Multiple sequence alignment - TraesCS3D01G089700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G089700 chr3D 100.000 2519 0 0 1 2519 45429922 45427404 0.000000e+00 4652.0
1 TraesCS3D01G089700 chr3D 92.035 226 17 1 121 346 559898043 559897819 1.450000e-82 316.0
2 TraesCS3D01G089700 chr3D 81.977 172 31 0 1004 1175 45543215 45543044 2.020000e-31 147.0
3 TraesCS3D01G089700 chr3D 81.609 174 32 0 1001 1174 514851486 514851659 7.260000e-31 145.0
4 TraesCS3D01G089700 chr3D 91.089 101 5 4 336 432 54783417 54783317 1.570000e-27 134.0
5 TraesCS3D01G089700 chr3D 86.607 112 15 0 1006 1117 91387109 91386998 9.460000e-25 124.0
6 TraesCS3D01G089700 chr3B 89.253 1526 97 23 425 1927 71174006 71172525 0.000000e+00 1847.0
7 TraesCS3D01G089700 chr3B 87.966 349 33 7 1 346 71174345 71174003 1.090000e-108 403.0
8 TraesCS3D01G089700 chr3B 84.949 392 44 4 2126 2515 71157806 71157428 1.410000e-102 383.0
9 TraesCS3D01G089700 chr3B 80.453 353 36 10 848 1175 71215981 71215637 3.240000e-59 239.0
10 TraesCS3D01G089700 chr3B 85.465 172 5 15 661 816 71216146 71215979 7.210000e-36 161.0
11 TraesCS3D01G089700 chr3B 82.558 172 30 0 1004 1175 71297552 71297381 4.340000e-33 152.0
12 TraesCS3D01G089700 chr3B 82.184 174 31 0 1001 1174 677289537 677289710 1.560000e-32 150.0
13 TraesCS3D01G089700 chr3A 83.563 1089 93 38 1455 2513 57202806 57201774 0.000000e+00 941.0
14 TraesCS3D01G089700 chr3A 89.286 476 25 15 444 898 57203307 57202837 7.820000e-160 573.0
15 TraesCS3D01G089700 chr3A 86.455 347 36 4 1 344 57203670 57203332 1.100000e-98 370.0
16 TraesCS3D01G089700 chr3A 82.353 170 30 0 1004 1173 19050254 19050085 5.610000e-32 148.0
17 TraesCS3D01G089700 chr3A 88.393 112 13 0 1006 1117 107566686 107566575 4.370000e-28 135.0
18 TraesCS3D01G089700 chr7A 90.833 240 18 3 107 346 149025552 149025787 4.040000e-83 318.0
19 TraesCS3D01G089700 chr7A 88.068 176 11 5 444 609 149025811 149025986 1.530000e-47 200.0
20 TraesCS3D01G089700 chr4A 90.435 230 20 2 117 346 495159882 495159655 4.070000e-78 302.0
21 TraesCS3D01G089700 chr4A 86.982 169 12 5 450 608 495159625 495159457 5.540000e-42 182.0
22 TraesCS3D01G089700 chr5A 88.496 226 24 2 121 346 513436505 513436728 3.190000e-69 272.0
23 TraesCS3D01G089700 chr5A 95.506 89 3 1 341 429 670543091 670543004 9.390000e-30 141.0
24 TraesCS3D01G089700 chr4D 88.106 227 24 3 121 346 6967679 6967903 1.490000e-67 267.0
25 TraesCS3D01G089700 chr4D 86.842 228 27 3 120 346 298115385 298115160 4.160000e-63 252.0
26 TraesCS3D01G089700 chr4D 88.623 167 9 2 451 607 6967932 6968098 7.110000e-46 195.0
27 TraesCS3D01G089700 chr4D 87.574 169 12 5 444 603 298115137 298114969 1.190000e-43 187.0
28 TraesCS3D01G089700 chr4D 92.857 98 3 3 345 440 484149289 484149194 3.380000e-29 139.0
29 TraesCS3D01G089700 chr2D 86.638 232 27 3 119 348 368009208 368008979 1.160000e-63 254.0
30 TraesCS3D01G089700 chr2A 86.458 192 13 7 428 607 655053177 655052987 5.500000e-47 198.0
31 TraesCS3D01G089700 chr7D 88.750 160 14 2 451 606 398041640 398041481 2.560000e-45 193.0
32 TraesCS3D01G089700 chr7D 82.418 182 30 2 1006 1186 549946220 549946040 9.330000e-35 158.0
33 TraesCS3D01G089700 chr7D 89.796 49 5 0 445 493 473111092 473111044 2.090000e-06 63.9
34 TraesCS3D01G089700 chr7B 86.188 181 11 7 444 610 648706938 648706758 1.540000e-42 183.0
35 TraesCS3D01G089700 chr1D 80.269 223 31 10 2305 2515 105160364 105160585 3.360000e-34 156.0
36 TraesCS3D01G089700 chr5D 95.455 88 2 2 345 432 277244592 277244677 3.380000e-29 139.0
37 TraesCS3D01G089700 chr5D 95.402 87 2 2 345 431 277244670 277244586 1.220000e-28 137.0
38 TraesCS3D01G089700 chr1B 94.624 93 0 3 344 431 344374431 344374339 3.380000e-29 139.0
