Multiple sequence alignment - TraesCS3D01G089600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G089600 chr3D 100.000 6199 0 0 1 6199 45405693 45411891 0.000000e+00 11448.0
1 TraesCS3D01G089600 chr3D 80.530 868 161 5 4347 5208 527667673 527668538 0.000000e+00 660.0
2 TraesCS3D01G089600 chr3D 93.286 283 19 0 24 306 145564558 145564276 9.610000e-113 418.0
3 TraesCS3D01G089600 chr3A 90.795 4389 303 55 1869 6199 57196974 57201319 0.000000e+00 5773.0
4 TraesCS3D01G089600 chr3A 83.370 920 78 33 304 1197 57194784 57195654 0.000000e+00 782.0
5 TraesCS3D01G089600 chr3A 80.415 868 162 5 4347 5208 662396930 662397795 0.000000e+00 654.0
6 TraesCS3D01G089600 chr3A 91.573 356 23 2 1203 1551 57195694 57196049 9.340000e-133 484.0
7 TraesCS3D01G089600 chr3A 100.000 40 0 0 1553 1592 57196078 57196117 2.400000e-09 75.0
8 TraesCS3D01G089600 chr3B 90.067 2688 158 45 3238 5877 71118584 71121210 0.000000e+00 3384.0
9 TraesCS3D01G089600 chr3B 92.532 1821 125 6 4386 6199 71143495 71145311 0.000000e+00 2599.0
10 TraesCS3D01G089600 chr3B 86.132 1435 116 36 307 1699 71116836 71118229 0.000000e+00 1471.0
11 TraesCS3D01G089600 chr3B 86.464 1315 108 34 307 1585 71141173 71142453 0.000000e+00 1378.0
12 TraesCS3D01G089600 chr3B 80.300 868 163 5 4347 5208 697901404 697902269 0.000000e+00 649.0
13 TraesCS3D01G089600 chr3B 92.920 226 15 1 2957 3182 71118361 71118585 1.670000e-85 327.0
14 TraesCS3D01G089600 chr7D 94.982 279 13 1 29 307 119293466 119293743 2.650000e-118 436.0
15 TraesCS3D01G089600 chr7D 93.907 279 15 2 29 307 69303495 69303219 2.670000e-113 420.0
16 TraesCS3D01G089600 chr7D 81.988 161 28 1 2074 2233 607050650 607050490 1.080000e-27 135.0
17 TraesCS3D01G089600 chr1D 94.624 279 14 1 29 307 344235916 344235639 1.230000e-116 431.0
18 TraesCS3D01G089600 chr1D 83.453 417 54 13 2422 2830 460919121 460919530 2.110000e-99 374.0
19 TraesCS3D01G089600 chr4D 94.265 279 15 1 29 307 212032173 212031896 5.740000e-115 425.0
20 TraesCS3D01G089600 chr4D 94.265 279 15 1 29 307 293775794 293776071 5.740000e-115 425.0
21 TraesCS3D01G089600 chr4D 93.907 279 16 1 29 307 201924655 201924378 2.670000e-113 420.0
22 TraesCS3D01G089600 chr4D 93.907 279 16 1 29 307 222210879 222210602 2.670000e-113 420.0
23 TraesCS3D01G089600 chr4D 85.222 203 29 1 2024 2225 47748600 47748802 2.260000e-49 207.0
24 TraesCS3D01G089600 chr4D 82.123 179 19 11 1707 1879 306544029 306543858 2.330000e-29 141.0
25 TraesCS3D01G089600 chr2D 94.265 279 14 2 29 307 97075133 97074857 5.740000e-115 425.0
26 TraesCS3D01G089600 chr2D 91.803 122 9 1 1710 1831 166582247 166582127 1.070000e-37 169.0
27 TraesCS3D01G089600 chr2D 94.444 36 2 0 1639 1674 134789768 134789733 8.680000e-04 56.5
28 TraesCS3D01G089600 chrUn 85.823 395 45 10 2434 2821 293211550 293211160 5.780000e-110 409.0
29 TraesCS3D01G089600 chrUn 97.059 34 1 0 1640 1673 336907475 336907442 2.410000e-04 58.4
30 TraesCS3D01G089600 chrUn 97.059 34 1 0 1640 1673 343555129 343555162 2.410000e-04 58.4
31 TraesCS3D01G089600 chr7A 85.823 395 45 10 2434 2821 33654977 33654587 5.780000e-110 409.0
32 TraesCS3D01G089600 chr7A 88.000 75 9 0 2840 2914 50426847 50426921 8.560000e-14 89.8
33 TraesCS3D01G089600 chr7B 85.052 388 51 7 2427 2810 611493886 611494270 7.540000e-104 388.0
34 TraesCS3D01G089600 chr7B 85.106 376 47 8 2447 2816 380731382 380731010 5.870000e-100 375.0
35 TraesCS3D01G089600 chr7B 78.488 172 28 8 2022 2186 97043538 97043707 3.060000e-18 104.0
36 TraesCS3D01G089600 chr7B 79.085 153 30 2 2074 2225 692598069 692598220 3.060000e-18 104.0
37 TraesCS3D01G089600 chr4B 85.128 390 44 10 2437 2821 34875357 34874977 2.710000e-103 387.0
38 TraesCS3D01G089600 chr6D 85.117 383 47 8 2434 2810 464534892 464534514 3.510000e-102 383.0
39 TraesCS3D01G089600 chr4A 83.292 407 54 12 2422 2821 666798302 666798701 4.570000e-96 363.0
40 TraesCS3D01G089600 chr4A 93.182 44 3 0 1630 1673 318044464 318044421 1.440000e-06 65.8
41 TraesCS3D01G089600 chr1B 86.538 156 20 1 1713 1867 637398087 637397932 2.970000e-38 171.0
42 TraesCS3D01G089600 chr1B 77.830 212 41 5 2024 2233 8561499 8561292 6.520000e-25 126.0
43 TraesCS3D01G089600 chr1B 80.795 151 27 2 2021 2170 172250271 172250420 3.930000e-22 117.0
44 TraesCS3D01G089600 chr1A 87.333 150 15 2 1714 1862 430181740 430181886 1.070000e-37 169.0
45 TraesCS3D01G089600 chr6A 89.922 129 10 3 1705 1831 70223516 70223643 4.970000e-36 163.0
46 TraesCS3D01G089600 chr6A 94.737 38 2 0 1629 1666 562943411 562943448 6.710000e-05 60.2
47 TraesCS3D01G089600 chr6B 82.258 186 20 10 1700 1879 503085623 503085445 1.390000e-31 148.0
48 TraesCS3D01G089600 chr6B 82.123 179 20 10 1707 1879 496271497 496271669 6.480000e-30 143.0
49 TraesCS3D01G089600 chr6B 93.182 44 2 1 1630 1673 499017228 499017186 5.190000e-06 63.9
50 TraesCS3D01G089600 chr5D 82.486 177 17 9 1707 1879 442791810 442791644 6.480000e-30 143.0
51 TraesCS3D01G089600 chr5D 82.123 179 18 11 1707 1879 495681066 495680896 2.330000e-29 141.0
52 TraesCS3D01G089600 chr5D 79.891 184 35 1 2042 2223 563860469 563860652 3.900000e-27 134.0
53 TraesCS3D01G089600 chr2B 79.085 153 30 2 2072 2223 254232574 254232423 3.060000e-18 104.0
54 TraesCS3D01G089600 chr2B 81.250 80 13 2 2021 2099 468321072 468320994 5.190000e-06 63.9
55 TraesCS3D01G089600 chr2A 97.222 36 1 0 1632 1667 171955770 171955805 1.870000e-05 62.1
56 TraesCS3D01G089600 chr5A 87.755 49 1 5 1628 1674 653713998 653714043 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G089600 chr3D 45405693 45411891 6198 False 11448.000000 11448 100.000000 1 6199 1 chr3D.!!$F1 6198
1 TraesCS3D01G089600 chr3D 527667673 527668538 865 False 660.000000 660 80.530000 4347 5208 1 chr3D.!!$F2 861
2 TraesCS3D01G089600 chr3A 57194784 57201319 6535 False 1778.500000 5773 91.434500 304 6199 4 chr3A.!!$F2 5895
3 TraesCS3D01G089600 chr3A 662396930 662397795 865 False 654.000000 654 80.415000 4347 5208 1 chr3A.!!$F1 861
4 TraesCS3D01G089600 chr3B 71141173 71145311 4138 False 1988.500000 2599 89.498000 307 6199 2 chr3B.!!$F3 5892
5 TraesCS3D01G089600 chr3B 71116836 71121210 4374 False 1727.333333 3384 89.706333 307 5877 3 chr3B.!!$F2 5570
6 TraesCS3D01G089600 chr3B 697901404 697902269 865 False 649.000000 649 80.300000 4347 5208 1 chr3B.!!$F1 861

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
599 614 0.325272 TACACCAGCGTGGCCAATAA 59.675 50.000 7.24 0.0 44.86 1.40 F
2044 2946 0.249447 CGCACGCCCTATCTTCATGA 60.249 55.000 0.00 0.0 0.00 3.07 F
2340 3244 0.322456 TGGCAGTCCCAATGCACTAC 60.322 55.000 0.00 0.0 45.68 2.73 F
3470 4508 2.627515 ATGACATCCCCACGATCTTG 57.372 50.000 0.00 0.0 0.00 3.02 F
4095 5165 3.802948 AGTGAAAGTCCATACTAGCCG 57.197 47.619 0.00 0.0 33.75 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2047 2949 0.036448 TGACTCGGTCTCTCGGACTT 59.964 55.000 5.77 0.0 43.97 3.01 R
2995 4012 1.539827 GGCAGTTCCAACGCTTGTATT 59.460 47.619 6.34 0.0 34.01 1.89 R
4169 5240 2.711009 GGTCCCAGATTGATATGACCCA 59.289 50.000 0.00 0.0 37.00 4.51 R
5054 6183 2.418628 GTCCACATTTGTGTATGGTCCG 59.581 50.000 9.66 0.0 44.21 4.79 R
5896 7031 0.037697 TGGTTCGGTTCATGTCCTCG 60.038 55.000 0.00 0.0 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.582667 GCAGTTAATTGGGTTAATATGACCT 57.417 36.000 8.08 0.00 37.34 3.85
25 26 7.425606 GCAGTTAATTGGGTTAATATGACCTG 58.574 38.462 8.08 0.00 37.34 4.00
26 27 7.068226 GCAGTTAATTGGGTTAATATGACCTGT 59.932 37.037 8.08 0.00 37.34 4.00
27 28 8.405531 CAGTTAATTGGGTTAATATGACCTGTG 58.594 37.037 8.08 0.00 37.34 3.66
28 29 8.333235 AGTTAATTGGGTTAATATGACCTGTGA 58.667 33.333 8.08 0.00 37.34 3.58
29 30 8.621286 GTTAATTGGGTTAATATGACCTGTGAG 58.379 37.037 8.08 0.00 37.34 3.51
30 31 4.771114 TGGGTTAATATGACCTGTGAGG 57.229 45.455 8.08 0.00 42.49 3.86
31 32 3.118038 TGGGTTAATATGACCTGTGAGGC 60.118 47.826 8.08 0.00 39.63 4.70
32 33 3.136626 GGGTTAATATGACCTGTGAGGCT 59.863 47.826 8.08 0.00 39.63 4.58
33 34 4.347000 GGGTTAATATGACCTGTGAGGCTA 59.653 45.833 8.08 0.00 39.63 3.93
34 35 5.163237 GGGTTAATATGACCTGTGAGGCTAA 60.163 44.000 8.08 0.00 39.63 3.09
35 36 6.465894 GGGTTAATATGACCTGTGAGGCTAAT 60.466 42.308 8.08 0.00 39.63 1.73
36 37 6.651225 GGTTAATATGACCTGTGAGGCTAATC 59.349 42.308 0.00 0.00 39.63 1.75
37 38 5.894298 AATATGACCTGTGAGGCTAATCA 57.106 39.130 0.00 0.00 39.63 2.57
38 39 6.445451 AATATGACCTGTGAGGCTAATCAT 57.555 37.500 0.00 0.00 39.63 2.45
39 40 7.559335 AATATGACCTGTGAGGCTAATCATA 57.441 36.000 0.00 0.00 39.63 2.15
40 41 4.944619 TGACCTGTGAGGCTAATCATAG 57.055 45.455 0.00 4.65 39.63 2.23
41 42 4.290093 TGACCTGTGAGGCTAATCATAGT 58.710 43.478 0.00 0.00 39.63 2.12
42 43 4.100035 TGACCTGTGAGGCTAATCATAGTG 59.900 45.833 0.00 4.96 39.63 2.74
43 44 3.389329 ACCTGTGAGGCTAATCATAGTGG 59.611 47.826 0.00 0.00 39.63 4.00
