Multiple sequence alignment - TraesCS3D01G089200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G089200 chr3D 100.000 9904 0 0 1 9904 45235614 45245517 0.000000e+00 18290.0
1 TraesCS3D01G089200 chr3D 85.149 202 22 4 7835 8036 500663787 500663594 6.070000e-47 200.0
2 TraesCS3D01G089200 chr3A 92.743 3817 205 29 3804 7574 57093769 57097559 0.000000e+00 5448.0
3 TraesCS3D01G089200 chr3A 89.887 2482 147 46 366 2828 57090090 57092486 0.000000e+00 3097.0
4 TraesCS3D01G089200 chr3A 90.674 890 56 15 2940 3806 57092610 57093495 0.000000e+00 1158.0
5 TraesCS3D01G089200 chr3A 85.836 819 58 25 8397 9179 57098215 57099011 0.000000e+00 817.0
6 TraesCS3D01G089200 chr3A 90.244 410 16 3 7652 8044 57097556 57097958 1.910000e-141 514.0
7 TraesCS3D01G089200 chr3A 93.182 176 10 2 8224 8397 57098010 57098185 3.550000e-64 257.0
8 TraesCS3D01G089200 chr3A 81.395 301 39 12 7113 7405 639750837 639750546 7.740000e-56 230.0
9 TraesCS3D01G089200 chr3A 94.118 51 3 0 8143 8193 57097960 57098010 2.970000e-10 78.7
10 TraesCS3D01G089200 chr3B 93.704 2176 103 16 5412 7574 70870626 70872780 0.000000e+00 3229.0
11 TraesCS3D01G089200 chr3B 86.973 2326 191 52 7652 9904 70872777 70875063 0.000000e+00 2514.0
12 TraesCS3D01G089200 chr3B 93.246 1525 75 7 1523 3038 70866469 70867974 0.000000e+00 2220.0
13 TraesCS3D01G089200 chr3B 92.356 1439 90 12 3022 4448 70868205 70869635 0.000000e+00 2030.0
14 TraesCS3D01G089200 chr3B 91.324 1337 89 15 185 1515 70865021 70866336 0.000000e+00 1801.0
15 TraesCS3D01G089200 chr3B 93.389 953 30 18 4447 5373 70869685 70870630 0.000000e+00 1380.0
16 TraesCS3D01G089200 chr3B 87.797 295 28 7 1105 1397 791023628 791023916 1.230000e-88 339.0
17 TraesCS3D01G089200 chr3B 93.088 217 15 0 1164 1380 791026553 791026337 1.610000e-82 318.0
18 TraesCS3D01G089200 chr1A 88.143 894 79 12 994 1886 504786685 504787552 0.000000e+00 1038.0
19 TraesCS3D01G089200 chr7B 94.017 234 14 0 1164 1397 745073430 745073663 1.220000e-93 355.0
20 TraesCS3D01G089200 chr7B 92.308 234 18 0 1164 1397 630507061 630507294 5.730000e-87 333.0
21 TraesCS3D01G089200 chr5B 92.735 234 17 0 1164 1397 23308338 23308105 1.230000e-88 339.0
22 TraesCS3D01G089200 chr4A 92.308 234 17 1 1164 1397 39719860 39720092 2.060000e-86 331.0
23 TraesCS3D01G089200 chr4A 85.393 89 8 3 7571 7656 681669805 681669891 4.930000e-13 87.9
24 TraesCS3D01G089200 chr6D 77.077 650 92 30 9276 9901 422601035 422601651 1.240000e-83 322.0