39 TraesCS3D01G089700 chr1B 93.407 91 3 2 345 432 564569724 564569634 5.650000e-27 132.0
40 TraesCS3D01G089700 chr5B 84.783 138 9 10 345 473 331307489 331307355 7.310000e-26 128.0
41 TraesCS3D01G089700 chr4B 83.824 136 13 6 345 473 454519254 454519387 1.220000e-23 121.0
42 TraesCS3D01G089700 chr6B 82.308 130 23 0 1032 1161 151682109 151681980 2.050000e-21 113.0
43 TraesCS3D01G089700 chr6B 92.105 76 6 0 1037 1112 8997157 8997232 9.530000e-20 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G089700 chr3D 45427404 45429922 2518 True 4652 4652 100.000000 1 2519 1 chr3D.!!$R1 2518
1 TraesCS3D01G089700 chr3B 71172525 71174345 1820 True 1125 1847 88.609500 1 1927 2 chr3B.!!$R3 1926
2 TraesCS3D01G089700 chr3A 57201774 57203670 1896 True 628 941 86.434667 1 2513 3 chr3A.!!$R3 2512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
978 1012 0.251077 AGCAAAGAAGGGAGCCACTG 60.251 55.0 0.0 0.0 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2153 2220 0.105039 ATCTGTTCCGCTCGGGATTC 59.895 55.0 8.59 0.0 46.62 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.895530 TTCGGACCTAAGAGGCACAG 59.104 55.000 0.00 0.00 39.63 3.66
101 107 3.760035 GAGAGCGAGGGCCGAACA 61.760 66.667 0.00 0.00 41.76 3.18
112 118 1.525077 GCCGAACACAAGACCCACA 60.525 57.895 0.00 0.00 0.00 4.17
115 121 1.663695 CGAACACAAGACCCACACTT 58.336 50.000 0.00 0.00 0.00 3.16
154 160 0.889186 GTGGACGGGTGCATTGAAGT 60.889 55.000 0.00 0.00 32.40 3.01
253 259 5.123661 TGGATGTATGTTACACATGTGCAAG 59.876 40.000 25.68 2.21 42.23 4.01
262 268 3.719924 ACACATGTGCAAGTTTTGATGG 58.280 40.909 25.68 0.00 0.00 3.51
267 273 2.361757 TGTGCAAGTTTTGATGGTGAGG 59.638 45.455 0.00 0.00 0.00 3.86
310 316 4.031201 CACACAAATGACAAAAACCGTGAC 59.969 41.667 0.00 0.00 0.00 3.67
315 321 4.974368 ATGACAAAAACCGTGACTTTGA 57.026 36.364 2.61 0.00 34.76 2.69
344 350 7.772292 AGATGAACAGTGCATGTATTATTCACT 59.228 33.333 0.00 0.00 43.00 3.41
345 351 8.962884 ATGAACAGTGCATGTATTATTCACTA 57.037 30.769 2.29 0.00 43.00 2.74
346 352 8.196802 TGAACAGTGCATGTATTATTCACTAC 57.803 34.615 0.00 0.00 43.00 2.73
347 353 8.040727 TGAACAGTGCATGTATTATTCACTACT 58.959 33.333 0.00 0.00 43.00 2.57
348 354 8.425577 AACAGTGCATGTATTATTCACTACTC 57.574 34.615 0.00 0.00 43.00 2.59
349 355 6.986817 ACAGTGCATGTATTATTCACTACTCC 59.013 38.462 0.00 0.00 41.60 3.85
350 356 6.425114 CAGTGCATGTATTATTCACTACTCCC 59.575 42.308 0.00 0.00 36.37 4.30
351 357 6.327626 AGTGCATGTATTATTCACTACTCCCT 59.672 38.462 0.00 0.00 36.37 4.20
352 358 6.992715 GTGCATGTATTATTCACTACTCCCTT 59.007 38.462 0.00 0.00 0.00 3.95
353 359 7.499232 GTGCATGTATTATTCACTACTCCCTTT 59.501 37.037 0.00 0.00 0.00 3.11
354 360 7.498900 TGCATGTATTATTCACTACTCCCTTTG 59.501 37.037 0.00 0.00 0.00 2.77
355 361 7.499232 GCATGTATTATTCACTACTCCCTTTGT 59.501 37.037 0.00 0.00 0.00 2.83
371 377 9.833917 ACTCCCTTTGTAAACTAATATAAGAGC 57.166 33.333 0.00 0.00 0.00 4.09
372 378 8.882415 TCCCTTTGTAAACTAATATAAGAGCG 57.118 34.615 0.00 0.00 0.00 5.03
373 379 8.480501 TCCCTTTGTAAACTAATATAAGAGCGT 58.519 33.333 0.00 0.00 0.00 5.07
374 380 9.106070 CCCTTTGTAAACTAATATAAGAGCGTT 57.894 33.333 0.00 0.00 0.00 4.84
388 394 9.847706 ATATAAGAGCGTTTAGATCACATAGTG 57.152 33.333 0.00 0.00 37.82 2.74
389 395 5.836821 AGAGCGTTTAGATCACATAGTGA 57.163 39.130 1.95 1.95 46.90 3.41
401 407 5.836821 TCACATAGTGATCTAAACGCTCT 57.163 39.130 0.00 0.00 37.67 4.09
402 408 6.208988 TCACATAGTGATCTAAACGCTCTT 57.791 37.500 0.00 0.00 37.67 2.85
403 409 7.329588 TCACATAGTGATCTAAACGCTCTTA 57.670 36.000 0.00 0.00 37.67 2.10
404 410 7.941919 TCACATAGTGATCTAAACGCTCTTAT 58.058 34.615 0.00 0.00 37.67 1.73