44 45 3.244353 CCTGTGAGGCTAATCATAGTGGG 60.244 52.174 0.00 0.00 36.88 4.61
45 46 2.705658 TGTGAGGCTAATCATAGTGGGG 59.294 50.000 0.00 0.00 0.00 4.96
46 47 2.972713 GTGAGGCTAATCATAGTGGGGA 59.027 50.000 0.00 0.00 0.00 4.81
47 48 3.584848 GTGAGGCTAATCATAGTGGGGAT 59.415 47.826 0.00 0.00 0.00 3.85
48 49 4.777896 GTGAGGCTAATCATAGTGGGGATA 59.222 45.833 0.00 0.00 0.00 2.59
49 50 5.248477 GTGAGGCTAATCATAGTGGGGATAA 59.752 44.000 0.00 0.00 0.00 1.75
50 51 5.248477 TGAGGCTAATCATAGTGGGGATAAC 59.752 44.000 0.00 0.00 0.00 1.89
51 52 5.162637 AGGCTAATCATAGTGGGGATAACA 58.837 41.667 0.00 0.00 0.00 2.41
52 53 5.792712 AGGCTAATCATAGTGGGGATAACAT 59.207 40.000 0.00 0.00 0.00 2.71
53 54 6.965866 AGGCTAATCATAGTGGGGATAACATA 59.034 38.462 0.00 0.00 0.00 2.29
54 55 7.461043 AGGCTAATCATAGTGGGGATAACATAA 59.539 37.037 0.00 0.00 0.00 1.90
55 56 7.553044 GGCTAATCATAGTGGGGATAACATAAC 59.447 40.741 0.00 0.00 0.00 1.89
56 57 7.553044 GCTAATCATAGTGGGGATAACATAACC 59.447 40.741 0.00 0.00 0.00 2.85
57 58 5.477607 TCATAGTGGGGATAACATAACCG 57.522 43.478 0.00 0.00 0.00 4.44
58 59 4.285003 TCATAGTGGGGATAACATAACCGG 59.715 45.833 0.00 0.00 0.00 5.28
59 60 2.484602 AGTGGGGATAACATAACCGGT 58.515 47.619 0.00 0.00 0.00 5.28
60 61 3.656496 AGTGGGGATAACATAACCGGTA 58.344 45.455 8.00 0.00 0.00 4.02
61 62 4.039339 AGTGGGGATAACATAACCGGTAA 58.961 43.478 8.00 0.00 0.00 2.85
62 63 4.129380 GTGGGGATAACATAACCGGTAAC 58.871 47.826 8.00 0.00 0.00 2.50
63 64 3.779183 TGGGGATAACATAACCGGTAACA 59.221 43.478 8.00 0.00 0.00 2.41
64 65 4.412858 TGGGGATAACATAACCGGTAACAT 59.587 41.667 8.00 0.00 0.00 2.71
65 66 4.758165 GGGGATAACATAACCGGTAACATG 59.242 45.833 8.00 14.59 0.00 3.21
66 67 4.214758 GGGATAACATAACCGGTAACATGC 59.785 45.833 8.00 0.93 0.00 4.06
67 68 4.817464 GGATAACATAACCGGTAACATGCA 59.183 41.667 8.00 4.47 0.00 3.96
68 69 5.297278 GGATAACATAACCGGTAACATGCAA 59.703 40.000 8.00 4.47 0.00 4.08
69 70 6.016610 GGATAACATAACCGGTAACATGCAAT 60.017 38.462 8.00 9.00 0.00 3.56
70 71 5.652994 AACATAACCGGTAACATGCAATT 57.347 34.783 8.00 0.19 0.00 2.32
71 72 4.992688 ACATAACCGGTAACATGCAATTG 58.007 39.130 8.00 0.00 0.00 2.32
72 73 4.142271 ACATAACCGGTAACATGCAATTGG 60.142 41.667 8.00 0.00 0.00 3.16
73 74 1.181786 ACCGGTAACATGCAATTGGG 58.818 50.000 4.49 0.00 0.00 4.12
74 75 1.272203 ACCGGTAACATGCAATTGGGA 60.272 47.619 4.49 0.00 0.00 4.37
75 76 1.134175 CCGGTAACATGCAATTGGGAC 59.866 52.381 7.72 0.00 0.00 4.46
76 77 2.091541 CGGTAACATGCAATTGGGACT 58.908 47.619 7.72 0.00 0.00 3.85
77 78 3.275143 CGGTAACATGCAATTGGGACTA 58.725 45.455 7.72 0.00 0.00 2.59
78 79 3.312421 CGGTAACATGCAATTGGGACTAG 59.688 47.826 7.72 0.00 0.00 2.57
79 80 3.066760 GGTAACATGCAATTGGGACTAGC 59.933 47.826 7.72 0.00 0.00 3.42
80 81 2.512692 ACATGCAATTGGGACTAGCA 57.487 45.000 7.72 0.00 39.79 3.49
81 82 2.806434 ACATGCAATTGGGACTAGCAA 58.194 42.857 7.72 0.00 38.85 3.91
82 83 3.164268 ACATGCAATTGGGACTAGCAAA 58.836 40.909 7.72 0.00 38.85 3.68
83 84 3.056607 ACATGCAATTGGGACTAGCAAAC 60.057 43.478 7.72 0.00 38.85 2.93
84 85 2.591923 TGCAATTGGGACTAGCAAACA 58.408 42.857 7.72 0.00 31.42 2.83
85 86 3.164268 TGCAATTGGGACTAGCAAACAT 58.836 40.909 7.72 0.00 31.42 2.71
86 87 3.056678 TGCAATTGGGACTAGCAAACATG 60.057 43.478 7.72 0.00 31.42 3.21
87 88 3.514645 CAATTGGGACTAGCAAACATGC 58.485 45.455 0.00 0.00 0.00 4.06
89 90 2.584835 TGGGACTAGCAAACATGCTT 57.415 45.000 8.79 0.00 43.52 3.91
90 91 3.712016 TGGGACTAGCAAACATGCTTA 57.288 42.857 8.79 0.00 43.52 3.09
91 92 4.235079 TGGGACTAGCAAACATGCTTAT 57.765 40.909 8.79 0.00 43.52 1.73
92 93 3.947196 TGGGACTAGCAAACATGCTTATG 59.053 43.478 8.79 3.17 43.52 1.90
93 94 3.947834 GGGACTAGCAAACATGCTTATGT 59.052 43.478 8.79 6.15 43.52 2.29
94 95 4.201950 GGGACTAGCAAACATGCTTATGTG 60.202 45.833 8.79 0.00 43.52 3.21
95 96 4.201950 GGACTAGCAAACATGCTTATGTGG 60.202 45.833 8.79 0.00 43.52 4.17
96 97 2.660189 AGCAAACATGCTTATGTGGC 57.340 45.000 0.00 8.42 43.52 5.01
97 98 1.894466 AGCAAACATGCTTATGTGGCA 59.106 42.857 15.17 0.00 43.52 4.92
98 99 1.994779 GCAAACATGCTTATGTGGCAC 59.005 47.619 11.55 11.55 42.69 5.01
99 100 2.609984 GCAAACATGCTTATGTGGCACA 60.610 45.455 24.36 24.36 42.69 4.57
117 118 7.144722 TGGCACACAATTAAATAAGAGAGTG 57.855 36.000 0.00 0.00 0.00 3.51
118 119 6.939730 TGGCACACAATTAAATAAGAGAGTGA 59.060 34.615 0.00 0.00 0.00 3.41
119 120 7.119699 TGGCACACAATTAAATAAGAGAGTGAG 59.880 37.037 0.00 0.00 0.00 3.51
120 121 7.414540 GGCACACAATTAAATAAGAGAGTGAGG 60.415 40.741 0.00 0.00 0.00 3.86
121 122 7.414540 GCACACAATTAAATAAGAGAGTGAGGG 60.415 40.741 0.00 0.00 0.00 4.30
122 123 7.607991 CACACAATTAAATAAGAGAGTGAGGGT 59.392 37.037 0.00 0.00 0.00 4.34
123 124 8.164070 ACACAATTAAATAAGAGAGTGAGGGTT 58.836 33.333 0.00 0.00 0.00 4.11
124 125 9.667107 CACAATTAAATAAGAGAGTGAGGGTTA 57.333 33.333 0.00 0.00 0.00 2.85
132 133 9.710818 AATAAGAGAGTGAGGGTTATAGTTACA 57.289 33.333 0.00 0.00 0.00 2.41
133 134 9.884814 ATAAGAGAGTGAGGGTTATAGTTACAT 57.115 33.333 0.00 0.00 0.00 2.29
135 136 8.927675 AGAGAGTGAGGGTTATAGTTACATAG 57.072 38.462 0.00 0.00 0.00 2.23
136 137 7.945664 AGAGAGTGAGGGTTATAGTTACATAGG 59.054 40.741 0.00 0.00 0.00 2.57
137 138 7.593653 AGAGTGAGGGTTATAGTTACATAGGT 58.406 38.462 0.00 0.00 0.00 3.08
138 139 8.730948 AGAGTGAGGGTTATAGTTACATAGGTA 58.269 37.037 0.00 0.00 0.00 3.08
139 140 8.937207 AGTGAGGGTTATAGTTACATAGGTAG 57.063 38.462 0.00 0.00 0.00 3.18
140 141 8.730948 AGTGAGGGTTATAGTTACATAGGTAGA 58.269 37.037 0.00 0.00 0.00 2.59
141 142 9.531158 GTGAGGGTTATAGTTACATAGGTAGAT 57.469 37.037 0.00 0.00 0.00 1.98
144 145 9.987726 AGGGTTATAGTTACATAGGTAGATACC 57.012 37.037 0.43 0.43 46.82 2.73
160 161 7.960793 GGTAGATACCGTATCATGTTAAATGC 58.039 38.462 18.67 1.70 37.65 3.56
161 162 7.817962 GGTAGATACCGTATCATGTTAAATGCT 59.182 37.037 18.67 0.00 37.65 3.79
162 163 9.850628 GTAGATACCGTATCATGTTAAATGCTA 57.149 33.333 18.67 0.00 37.65 3.49
164 165 9.371136 AGATACCGTATCATGTTAAATGCTATG 57.629 33.333 18.67 0.00 37.65 2.23
165 166 6.241207 ACCGTATCATGTTAAATGCTATGC 57.759 37.500 0.00 0.00 0.00 3.14
166 167 5.997746 ACCGTATCATGTTAAATGCTATGCT 59.002 36.000 0.00 0.00 0.00 3.79
167 168 7.158697 ACCGTATCATGTTAAATGCTATGCTA 58.841 34.615 0.00 0.00 0.00 3.49
168 169 7.117812 ACCGTATCATGTTAAATGCTATGCTAC 59.882 37.037 0.00 0.00 0.00 3.58
169 170 7.331934 CCGTATCATGTTAAATGCTATGCTACT 59.668 37.037 0.00 0.00 0.00 2.57
170 171 8.712363 CGTATCATGTTAAATGCTATGCTACTT 58.288 33.333 0.00 0.00 0.00 2.24
173 174 8.279970 TCATGTTAAATGCTATGCTACTTTGT 57.720 30.769 0.00 0.00 0.00 2.83
174 175 9.389755 TCATGTTAAATGCTATGCTACTTTGTA 57.610 29.630 0.00 0.00 0.00 2.41
177 178 9.389755 TGTTAAATGCTATGCTACTTTGTATCA 57.610 29.630 0.00 0.00 0.00 2.15
180 181 5.929697 TGCTATGCTACTTTGTATCATGC 57.070 39.130 4.84 6.65 0.00 4.06
181 182 5.367302 TGCTATGCTACTTTGTATCATGCA 58.633 37.500 0.00 0.00 0.00 3.96
182 183 5.999600 TGCTATGCTACTTTGTATCATGCAT 59.000 36.000 0.00 0.00 41.60 3.96
183 184 6.072893 TGCTATGCTACTTTGTATCATGCATG 60.073 38.462 21.07 21.07 39.53 4.06
184 185 5.700722 ATGCTACTTTGTATCATGCATGG 57.299 39.130 25.97 10.76 38.10 3.66
185 186 3.316029 TGCTACTTTGTATCATGCATGGC 59.684 43.478 25.97 16.76 0.00 4.40
186 187 3.316029 GCTACTTTGTATCATGCATGGCA 59.684 43.478 25.97 18.54 44.86 4.92
187 188 4.202040 GCTACTTTGTATCATGCATGGCAA 60.202 41.667 25.97 22.51 43.62 4.52
188 189 5.508489 GCTACTTTGTATCATGCATGGCAAT 60.508 40.000 25.97 14.80 43.62 3.56
189 190 6.294120 GCTACTTTGTATCATGCATGGCAATA 60.294 38.462 25.97 13.80 43.62 1.90
190 191 6.080648 ACTTTGTATCATGCATGGCAATAG 57.919 37.500 25.97 22.83 43.62 1.73
191 192 5.829391 ACTTTGTATCATGCATGGCAATAGA 59.171 36.000 25.97 12.38 43.62 1.98
192 193 6.492429 ACTTTGTATCATGCATGGCAATAGAT 59.508 34.615 25.97 12.70 43.62 1.98
193 194 7.666804 ACTTTGTATCATGCATGGCAATAGATA 59.333 33.333 25.97 11.72 43.62 1.98
194 195 8.584063 TTTGTATCATGCATGGCAATAGATAT 57.416 30.769 25.97 11.31 43.62 1.63
195 196 7.562454 TGTATCATGCATGGCAATAGATATG 57.438 36.000 25.97 0.00 43.62 1.78
196 197 6.544564 TGTATCATGCATGGCAATAGATATGG 59.455 38.462 25.97 0.00 43.62 2.74
197 198 4.925836 TCATGCATGGCAATAGATATGGT 58.074 39.130 25.97 0.00 43.62 3.55
198 199 6.064735 TCATGCATGGCAATAGATATGGTA 57.935 37.500 25.97 0.00 43.62 3.25
199 200 6.483405 TCATGCATGGCAATAGATATGGTAA 58.517 36.000 25.97 0.00 43.62 2.85
200 201 7.120716 TCATGCATGGCAATAGATATGGTAAT 58.879 34.615 25.97 0.00 43.62 1.89
201 202 7.283807 TCATGCATGGCAATAGATATGGTAATC 59.716 37.037 25.97 0.00 43.62 1.75
202 203 6.724351 TGCATGGCAATAGATATGGTAATCT 58.276 36.000 0.00 0.00 36.47 2.40
203 204 7.860584 TGCATGGCAATAGATATGGTAATCTA 58.139 34.615 0.00 0.00 36.96 1.98
204 205 8.496916 TGCATGGCAATAGATATGGTAATCTAT 58.503 33.333 0.00 1.42 46.47 1.98