25 TraesCS3D01G089200 chr6D 80.620 258 32 11 9644 9901 422215479 422215718 6.110000e-42 183.0
26 TraesCS3D01G089200 chr6D 76.282 312 43 26 9276 9577 422215150 422215440 4.820000e-28 137.0
27 TraesCS3D01G089200 chr6A 83.004 253 31 7 9651 9901 565340482 565340724 1.670000e-52 219.0
28 TraesCS3D01G089200 chr6A 76.506 332 39 20 9276 9592 565340142 565340449 2.880000e-30 145.0
29 TraesCS3D01G089200 chr1D 90.698 86 5 1 7573 7655 372835754 372835839 2.920000e-20 111.0
30 TraesCS3D01G089200 chr2B 86.139 101 10 2 7571 7667 134045454 134045554 1.360000e-18 106.0
31 TraesCS3D01G089200 chr7D 90.244 82 5 1 7577 7655 573982288 573982369 4.890000e-18 104.0
32 TraesCS3D01G089200 chr4B 84.211 114 10 5 7565 7674 598404915 598404806 4.890000e-18 104.0
33 TraesCS3D01G089200 chr2D 86.364 88 9 1 7571 7655 82181922 82182009 1.060000e-14 93.5
34 TraesCS3D01G089200 chr2A 84.158 101 11 3 7571 7667 82346229 82346328 1.060000e-14 93.5
35 TraesCS3D01G089200 chr6B 86.364 88 7 5 7572 7655 720762467 720762553 3.810000e-14 91.6
36 TraesCS3D01G089200 chr6B 94.000 50 3 0 9281 9330 636744463 636744512 1.070000e-09 76.8
37 TraesCS3D01G089200 chr4D 84.615 91 12 2 7565 7655 490141715 490141803 1.370000e-13 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G089200 chr3D 45235614 45245517 9903 False 18290.000000 18290 100.000000 1 9904 1 chr3D.!!$F1 9903
1 TraesCS3D01G089200 chr3A 57090090 57099011 8921 False 1624.242857 5448 90.954857 366 9179 7 chr3A.!!$F1 8813
2 TraesCS3D01G089200 chr3B 70865021 70875063 10042 False 2195.666667 3229 91.832000 185 9904 6 chr3B.!!$F2 9719
3 TraesCS3D01G089200 chr1A 504786685 504787552 867 False 1038.000000 1038 88.143000 994 1886 1 chr1A.!!$F1 892
4 TraesCS3D01G089200 chr6D 422601035 422601651 616 False 322.000000 322 77.077000 9276 9901 1 chr6D.!!$F1 625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
976 993 0.106918 TCTCTCGCTCCTCTTCCTCC 60.107 60.000 0.00 0.00 0.00 4.30 F
1405 1422 1.226030 CCAGGTGACCCGTTTTCGTC 61.226 60.000 0.00 0.00 42.35 4.20 F
1616 1759 1.364721 TGGTCTGTTGTGTTGACGTG 58.635 50.000 0.00 0.00 0.00 4.49 F
3139 3569 0.032678 CCGCAGTCTGTCAAGTCACT 59.967 55.000 0.93 0.00 0.00 3.41 F
3234 3669 0.546122 AGTGTCAGCCCACAACTTCA 59.454 50.000 2.16 0.00 37.82 3.02 F
5113 5937 1.588082 CTGCCTGGCACAATTGTCC 59.412 57.895 19.30 13.27 38.70 4.02 F
5404 6228 0.320374 TAAAGAGGTCACGGGCACAG 59.680 55.000 0.00 0.00 0.00 3.66 F