405 411 9.063615 TCACATAGTGATCTAAACGCTCTTATA 57.936 33.333 0.00 0.00 37.67 0.98
406 412 9.847706 CACATAGTGATCTAAACGCTCTTATAT 57.152 33.333 0.00 0.00 35.23 0.86
419 425 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
420 426 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
421 427 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
422 428 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
423 429 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
438 444 8.840200 ACAGAGGGAGTACTATTTAGAAATGA 57.160 34.615 0.00 0.00 0.00 2.57
510 540 7.641760 TCACACATGTGTAATAATGATCATGC 58.358 34.615 30.11 0.00 45.76 4.06
607 638 4.082026 CCATGTTCCAAAAATCCACTCTCC 60.082 45.833 0.00 0.00 0.00 3.71
609 640 3.117322 TGTTCCAAAAATCCACTCTCCCA 60.117 43.478 0.00 0.00 0.00 4.37
637 669 5.376625 TCTCTCTAGCTTCTCTTCCATCTC 58.623 45.833 0.00 0.00 0.00 2.75
666 698 3.599343 CAGTTAATGCAGCTGTGGTCTA 58.401 45.455 16.64 0.00 31.22 2.59
705 737 3.754965 TCATCTTTCCCAAGTTCCACAG 58.245 45.455 0.00 0.00 0.00 3.66
758 790 3.046968 TGCGCTAATAAACTCACCACA 57.953 42.857 9.73 0.00 0.00 4.17
759 791 2.739913 TGCGCTAATAAACTCACCACAC 59.260 45.455 9.73 0.00 0.00 3.82
836 868 3.808466 TCTGCTTCTCTTCGCATGTAT 57.192 42.857 0.00 0.00 35.32 2.29
837 869 4.918810 TCTGCTTCTCTTCGCATGTATA 57.081 40.909 0.00 0.00 35.32 1.47
838 870 4.611943 TCTGCTTCTCTTCGCATGTATAC 58.388 43.478 0.00 0.00 35.32 1.47
840 872 4.363138 TGCTTCTCTTCGCATGTATACTG 58.637 43.478 4.17 1.57 0.00 2.74
843 875 5.399892 GCTTCTCTTCGCATGTATACTGTAC 59.600 44.000 4.17 0.00 0.00 2.90
844 876 6.694877 TTCTCTTCGCATGTATACTGTACT 57.305 37.500 4.17 0.00 0.00 2.73
977 1011 0.480252 AAGCAAAGAAGGGAGCCACT 59.520 50.000 0.00 0.00 0.00 4.00
978 1012 0.251077 AGCAAAGAAGGGAGCCACTG 60.251 55.000 0.00 0.00 0.00 3.66
979 1013 1.871126 GCAAAGAAGGGAGCCACTGC 61.871 60.000 0.00 0.00 37.95 4.40
980 1014 1.075659 AAAGAAGGGAGCCACTGCC 59.924 57.895 0.00 0.00 42.52 4.85
981 1015 1.719063 AAAGAAGGGAGCCACTGCCA 61.719 55.000 7.92 0.00 44.71 4.92
982 1016 1.719063 AAGAAGGGAGCCACTGCCAA 61.719 55.000 7.92 0.00 44.71 4.52
983 1017 1.228552 GAAGGGAGCCACTGCCAAA 60.229 57.895 7.92 0.00 44.71 3.28
1012 1046 3.264193 TGGCACTCTAATGACCATGAAGT 59.736 43.478 0.00 0.00 0.00 3.01
1015 1049 4.697352 GCACTCTAATGACCATGAAGTTGT 59.303 41.667 0.00 0.00 0.00 3.32
1092 1126 2.384828 GACTTCCTCTTCTCCCTCCTC 58.615 57.143 0.00 0.00 0.00 3.71
1141 1175 2.933287 TCAACCCGGGCTCCATGT 60.933 61.111 24.08 0.00 0.00 3.21
1143 1177 1.606313 CAACCCGGGCTCCATGTTT 60.606 57.895 24.08 0.49 0.00 2.83
1165 1199 4.681978 GCGTCGGCAACCTCCACT 62.682 66.667 0.00 0.00 39.62 4.00
1174 1208 2.932234 AACCTCCACTCCAGCGTCG 61.932 63.158 0.00 0.00 0.00 5.12
1175 1209 4.135153 CCTCCACTCCAGCGTCGG 62.135 72.222 0.00 0.00 0.00 4.79
1176 1210 4.803426 CTCCACTCCAGCGTCGGC 62.803 72.222 0.00 0.00 40.37 5.54
1178 1212 4.680237 CCACTCCAGCGTCGGCAA 62.680 66.667 0.00 0.00 43.41 4.52
1179 1213 3.414700 CACTCCAGCGTCGGCAAC 61.415 66.667 0.00 0.00 43.41 4.17
1180 1214 4.681978 ACTCCAGCGTCGGCAACC 62.682 66.667 0.00 0.00 43.41 3.77
1181 1215 4.379243 CTCCAGCGTCGGCAACCT 62.379 66.667 0.00 0.00 43.41 3.50
1182 1216 4.373116 TCCAGCGTCGGCAACCTC 62.373 66.667 0.00 0.00 43.41 3.85
1184 1218 4.680237 CAGCGTCGGCAACCTCCA 62.680 66.667 0.00 0.00 43.41 3.86
1185 1219 4.681978 AGCGTCGGCAACCTCCAC 62.682 66.667 0.00 0.00 43.41 4.02
1186 1220 4.681978 GCGTCGGCAACCTCCACT 62.682 66.667 0.00 0.00 39.62 4.00
1187 1221 2.432628 CGTCGGCAACCTCCACTC 60.433 66.667 0.00 0.00 0.00 3.51
1188 1222 2.047179 GTCGGCAACCTCCACTCC 60.047 66.667 0.00 0.00 0.00 3.85
1189 1223 2.525629 TCGGCAACCTCCACTCCA 60.526 61.111 0.00 0.00 0.00 3.86