205 206 8.781196 GCATGGCAATAGATATGGTAATCTATG 58.219 37.037 7.04 4.12 44.68 2.23
241 242 8.998277 ATGATACTATACACTGTGAAGGTAGT 57.002 34.615 15.86 16.30 0.00 2.73
246 247 8.998277 ACTATACACTGTGAAGGTAGTATCAT 57.002 34.615 15.86 0.00 0.00 2.45
251 252 8.998277 ACACTGTGAAGGTAGTATCATATACT 57.002 34.615 15.86 5.04 0.00 2.12
301 302 9.697990 ATATGTTACTCCCTACTATAAGTAGCC 57.302 37.037 8.32 0.00 45.21 3.93
302 303 7.159201 TGTTACTCCCTACTATAAGTAGCCT 57.841 40.000 8.32 0.00 45.21 4.58
353 354 0.447801 GCTGCACTTACGTTGGATGG 59.552 55.000 0.00 0.00 0.00 3.51
398 399 2.214920 GGATTCCCCCGTCGGCTAT 61.215 63.158 5.50 0.00 0.00 2.97
425 426 6.764560 AGAGGTCGTTAATCTAGAGAAGTCTC 59.235 42.308 0.00 0.00 43.17 3.36
459 460 6.704310 ACCGTGTAATTACTCACCAACTAAT 58.296 36.000 16.33 0.00 0.00 1.73
548 556 5.116882 CCCATTTTACTCCACTAGTGTAGC 58.883 45.833 21.18 0.00 39.39 3.58
551 559 4.451629 TTTACTCCACTAGTGTAGCAGC 57.548 45.455 21.18 0.00 39.39 5.25
552 560 1.187087 ACTCCACTAGTGTAGCAGCC 58.813 55.000 21.18 0.00 36.93 4.85
598 613 0.544223 ATACACCAGCGTGGCCAATA 59.456 50.000 7.24 0.00 44.86 1.90
599 614 0.325272 TACACCAGCGTGGCCAATAA 59.675 50.000 7.24 0.00 44.86 1.40
618 633 1.299541 AGCCAACAAGTCAACGACTG 58.700 50.000 0.00 0.00 42.59 3.51
629 644 1.067142 TCAACGACTGTGTCCATAGGC 60.067 52.381 0.00 0.00 0.00 3.93
638 653 1.065928 GTCCATAGGCCACGAGACG 59.934 63.158 5.01 0.00 0.00 4.18
641 656 1.360551 CATAGGCCACGAGACGAGG 59.639 63.158 5.01 0.00 40.38 4.63
761 783 1.444836 TAAATTCGACAGGGCCAACG 58.555 50.000 6.18 8.56 0.00 4.10
817 869 1.471119 TAACTCCTACCCTGAGCACG 58.529 55.000 0.00 0.00 32.98 5.34
852 904 1.685224 GACCATTCCTCTGGCCACA 59.315 57.895 0.00 0.00 40.15 4.17
901 953 5.414360 CAACATCTGTCTAGCTGCTTTAGA 58.586 41.667 7.79 2.15 0.00 2.10
905 957 7.961351 ACATCTGTCTAGCTGCTTTAGATTAT 58.039 34.615 7.79 0.00 30.45 1.28
955 1012 3.084039 TGTCACTGCCCTTTCAATCATC 58.916 45.455 0.00 0.00 0.00 2.92
967 1024 5.335426 CCTTTCAATCATCTATCGGCATTGG 60.335 44.000 0.00 0.00 0.00 3.16
1121 1180 2.280628 GCCTACACATGCTCAAGGTAC 58.719 52.381 0.00 0.00 0.00 3.34
1124 1183 0.673644 ACACATGCTCAAGGTACGGC 60.674 55.000 0.00 0.00 0.00 5.68
1146 1205 1.486211 TAGCTAGTTCACTCCCCTGC 58.514 55.000 0.00 0.00 0.00 4.85
1155 1214 2.111384 TCACTCCCCTGCTTGATCTAC 58.889 52.381 0.00 0.00 0.00 2.59
1173 1236 5.128992 TCTACGCACAACATCTTACAGAA 57.871 39.130 0.00 0.00 0.00 3.02
1208 1305 4.397420 TGTTGTCAACTCTACCGGTAGTA 58.603 43.478 34.80 22.55 34.84 1.82
1246 1350 8.542497 TGAATGTAAGTTCATTGTGTAGGTAC 57.458 34.615 5.59 0.00 38.03 3.34
1396 1500 2.735772 GGAGATGGAAGCCCGAGCA 61.736 63.158 0.00 0.00 43.56 4.26
1430 1534 1.197721 CGCTTCGATGCAAGGAAGTTT 59.802 47.619 23.16 0.00 41.29 2.66
1466 1570 0.661483 GCAAGACACTTGCTTTCGCC 60.661 55.000 23.42 0.00 41.87 5.54
1540 1644 1.299541 GTGACCACACACTTCACTGG 58.700 55.000 0.00 0.00 45.32 4.00
1541 1645 0.463654 TGACCACACACTTCACTGGC 60.464 55.000 0.00 0.00 0.00 4.85
1551 1667 5.105716 ACACACTTCACTGGCATACTAGTAG 60.106 44.000 8.85 0.00 0.00 2.57
1667 2559 5.892160 CGTCTTATATTATGGGACGGAGA 57.108 43.478 17.59 0.00 43.69 3.71
1668 2560 6.263516 CGTCTTATATTATGGGACGGAGAA 57.736 41.667 17.59 0.00 43.69 2.87
1675 2567 4.996788 TTATGGGACGGAGAAAGTAGAC 57.003 45.455 0.00 0.00 0.00 2.59
1699 2591 6.122782 CGATTGTTCGTGCTTATCAACTATG 58.877 40.000 0.00 0.00 40.53 2.23
1763 2655 7.849804 TTTTCTAAGGATGTCACATCTAAGC 57.150 36.000 17.46 0.73 0.00 3.09
1764 2656 6.798427 TTCTAAGGATGTCACATCTAAGCT 57.202 37.500 17.46 3.19 0.00 3.74
1765 2657 6.798427 TCTAAGGATGTCACATCTAAGCTT 57.202 37.500 17.46 13.56 0.00 3.74
1766 2658 6.810911 TCTAAGGATGTCACATCTAAGCTTC 58.189 40.000 17.46 0.00 0.00 3.86
1767 2659 4.414337 AGGATGTCACATCTAAGCTTCC 57.586 45.455 17.46 0.00 0.00 3.46
1768 2660 3.776969 AGGATGTCACATCTAAGCTTCCA 59.223 43.478 17.46 0.00 0.00 3.53
1769 2661 3.873952 GGATGTCACATCTAAGCTTCCAC 59.126 47.826 17.46 0.00 0.00 4.02
1770 2662 4.507710 GATGTCACATCTAAGCTTCCACA 58.492 43.478 10.81 0.00 0.00 4.17
1771 2663 4.350368 TGTCACATCTAAGCTTCCACAA 57.650 40.909 0.00 0.00 0.00 3.33
1772 2664 4.713553 TGTCACATCTAAGCTTCCACAAA 58.286 39.130 0.00 0.00 0.00 2.83
1773 2665 5.316167 TGTCACATCTAAGCTTCCACAAAT 58.684 37.500 0.00 0.00 0.00 2.32
1774 2666 6.472016 TGTCACATCTAAGCTTCCACAAATA 58.528 36.000 0.00 0.00 0.00 1.40
1775 2667 6.939730 TGTCACATCTAAGCTTCCACAAATAA 59.060 34.615 0.00 0.00 0.00 1.40
1776 2668 7.094805 TGTCACATCTAAGCTTCCACAAATAAC 60.095 37.037 0.00 0.00 0.00 1.89
1777 2669 6.092122 TCACATCTAAGCTTCCACAAATAACG 59.908 38.462 0.00 0.00 0.00 3.18
1778 2670 5.938125 ACATCTAAGCTTCCACAAATAACGT 59.062 36.000 0.00 0.00 0.00 3.99
1779 2671 7.064134 CACATCTAAGCTTCCACAAATAACGTA 59.936 37.037 0.00 0.00 0.00 3.57
1780 2672 7.277981 ACATCTAAGCTTCCACAAATAACGTAG 59.722 37.037 0.00 0.00 0.00 3.51
1781 2673 4.680171 AAGCTTCCACAAATAACGTAGC 57.320 40.909 0.00 0.00 0.00 3.58
1782 2674 3.670625 AGCTTCCACAAATAACGTAGCA 58.329 40.909 0.00 0.00 0.00 3.49
1783 2675 3.435671 AGCTTCCACAAATAACGTAGCAC 59.564 43.478 0.00 0.00 0.00 4.40
1784 2676 3.425758 GCTTCCACAAATAACGTAGCACC 60.426 47.826 0.00 0.00 0.00 5.01
1785 2677 3.404224 TCCACAAATAACGTAGCACCA 57.596 42.857 0.00 0.00 0.00 4.17
1786 2678 3.741249 TCCACAAATAACGTAGCACCAA 58.259 40.909 0.00 0.00 0.00 3.67
1787 2679 4.135306 TCCACAAATAACGTAGCACCAAA 58.865 39.130 0.00 0.00 0.00 3.28
1788 2680 4.214545 TCCACAAATAACGTAGCACCAAAG 59.785 41.667 0.00 0.00 0.00 2.77
1789 2681 4.214545 CCACAAATAACGTAGCACCAAAGA 59.785 41.667 0.00 0.00 0.00 2.52
1790 2682 5.278071 CCACAAATAACGTAGCACCAAAGAA 60.278 40.000 0.00 0.00 0.00 2.52
1791 2683 5.623673 CACAAATAACGTAGCACCAAAGAAC 59.376 40.000 0.00 0.00 0.00 3.01
1792 2684 5.297278 ACAAATAACGTAGCACCAAAGAACA 59.703 36.000 0.00 0.00 0.00 3.18
1793 2685 6.183360 ACAAATAACGTAGCACCAAAGAACAA 60.183 34.615 0.00 0.00 0.00 2.83
1794 2686 6.380095 AATAACGTAGCACCAAAGAACAAA 57.620 33.333 0.00 0.00 0.00 2.83
1795 2687 4.911514 AACGTAGCACCAAAGAACAAAT 57.088 36.364 0.00 0.00 0.00 2.32
1796 2688 7.675962 ATAACGTAGCACCAAAGAACAAATA 57.324 32.000 0.00 0.00 0.00 1.40
1797 2689 6.380095 AACGTAGCACCAAAGAACAAATAA 57.620 33.333 0.00 0.00 0.00 1.40
1798 2690 6.380095 ACGTAGCACCAAAGAACAAATAAA 57.620 33.333 0.00 0.00 0.00 1.40
1799 2691 6.797454 ACGTAGCACCAAAGAACAAATAAAA 58.203 32.000 0.00 0.00 0.00 1.52
1800 2692 7.259161 ACGTAGCACCAAAGAACAAATAAAAA 58.741 30.769 0.00 0.00 0.00 1.94
1801 2693 7.434013 ACGTAGCACCAAAGAACAAATAAAAAG 59.566 33.333 0.00 0.00 0.00 2.27
1802 2694 6.603237 AGCACCAAAGAACAAATAAAAAGC 57.397 33.333 0.00 0.00 0.00 3.51
1803 2695 6.348498 AGCACCAAAGAACAAATAAAAAGCT 58.652 32.000 0.00 0.00 0.00 3.74
1804 2696 6.258507 AGCACCAAAGAACAAATAAAAAGCTG 59.741 34.615 0.00 0.00 0.00 4.24
1805 2697 6.511605 GCACCAAAGAACAAATAAAAAGCTGG 60.512 38.462 0.00 0.00 0.00 4.85
1806 2698 6.018016 CACCAAAGAACAAATAAAAAGCTGGG 60.018 38.462 0.00 0.00 0.00 4.45
1807 2699 6.126911 ACCAAAGAACAAATAAAAAGCTGGGA 60.127 34.615 0.00 0.00 0.00 4.37
1808 2700 6.202762 CCAAAGAACAAATAAAAAGCTGGGAC 59.797 38.462 0.00 0.00 0.00 4.46
1809 2701 6.478512 AAGAACAAATAAAAAGCTGGGACA 57.521 33.333 0.00 0.00 0.00 4.02
1810 2702 6.478512 AGAACAAATAAAAAGCTGGGACAA 57.521 33.333 0.00 0.00 38.70 3.18
1811 2703 6.883744 AGAACAAATAAAAAGCTGGGACAAA 58.116 32.000 0.00 0.00 38.70 2.83
1812 2704 7.334858 AGAACAAATAAAAAGCTGGGACAAAA 58.665 30.769 0.00 0.00 38.70 2.44
1813 2705 7.826744 AGAACAAATAAAAAGCTGGGACAAAAA 59.173 29.630 0.00 0.00 38.70 1.94
1832 2724 3.951775 AAAAAGCAGACCACAAACACA 57.048 38.095 0.00 0.00 0.00 3.72
1833 2725 3.951775 AAAAGCAGACCACAAACACAA 57.048 38.095 0.00 0.00 0.00 3.33
1834 2726 4.470334 AAAAGCAGACCACAAACACAAT 57.530 36.364 0.00 0.00 0.00 2.71
1835 2727 3.441496 AAGCAGACCACAAACACAATG 57.559 42.857 0.00 0.00 0.00 2.82
1836 2728 2.378038 AGCAGACCACAAACACAATGT 58.622 42.857 0.00 0.00 0.00 2.71
1837 2729 2.099592 AGCAGACCACAAACACAATGTG 59.900 45.455 12.40 12.40 46.05 3.21
1839 2731 3.694734 CAGACCACAAACACAATGTGTC 58.305 45.455 20.11 5.28 46.79 3.67
1840 2732 3.128415 CAGACCACAAACACAATGTGTCA 59.872 43.478 20.11 0.00 46.79 3.58
1841 2733 3.128589 AGACCACAAACACAATGTGTCAC 59.871 43.478 20.11 6.47 46.79 3.67
1842 2734 2.822561 ACCACAAACACAATGTGTCACA 59.177 40.909 20.11 8.40 46.79 3.58
1843 2735 3.446873 ACCACAAACACAATGTGTCACAT 59.553 39.130 20.11 12.87 46.79 3.21
1844 2736 4.043750 CCACAAACACAATGTGTCACATC 58.956 43.478 20.11 0.00 46.79 3.06
1845 2737 4.202040 CCACAAACACAATGTGTCACATCT 60.202 41.667 20.11 6.84 46.79 2.90
1846 2738 5.008514 CCACAAACACAATGTGTCACATCTA 59.991 40.000 20.11 0.00 46.79 1.98
1847 2739 6.138088 CACAAACACAATGTGTCACATCTAG 58.862 40.000 20.11 13.60 46.79 2.43
1848 2740 6.018016 CACAAACACAATGTGTCACATCTAGA 60.018 38.462 20.11 0.00 46.79 2.43