6309 7137 0.946221 GTCCGCTGGTGTCAAGTCTG 60.946 60.000 0.00 0.00 0.00 3.51 F
7168 8001 1.151668 CGAACAGAAGAGCCTGGTTG 58.848 55.000 0.00 0.00 38.44 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1974 2134 0.602106 CCCCAGTGCTCATATCTGCG 60.602 60.000 0.00 0.0 0.00 5.18 R
2230 2390 2.893489 GGCCTGATCCCATTTCCATTAC 59.107 50.000 0.00 0.0 0.00 1.89 R
3574 4009 2.937799 AGCCAAACAACAGCACAAAATG 59.062 40.909 0.00 0.0 0.00 2.32 R
5083 5907 0.676151 CCAGGCAGCTTTCCAGAGAC 60.676 60.000 4.72 0.0 0.00 3.36 R
5135 5959 1.153107 CATCCCGGAAGCATCTGCA 60.153 57.895 0.73 0.0 45.16 4.41 R
6228 7056 0.259647 TATCATTTGCTGCCAGGCCT 59.740 50.000 9.64 0.0 0.00 5.19 R
6635 7463 0.970427 TGACCTCATACCGCTGCTCA 60.970 55.000 0.00 0.0 0.00 4.26 R
7807 8644 0.680618 TTGCCCACCTTGCTCAATTG 59.319 50.000 0.00 0.0 0.00 2.32 R
8910 9840 0.323360 GCACCCCTTAGCCATGAACA 60.323 55.000 0.00 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.034625 TCTTGGGGGCCCTTTCTT 57.965 55.556 24.38 0.00 36.94 2.52
18 19 2.260619 TCTTGGGGGCCCTTTCTTT 58.739 52.632 24.38 0.00 36.94 2.52
19 20 0.565674 TCTTGGGGGCCCTTTCTTTT 59.434 50.000 24.38 0.00 36.94 2.27
20 21 0.686789 CTTGGGGGCCCTTTCTTTTG 59.313 55.000 24.38 0.14 36.94 2.44
21 22 0.766288 TTGGGGGCCCTTTCTTTTGG 60.766 55.000 24.38 0.00 36.94 3.28
22 23 1.152118 GGGGGCCCTTTCTTTTGGT 60.152 57.895 24.38 0.00 0.00 3.67
23 24 1.480212 GGGGGCCCTTTCTTTTGGTG 61.480 60.000 24.38 0.00 0.00 4.17
24 25 0.471022 GGGGCCCTTTCTTTTGGTGA 60.471 55.000 24.38 0.00 0.00 4.02
25 26 0.969149 GGGCCCTTTCTTTTGGTGAG 59.031 55.000 17.04 0.00 0.00 3.51
26 27 0.318441 GGCCCTTTCTTTTGGTGAGC 59.682 55.000 0.00 0.00 0.00 4.26
27 28 1.332195 GCCCTTTCTTTTGGTGAGCT 58.668 50.000 0.00 0.00 0.00 4.09
28 29 1.688735 GCCCTTTCTTTTGGTGAGCTT 59.311 47.619 0.00 0.00 0.00 3.74
29 30 2.546584 GCCCTTTCTTTTGGTGAGCTTG 60.547 50.000 0.00 0.00 0.00 4.01
30 31 2.036346 CCCTTTCTTTTGGTGAGCTTGG 59.964 50.000 0.00 0.00 0.00 3.61
31 32 2.546584 CCTTTCTTTTGGTGAGCTTGGC 60.547 50.000 0.00 0.00 0.00 4.52
32 33 2.071778 TTCTTTTGGTGAGCTTGGCT 57.928 45.000 0.00 0.00 43.88 4.75
47 48 2.956799 TGGCTCACAAGCTTCGCCAA 62.957 55.000 19.98 8.71 46.76 4.52
48 49 1.208614 GCTCACAAGCTTCGCCAAG 59.791 57.895 0.00 0.00 45.55 3.61
49 50 1.510480 GCTCACAAGCTTCGCCAAGT 61.510 55.000 0.00 0.00 45.55 3.16
50 51 0.947244 CTCACAAGCTTCGCCAAGTT 59.053 50.000 0.00 0.00 31.45 2.66
51 52 0.662619 TCACAAGCTTCGCCAAGTTG 59.337 50.000 0.00 0.00 31.86 3.16