1190 1224 2.046892 CGGCAACCTCCACTCCAG 60.047 66.667 0.00 0.00 0.00 3.86
1196 1230 2.100879 AACCTCCACTCCAGCGTCAC 62.101 60.000 0.00 0.00 0.00 3.67
1204 1238 2.738521 CCAGCGTCACCAACCTCG 60.739 66.667 0.00 0.00 0.00 4.63
1210 1244 1.728426 GTCACCAACCTCGACGACG 60.728 63.158 0.00 0.00 41.26 5.12
1277 1311 1.578206 GGTCGCAAGCTTCTCCAACC 61.578 60.000 0.00 0.00 37.18 3.77
1362 1396 3.688330 GTCGTCACGTGCACGGTG 61.688 66.667 39.21 31.59 44.95 4.94
1365 1399 3.036084 GTCACGTGCACGGTGAGG 61.036 66.667 39.21 23.35 44.95 3.86
1381 1415 0.898789 GAGGGACGGTCTCAAGGTCA 60.899 60.000 11.20 0.00 32.39 4.02
1423 1457 1.139853 GGATCACGCTCCTCAAATCCT 59.860 52.381 0.00 0.00 31.87 3.24
1425 1459 2.099141 TCACGCTCCTCAAATCCTTG 57.901 50.000 0.00 0.00 0.00 3.61
1461 1495 1.431440 CTCGCTCCAGGAGAAGACG 59.569 63.158 21.89 13.87 33.27 4.18
1472 1506 1.905922 GAGAAGACGGTGCAGCTTGC 61.906 60.000 14.92 2.91 45.29 4.01
1498 1532 1.197721 CCGAGGTGACAAATGACTTGC 59.802 52.381 0.00 0.00 38.75 4.01
1512 1546 7.704472 ACAAATGACTTGCTAATTCGTCAAAAA 59.296 29.630 0.00 0.00 39.52 1.94
1541 1582 5.068636 AGCGAAATTGGATTCATAGCTCAT 58.931 37.500 0.00 0.00 0.00 2.90
1542 1583 5.048921 AGCGAAATTGGATTCATAGCTCATG 60.049 40.000 0.00 0.00 35.81 3.07
1543 1584 5.152097 CGAAATTGGATTCATAGCTCATGC 58.848 41.667 0.00 0.00 40.05 4.06
1572 1613 1.304134 GGTTGTGTAGGGCTTGGGG 60.304 63.158 0.00 0.00 0.00 4.96
1579 1620 0.108774 GTAGGGCTTGGGGATACTGC 59.891 60.000 0.00 0.00 0.00 4.40
1680 1724 1.135257 CATGAAGCGGTCTCTCGAGTT 60.135 52.381 13.13 0.00 0.00 3.01
1682 1726 1.073768 GAAGCGGTCTCTCGAGTTGC 61.074 60.000 13.13 10.20 0.00 4.17
1809 1853 4.283403 GCTGGCCAGCGCAAACAA 62.283 61.111 40.24 0.00 45.29 2.83
1828 1872 3.758554 ACAAGGCTGCGTTTAGAATTGAT 59.241 39.130 4.63 0.00 0.00 2.57
1829 1873 4.218417 ACAAGGCTGCGTTTAGAATTGATT 59.782 37.500 4.63 0.00 0.00 2.57
1830 1874 4.361451 AGGCTGCGTTTAGAATTGATTG 57.639 40.909 0.00 0.00 0.00 2.67
1831 1875 4.009675 AGGCTGCGTTTAGAATTGATTGA 58.990 39.130 0.00 0.00 0.00 2.57
1836 1880 5.879237 TGCGTTTAGAATTGATTGATCCAC 58.121 37.500 0.00 0.00 0.00 4.02
1843 1887 6.939132 AGAATTGATTGATCCACTAGCTTG 57.061 37.500 0.00 0.00 0.00 4.01
1845 1889 6.541641 AGAATTGATTGATCCACTAGCTTGTC 59.458 38.462 0.00 0.00 0.00 3.18
1848 1892 2.654749 TGATCCACTAGCTTGTCGTG 57.345 50.000 0.00 0.00 0.00 4.35
1850 1894 1.204941 GATCCACTAGCTTGTCGTGGT 59.795 52.381 17.92 9.73 46.36 4.16
1851 1895 0.601558 TCCACTAGCTTGTCGTGGTC 59.398 55.000 17.92 0.00 46.36 4.02
1852 1896 0.317160 CCACTAGCTTGTCGTGGTCA 59.683 55.000 13.09 0.00 42.45 4.02
1853 1897 1.066858 CCACTAGCTTGTCGTGGTCAT 60.067 52.381 13.09 0.00 42.45 3.06
1862 1907 3.145212 TGTCGTGGTCATATTGACTCG 57.855 47.619 7.51 11.63 46.19 4.18
1890 1935 2.003301 GAGGATTCTTGCGGAGTTGTC 58.997 52.381 0.00 0.00 0.00 3.18
1975 2020 9.722184 ATGATATATCACTTCACTCATTTGGAG 57.278 33.333 17.60 0.00 43.76 3.86
2018 2063 5.185635 AGAGCATGTCTAGCAGATCCTTATC 59.814 44.000 0.00 0.00 31.71 1.75
2027 2072 4.411927 AGCAGATCCTTATCTCACGGTAT 58.588 43.478 0.00 0.00 40.65 2.73
2029 2074 4.021894 GCAGATCCTTATCTCACGGTATGT 60.022 45.833 0.00 0.00 40.65 2.29
2030 2075 5.183331 GCAGATCCTTATCTCACGGTATGTA 59.817 44.000 0.00 0.00 40.65 2.29
2034 2079 8.361139 AGATCCTTATCTCACGGTATGTAAAAG 58.639 37.037 0.00 0.00 38.04 2.27
2035 2080 7.649533 TCCTTATCTCACGGTATGTAAAAGA 57.350 36.000 0.00 0.00 0.00 2.52
2036 2081 8.246430 TCCTTATCTCACGGTATGTAAAAGAT 57.754 34.615 0.00 0.00 31.92 2.40
2065 2113 8.692110 AAGGAAAAACTAAAACCTGTTTTACG 57.308 30.769 10.36 9.48 43.04 3.18
2071 2119 5.063204 ACTAAAACCTGTTTTACGGTACCC 58.937 41.667 6.25 0.00 42.22 3.69
2081 2129 3.612251 CGGTACCCTCCGTGATGT 58.388 61.111 6.25 0.00 44.77 3.06