1849 2741 6.712095 ACAAACACAATGTGTCACATCTAGAT 59.288 34.615 20.11 0.00 46.79 1.98
1850 2742 6.732531 AACACAATGTGTCACATCTAGATG 57.267 37.500 27.63 27.63 46.79 2.90
1851 2743 5.798132 ACACAATGTGTCACATCTAGATGT 58.202 37.500 28.95 28.95 43.92 3.06
1854 2746 8.479465 ACACAATGTGTCACATCTAGATGTGTC 61.479 40.741 43.09 39.51 45.12 3.67
1866 2758 6.726490 TCTAGATGTGTCCTATACAAACCC 57.274 41.667 0.00 0.00 40.63 4.11
1867 2759 4.772886 AGATGTGTCCTATACAAACCCC 57.227 45.455 0.00 0.00 40.63 4.95
1877 2769 8.395605 TGTCCTATACAAACCCCTAAGAAAATT 58.604 33.333 0.00 0.00 34.29 1.82
1901 2793 4.794169 CAGTCCTTTATTTTTCACGTGGG 58.206 43.478 17.00 5.51 0.00 4.61
1935 2833 9.301897 GGGATAAAGTCAAAATAAGCCTATCAT 57.698 33.333 0.00 0.00 0.00 2.45
1964 2862 6.054860 AGCAGGATAGTTATTGTGTTGAGT 57.945 37.500 0.00 0.00 0.00 3.41
2007 2905 6.525578 AAGTAATTTCCCGAATTCCCTTTC 57.474 37.500 0.00 0.00 38.80 2.62
2011 2913 6.433847 AATTTCCCGAATTCCCTTTCTTTT 57.566 33.333 0.00 0.00 32.49 2.27
2016 2918 6.014012 TCCCGAATTCCCTTTCTTTTAACAT 58.986 36.000 0.00 0.00 0.00 2.71
2018 2920 7.338449 TCCCGAATTCCCTTTCTTTTAACATAG 59.662 37.037 0.00 0.00 0.00 2.23
2021 2923 9.983804 CGAATTCCCTTTCTTTTAACATAGTAC 57.016 33.333 0.00 0.00 0.00 2.73
2027 2929 7.013529 CCTTTCTTTTAACATAGTACACACGC 58.986 38.462 0.00 0.00 0.00 5.34
2029 2931 6.456447 TCTTTTAACATAGTACACACGCAC 57.544 37.500 0.00 0.00 0.00 5.34
2030 2932 4.889519 TTTAACATAGTACACACGCACG 57.110 40.909 0.00 0.00 0.00 5.34
2032 2934 0.734942 ACATAGTACACACGCACGCC 60.735 55.000 0.00 0.00 0.00 5.68
2035 2937 0.959867 TAGTACACACGCACGCCCTA 60.960 55.000 0.00 0.00 0.00 3.53
2036 2938 1.153706 GTACACACGCACGCCCTAT 60.154 57.895 0.00 0.00 0.00 2.57
2037 2939 1.140161 TACACACGCACGCCCTATC 59.860 57.895 0.00 0.00 0.00 2.08
2038 2940 1.317431 TACACACGCACGCCCTATCT 61.317 55.000 0.00 0.00 0.00 1.98
2040 2942 1.153628 ACACGCACGCCCTATCTTC 60.154 57.895 0.00 0.00 0.00 2.87
2041 2943 1.153647 CACGCACGCCCTATCTTCA 60.154 57.895 0.00 0.00 0.00 3.02
2042 2944 0.530650 CACGCACGCCCTATCTTCAT 60.531 55.000 0.00 0.00 0.00 2.57
2043 2945 0.530650 ACGCACGCCCTATCTTCATG 60.531 55.000 0.00 0.00 0.00 3.07
2044 2946 0.249447 CGCACGCCCTATCTTCATGA 60.249 55.000 0.00 0.00 0.00 3.07
2045 2947 1.506493 GCACGCCCTATCTTCATGAG 58.494 55.000 0.00 0.00 0.00 2.90
2046 2948 1.506493 CACGCCCTATCTTCATGAGC 58.494 55.000 0.00 0.00 0.00 4.26
2047 2949 1.123077 ACGCCCTATCTTCATGAGCA 58.877 50.000 0.00 0.00 0.00 4.26
2049 2951 2.141517 CGCCCTATCTTCATGAGCAAG 58.858 52.381 0.00 0.00 0.00 4.01
2050 2952 2.484417 CGCCCTATCTTCATGAGCAAGT 60.484 50.000 0.00 0.00 0.00 3.16
2052 2954 3.737850 CCCTATCTTCATGAGCAAGTCC 58.262 50.000 0.00 0.00 0.00 3.85
2053 2955 3.388308 CCTATCTTCATGAGCAAGTCCG 58.612 50.000 0.00 0.00 0.00 4.79
2054 2956 3.068732 CCTATCTTCATGAGCAAGTCCGA 59.931 47.826 0.00 0.00 0.00 4.55
2055 2957 2.662006 TCTTCATGAGCAAGTCCGAG 57.338 50.000 0.00 0.00 0.00 4.63
2057 2959 2.165234 TCTTCATGAGCAAGTCCGAGAG 59.835 50.000 0.00 0.00 0.00 3.20
2058 2960 1.839424 TCATGAGCAAGTCCGAGAGA 58.161 50.000 0.00 0.00 0.00 3.10
2067 2969 2.783228 GTCCGAGAGACCGAGTCAT 58.217 57.895 6.78 0.00 39.84 3.06
2073 2975 2.286713 CGAGAGACCGAGTCATCACATC 60.287 54.545 6.78 0.00 34.60 3.06
2079 2981 3.790091 ACCGAGTCATCACATCATCTTG 58.210 45.455 0.00 0.00 0.00 3.02
2088 2990 6.537660 GTCATCACATCATCTTGAGATTGACA 59.462 38.462 11.81 0.00 32.29 3.58
2100 3002 4.129380 TGAGATTGACAAAGTCACCACAG 58.871 43.478 0.00 0.00 42.60 3.66
2104 3006 2.117941 GACAAAGTCACCACAGGCGC 62.118 60.000 0.00 0.00 32.09 6.53
2113 3015 2.813908 CACAGGCGCCTCCGTAAC 60.814 66.667 30.29 0.00 40.77 2.50
2117 3019 4.217159 GGCGCCTCCGTAACCGAT 62.217 66.667 22.15 0.00 36.67 4.18
2131 3033 0.531200 ACCGATGGGAACGTCTTCTC 59.469 55.000 0.00 0.00 44.51 2.87
2141 3043 2.080286 ACGTCTTCTCCCATTGAACG 57.920 50.000 0.00 0.00 0.00 3.95
2142 3044 0.721718 CGTCTTCTCCCATTGAACGC 59.278 55.000 0.00 0.00 0.00 4.84
2148 3050 0.374758 CTCCCATTGAACGCACATCG 59.625 55.000 0.00 0.00 45.38 3.84
2149 3051 1.024046 TCCCATTGAACGCACATCGG 61.024 55.000 0.00 0.00 43.86 4.18
2150 3052 1.226379 CCATTGAACGCACATCGGC 60.226 57.895 0.00 0.00 43.86 5.54
2161 3063 0.378257 CACATCGGCGGAAAGATTGG 59.622 55.000 7.21 0.00 0.00 3.16
2169 3071 4.274950 TCGGCGGAAAGATTGGAATTAATC 59.725 41.667 7.21 0.00 37.34 1.75
2186 3089 2.477845 ATCCCAAAAATGCAAGCACC 57.522 45.000 0.00 0.00 0.00 5.01
2226 3129 0.988832 AATCCTCGTGGGCTGGTTTA 59.011 50.000 3.23 0.00 34.39 2.01
2235 3138 3.748645 TGGGCTGGTTTAACCACATAT 57.251 42.857 13.44 0.00 44.79 1.78
2250 3153 9.816787 TTAACCACATATAAAGTTCCCTTTTCT 57.183 29.630 0.00 0.00 41.18 2.52
2254 3157 5.293569 ACATATAAAGTTCCCTTTTCTCGCG 59.706 40.000 0.00 0.00 41.18 5.87
2340 3244 0.322456 TGGCAGTCCCAATGCACTAC 60.322 55.000 0.00 0.00 45.68 2.73
2352 3256 6.000219 CCCAATGCACTACATCTAAAGCTAT 59.000 40.000 0.00 0.00 38.34 2.97
2353 3257 7.016170 TCCCAATGCACTACATCTAAAGCTATA 59.984 37.037 0.00 0.00 38.34 1.31
2354 3258 7.118390 CCCAATGCACTACATCTAAAGCTATAC 59.882 40.741 0.00 0.00 38.34 1.47
2355 3259 7.875041 CCAATGCACTACATCTAAAGCTATACT 59.125 37.037 0.00 0.00 38.34 2.12
2356 3260 9.914131 CAATGCACTACATCTAAAGCTATACTA 57.086 33.333 0.00 0.00 38.34 1.82
2554 3569 6.371548 TGCACAAGTGTATAAATCTTCAGGAC 59.628 38.462 1.79 0.00 0.00 3.85
2580 3595 7.521423 CGAAATACTTTGAAATGAGGGTTGTGA 60.521 37.037 0.00 0.00 0.00 3.58
2631 3646 7.727634 ACACATGATACTATTCATCCTCTCAGA 59.272 37.037 0.00 0.00 34.09 3.27
2632 3647 8.028354 CACATGATACTATTCATCCTCTCAGAC 58.972 40.741 0.00 0.00 34.09 3.51
2704 3719 6.577055 CCTGAAATTTTACACACGTACACATG 59.423 38.462 0.00 0.00 0.00 3.21
2727 3742 8.514594 CATGACATCCTTGTTTACTTGTACAAT 58.485 33.333 9.13 2.49 35.79 2.71
2729 3744 7.095397 TGACATCCTTGTTTACTTGTACAATCG 60.095 37.037 9.13 0.68 35.79 3.34
2795 3810 2.900547 AAAAATCGGCCTCCATGGG 58.099 52.632 13.02 2.26 36.00 4.00
2813 3828 4.667420 GGTCGAGAGCCAAAACGA 57.333 55.556 0.00 0.00 0.00 3.85
2888 3905 7.194607 TGTGAGAGAAAATTTGTGAGATGTC 57.805 36.000 0.00 0.00 0.00 3.06
2909 3926 5.415701 TGTCTTGAATTTGGTGCTAAGATCC 59.584 40.000 0.00 0.00 0.00 3.36
2915 3932 6.716628 TGAATTTGGTGCTAAGATCCATATCC 59.283 38.462 0.00 0.00 31.98 2.59
2938 3955 8.723942 TCCAGATTAAGATAAAGTTGCTCTTC 57.276 34.615 4.02 0.00 35.02 2.87
3024 4041 3.869065 CGTTGGAACTGCCCTAAGAATA 58.131 45.455 0.00 0.00 34.97 1.75
3139 4165 6.642683 AAACCTTGACTTACGATTATGACG 57.357 37.500 0.00 0.00 0.00 4.35
3177 4203 8.011290 AGGTAAGAGGATAGTTTAATCTAGCCA 58.989 37.037 23.35 6.20 45.57 4.75
3224 4250 9.872721 TTGACCATACAAATACGATAAGTACAA 57.127 29.630 0.00 0.00 38.29 2.41
3302 4338 6.101881 TCTCTCTCTCTCTCTCTCTCTCTCTA 59.898 46.154 0.00 0.00 0.00 2.43
3318 4354 8.234136 TCTCTCTCTACAAACACAAGAGTTTA 57.766 34.615 0.00 0.00 39.55 2.01
3325 4361 6.243216 ACAAACACAAGAGTTTACCCTCTA 57.757 37.500 0.00 0.00 40.93 2.43
3432 4469 6.936335 TGTGTATATGCATCTTGAAGTATGGG 59.064 38.462 0.19 0.00 0.00 4.00
3433 4470 6.936900 GTGTATATGCATCTTGAAGTATGGGT 59.063 38.462 0.19 0.00 0.00 4.51
3470 4508 2.627515 ATGACATCCCCACGATCTTG 57.372 50.000 0.00 0.00 0.00 3.02
3719 4762 7.798596 ATCATTTGCTTAGTAGAATGTCCAG 57.201 36.000 0.00 0.00 32.70 3.86
3763 4811 5.470777 ACGACATCCCACGAATTTAGAAAAA 59.529 36.000 0.00 0.00 0.00 1.94
3804 4852 3.889196 TCACATCAACGCCACTTAAAC 57.111 42.857 0.00 0.00 0.00 2.01
4095 5165 3.802948 AGTGAAAGTCCATACTAGCCG 57.197 47.619 0.00 0.00 33.75 5.52
4267 5345 4.039124 TGTTGCTTCAAATTTCCTCCTTCC 59.961 41.667 0.00 0.00 0.00 3.46
4268 5346 3.843422 TGCTTCAAATTTCCTCCTTCCA 58.157 40.909 0.00 0.00 0.00 3.53
4283 5361 6.156949 TCCTCCTTCCATATGCCATACTTATC 59.843 42.308 0.00 0.00 0.00 1.75
4380 5505 9.780186 AGCTTATTTGTTAGAGTGGGATAATAC 57.220 33.333 0.00 0.00 0.00 1.89
4689 5818 4.042062 CCTATATCCTGAATGGCAAGGTCA 59.958 45.833 3.74 1.71 35.26 4.02
4982 6111 7.371159 CCTTCAAAAAGGTAGTCAAGAATTCC 58.629 38.462 0.65 0.00 46.10 3.01
5022 6151 4.823442 AGTTGAAACTGATGAGCATCACAA 59.177 37.500 8.99 9.01 43.32 3.33
5070 6199 2.411628 TCCCGGACCATACACAAATG 57.588 50.000 0.73 0.00 0.00 2.32
5190 6319 6.161855 ACGAGATGCTATTTGAGACCATAA 57.838 37.500 0.00 0.00 0.00 1.90
5270 6399 0.390340 CACCTGACCTGATGTGTCCG 60.390 60.000 0.00 0.00 31.60 4.79
5287 6416 3.187700 GTCCGATAGCGTTTGAGACAAT 58.812 45.455 0.00 0.00 35.23 2.71
5296 6425 3.181516 GCGTTTGAGACAATGTCCATCTC 60.182 47.826 10.12 1.59 39.50 2.75
5328 6457 9.502091 TCTTTTACCGCAAATAATGATAGCTAT 57.498 29.630 5.76 5.76 0.00 2.97
5336 6465 7.307632 CGCAAATAATGATAGCTATATCCCTGC 60.308 40.741 6.13 8.96 37.58 4.85
5354 6483 3.499157 CCTGCGGAGTGTATAGTAGAGAC 59.501 52.174 2.36 0.00 0.00 3.36
5372 6501 5.507637 AGAGACTCTTTTGGCATGATTGAT 58.492 37.500 0.00 0.00 0.00 2.57
5402 6532 7.096477 GCGATTTAGATTTTCCAATTCAATCCG 60.096 37.037 0.00 0.00 0.00 4.18