52 53 0.318107 CACAAGCTTCGCCAAGTTGG 60.318 55.000 18.17 18.17 41.55 3.77
61 62 3.365265 CCAAGTTGGCGGAGGTGC 61.365 66.667 9.46 0.00 0.00 5.01
62 63 3.726517 CAAGTTGGCGGAGGTGCG 61.727 66.667 0.00 0.00 35.06 5.34
75 76 4.729798 GTGCGGCGGCGTTGTAAC 62.730 66.667 32.35 18.19 44.10 2.50
76 77 4.973055 TGCGGCGGCGTTGTAACT 62.973 61.111 32.35 0.00 44.10 2.24
77 78 4.143363 GCGGCGGCGTTGTAACTC 62.143 66.667 32.35 9.49 0.00 3.01
78 79 2.431942 CGGCGGCGTTGTAACTCT 60.432 61.111 24.74 0.00 0.00 3.24
79 80 2.025418 CGGCGGCGTTGTAACTCTT 61.025 57.895 24.74 0.00 0.00 2.85
80 81 1.562575 CGGCGGCGTTGTAACTCTTT 61.563 55.000 24.74 0.00 0.00 2.52
81 82 0.589708 GGCGGCGTTGTAACTCTTTT 59.410 50.000 9.37 0.00 0.00 2.27
82 83 1.002142 GGCGGCGTTGTAACTCTTTTT 60.002 47.619 9.37 0.00 0.00 1.94
109 110 3.520623 GCTTGGCCATGGTAAGGAT 57.479 52.632 23.58 0.00 0.00 3.24
110 111 1.035139 GCTTGGCCATGGTAAGGATG 58.965 55.000 23.58 7.92 0.00 3.51
111 112 1.410083 GCTTGGCCATGGTAAGGATGA 60.410 52.381 23.58 0.00 0.00 2.92
112 113 2.301346 CTTGGCCATGGTAAGGATGAC 58.699 52.381 14.67 0.00 0.00 3.06
113 114 1.294041 TGGCCATGGTAAGGATGACA 58.706 50.000 14.67 0.00 0.00 3.58
114 115 1.638070 TGGCCATGGTAAGGATGACAA 59.362 47.619 14.67 0.00 0.00 3.18
115 116 2.042297 TGGCCATGGTAAGGATGACAAA 59.958 45.455 14.67 0.00 0.00 2.83
116 117 3.299503 GGCCATGGTAAGGATGACAAAT 58.700 45.455 14.67 0.00 0.00 2.32
117 118 3.706086 GGCCATGGTAAGGATGACAAATT 59.294 43.478 14.67 0.00 0.00 1.82
118 119 4.162131 GGCCATGGTAAGGATGACAAATTT 59.838 41.667 14.67 0.00 0.00 1.82
119 120 5.338300 GGCCATGGTAAGGATGACAAATTTT 60.338 40.000 14.67 0.00 0.00 1.82
120 121 6.172630 GCCATGGTAAGGATGACAAATTTTT 58.827 36.000 14.67 0.00 0.00 1.94
121 122 6.313658 GCCATGGTAAGGATGACAAATTTTTC 59.686 38.462 14.67 0.00 0.00 2.29
122 123 7.385267 CCATGGTAAGGATGACAAATTTTTCA 58.615 34.615 9.35 9.35 0.00 2.69
123 124 7.546667 CCATGGTAAGGATGACAAATTTTTCAG 59.453 37.037 12.27 0.00 0.00 3.02
124 125 6.454795 TGGTAAGGATGACAAATTTTTCAGC 58.545 36.000 12.96 12.96 0.00 4.26
125 126 6.041409 TGGTAAGGATGACAAATTTTTCAGCA 59.959 34.615 20.59 6.45 29.41 4.41
126 127 6.928492 GGTAAGGATGACAAATTTTTCAGCAA 59.072 34.615 20.59 6.27 29.41 3.91
127 128 6.849588 AAGGATGACAAATTTTTCAGCAAC 57.150 33.333 20.59 7.56 29.41 4.17
128 129 5.916318 AGGATGACAAATTTTTCAGCAACA 58.084 33.333 20.59 0.00 29.41 3.33
129 130 6.527423 AGGATGACAAATTTTTCAGCAACAT 58.473 32.000 20.59 1.06 29.41 2.71