2083 2131 1.601419 CGGTACCCTCCGTGATGTGT 61.601 60.000 6.25 0.00 44.77 3.72
2084 2132 0.611714 GGTACCCTCCGTGATGTGTT 59.388 55.000 0.00 0.00 0.00 3.32
2085 2133 1.674817 GGTACCCTCCGTGATGTGTTG 60.675 57.143 0.00 0.00 0.00 3.33
2094 2142 3.259625 TCCGTGATGTGTTGGAACAGATA 59.740 43.478 2.37 0.00 42.21 1.98
2127 2188 2.027625 CGCACCCGTGGTCTTCTTC 61.028 63.158 0.00 0.00 31.02 2.87
2130 2191 1.797025 CACCCGTGGTCTTCTTCTTC 58.203 55.000 0.00 0.00 31.02 2.87
2146 2207 2.529005 CTTCTTCCTCTCACGCGCGA 62.529 60.000 39.36 14.99 0.00 5.87
2153 2220 3.168604 CTCACGCGCGACTGTCTG 61.169 66.667 39.36 23.16 0.00 3.51
2160 2227 1.874019 CGCGACTGTCTGAATCCCG 60.874 63.158 0.00 0.00 0.00 5.14
2190 2257 4.097437 ACAGATCATCATCAACCATTGCAC 59.903 41.667 0.00 0.00 0.00 4.57
2204 2271 3.444742 CCATTGCACACATGGTGTAGATT 59.555 43.478 7.62 0.15 45.65 2.40
2205 2272 4.417506 CATTGCACACATGGTGTAGATTG 58.582 43.478 13.59 6.82 45.65 2.67
2206 2273 3.415457 TGCACACATGGTGTAGATTGA 57.585 42.857 13.59 0.00 45.65 2.57
2207 2274 3.749226 TGCACACATGGTGTAGATTGAA 58.251 40.909 13.59 0.00 45.65 2.69
2208 2275 3.752747 TGCACACATGGTGTAGATTGAAG 59.247 43.478 13.59 0.00 45.65 3.02
2209 2276 3.127548 GCACACATGGTGTAGATTGAAGG 59.872 47.826 13.59 0.00 45.65 3.46
2210 2277 3.127548 CACACATGGTGTAGATTGAAGGC 59.872 47.826 1.15 0.00 45.65 4.35
2211 2278 3.009473 ACACATGGTGTAGATTGAAGGCT 59.991 43.478 0.00 0.00 45.56 4.58
2212 2279 4.225042 ACACATGGTGTAGATTGAAGGCTA 59.775 41.667 0.00 0.00 45.56 3.93
2213 2280 4.813161 CACATGGTGTAGATTGAAGGCTAG 59.187 45.833 0.00 0.00 0.00 3.42
2214 2281 4.716784 ACATGGTGTAGATTGAAGGCTAGA 59.283 41.667 0.00 0.00 0.00 2.43
2215 2282 5.189736 ACATGGTGTAGATTGAAGGCTAGAA 59.810 40.000 0.00 0.00 0.00 2.10
2243 2310 2.508586 GAAGACTGGAGCGTGACCCC 62.509 65.000 0.00 0.00 0.00 4.95
2244 2311 2.997897 GACTGGAGCGTGACCCCT 60.998 66.667 0.00 0.00 0.00 4.79
2264 2331 2.872557 CGAGTCGCCGTACTTGGA 59.127 61.111 0.00 0.00 0.00 3.53
2294 2362 2.308722 GGGCAGGTCAGGATGGGAA 61.309 63.158 0.00 0.00 36.16 3.97
2331 2399 1.523711 CACCACACAGTCCGTTGCT 60.524 57.895 0.00 0.00 0.00 3.91
2338 2406 2.967076 AGTCCGTTGCTGCACACG 60.967 61.111 21.79 21.79 0.00 4.49
2350 2418 1.965930 GCACACGATGAACCAGGCA 60.966 57.895 0.00 0.00 0.00 4.75
2421 2489 2.353839 CCGCAACTGCTTGTGCAC 60.354 61.111 10.75 10.75 45.31 4.57
2423 2491 2.353839 GCAACTGCTTGTGCACCG 60.354 61.111 15.69 6.63 45.31 4.94
2425 2493 3.952675 AACTGCTTGTGCACCGCG 61.953 61.111 15.69 14.50 45.31 6.46
2446 2514 1.078918 CACCTCTTCAGCGATGCCA 60.079 57.895 0.00 0.00 0.00 4.92
2449 2517 0.674581 CCTCTTCAGCGATGCCAACA 60.675 55.000 0.00 0.00 0.00 3.33
2473 2541 4.657824 CCGTCCACGAACAGCCGT 62.658 66.667 0.00 0.00 44.43 5.68
2500 2568 2.202756 GGCATGTCGTCGTCCCTC 60.203 66.667 0.00 0.00 0.00 4.30
2515 2583 4.399395 CTCCCAAGGAGCAGCGCA 62.399 66.667 11.47 0.00 43.29 6.09
2516 2584 4.399395 TCCCAAGGAGCAGCGCAG 62.399 66.667 11.47 1.31 0.00 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 0.173708 CGACTGTGCCTCTTAGGTCC 59.826 60.000 0.00 0.00 37.80 4.46
45 48 0.808755 ACCGCGGGATTGATTTTGAC 59.191 50.000 31.76 0.00 0.00 3.18
101 107 1.774254 TGGATGAAGTGTGGGTCTTGT 59.226 47.619 0.00 0.00 0.00 3.16
253 259 6.250344 GGTTACTTACCTCACCATCAAAAC 57.750 41.667 0.00 0.00 44.10 2.43
262 268 7.738950 TGTAACTCACATGGTTACTTACCTCAC 60.739 40.741 18.35 0.23 45.19 3.51
299 305 6.626302 TCATCTTTTCAAAGTCACGGTTTTT 58.374 32.000 0.00 0.00 37.31 1.94
310 316 5.981315 ACATGCACTGTTCATCTTTTCAAAG 59.019 36.000 0.00 0.00 32.90 2.77
315 321 9.793252 GAATAATACATGCACTGTTCATCTTTT 57.207 29.630 7.02 0.00 39.39 2.27
345 351 9.833917 GCTCTTATATTAGTTTACAAAGGGAGT 57.166 33.333 0.00 0.00 0.00 3.85