5475 6605 5.345741 ACTTTTTGCATGACACGATTATTGC 59.654 36.000 0.00 0.00 0.00 3.56
5539 6669 2.009774 GAACATCCAGTGGAACCATCG 58.990 52.381 17.71 3.40 37.80 3.84
5540 6670 0.253044 ACATCCAGTGGAACCATCGG 59.747 55.000 17.71 2.74 37.80 4.18
5575 6705 5.065090 CGGTCATGCATGAGAATGAAACTAA 59.935 40.000 29.38 0.33 41.50 2.24
5643 6773 4.948608 TTTGTCGTCAAAACTAGCACAA 57.051 36.364 5.33 0.00 40.08 3.33
5644 6774 3.936902 TGTCGTCAAAACTAGCACAAC 57.063 42.857 0.00 0.00 0.00 3.32
5683 6813 5.301045 CGAGGGTATCACCTTTAGTATGTCA 59.699 44.000 0.00 0.00 42.10 3.58
5896 7031 0.611896 ACAGTTAGGCATGGGGTTGC 60.612 55.000 0.00 0.00 42.01 4.17
5937 7072 3.754965 ACTTGAATCTTGTAGGCTTGCA 58.245 40.909 0.00 0.00 0.00 4.08
6063 7198 4.091075 CGGATCTCATATTTGCTGATGACG 59.909 45.833 0.00 0.00 0.00 4.35
6069 7204 5.846203 TCATATTTGCTGATGACGATCTCA 58.154 37.500 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.068226 ACAGGTCATATTAACCCAATTAACTGC 59.932 37.037 1.16 0.00 35.57 4.40
1 2 8.405531 CACAGGTCATATTAACCCAATTAACTG 58.594 37.037 1.16 0.00 35.57 3.16
2 3 8.333235 TCACAGGTCATATTAACCCAATTAACT 58.667 33.333 1.16 0.00 35.57 2.24
3 4 8.514330 TCACAGGTCATATTAACCCAATTAAC 57.486 34.615 1.16 0.00 35.57 2.01
4 5 7.777910 CCTCACAGGTCATATTAACCCAATTAA 59.222 37.037 1.16 0.00 37.52 1.40
5 6 7.287061 CCTCACAGGTCATATTAACCCAATTA 58.713 38.462 1.16 0.00 37.52 1.40
6 7 6.129179 CCTCACAGGTCATATTAACCCAATT 58.871 40.000 1.16 0.00 37.52 2.32
7 8 5.694995 CCTCACAGGTCATATTAACCCAAT 58.305 41.667 1.16 0.00 37.52 3.16
8 9 4.627741 GCCTCACAGGTCATATTAACCCAA 60.628 45.833 1.16 0.00 37.80 4.12
9 10 3.118038 GCCTCACAGGTCATATTAACCCA 60.118 47.826 1.16 0.00 37.80 4.51
10 11 3.136626 AGCCTCACAGGTCATATTAACCC 59.863 47.826 1.16 0.00 37.80 4.11
11 12 4.423625 AGCCTCACAGGTCATATTAACC 57.576 45.455 0.00 0.00 37.80 2.85
12 13 7.217200 TGATTAGCCTCACAGGTCATATTAAC 58.783 38.462 0.00 0.00 37.80 2.01
13 14 7.373617 TGATTAGCCTCACAGGTCATATTAA 57.626 36.000 0.00 0.00 37.80 1.40
14 15 6.994421 TGATTAGCCTCACAGGTCATATTA 57.006 37.500 0.00 0.00 37.80 0.98
15 16 5.894298 TGATTAGCCTCACAGGTCATATT 57.106 39.130 0.00 0.00 37.80 1.28
16 17 6.728164 ACTATGATTAGCCTCACAGGTCATAT 59.272 38.462 0.00 0.00 37.80 1.78
17 18 6.015095 CACTATGATTAGCCTCACAGGTCATA 60.015 42.308 0.00 0.00 37.80 2.15
18 19 4.904251 ACTATGATTAGCCTCACAGGTCAT 59.096 41.667 0.00 0.00 37.80 3.06
19 20 4.100035 CACTATGATTAGCCTCACAGGTCA 59.900 45.833 0.00 0.00 37.80 4.02
20 21 4.502259 CCACTATGATTAGCCTCACAGGTC 60.502 50.000 0.00 0.00 37.80 3.85
21 22 3.389329 CCACTATGATTAGCCTCACAGGT 59.611 47.826 0.00 0.00 37.80 4.00
22 23 3.244353 CCCACTATGATTAGCCTCACAGG 60.244 52.174 0.00 0.00 38.80 4.00
23 24 3.244353 CCCCACTATGATTAGCCTCACAG 60.244 52.174 0.00 0.00 0.00 3.66
24 25 2.705658 CCCCACTATGATTAGCCTCACA 59.294 50.000 0.00 0.00 0.00 3.58
25 26 2.972713 TCCCCACTATGATTAGCCTCAC 59.027 50.000 0.00 0.00 0.00 3.51
26 27 3.344535 TCCCCACTATGATTAGCCTCA 57.655 47.619 0.00 0.00 0.00 3.86
27 28 5.248477 TGTTATCCCCACTATGATTAGCCTC 59.752 44.000 0.00 0.00 0.00 4.70
28 29 5.162637 TGTTATCCCCACTATGATTAGCCT 58.837 41.667 0.00 0.00 0.00 4.58
29 30 5.499004 TGTTATCCCCACTATGATTAGCC 57.501 43.478 0.00 0.00 0.00 3.93
30 31 7.553044 GGTTATGTTATCCCCACTATGATTAGC 59.447 40.741 0.00 0.00 0.00 3.09
31 32 7.764443 CGGTTATGTTATCCCCACTATGATTAG 59.236 40.741 0.00 0.00 0.00 1.73
32 33 7.310796 CCGGTTATGTTATCCCCACTATGATTA 60.311 40.741 0.00 0.00 0.00 1.75
33 34 6.472887 CGGTTATGTTATCCCCACTATGATT 58.527 40.000 0.00 0.00 0.00 2.57
34 35 5.045869 CCGGTTATGTTATCCCCACTATGAT 60.046 44.000 0.00 0.00 0.00 2.45
35 36 4.285003 CCGGTTATGTTATCCCCACTATGA 59.715 45.833 0.00 0.00 0.00 2.15
36 37 4.041198 ACCGGTTATGTTATCCCCACTATG 59.959 45.833 0.00 0.00 0.00 2.23
37 38 4.237018 ACCGGTTATGTTATCCCCACTAT 58.763 43.478 0.00 0.00 0.00 2.12
38 39 3.656496 ACCGGTTATGTTATCCCCACTA 58.344 45.455 0.00 0.00 0.00 2.74
39 40 2.484602 ACCGGTTATGTTATCCCCACT 58.515 47.619 0.00 0.00 0.00 4.00
40 41 4.129380 GTTACCGGTTATGTTATCCCCAC 58.871 47.826 15.04 0.00 0.00 4.61
41 42 3.779183 TGTTACCGGTTATGTTATCCCCA 59.221 43.478 15.04 0.00 0.00 4.96
42 43 4.420522 TGTTACCGGTTATGTTATCCCC 57.579 45.455 15.04 0.00 0.00 4.81
43 44 4.214758 GCATGTTACCGGTTATGTTATCCC 59.785 45.833 15.04 0.00 0.00 3.85
44 45 4.817464 TGCATGTTACCGGTTATGTTATCC 59.183 41.667 15.04 3.46 0.00 2.59
45 46 5.994887 TGCATGTTACCGGTTATGTTATC 57.005 39.130 15.04 3.80 0.00 1.75
46 47 6.952773 ATTGCATGTTACCGGTTATGTTAT 57.047 33.333 15.04 10.09 0.00 1.89
47 48 6.404844 CCAATTGCATGTTACCGGTTATGTTA 60.405 38.462 15.04 8.33 0.00 2.41
48 49 5.406649 CAATTGCATGTTACCGGTTATGTT 58.593 37.500 15.04 3.80 0.00 2.71
49 50 4.142271 CCAATTGCATGTTACCGGTTATGT 60.142 41.667 15.04 0.00 0.00 2.29
50 51 4.358851 CCAATTGCATGTTACCGGTTATG 58.641 43.478 15.04 16.46 0.00 1.90
51 52 3.383185 CCCAATTGCATGTTACCGGTTAT 59.617 43.478 15.04 2.09 0.00 1.89
52 53 2.755655 CCCAATTGCATGTTACCGGTTA 59.244 45.455 15.04 0.00 0.00 2.85
53 54 1.548269 CCCAATTGCATGTTACCGGTT 59.452 47.619 15.04 0.00 0.00 4.44
54 55 1.181786 CCCAATTGCATGTTACCGGT 58.818 50.000 13.98 13.98 0.00 5.28
55 56 1.134175 GTCCCAATTGCATGTTACCGG 59.866 52.381 0.00 0.00 0.00 5.28
56 57 2.091541 AGTCCCAATTGCATGTTACCG 58.908 47.619 0.00 0.00 0.00 4.02
57 58 3.066760 GCTAGTCCCAATTGCATGTTACC 59.933 47.826 0.00 0.00 0.00 2.85
58 59 3.694072 TGCTAGTCCCAATTGCATGTTAC 59.306 43.478 0.00 0.00 0.00 2.50
59 60 3.961849 TGCTAGTCCCAATTGCATGTTA 58.038 40.909 0.00 0.00 0.00 2.41
60 61 2.806434 TGCTAGTCCCAATTGCATGTT 58.194 42.857 0.00 0.00 0.00 2.71
61 62 2.512692 TGCTAGTCCCAATTGCATGT 57.487 45.000 0.00 0.00 0.00 3.21
62 63 3.056678 TGTTTGCTAGTCCCAATTGCATG 60.057 43.478 0.00 0.00 33.50 4.06
63 64 3.164268 TGTTTGCTAGTCCCAATTGCAT 58.836 40.909 0.00 0.00 33.50 3.96
64 65 2.591923 TGTTTGCTAGTCCCAATTGCA 58.408 42.857 0.00 0.00 0.00 4.08
65 66 3.514645 CATGTTTGCTAGTCCCAATTGC 58.485 45.455 0.00 0.00 0.00 3.56
66 67 3.514645 GCATGTTTGCTAGTCCCAATTG 58.485 45.455 0.00 0.00 45.77 2.32
67 68 3.874392 GCATGTTTGCTAGTCCCAATT 57.126 42.857 0.00 0.00 45.77 2.32
76 77 7.559253 GTGTGCCACATAAGCATGTTTGCTA 62.559 44.000 0.00 0.00 45.30 3.49
77 78 6.868736 GTGTGCCACATAAGCATGTTTGCT 62.869 45.833 0.00 0.00 46.69 3.91
78 79 4.703027 GTGTGCCACATAAGCATGTTTGC 61.703 47.826 0.00 0.00 42.98 3.68
79 80 2.988493 GTGTGCCACATAAGCATGTTTG 59.012 45.455 0.00 0.00 42.98 2.93
80 81 2.627221 TGTGTGCCACATAAGCATGTTT 59.373 40.909 0.00 0.00 42.98 2.83
81 82 2.237643 TGTGTGCCACATAAGCATGTT 58.762 42.857 0.00 0.00 42.98 2.71
82 83 1.908344 TGTGTGCCACATAAGCATGT 58.092 45.000 0.00 0.00 46.58 3.21
83 84 3.513680 ATTGTGTGCCACATAAGCATG 57.486 42.857 12.58 0.00 44.16 4.06
84 85 5.657826 TTAATTGTGTGCCACATAAGCAT 57.342 34.783 12.58 4.64 44.16 3.79
85 86 5.459536 TTTAATTGTGTGCCACATAAGCA 57.540 34.783 12.58 0.00 44.16 3.91
86 87 7.973388 TCTTATTTAATTGTGTGCCACATAAGC 59.027 33.333 12.58 0.00 44.16 3.09
87 88 9.507280 CTCTTATTTAATTGTGTGCCACATAAG 57.493 33.333 12.58 8.32 44.16 1.73
88 89 9.237187 TCTCTTATTTAATTGTGTGCCACATAA 57.763 29.630 9.52 9.52 44.16 1.90
89 90 8.800370 TCTCTTATTTAATTGTGTGCCACATA 57.200 30.769 0.00 0.00 44.16 2.29
90 91 7.394359 ACTCTCTTATTTAATTGTGTGCCACAT 59.606 33.333 0.00 0.00 44.16 3.21
91 92 6.714810 ACTCTCTTATTTAATTGTGTGCCACA 59.285 34.615 0.00 0.00 43.02 4.17
92 93 7.023575 CACTCTCTTATTTAATTGTGTGCCAC 58.976 38.462 0.00 0.00 34.56 5.01
93 94 6.939730 TCACTCTCTTATTTAATTGTGTGCCA 59.060 34.615 0.00 0.00 0.00 4.92
94 95 7.377766 TCACTCTCTTATTTAATTGTGTGCC 57.622 36.000 0.00 0.00 0.00 5.01
95 96 7.414540 CCCTCACTCTCTTATTTAATTGTGTGC 60.415 40.741 0.00 0.00 0.00 4.57
96 97 7.607991 ACCCTCACTCTCTTATTTAATTGTGTG 59.392 37.037 0.00 0.00 0.00 3.82
97 98 7.690256 ACCCTCACTCTCTTATTTAATTGTGT 58.310 34.615 0.00 0.00 0.00 3.72
98 99 8.567285 AACCCTCACTCTCTTATTTAATTGTG 57.433 34.615 0.00 0.00 0.00 3.33
106 107 9.710818 TGTAACTATAACCCTCACTCTCTTATT 57.289 33.333 0.00 0.00 0.00 1.40
107 108 9.884814 ATGTAACTATAACCCTCACTCTCTTAT 57.115 33.333 0.00 0.00 0.00 1.73
109 110 9.357161 CTATGTAACTATAACCCTCACTCTCTT 57.643 37.037 0.00 0.00 0.00 2.85
110 111 7.945664 CCTATGTAACTATAACCCTCACTCTCT 59.054 40.741 0.00 0.00 0.00 3.10
111 112 7.724951 ACCTATGTAACTATAACCCTCACTCTC 59.275 40.741 0.00 0.00 0.00 3.20
112 113 7.593653 ACCTATGTAACTATAACCCTCACTCT 58.406 38.462 0.00 0.00 0.00 3.24
113 114 7.836479 ACCTATGTAACTATAACCCTCACTC 57.164 40.000 0.00 0.00 0.00 3.51
114 115 8.730948 TCTACCTATGTAACTATAACCCTCACT 58.269 37.037 0.00 0.00 0.00 3.41
115 116 8.930846 TCTACCTATGTAACTATAACCCTCAC 57.069 38.462 0.00 0.00 0.00 3.51
118 119 9.987726 GGTATCTACCTATGTAACTATAACCCT 57.012 37.037 0.00 0.00 43.10 4.34
