4.836825 TCAGATTTCCCTCTGCACTAAAG 58.163 43.478 0.00 0.00 42.00 1.85
5395 5874 4.532126 TCTCAGATTTCCCTCTGCACTAAA 59.468 41.667 0.00 0.00 42.00 1.85
5396 5875 4.096681 TCTCAGATTTCCCTCTGCACTAA 58.903 43.478 0.00 0.00 42.00 2.24
5397 5876 3.713003 TCTCAGATTTCCCTCTGCACTA 58.287 45.455 0.00 0.00 42.00 2.74
5398 5877 2.544721 TCTCAGATTTCCCTCTGCACT 58.455 47.619 0.00 0.00 42.00 4.40
5399 5878 3.269178 CTTCTCAGATTTCCCTCTGCAC 58.731 50.000 0.00 0.00 42.00 4.57
5400 5879 2.355513 GCTTCTCAGATTTCCCTCTGCA 60.356 50.000 0.00 0.00 42.00 4.41
5401 5880 2.287769 GCTTCTCAGATTTCCCTCTGC 58.712 52.381 0.00 0.00 42.00 4.26
5402 5881 2.504996 AGGCTTCTCAGATTTCCCTCTG 59.495 50.000 0.00 0.00 43.33 3.35
5403 5882 2.504996 CAGGCTTCTCAGATTTCCCTCT 59.495 50.000 0.00 0.00 0.00 3.69
5404 5883 2.238395 ACAGGCTTCTCAGATTTCCCTC 59.762 50.000 0.00 0.00 0.00 4.30
5405 5884 2.273619 ACAGGCTTCTCAGATTTCCCT 58.726 47.619 0.00 0.00 0.00 4.20
5406 5885 2.751806 CAACAGGCTTCTCAGATTTCCC 59.248 50.000 0.00 0.00 0.00 3.97
5407 5886 3.416156 ACAACAGGCTTCTCAGATTTCC 58.584 45.455 0.00 0.00 0.00 3.13
5408 5887 3.438434 GGACAACAGGCTTCTCAGATTTC 59.562 47.826 0.00 0.00 0.00 2.17
5409 5888 3.416156 GGACAACAGGCTTCTCAGATTT 58.584 45.455 0.00 0.00 0.00 2.17
5410 5889 2.613977 CGGACAACAGGCTTCTCAGATT 60.614 50.000 0.00 0.00 0.00 2.40
5411 5890 1.066573 CGGACAACAGGCTTCTCAGAT 60.067 52.381 0.00 0.00 0.00 2.90
5412 5891 0.318441 CGGACAACAGGCTTCTCAGA 59.682 55.000 0.00 0.00 0.00 3.27
5413 5892 0.034059 ACGGACAACAGGCTTCTCAG 59.966 55.000 0.00 0.00 0.00 3.35
5414 5893 0.033504 GACGGACAACAGGCTTCTCA 59.966 55.000 0.00 0.00 0.00 3.27
5415 5894 0.670854 GGACGGACAACAGGCTTCTC 60.671 60.000 0.00 0.00 0.00 2.87
5416 5895 1.371558 GGACGGACAACAGGCTTCT 59.628 57.895 0.00 0.00 0.00 2.85
5417 5896 2.027625 CGGACGGACAACAGGCTTC 61.028 63.158 0.00 0.00 0.00 3.86
5418 5897 2.030562 CGGACGGACAACAGGCTT 59.969 61.111 0.00 0.00 0.00 4.35
5419 5898 3.222354 GACGGACGGACAACAGGCT 62.222 63.158 0.00 0.00 0.00 4.58
5420 5899 2.737376 GACGGACGGACAACAGGC 60.737 66.667 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.