346 352 8.979574 CGCTCTTATATTAGTTTACAAAGGGAG 58.020 37.037 0.00 0.00 0.00 4.30
347 353 8.480501 ACGCTCTTATATTAGTTTACAAAGGGA 58.519 33.333 0.00 0.00 0.00 4.20
348 354 8.658499 ACGCTCTTATATTAGTTTACAAAGGG 57.342 34.615 0.00 0.00 0.00 3.95
362 368 9.847706 CACTATGTGATCTAAACGCTCTTATAT 57.152 33.333 0.00 0.00 35.23 0.86
363 369 9.063615 TCACTATGTGATCTAAACGCTCTTATA 57.936 33.333 0.00 0.00 37.67 0.98
364 370 7.941919 TCACTATGTGATCTAAACGCTCTTAT 58.058 34.615 0.00 0.00 37.67 1.73
365 371 7.329588 TCACTATGTGATCTAAACGCTCTTA 57.670 36.000 0.00 0.00 37.67 2.10
366 372 6.208988 TCACTATGTGATCTAAACGCTCTT 57.791 37.500 0.00 0.00 37.67 2.85
367 373 5.836821 TCACTATGTGATCTAAACGCTCT 57.163 39.130 0.00 0.00 37.67 4.09
379 385 5.836821 AGAGCGTTTAGATCACTATGTGA 57.163 39.130 2.77 2.77 46.90 3.58
380 386 9.847706 ATATAAGAGCGTTTAGATCACTATGTG 57.152 33.333 0.00 0.00 37.82 3.21
393 399 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
394 400 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
395 401 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
396 402 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
397 403 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
408 414 9.765295 TTCTAAATAGTACTCCCTCTGTAAACT 57.235 33.333 0.00 0.00 0.00 2.66
412 418 9.931698 TCATTTCTAAATAGTACTCCCTCTGTA 57.068 33.333 0.00 0.00 0.00 2.74
413 419 8.697292 GTCATTTCTAAATAGTACTCCCTCTGT 58.303 37.037 0.00 0.00 0.00 3.41
414 420 8.145122 GGTCATTTCTAAATAGTACTCCCTCTG 58.855 40.741 0.00 0.00 0.00 3.35
415 421 7.844779 TGGTCATTTCTAAATAGTACTCCCTCT 59.155 37.037 0.00 0.00 0.00 3.69
416 422 8.019656 TGGTCATTTCTAAATAGTACTCCCTC 57.980 38.462 0.00 0.00 0.00 4.30
417 423 7.989947 TGGTCATTTCTAAATAGTACTCCCT 57.010 36.000 0.00 0.00 0.00 4.20
418 424 9.628500 AAATGGTCATTTCTAAATAGTACTCCC 57.372 33.333 0.00 0.00 36.34 4.30
487 500 7.499895 TCTGCATGATCATTATTACACATGTGT 59.500 33.333 32.47 32.47 46.87 3.72
488 501 7.867752 TCTGCATGATCATTATTACACATGTG 58.132 34.615 24.25 24.25 37.83 3.21
607 638 4.410099 AGAGAAGCTAGAGAGATGGATGG 58.590 47.826 0.00 0.00 0.00 3.51
609 640 5.079643 GGAAGAGAAGCTAGAGAGATGGAT 58.920 45.833 0.00 0.00 0.00 3.41
758 790 1.743995 GATTTACCCCAGCACGCGT 60.744 57.895 5.58 5.58 0.00 6.01
759 791 1.302383 TTGATTTACCCCAGCACGCG 61.302 55.000 3.53 3.53 0.00 6.01
793 825 1.770658 TCATGGGGAATCTTCTGCGAT 59.229 47.619 0.00 0.00 0.00 4.58
961 995 1.246737 GGCAGTGGCTCCCTTCTTTG 61.247 60.000 9.90 0.00 40.87 2.77
965 999 0.613012 ATTTGGCAGTGGCTCCCTTC 60.613 55.000 18.53 0.00 40.87 3.46
996 1030 5.473162 CACCAACAACTTCATGGTCATTAGA 59.527 40.000 0.00 0.00 45.45 2.10
997 1031 5.335897 CCACCAACAACTTCATGGTCATTAG 60.336 44.000 0.00 0.00 45.45 1.73
1065 1099 0.797542 AGAAGAGGAAGTCGACGACG 59.202 55.000 21.44 0.00 37.67 5.12
1067 1101 1.451067 GGAGAAGAGGAAGTCGACGA 58.549 55.000 10.46 0.00 0.00 4.20
1128 1162 2.755469 CCAAACATGGAGCCCGGG 60.755 66.667 19.09 19.09 0.00 5.73
1131 1165 3.010413 GCTGCCAAACATGGAGCCC 62.010 63.158 0.00 0.00 0.00 5.19
1141 1175 3.959975 GTTGCCGACGCTGCCAAA 61.960 61.111 0.00 0.00 35.36 3.28
1165 1199 4.373116 GAGGTTGCCGACGCTGGA 62.373 66.667 0.00 0.00 35.36 3.86
1174 1208 2.360475 GCTGGAGTGGAGGTTGCC 60.360 66.667 0.00 0.00 0.00 4.52
1175 1209 2.743928 CGCTGGAGTGGAGGTTGC 60.744 66.667 0.00 0.00 0.00 4.17
1176 1210 1.374758 GACGCTGGAGTGGAGGTTG 60.375 63.158 0.00 0.00 0.00 3.77
1177 1211 1.837051 TGACGCTGGAGTGGAGGTT 60.837 57.895 0.00 0.00 0.00 3.50
1178 1212 2.203640 TGACGCTGGAGTGGAGGT 60.204 61.111 0.00 0.00 0.00 3.85
1179 1213 2.262915 GTGACGCTGGAGTGGAGG 59.737 66.667 0.00 0.00 0.00 4.30