119 120 8.897752 CGGTATCTACCTATGTAACTATAACCC 58.102 40.741 4.93 0.00 44.25 4.11
120 121 9.454859 ACGGTATCTACCTATGTAACTATAACC 57.545 37.037 4.93 0.00 44.25 2.85
126 127 9.175312 CATGATACGGTATCTACCTATGTAACT 57.825 37.037 24.27 0.00 44.25 2.24
127 128 8.954350 ACATGATACGGTATCTACCTATGTAAC 58.046 37.037 24.27 0.00 44.25 2.50
128 129 9.524496 AACATGATACGGTATCTACCTATGTAA 57.476 33.333 24.27 5.15 44.25 2.41
130 131 9.524496 TTAACATGATACGGTATCTACCTATGT 57.476 33.333 24.27 20.89 44.25 2.29
134 135 7.817962 GCATTTAACATGATACGGTATCTACCT 59.182 37.037 24.27 12.01 44.25 3.08
135 136 7.817962 AGCATTTAACATGATACGGTATCTACC 59.182 37.037 24.27 4.08 42.98 3.18
136 137 8.758633 AGCATTTAACATGATACGGTATCTAC 57.241 34.615 24.27 4.40 36.17 2.59
138 139 9.371136 CATAGCATTTAACATGATACGGTATCT 57.629 33.333 24.27 10.32 36.17 1.98
139 140 8.116753 GCATAGCATTTAACATGATACGGTATC 58.883 37.037 18.97 18.97 35.74 2.24
140 141 7.824289 AGCATAGCATTTAACATGATACGGTAT 59.176 33.333 0.00 0.00 0.00 2.73
141 142 7.158697 AGCATAGCATTTAACATGATACGGTA 58.841 34.615 0.00 0.00 0.00 4.02
142 143 5.997746 AGCATAGCATTTAACATGATACGGT 59.002 36.000 0.00 0.00 0.00 4.83
143 144 6.486253 AGCATAGCATTTAACATGATACGG 57.514 37.500 0.00 0.00 0.00 4.02
144 145 8.244494 AGTAGCATAGCATTTAACATGATACG 57.756 34.615 0.00 0.00 42.29 3.06
147 148 8.906867 ACAAAGTAGCATAGCATTTAACATGAT 58.093 29.630 0.00 0.00 0.00 2.45
148 149 8.279970 ACAAAGTAGCATAGCATTTAACATGA 57.720 30.769 0.00 0.00 0.00 3.07
151 152 9.389755 TGATACAAAGTAGCATAGCATTTAACA 57.610 29.630 0.00 0.00 0.00 2.41
154 155 8.506437 GCATGATACAAAGTAGCATAGCATTTA 58.494 33.333 16.91 0.00 0.00 1.40
155 156 7.013559 TGCATGATACAAAGTAGCATAGCATTT 59.986 33.333 18.86 0.00 29.60 2.32
156 157 6.487668 TGCATGATACAAAGTAGCATAGCATT 59.512 34.615 18.86 0.00 29.60 3.56
157 158 5.999600 TGCATGATACAAAGTAGCATAGCAT 59.000 36.000 18.86 0.00 29.60 3.79
158 159 5.367302 TGCATGATACAAAGTAGCATAGCA 58.633 37.500 18.86 18.86 30.91 3.49
159 160 5.929697 TGCATGATACAAAGTAGCATAGC 57.070 39.130 7.50 12.62 0.00 2.97
160 161 6.622245 GCCATGCATGATACAAAGTAGCATAG 60.622 42.308 28.31 5.81 39.00 2.23
161 162 5.181811 GCCATGCATGATACAAAGTAGCATA 59.818 40.000 28.31 0.00 39.00 3.14
162 163 4.022589 GCCATGCATGATACAAAGTAGCAT 60.023 41.667 28.31 2.37 41.42 3.79
163 164 3.316029 GCCATGCATGATACAAAGTAGCA 59.684 43.478 28.31 0.00 34.78 3.49
164 165 3.316029 TGCCATGCATGATACAAAGTAGC 59.684 43.478 28.31 17.58 31.71 3.58
165 166 5.503662 TTGCCATGCATGATACAAAGTAG 57.496 39.130 28.31 8.01 38.76 2.57
166 167 6.997476 TCTATTGCCATGCATGATACAAAGTA 59.003 34.615 28.31 15.79 38.76 2.24
167 168 5.829391 TCTATTGCCATGCATGATACAAAGT 59.171 36.000 28.31 15.55 38.76 2.66
168 169 6.321848 TCTATTGCCATGCATGATACAAAG 57.678 37.500 28.31 21.96 38.76 2.77
169 170 6.904463 ATCTATTGCCATGCATGATACAAA 57.096 33.333 28.31 13.75 38.76 2.83
170 171 7.067737 CCATATCTATTGCCATGCATGATACAA 59.932 37.037 28.31 25.14 38.76 2.41
171 172 6.544564 CCATATCTATTGCCATGCATGATACA 59.455 38.462 28.31 18.81 38.76 2.29
172 173 6.544931 ACCATATCTATTGCCATGCATGATAC 59.455 38.462 28.31 16.49 38.76 2.24
173 174 6.665695 ACCATATCTATTGCCATGCATGATA 58.334 36.000 28.31 15.92 38.76 2.15
174 175 5.516044 ACCATATCTATTGCCATGCATGAT 58.484 37.500 28.31 15.63 38.76 2.45
175 176 4.925836 ACCATATCTATTGCCATGCATGA 58.074 39.130 28.31 8.76 38.76 3.07
176 177 6.762702 TTACCATATCTATTGCCATGCATG 57.237 37.500 20.19 20.19 38.76 4.06
177 178 7.351952 AGATTACCATATCTATTGCCATGCAT 58.648 34.615 0.00 0.00 34.08 3.96
178 179 6.724351 AGATTACCATATCTATTGCCATGCA 58.276 36.000 0.00 0.00 33.17 3.96
179 180 8.781196 CATAGATTACCATATCTATTGCCATGC 58.219 37.037 0.00 0.00 42.45 4.06
216 217 8.998277 ACTACCTTCACAGTGTATAGTATCAT 57.002 34.615 0.00 0.00 0.00 2.45
221 222 8.998277 ATGATACTACCTTCACAGTGTATAGT 57.002 34.615 0.00 7.12 0.00 2.12
226 227 8.998277 AGTATATGATACTACCTTCACAGTGT 57.002 34.615 0.00 0.00 0.00 3.55
275 276 9.697990 GGCTACTTATAGTAGGGAGTAACATAT 57.302 37.037 13.95 0.00 46.31 1.78
276 277 8.898728 AGGCTACTTATAGTAGGGAGTAACATA 58.101 37.037 13.95 0.00 46.31 2.29
277 278 7.670559 CAGGCTACTTATAGTAGGGAGTAACAT 59.329 40.741 13.95 0.00 46.31 2.71
278 279 7.002879 CAGGCTACTTATAGTAGGGAGTAACA 58.997 42.308 13.95 0.00 46.31 2.41
279 280 7.230027 TCAGGCTACTTATAGTAGGGAGTAAC 58.770 42.308 13.95 0.00 46.31 2.50
280 281 7.398289 TCAGGCTACTTATAGTAGGGAGTAA 57.602 40.000 13.95 0.00 46.31 2.24
281 282 7.398289 TTCAGGCTACTTATAGTAGGGAGTA 57.602 40.000 13.95 0.00 46.31 2.59
282 283 5.926580 TCAGGCTACTTATAGTAGGGAGT 57.073 43.478 13.95 0.00 46.31 3.85
283 284 5.184287 GCTTCAGGCTACTTATAGTAGGGAG 59.816 48.000 13.95 4.87 46.31 4.30
284 285 5.078256 GCTTCAGGCTACTTATAGTAGGGA 58.922 45.833 13.95 0.00 46.31 4.20
285 286 4.833380 TGCTTCAGGCTACTTATAGTAGGG 59.167 45.833 13.95 0.00 46.31 3.53
286 287 6.015010 ACATGCTTCAGGCTACTTATAGTAGG 60.015 42.308 13.95 0.69 46.31 3.18
288 289 6.978674 ACATGCTTCAGGCTACTTATAGTA 57.021 37.500 0.00 0.00 42.39 1.82
289 290 5.878406 ACATGCTTCAGGCTACTTATAGT 57.122 39.130 0.00 0.00 42.39 2.12
290 291 6.520272 AGAACATGCTTCAGGCTACTTATAG 58.480 40.000 0.00 0.00 42.39 1.31
291 292 6.485830 AGAACATGCTTCAGGCTACTTATA 57.514 37.500 0.00 0.00 42.39 0.98
292 293 5.365021 AGAACATGCTTCAGGCTACTTAT 57.635 39.130 0.00 0.00 42.39 1.73
293 294 4.826274 AGAACATGCTTCAGGCTACTTA 57.174 40.909 0.00 0.00 42.39 2.24
294 295 3.710209 AGAACATGCTTCAGGCTACTT 57.290 42.857 0.00 0.00 42.39 2.24
295 296 3.262915 AGAAGAACATGCTTCAGGCTACT 59.737 43.478 13.48 0.00 45.21 2.57
296 297 3.604582 AGAAGAACATGCTTCAGGCTAC 58.395 45.455 13.48 0.00 45.21 3.58
297 298 3.517100 AGAGAAGAACATGCTTCAGGCTA 59.483 43.478 13.48 0.00 45.21 3.93
298 299 2.305343 AGAGAAGAACATGCTTCAGGCT 59.695 45.455 13.48 6.59 45.21 4.58
299 300 2.419324 CAGAGAAGAACATGCTTCAGGC 59.581 50.000 13.48 4.90 45.21 4.85
300 301 3.683822 GTCAGAGAAGAACATGCTTCAGG 59.316 47.826 13.48 4.84 45.21 3.86
301 302 4.313282 TGTCAGAGAAGAACATGCTTCAG 58.687 43.478 13.48 5.38 45.21 3.02
302 303 4.341366 TGTCAGAGAAGAACATGCTTCA 57.659 40.909 13.48 0.00 45.21 3.02
353 354 2.167861 GGGACTTCGCGTGAGATGC 61.168 63.158 16.77 0.00 0.00 3.91
398 399 6.416415 ACTTCTCTAGATTAACGACCTCTGA 58.584 40.000 0.00 0.00 0.00 3.27
425 426 3.896648 AATTACACGGTCAACTGCTTG 57.103 42.857 0.00 0.00 0.00 4.01
459 460 2.029649 GCCCGTGTAGTGACAAGAACTA 60.030 50.000 0.00 0.00 37.24 2.24
520 528 5.189145 CACTAGTGGAGTAAAATGGGGTACT 59.811 44.000 15.49 0.00 35.64 2.73
521 529 5.046087 ACACTAGTGGAGTAAAATGGGGTAC 60.046 44.000 26.12 0.00 35.64 3.34
548 556 4.158764 GCTACCATATCCTACTACTGGCTG 59.841 50.000 0.00 0.00 0.00 4.85
551 559 3.695060 CCGCTACCATATCCTACTACTGG 59.305 52.174 0.00 0.00 0.00 4.00
552 560 3.128938 GCCGCTACCATATCCTACTACTG 59.871 52.174 0.00 0.00 0.00 2.74
598 613 1.670811 CAGTCGTTGACTTGTTGGCTT 59.329 47.619 0.00 0.00 41.37 4.35
599 614 1.299541 CAGTCGTTGACTTGTTGGCT 58.700 50.000 0.00 0.00 41.37 4.75
638 653 2.563050 GATTGCAAAAGGGGCGCCTC 62.563 60.000 28.56 25.59 0.00 4.70
641 656 2.506881 CGATTGCAAAAGGGGCGC 60.507 61.111 1.71 0.00 0.00 6.53
778 802 2.151502 TGAGCTACAGAGAGAAGGGG 57.848 55.000 0.00 0.00 0.00 4.79
780 804 5.009610 GGAGTTATGAGCTACAGAGAGAAGG 59.990 48.000 0.00 0.00 0.00 3.46
781 805 5.827797 AGGAGTTATGAGCTACAGAGAGAAG 59.172 44.000 0.00 0.00 0.00 2.85
782 806 5.761205 AGGAGTTATGAGCTACAGAGAGAA 58.239 41.667 0.00 0.00 0.00 2.87
783 807 5.381184 AGGAGTTATGAGCTACAGAGAGA 57.619 43.478 0.00 0.00 0.00 3.10
835 887 0.251341 GTTGTGGCCAGAGGAATGGT 60.251 55.000 5.11 0.00 42.75 3.55
901 953 5.503927 AGAACCATGCTCACACTTGATAAT 58.496 37.500 0.00 0.00 0.00 1.28
905 957 2.936919 AGAACCATGCTCACACTTGA 57.063 45.000 0.00 0.00 0.00 3.02
955 1012 3.009723 AGTTCACAACCAATGCCGATAG 58.990 45.455 0.00 0.00 0.00 2.08
967 1024 0.947244 CCTGACCTGCAGTTCACAAC 59.053 55.000 10.27 0.00 43.33 3.32
987 1044 1.165907 AACTCATGGCCACACACACG 61.166 55.000 8.16 0.00 0.00 4.49
1035 1094 1.324740 GCCATTGCTGCATTCCTCCA 61.325 55.000 1.84 0.00 33.53 3.86
1121 1180 1.546834 GAGTGAACTAGCTAACGCCG 58.453 55.000 0.00 0.00 36.60 6.46
1124 1183 2.100989 AGGGGAGTGAACTAGCTAACG 58.899 52.381 0.00 0.00 0.00 3.18
1146 1205 5.576774 TGTAAGATGTTGTGCGTAGATCAAG 59.423 40.000 0.00 0.00 0.00 3.02
1155 1214 3.183574 TCGTTTCTGTAAGATGTTGTGCG 59.816 43.478 0.00 0.00 46.36 5.34
1173 1236 7.257722 AGAGTTGACAACAAATTTCATTCGTT 58.742 30.769 20.08 0.00 37.77 3.85
1189 1252 4.019792 TGTACTACCGGTAGAGTTGACA 57.980 45.455 41.26 29.96 36.97 3.58
1198 1261 6.208402 TCAGTTTGTGTAATGTACTACCGGTA 59.792 38.462 14.95 14.95 0.00 4.02
1208 1305 8.898761 TGAACTTACATTCAGTTTGTGTAATGT 58.101 29.630 0.00 0.00 43.17 2.71
1246 1350 3.819564 TCCCACGAAAGATATCACAGG 57.180 47.619 5.32 0.00 0.00 4.00
1313 1417 1.282875 CGCGCGTATGATCAGAGGA 59.717 57.895 24.19 0.00 0.00 3.71