1180 1214 2.099652 TTGGTGACGCTGGAGTGGAG 62.100 60.000 0.00 0.00 0.00 3.86
1181 1215 2.137528 TTGGTGACGCTGGAGTGGA 61.138 57.895 0.00 0.00 0.00 4.02
1182 1216 1.961277 GTTGGTGACGCTGGAGTGG 60.961 63.158 0.00 0.00 0.00 4.00
1183 1217 1.961277 GGTTGGTGACGCTGGAGTG 60.961 63.158 0.00 0.00 0.00 3.51
1184 1218 2.100879 GAGGTTGGTGACGCTGGAGT 62.101 60.000 0.00 0.00 0.00 3.85
1185 1219 1.374758 GAGGTTGGTGACGCTGGAG 60.375 63.158 0.00 0.00 0.00 3.86
1186 1220 2.741092 GAGGTTGGTGACGCTGGA 59.259 61.111 0.00 0.00 0.00 3.86
1187 1221 2.738521 CGAGGTTGGTGACGCTGG 60.739 66.667 0.00 0.00 0.00 4.85
1188 1222 2.022129 GTCGAGGTTGGTGACGCTG 61.022 63.158 0.00 0.00 0.00 5.18
1189 1223 2.338984 GTCGAGGTTGGTGACGCT 59.661 61.111 0.00 0.00 0.00 5.07
1196 1230 1.069378 GTAAGCGTCGTCGAGGTTGG 61.069 60.000 15.66 0.00 39.71 3.77
1204 1238 1.708027 GGCACATGTAAGCGTCGTC 59.292 57.895 0.00 0.00 0.00 4.20
1210 1244 2.399611 GTCGCGGCACATGTAAGC 59.600 61.111 5.47 3.56 0.00 3.09
1257 1291 1.667830 TTGGAGAAGCTTGCGACCG 60.668 57.895 2.10 0.00 0.00 4.79
1258 1292 1.578206 GGTTGGAGAAGCTTGCGACC 61.578 60.000 2.10 1.38 36.04 4.79
1323 1357 1.179152 CCTGCACAAATCCAGATGCA 58.821 50.000 0.00 0.00 45.45 3.96
1332 1366 1.303317 GACGACCCCCTGCACAAAT 60.303 57.895 0.00 0.00 0.00 2.32
1355 1389 4.736896 GACCGTCCCTCACCGTGC 62.737 72.222 0.00 0.00 0.00 5.34
1362 1396 0.898789 TGACCTTGAGACCGTCCCTC 60.899 60.000 0.00 0.00 0.00 4.30
1365 1399 1.080705 CGTGACCTTGAGACCGTCC 60.081 63.158 0.00 0.00 0.00 4.79
1370 1404 2.432628 CGGGCGTGACCTTGAGAC 60.433 66.667 0.00 0.00 39.10 3.36
1381 1415 4.760047 GATGGCTGACACGGGCGT 62.760 66.667 0.00 0.00 38.19 5.68
1423 1457 1.031571 GCGATGTCCTTGATGCCCAA 61.032 55.000 0.00 0.00 0.00 4.12
1425 1459 2.189499 GGCGATGTCCTTGATGCCC 61.189 63.158 0.00 0.00 36.51 5.36
1472 1506 3.818121 TTTGTCACCTCGGCGTGGG 62.818 63.158 29.03 22.65 34.36 4.61
1512 1546 8.416329 AGCTATGAATCCAATTTCGCTTAAATT 58.584 29.630 0.00 1.89 46.48 1.82
1513 1547 7.945134 AGCTATGAATCCAATTTCGCTTAAAT 58.055 30.769 0.00 0.00 39.56 1.40
1519 1553 4.818534 TGAGCTATGAATCCAATTTCGC 57.181 40.909 0.00 0.00 0.00 4.70
1541 1582 4.699735 CCTACACAACCACATTATCAAGCA 59.300 41.667 0.00 0.00 0.00 3.91
1542 1583 4.096382 CCCTACACAACCACATTATCAAGC 59.904 45.833 0.00 0.00 0.00 4.01
1543 1584 4.096382 GCCCTACACAACCACATTATCAAG 59.904 45.833 0.00 0.00 0.00 3.02
1544 1585 4.013728 GCCCTACACAACCACATTATCAA 58.986 43.478 0.00 0.00 0.00 2.57
1545 1586 3.265737 AGCCCTACACAACCACATTATCA 59.734 43.478 0.00 0.00 0.00 2.15
1719 1763 4.508128 CCGGCGCTCACGTACCAT 62.508 66.667 7.64 0.00 42.83 3.55
1747 1791 1.007271 CACGACGAGAGCCACAAGT 60.007 57.895 0.00 0.00 0.00 3.16
1783 1827 2.649034 CTGGCCAGCAGCAAGTTG 59.351 61.111 22.33 0.00 46.50 3.16
1809 1853 4.009675 TCAATCAATTCTAAACGCAGCCT 58.990 39.130 0.00 0.00 0.00 4.58
1818 1862 8.049117 ACAAGCTAGTGGATCAATCAATTCTAA 58.951 33.333 0.00 0.00 0.00 2.10
1828 1872 2.959516 CACGACAAGCTAGTGGATCAA 58.040 47.619 0.00 0.00 32.68 2.57
1829 1873 2.654749 CACGACAAGCTAGTGGATCA 57.345 50.000 0.00 0.00 32.68 2.92
1836 1880 4.504461 GTCAATATGACCACGACAAGCTAG 59.496 45.833 0.00 0.00 41.37 3.42
1850 1894 4.929211 CCTCACAACAACGAGTCAATATGA 59.071 41.667 0.00 0.00 0.00 2.15
1851 1895 4.929211 TCCTCACAACAACGAGTCAATATG 59.071 41.667 0.00 0.00 0.00 1.78
1852 1896 5.147330 TCCTCACAACAACGAGTCAATAT 57.853 39.130 0.00 0.00 0.00 1.28
1853 1897 4.594123 TCCTCACAACAACGAGTCAATA 57.406 40.909 0.00 0.00 0.00 1.90
1862 1907 2.350772 CCGCAAGAATCCTCACAACAAC 60.351 50.000 0.00 0.00 43.02 3.32
1953 1998 8.370940 GGATCTCCAAATGAGTGAAGTGATATA 58.629 37.037 0.00 0.00 42.12 0.86
1956 2001 5.191323 AGGATCTCCAAATGAGTGAAGTGAT 59.809 40.000 0.00 0.00 42.12 3.06
1975 2020 4.614993 GCTCTAGCACGTGAGATAAGGATC 60.615 50.000 22.23 0.00 41.59 3.36
1976 2021 3.254657 GCTCTAGCACGTGAGATAAGGAT 59.745 47.826 22.23 0.00 41.59 3.24
1977 2022 2.619177 GCTCTAGCACGTGAGATAAGGA 59.381 50.000 22.23 5.76 41.59 3.36
1978 2023 3.006659 GCTCTAGCACGTGAGATAAGG 57.993 52.381 22.23 3.44 41.59 2.69
2009 2054 8.358148 TCTTTTACATACCGTGAGATAAGGATC 58.642 37.037 0.00 0.00 0.00 3.36
2018 2063 9.976511 TCCTTATAATCTTTTACATACCGTGAG 57.023 33.333 0.00 0.00 0.00 3.51
2071 2119 1.800586 CTGTTCCAACACATCACGGAG 59.199 52.381 0.00 0.00 34.70 4.63
2076 2124 4.002982 GCAGTATCTGTTCCAACACATCA 58.997 43.478 0.00 0.00 34.70 3.07
2078 2126 4.019792 TGCAGTATCTGTTCCAACACAT 57.980 40.909 0.00 0.00 34.70 3.21
2081 2129 5.843673 TTTTTGCAGTATCTGTTCCAACA 57.156 34.783 0.00 0.00 37.37 3.33
2083 2131 7.870445 GGTAAATTTTTGCAGTATCTGTTCCAA 59.130 33.333 0.00 0.00 33.43 3.53
2084 2132 7.375053 GGTAAATTTTTGCAGTATCTGTTCCA 58.625 34.615 0.00 0.00 33.43 3.53
2085 2133 6.526674 CGGTAAATTTTTGCAGTATCTGTTCC 59.473 38.462 0.00 0.00 33.43 3.62
2094 2142 2.547007 GGGTGCGGTAAATTTTTGCAGT 60.547 45.455 10.70 0.00 36.03 4.40
2123 2184 1.200252 CGCGTGAGAGGAAGAAGAAGA 59.800 52.381 0.00 0.00 0.00 2.87
2127 2188 2.155194 CGCGCGTGAGAGGAAGAAG 61.155 63.158 24.19 0.00 0.00 2.85
2130 2191 2.876645 GTCGCGCGTGAGAGGAAG 60.877 66.667 30.98 0.00 0.00 3.46
2146 2207 1.513158 CGCTCGGGATTCAGACAGT 59.487 57.895 0.00 0.00 0.00 3.55
2153 2220 0.105039 ATCTGTTCCGCTCGGGATTC 59.895 55.000 8.59 0.00 46.62 2.52
2160 2227 3.103447 TGATGATGATCTGTTCCGCTC 57.897 47.619 0.00 0.00 0.00 5.03
2190 2257 3.614092 AGCCTTCAATCTACACCATGTG 58.386 45.455 0.00 0.00 39.75 3.21
2204 2271 5.426509 TCTTCCTGATTCATTCTAGCCTTCA 59.573 40.000 0.00 0.00 0.00 3.02
2205 2272 5.757808 GTCTTCCTGATTCATTCTAGCCTTC 59.242 44.000 0.00 0.00 0.00 3.46
2206 2273 5.428131 AGTCTTCCTGATTCATTCTAGCCTT 59.572 40.000 0.00 0.00 0.00 4.35
2207 2274 4.968080 AGTCTTCCTGATTCATTCTAGCCT 59.032 41.667 0.00 0.00 0.00 4.58
2208 2275 5.055812 CAGTCTTCCTGATTCATTCTAGCC 58.944 45.833 0.00 0.00 44.49 3.93
2209 2276 5.055812 CCAGTCTTCCTGATTCATTCTAGC 58.944 45.833 0.00 0.00 44.49 3.42
2210 2277 6.477053 TCCAGTCTTCCTGATTCATTCTAG 57.523 41.667 0.00 0.00 44.49 2.43
2211 2278 5.163364 GCTCCAGTCTTCCTGATTCATTCTA 60.163 44.000 0.00 0.00 44.49 2.10
2212 2279 4.383989 GCTCCAGTCTTCCTGATTCATTCT 60.384 45.833 0.00 0.00 44.49 2.40
2213 2280 3.876320 GCTCCAGTCTTCCTGATTCATTC 59.124 47.826 0.00 0.00 44.49 2.67
2214 2281 3.681034 CGCTCCAGTCTTCCTGATTCATT 60.681 47.826 0.00 0.00 44.49 2.57
2215 2282 2.158986 CGCTCCAGTCTTCCTGATTCAT 60.159 50.000 0.00 0.00 44.49 2.57
2322 2390 2.317609 ATCGTGTGCAGCAACGGAC 61.318 57.895 21.90 7.40 0.00 4.79
2331 2399 1.965930 GCCTGGTTCATCGTGTGCA 60.966 57.895 0.00 0.00 0.00 4.57
2338 2406 1.930908 GCAGCAGTGCCTGGTTCATC 61.931 60.000 12.58 0.00 44.72 2.92
2379 2447 2.029288 CAGATGCTTCGCCACGTGT 61.029 57.895 15.65 0.00 0.00 4.49
2381 2449 2.434884 CCAGATGCTTCGCCACGT 60.435 61.111 0.00 0.00 0.00 4.49
2385 2453 2.124983 TCTGCCAGATGCTTCGCC 60.125 61.111 0.00 0.00 42.00 5.54
2387 2455 3.407657 GCTCTGCCAGATGCTTCG 58.592 61.111 0.00 0.00 42.00 3.79
2421 2489 2.125912 CTGAAGAGGTGGTCGCGG 60.126 66.667 6.13 0.00 0.00 6.46
2423 2491 2.564553 ATCGCTGAAGAGGTGGTCGC 62.565 60.000 0.00 0.00 0.00 5.19
2425 2493 1.086634 GCATCGCTGAAGAGGTGGTC 61.087 60.000 0.00 0.00 0.00 4.02
2446 2514 0.612732 TCGTGGACGGGAGGTATGTT 60.613 55.000 0.00 0.00 40.29 2.71
2449 2517 0.612732 TGTTCGTGGACGGGAGGTAT 60.613 55.000 0.00 0.00 40.29 2.73
2488 2556 2.572284 CTTGGGAGGGACGACGAC 59.428 66.667 0.00 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.