1430 1534 1.883678 TGCCCCTCATCATCTTCAGA 58.116 50.000 0.00 0.00 0.00 3.27
1466 1570 1.372251 CTGAGCGATCGAATCCCCG 60.372 63.158 21.57 3.73 0.00 5.73
1540 1644 7.982761 ACCATCAGTAGTACTACTAGTATGC 57.017 40.000 30.34 5.14 43.98 3.14
1551 1667 5.163754 GCCAACATCAAACCATCAGTAGTAC 60.164 44.000 0.00 0.00 0.00 2.73
1621 2064 6.849305 CGTTTTTACGAGCTAACACTCAAATT 59.151 34.615 0.00 0.00 36.42 1.82
1623 2066 5.291614 ACGTTTTTACGAGCTAACACTCAAA 59.708 36.000 4.55 0.00 36.42 2.69
1737 2629 9.547753 GCTTAGATGTGACATCCTTAGAAAATA 57.452 33.333 21.05 2.00 0.00 1.40
1738 2630 8.270744 AGCTTAGATGTGACATCCTTAGAAAAT 58.729 33.333 21.05 2.95 0.00 1.82
1739 2631 7.624549 AGCTTAGATGTGACATCCTTAGAAAA 58.375 34.615 21.05 4.95 0.00 2.29
1740 2632 7.187824 AGCTTAGATGTGACATCCTTAGAAA 57.812 36.000 21.05 6.46 0.00 2.52
1741 2633 6.798427 AGCTTAGATGTGACATCCTTAGAA 57.202 37.500 21.05 7.83 0.00 2.10
1742 2634 6.183360 GGAAGCTTAGATGTGACATCCTTAGA 60.183 42.308 21.05 3.38 0.00 2.10
1743 2635 5.988561 GGAAGCTTAGATGTGACATCCTTAG 59.011 44.000 21.05 15.92 0.00 2.18
1744 2636 5.425217 TGGAAGCTTAGATGTGACATCCTTA 59.575 40.000 21.05 6.22 0.00 2.69
1745 2637 4.225942 TGGAAGCTTAGATGTGACATCCTT 59.774 41.667 21.05 16.28 0.00 3.36
1746 2638 3.776969 TGGAAGCTTAGATGTGACATCCT 59.223 43.478 21.05 8.88 0.00 3.24
1747 2639 3.873952 GTGGAAGCTTAGATGTGACATCC 59.126 47.826 21.05 6.31 0.00 3.51
1748 2640 4.507710 TGTGGAAGCTTAGATGTGACATC 58.492 43.478 17.46 17.46 0.00 3.06
1749 2641 4.558226 TGTGGAAGCTTAGATGTGACAT 57.442 40.909 0.00 0.00 0.00 3.06
1750 2642 4.350368 TTGTGGAAGCTTAGATGTGACA 57.650 40.909 0.00 0.00 0.00 3.58
1751 2643 5.886960 ATTTGTGGAAGCTTAGATGTGAC 57.113 39.130 0.00 0.00 0.00 3.67
1752 2644 6.092122 CGTTATTTGTGGAAGCTTAGATGTGA 59.908 38.462 0.00 0.00 0.00 3.58
1753 2645 6.128282 ACGTTATTTGTGGAAGCTTAGATGTG 60.128 38.462 0.00 0.00 0.00 3.21
1754 2646 5.938125 ACGTTATTTGTGGAAGCTTAGATGT 59.062 36.000 0.00 0.00 0.00 3.06
1755 2647 6.422776 ACGTTATTTGTGGAAGCTTAGATG 57.577 37.500 0.00 0.00 0.00 2.90
1756 2648 6.258068 GCTACGTTATTTGTGGAAGCTTAGAT 59.742 38.462 0.00 0.00 0.00 1.98
1757 2649 5.579511 GCTACGTTATTTGTGGAAGCTTAGA 59.420 40.000 0.00 0.00 0.00 2.10
1758 2650 5.350365 TGCTACGTTATTTGTGGAAGCTTAG 59.650 40.000 0.00 0.00 0.00 2.18
1759 2651 5.121142 GTGCTACGTTATTTGTGGAAGCTTA 59.879 40.000 0.00 0.00 0.00 3.09
1760 2652 4.069304 TGCTACGTTATTTGTGGAAGCTT 58.931 39.130 0.00 0.00 0.00 3.74
1761 2653 3.435671 GTGCTACGTTATTTGTGGAAGCT 59.564 43.478 0.00 0.00 0.00 3.74
1762 2654 3.425758 GGTGCTACGTTATTTGTGGAAGC 60.426 47.826 0.00 0.00 0.00 3.86
1763 2655 3.749088 TGGTGCTACGTTATTTGTGGAAG 59.251 43.478 0.00 0.00 0.00 3.46
1764 2656 3.741249 TGGTGCTACGTTATTTGTGGAA 58.259 40.909 0.00 0.00 0.00 3.53
1765 2657 3.404224 TGGTGCTACGTTATTTGTGGA 57.596 42.857 0.00 0.00 0.00 4.02
1766 2658 4.214545 TCTTTGGTGCTACGTTATTTGTGG 59.785 41.667 0.00 0.00 0.00 4.17
1767 2659 5.351233 TCTTTGGTGCTACGTTATTTGTG 57.649 39.130 0.00 0.00 0.00 3.33
1768 2660 5.297278 TGTTCTTTGGTGCTACGTTATTTGT 59.703 36.000 0.00 0.00 0.00 2.83
1769 2661 5.753744 TGTTCTTTGGTGCTACGTTATTTG 58.246 37.500 0.00 0.00 0.00 2.32
1770 2662 6.380095 TTGTTCTTTGGTGCTACGTTATTT 57.620 33.333 0.00 0.00 0.00 1.40
1771 2663 6.380095 TTTGTTCTTTGGTGCTACGTTATT 57.620 33.333 0.00 0.00 0.00 1.40
1772 2664 6.569179 ATTTGTTCTTTGGTGCTACGTTAT 57.431 33.333 0.00 0.00 0.00 1.89
1773 2665 7.493743 TTATTTGTTCTTTGGTGCTACGTTA 57.506 32.000 0.00 0.00 0.00 3.18
1774 2666 4.911514 ATTTGTTCTTTGGTGCTACGTT 57.088 36.364 0.00 0.00 0.00 3.99
1775 2667 6.380095 TTTATTTGTTCTTTGGTGCTACGT 57.620 33.333 0.00 0.00 0.00 3.57
1776 2668 7.566868 GCTTTTTATTTGTTCTTTGGTGCTACG 60.567 37.037 0.00 0.00 0.00 3.51
1777 2669 7.438160 AGCTTTTTATTTGTTCTTTGGTGCTAC 59.562 33.333 0.00 0.00 0.00 3.58
1778 2670 7.437862 CAGCTTTTTATTTGTTCTTTGGTGCTA 59.562 33.333 0.00 0.00 0.00 3.49
1779 2671 6.258507 CAGCTTTTTATTTGTTCTTTGGTGCT 59.741 34.615 0.00 0.00 0.00 4.40
1780 2672 6.421405 CAGCTTTTTATTTGTTCTTTGGTGC 58.579 36.000 0.00 0.00 0.00 5.01
1781 2673 6.018016 CCCAGCTTTTTATTTGTTCTTTGGTG 60.018 38.462 0.00 0.00 0.00 4.17
1782 2674 6.054941 CCCAGCTTTTTATTTGTTCTTTGGT 58.945 36.000 0.00 0.00 0.00 3.67
1783 2675 6.202762 GTCCCAGCTTTTTATTTGTTCTTTGG 59.797 38.462 0.00 0.00 0.00 3.28
1784 2676 6.760770 TGTCCCAGCTTTTTATTTGTTCTTTG 59.239 34.615 0.00 0.00 0.00 2.77
1785 2677 6.883744 TGTCCCAGCTTTTTATTTGTTCTTT 58.116 32.000 0.00 0.00 0.00 2.52
1786 2678 6.478512 TGTCCCAGCTTTTTATTTGTTCTT 57.521 33.333 0.00 0.00 0.00 2.52
1787 2679 6.478512 TTGTCCCAGCTTTTTATTTGTTCT 57.521 33.333 0.00 0.00 0.00 3.01
1788 2680 7.546778 TTTTGTCCCAGCTTTTTATTTGTTC 57.453 32.000 0.00 0.00 0.00 3.18
1789 2681 7.929941 TTTTTGTCCCAGCTTTTTATTTGTT 57.070 28.000 0.00 0.00 0.00 2.83
1812 2704 3.951775 TGTGTTTGTGGTCTGCTTTTT 57.048 38.095 0.00 0.00 0.00 1.94
1813 2705 3.951775 TTGTGTTTGTGGTCTGCTTTT 57.048 38.095 0.00 0.00 0.00 2.27
1814 2706 3.195396 ACATTGTGTTTGTGGTCTGCTTT 59.805 39.130 0.00 0.00 0.00 3.51
1815 2707 2.760092 ACATTGTGTTTGTGGTCTGCTT 59.240 40.909 0.00 0.00 0.00 3.91
1816 2708 2.099592 CACATTGTGTTTGTGGTCTGCT 59.900 45.455 8.69 0.00 40.60 4.24
1817 2709 2.159254 ACACATTGTGTTTGTGGTCTGC 60.159 45.455 16.62 0.00 45.08 4.26
1818 2710 3.781079 ACACATTGTGTTTGTGGTCTG 57.219 42.857 16.62 0.00 45.08 3.51
1824 2716 7.308169 CATCTAGATGTGACACATTGTGTTTGT 60.308 37.037 22.56 10.13 39.27 2.83
1825 2717 7.019418 CATCTAGATGTGACACATTGTGTTTG 58.981 38.462 22.56 11.76 39.27 2.93
1826 2718 7.137490 CATCTAGATGTGACACATTGTGTTT 57.863 36.000 22.56 9.14 39.27 2.83
1827 2719 6.732531 CATCTAGATGTGACACATTGTGTT 57.267 37.500 22.56 7.68 39.27 3.32
1841 2733 7.155328 GGGTTTGTATAGGACACATCTAGATG 58.845 42.308 27.63 27.63 44.15 2.90
1842 2734 6.270231 GGGGTTTGTATAGGACACATCTAGAT 59.730 42.308 0.00 0.00 37.96 1.98
1843 2735 5.601313 GGGGTTTGTATAGGACACATCTAGA 59.399 44.000 0.00 0.00 37.96 2.43
1844 2736 5.602978 AGGGGTTTGTATAGGACACATCTAG 59.397 44.000 0.00 0.00 37.96 2.43
1845 2737 5.535029 AGGGGTTTGTATAGGACACATCTA 58.465 41.667 0.00 0.00 37.96 1.98
1846 2738 4.371681 AGGGGTTTGTATAGGACACATCT 58.628 43.478 0.00 0.00 37.96 2.90
1847 2739 4.772886 AGGGGTTTGTATAGGACACATC 57.227 45.455 0.00 0.00 37.96 3.06
1848 2740 5.968167 TCTTAGGGGTTTGTATAGGACACAT 59.032 40.000 0.00 0.00 37.96 3.21
1849 2741 5.343715 TCTTAGGGGTTTGTATAGGACACA 58.656 41.667 0.00 0.00 37.96 3.72
1850 2742 5.945144 TCTTAGGGGTTTGTATAGGACAC 57.055 43.478 0.00 0.00 37.96 3.67
1851 2743 6.956102 TTTCTTAGGGGTTTGTATAGGACA 57.044 37.500 0.00 0.00 35.78 4.02
1852 2744 8.683615 CAATTTTCTTAGGGGTTTGTATAGGAC 58.316 37.037 0.00 0.00 0.00 3.85
1853 2745 7.340999 GCAATTTTCTTAGGGGTTTGTATAGGA 59.659 37.037 0.00 0.00 0.00 2.94
1854 2746 7.123547 TGCAATTTTCTTAGGGGTTTGTATAGG 59.876 37.037 0.00 0.00 0.00 2.57
1855 2747 8.062065 TGCAATTTTCTTAGGGGTTTGTATAG 57.938 34.615 0.00 0.00 0.00 1.31
1856 2748 7.672239 ACTGCAATTTTCTTAGGGGTTTGTATA 59.328 33.333 0.00 0.00 0.00 1.47
1857 2749 6.496911 ACTGCAATTTTCTTAGGGGTTTGTAT 59.503 34.615 0.00 0.00 0.00 2.29
1858 2750 5.836358 ACTGCAATTTTCTTAGGGGTTTGTA 59.164 36.000 0.00 0.00 0.00 2.41
1859 2751 4.653801 ACTGCAATTTTCTTAGGGGTTTGT 59.346 37.500 0.00 0.00 0.00 2.83
1860 2752 5.213891 ACTGCAATTTTCTTAGGGGTTTG 57.786 39.130 0.00 0.00 0.00 2.93
1861 2753 4.283467 GGACTGCAATTTTCTTAGGGGTTT 59.717 41.667 0.00 0.00 0.00 3.27
1862 2754 3.832490 GGACTGCAATTTTCTTAGGGGTT 59.168 43.478 0.00 0.00 0.00 4.11
1863 2755 3.076032 AGGACTGCAATTTTCTTAGGGGT 59.924 43.478 0.00 0.00 0.00 4.95
1864 2756 3.701664 AGGACTGCAATTTTCTTAGGGG 58.298 45.455 0.00 0.00 0.00 4.79
1865 2757 5.728637 AAAGGACTGCAATTTTCTTAGGG 57.271 39.130 0.00 0.00 0.00 3.53
1866 2758 9.710900 AAAATAAAGGACTGCAATTTTCTTAGG 57.289 29.630 0.00 0.00 0.00 2.69
1877 2769 4.261405 CCACGTGAAAAATAAAGGACTGCA 60.261 41.667 19.30 0.00 0.00 4.41
1935 2833 9.378551 CAACACAATAACTATCCTGCTACTTAA 57.621 33.333 0.00 0.00 0.00 1.85
1964 2862 2.666098 GCTTCCCCCGGCTCAAGTA 61.666 63.158 0.00 0.00 0.00 2.24
2007 2905 5.302711 CGTGCGTGTGTACTATGTTAAAAG 58.697 41.667 0.00 0.00 0.00 2.27
2011 2913 2.252747 GCGTGCGTGTGTACTATGTTA 58.747 47.619 0.00 0.00 0.00 2.41
2016 2918 0.959867 TAGGGCGTGCGTGTGTACTA 60.960 55.000 0.00 0.00 0.00 1.82
2018 2920 1.143969 GATAGGGCGTGCGTGTGTAC 61.144 60.000 0.00 0.00 0.00 2.90
2021 2923 1.421410 GAAGATAGGGCGTGCGTGTG 61.421 60.000 0.00 0.00 0.00 3.82
2027 2929 1.202568 TGCTCATGAAGATAGGGCGTG 60.203 52.381 0.00 0.00 0.00 5.34
2029 2931 2.141517 CTTGCTCATGAAGATAGGGCG 58.858 52.381 0.00 0.00 0.00 6.13
2030 2932 3.137533 GACTTGCTCATGAAGATAGGGC 58.862 50.000 0.00 0.00 0.00 5.19
2032 2934 3.068732 TCGGACTTGCTCATGAAGATAGG 59.931 47.826 0.00 0.00 0.00 2.57
2035 2937 2.762887 TCTCGGACTTGCTCATGAAGAT 59.237 45.455 0.00 0.00 0.00 2.40
2036 2938 2.165234 CTCTCGGACTTGCTCATGAAGA 59.835 50.000 0.00 0.00 0.00 2.87
2037 2939 2.165234 TCTCTCGGACTTGCTCATGAAG 59.835 50.000 0.00 0.00 0.00 3.02
2038 2940 2.094494 GTCTCTCGGACTTGCTCATGAA 60.094 50.000 0.00 0.00 41.46 2.57
2040 2942 1.470632 GGTCTCTCGGACTTGCTCATG 60.471 57.143 0.00 0.00 43.97 3.07
2041 2943 0.820871 GGTCTCTCGGACTTGCTCAT 59.179 55.000 0.00 0.00 43.97 2.90
2042 2944 1.587043 CGGTCTCTCGGACTTGCTCA 61.587 60.000 0.00 0.00 43.97 4.26
2043 2945 1.137825 CGGTCTCTCGGACTTGCTC 59.862 63.158 0.00 0.00 43.97 4.26
2044 2946 1.303398 TCGGTCTCTCGGACTTGCT 60.303 57.895 0.00 0.00 43.97 3.91
2045 2947 1.137825 CTCGGTCTCTCGGACTTGC 59.862 63.158 0.00 0.00 43.97 4.01
2046 2948 0.448593 GACTCGGTCTCTCGGACTTG 59.551 60.000 0.00 0.00 43.97 3.16
2047 2949 0.036448 TGACTCGGTCTCTCGGACTT 59.964 55.000 5.77 0.00 43.97 3.01
2049 2951 0.658897 GATGACTCGGTCTCTCGGAC 59.341 60.000 5.77 0.00 43.79 4.79
2050 2952 0.252197 TGATGACTCGGTCTCTCGGA 59.748 55.000 5.77 0.00 33.15 4.55
2052 2954 1.087501 TGTGATGACTCGGTCTCTCG 58.912 55.000 5.77 0.00 33.15 4.04
2053 2955 2.685388 TGATGTGATGACTCGGTCTCTC 59.315 50.000 5.77 3.96 33.15 3.20
2054 2956 2.728007 TGATGTGATGACTCGGTCTCT 58.272 47.619 5.77 0.00 33.15 3.10
2055 2957 3.317711 AGATGATGTGATGACTCGGTCTC 59.682 47.826 5.77 2.63 33.15 3.36
2057 2959 3.724508 AGATGATGTGATGACTCGGTC 57.275 47.619 0.00 0.00 0.00 4.79
2058 2960 3.448660 TCAAGATGATGTGATGACTCGGT 59.551 43.478 0.00 0.00 0.00 4.69
2067 2969 6.938596 ACTTTGTCAATCTCAAGATGATGTGA 59.061 34.615 0.00 0.00 34.49 3.58
2073 2975 5.471116 TGGTGACTTTGTCAATCTCAAGATG 59.529 40.000 1.73 0.00 44.49 2.90
2079 2981 3.499918 CCTGTGGTGACTTTGTCAATCTC 59.500 47.826 1.73 1.13 44.49 2.75
2088 2990 2.594592 GGCGCCTGTGGTGACTTT 60.595 61.111 22.15 0.00 38.38 2.66
2100 3002 4.217159 ATCGGTTACGGAGGCGCC 62.217 66.667 21.89 21.89 41.39 6.53
2104 3006 0.179092 GTTCCCATCGGTTACGGAGG 60.179 60.000 0.00 0.00 41.39 4.30
2109 3011 2.094338 AGAAGACGTTCCCATCGGTTAC 60.094 50.000 0.00 0.00 32.48 2.50
2113 3015 0.179108 GGAGAAGACGTTCCCATCGG 60.179 60.000 0.00 0.00 32.48 4.18
2131 3033 1.429021 CCGATGTGCGTTCAATGGG 59.571 57.895 0.00 0.00 38.67 4.00
2141 3043 0.248215 CAATCTTTCCGCCGATGTGC 60.248 55.000 0.00 0.00 0.00 4.57
2142 3044 0.378257 CCAATCTTTCCGCCGATGTG 59.622 55.000 0.00 0.00 0.00 3.21
2148 3050 4.871513 GGATTAATTCCAATCTTTCCGCC 58.128 43.478 1.91 0.00 44.74 6.13
2161 3063 6.403527 GGTGCTTGCATTTTTGGGATTAATTC 60.404 38.462 0.00 0.00 0.00 2.17
2169 3071 1.202675 ACTGGTGCTTGCATTTTTGGG 60.203 47.619 0.00 0.00 0.00 4.12
2200 3103 0.744771 GCCCACGAGGATTCAAGTCC 60.745 60.000 0.00 0.00 38.24 3.85
2212 3115 1.837789 TGGTTAAACCAGCCCACGA 59.162 52.632 0.00 0.00 44.79 4.35
2249 3152 2.911819 TTCCAATAAAAAGGCGCGAG 57.088 45.000 12.10 0.00 0.00 5.03
2250 3153 2.814919 TCTTTCCAATAAAAAGGCGCGA 59.185 40.909 12.10 0.00 35.03 5.87
2254 3157 7.210174 AGAACTTGTCTTTCCAATAAAAAGGC 58.790 34.615 0.00 0.00 38.51 4.35
2421 3325 2.123982 GGCCTCCATGAAGCTGGG 60.124 66.667 0.00 0.00 36.89 4.45
2506 3436 9.158097 TGCATTATGCCTCCATGTATATCTATA 57.842 33.333 15.06 0.00 44.23 1.31
2507 3437 7.935755 GTGCATTATGCCTCCATGTATATCTAT 59.064 37.037 15.06 0.00 44.23 1.98
2508 3438 7.092935 TGTGCATTATGCCTCCATGTATATCTA 60.093 37.037 15.06 0.00 44.23 1.98
2533 3548 7.827819 TTCGTCCTGAAGATTTATACACTTG 57.172 36.000 0.00 0.00 31.44 3.16
2540 3555 9.667107 TCAAAGTATTTCGTCCTGAAGATTTAT 57.333 29.630 0.00 0.00 35.03 1.40
2546 3561 7.806690 TCATTTCAAAGTATTTCGTCCTGAAG 58.193 34.615 0.00 0.00 35.03 3.02
2554 3569 6.582295 CACAACCCTCATTTCAAAGTATTTCG 59.418 38.462 0.00 0.00 35.03 3.46
2606 3621 8.028354 GTCTGAGAGGATGAATAGTATCATGTG 58.972 40.741 0.00 0.00 40.08 3.21
2651 3666 6.811253 AATACCTTGAAATGCGACTTGTAA 57.189 33.333 0.00 0.00 0.00 2.41
2656 3671 5.066505 GGATGAAATACCTTGAAATGCGACT 59.933 40.000 0.00 0.00 0.00 4.18
2685 3700 6.128391 GGATGTCATGTGTACGTGTGTAAAAT 60.128 38.462 0.00 0.00 34.59 1.82
2696 3711 7.041372 ACAAGTAAACAAGGATGTCATGTGTAC 60.041 37.037 0.00 9.02 39.40 2.90
2704 3719 7.095355 ACGATTGTACAAGTAAACAAGGATGTC 60.095 37.037 14.65 0.65 39.40 3.06
2795 3810 1.005394 TCGTTTTGGCTCTCGACCC 60.005 57.895 0.00 0.00 0.00 4.46
2812 3827 4.673441 ACAACATATAGTGCGAGTGAGTC 58.327 43.478 0.00 0.00 0.00 3.36
2813 3828 4.720649 ACAACATATAGTGCGAGTGAGT 57.279 40.909 0.00 0.00 0.00 3.41
2860 3877 8.965172 CATCTCACAAATTTTCTCTCACAAAAG 58.035 33.333 0.00 0.00 0.00 2.27
2866 3883 7.716560 TCAAGACATCTCACAAATTTTCTCTCA 59.283 33.333 0.00 0.00 0.00 3.27
2876 3893 6.506147 CACCAAATTCAAGACATCTCACAAA 58.494 36.000 0.00 0.00 0.00 2.83
2879 3896 4.217118 AGCACCAAATTCAAGACATCTCAC 59.783 41.667 0.00 0.00 0.00 3.51
2888 3905 5.902613 TGGATCTTAGCACCAAATTCAAG 57.097 39.130 0.00 0.00 0.00 3.02
2915 3932 8.729805 AGGAAGAGCAACTTTATCTTAATCTG 57.270 34.615 0.00 0.00 39.13 2.90
2937 3954 6.486657 CGGCATCCTATTTAATGAGAAAAGGA 59.513 38.462 0.00 0.00 33.78 3.36
2938 3955 6.263168 ACGGCATCCTATTTAATGAGAAAAGG 59.737 38.462 0.00 0.00 0.00 3.11
2943 3960 5.056480 CACACGGCATCCTATTTAATGAGA 58.944 41.667 0.00 0.00 0.00 3.27
2995 4012 1.539827 GGCAGTTCCAACGCTTGTATT 59.460 47.619 6.34 0.00 34.01 1.89
3024 4041 1.595093 GCATAACCACGCAAGGGCTT 61.595 55.000 0.00 0.00 41.83 4.35
3077 4098 7.739043 CGGTCTTAACTTTGAGAAAATACGAAC 59.261 37.037 0.00 0.00 0.00 3.95
3135 4161 6.072064 CCTCTTACCTCTCTTAAAACTCGTCA 60.072 42.308 0.00 0.00 0.00 4.35
3139 4165 9.192642 ACTATCCTCTTACCTCTCTTAAAACTC 57.807 37.037 0.00 0.00 0.00 3.01
3177 4203 7.099120 GTCAAAATTGCCCTCAACTAATCAAT 58.901 34.615 0.00 0.00 34.60 2.57
3186 4212 4.155709 TGTATGGTCAAAATTGCCCTCAA 58.844 39.130 0.00 0.00 36.51 3.02
3258 4284 6.493115 AGAGAGAGAGAGAGAGAGATCACTAG 59.507 46.154 0.00 0.00 0.00 2.57
3302 4338 5.112129 AGAGGGTAAACTCTTGTGTTTGT 57.888 39.130 10.02 0.00 45.21 2.83
3318 4354 6.449830 AAAGTCTATGTTTTGGTAGAGGGT 57.550 37.500 0.00 0.00 0.00 4.34
3499 4537 6.203647 ACTTAAACATTGAAGTGGCGTTTAC 58.796 36.000 0.00 0.00 34.61 2.01
3669 4712 3.911868 TGTTGGTAAGAAATGCACATGC 58.088 40.909 0.00 0.00 42.50 4.06
3686 4729 9.462174 TTCTACTAAGCAAATGATTTGTTGTTG 57.538 29.630 18.12 9.23 42.56 3.33
3738 4786 3.517602 TCTAAATTCGTGGGATGTCGTG 58.482 45.455 0.00 0.00 0.00 4.35
4011 5079 6.924111 TGAAGTCAAATAAGGAAAGATTGCC 58.076 36.000 0.00 0.00 0.00 4.52
4062 5130 6.721321 TGGACTTTCACTTCGACAAATAAAC 58.279 36.000 0.00 0.00 0.00 2.01
4063 5131 6.928979 TGGACTTTCACTTCGACAAATAAA 57.071 33.333 0.00 0.00 0.00 1.40
4072 5140 4.113354 GGCTAGTATGGACTTTCACTTCG 58.887 47.826 0.00 0.00 37.10 3.79
4095 5165 7.273381 GTGTAAGGTTTGTCAATGATTATGTGC 59.727 37.037 0.00 0.00 0.00 4.57
4169 5240 2.711009 GGTCCCAGATTGATATGACCCA 59.289 50.000 0.00 0.00 37.00 4.51
4217 5288 7.856415 AGCCTATTCAGAGTTCAGTTTAATCT 58.144 34.615 0.00 0.00 0.00 2.40
4220 5291 7.719633 ACAAAGCCTATTCAGAGTTCAGTTTAA 59.280 33.333 0.00 0.00 0.00 1.52
4334 5412 5.416083 AGCTACATGTACGCACAATTCTTA 58.584 37.500 21.50 0.00 38.42 2.10
4380 5505 7.425577 TCACGCTTGAGGATAATAAATCATG 57.574 36.000 0.00 0.00 0.00 3.07
4396 5521 8.586273 CCTGTTAAAAATGAAATATCACGCTTG 58.414 33.333 0.00 0.00 38.69 4.01
4689 5818 3.747579 CCAGCCCTGCCCTCCAAT 61.748 66.667 0.00 0.00 0.00 3.16
4982 6111 3.129638 TCAACTTGGAACTTTGTTTCCCG 59.870 43.478 0.00 0.00 44.11 5.14
5054 6183 2.418628 GTCCACATTTGTGTATGGTCCG 59.581 50.000 9.66 0.00 44.21 4.79
5070 6199 2.879026 GAGTCTTCTTGTTTGGGTCCAC 59.121 50.000 0.00 0.00 0.00 4.02
5190 6319 8.914213 ATCTCATATCCATCCAGTTATCTTCT 57.086 34.615 0.00 0.00 0.00 2.85
5270 6399 3.932710 TGGACATTGTCTCAAACGCTATC 59.067 43.478 16.02 0.00 32.47 2.08
5287 6416 5.175859 GGTAAAAGAACATCGAGATGGACA 58.824 41.667 16.37 0.00 42.91 4.02
5296 6425 6.964370 TCATTATTTGCGGTAAAAGAACATCG 59.036 34.615 0.00 0.00 0.00 3.84
5336 6465 7.411274 CAAAAGAGTCTCTACTATACACTCCG 58.589 42.308 1.88 0.00 35.56 4.63
5372 6501 7.770201 TGAATTGGAAAATCTAAATCGCATGA 58.230 30.769 0.00 0.00 0.00 3.07
5377 6506 8.128582 TCGGATTGAATTGGAAAATCTAAATCG 58.871 33.333 0.00 0.00 32.15 3.34
5402 6532 7.099764 TCAACTGTCAACCTCTCTTATCAATC 58.900 38.462 0.00 0.00 0.00 2.67
5539 6669 0.249238 CATGACCGCTAGTGCTCTCC 60.249 60.000 0.00 0.00 36.97 3.71
5540 6670 0.873743 GCATGACCGCTAGTGCTCTC 60.874 60.000 0.00 0.00 36.97 3.20
5575 6705 8.891671 AAACACAAATAATCACTTCTTTGCAT 57.108 26.923 0.00 0.00 33.83 3.96
5896 7031 0.037697 TGGTTCGGTTCATGTCCTCG 60.038 55.000 0.00 0.00 0.00 4.63
5937 7072 7.121759 GCATATACATTAGAACATTCCCAGCAT 59.878 37.037 0.00 0.00 0.00 3.79
6063 7198 4.633565 AGTCGCCTTGAAGAAAATGAGATC 59.366 41.667 0.00 0.00 0.00 2.75
6069 7204 5.123979 GTCCAATAGTCGCCTTGAAGAAAAT 59.876 40.000 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.