130 131 6.647895 AGGATGACAAATTTTTCAGCAACATC 59.352 34.615 20.59 9.09 29.41 3.06
131 132 5.886715 TGACAAATTTTTCAGCAACATCG 57.113 34.783 2.88 0.00 0.00 3.84
132 133 5.586339 TGACAAATTTTTCAGCAACATCGA 58.414 33.333 2.88 0.00 0.00 3.59
133 134 5.686841 TGACAAATTTTTCAGCAACATCGAG 59.313 36.000 2.88 0.00 0.00 4.04
134 135 5.591099 ACAAATTTTTCAGCAACATCGAGT 58.409 33.333 0.00 0.00 0.00 4.18
135 136 6.042143 ACAAATTTTTCAGCAACATCGAGTT 58.958 32.000 0.00 0.00 42.42 3.01
163 164 4.914291 CGAAGGCGTTTGTGGTTC 57.086 55.556 0.00 0.00 0.00 3.62
164 165 1.281656 CGAAGGCGTTTGTGGTTCC 59.718 57.895 0.00 0.00 0.00 3.62
165 166 1.440938 CGAAGGCGTTTGTGGTTCCA 61.441 55.000 0.00 0.00 0.00 3.53
166 167 0.741915 GAAGGCGTTTGTGGTTCCAA 59.258 50.000 0.00 0.00 0.00 3.53
167 168 0.744281 AAGGCGTTTGTGGTTCCAAG 59.256 50.000 0.00 0.00 0.00 3.61
168 169 1.299850 GGCGTTTGTGGTTCCAAGC 60.300 57.895 0.00 0.00 0.00 4.01
169 170 1.299850 GCGTTTGTGGTTCCAAGCC 60.300 57.895 0.00 0.00 0.00 4.35
170 171 2.010582 GCGTTTGTGGTTCCAAGCCA 62.011 55.000 0.00 0.00 0.00 4.75
175 176 3.667476 TGGTTCCAAGCCACTCCA 58.333 55.556 0.00 0.00 0.00 3.86
176 177 1.926657 TGGTTCCAAGCCACTCCAA 59.073 52.632 0.00 0.00 0.00 3.53
177 178 0.178992 TGGTTCCAAGCCACTCCAAG 60.179 55.000 0.00 0.00 0.00 3.61
178 179 1.527433 GGTTCCAAGCCACTCCAAGC 61.527 60.000 0.00 0.00 0.00 4.01
179 180 0.538287 GTTCCAAGCCACTCCAAGCT 60.538 55.000 0.00 0.00 42.40 3.74
193 194 1.227556 AAGCTTGGCGAAGACGTGT 60.228 52.632 13.20 0.00 41.59 4.49
196 197 2.280524 TTGGCGAAGACGTGTGGG 60.281 61.111 0.00 0.00 41.59 4.61
199 200 2.280592 GCGAAGACGTGTGGGGTT 60.281 61.111 0.00 0.00 41.98 4.11
202 203 1.525077 GAAGACGTGTGGGGTTGCA 60.525 57.895 0.00 0.00 0.00 4.08
203 204 0.889186 GAAGACGTGTGGGGTTGCAT 60.889 55.000 0.00 0.00 0.00 3.96
205 206 2.668212 ACGTGTGGGGTTGCATCG 60.668 61.111 0.00 0.00 0.00 3.84
209 210 3.799755 GTGGGGTTGCATCGTCGC 61.800 66.667 0.00 0.00 0.00 5.19
218 219 3.024609 CATCGTCGCGGATCCACG 61.025 66.667 16.12 16.12 34.78 4.94
227 228 2.105128 GGATCCACGCGACTCCTG 59.895 66.667 15.93 0.00 0.00 3.86
230 231 1.658686 GATCCACGCGACTCCTGAGT 61.659 60.000 15.93 0.00 45.84 3.41
249 250 0.180642 TGGAGCTACGTCGAGGATCT 59.819 55.000 12.85 5.28 0.00 2.75
270 272 1.873903 GCTTGACTCGAGCTTGGTGAA 60.874 52.381 13.61 0.00 37.84 3.18
273 275 1.895798 TGACTCGAGCTTGGTGAAGAT 59.104 47.619 13.61 0.00 0.00 2.40
278 281 1.372087 GAGCTTGGTGAAGATGGGCG 61.372 60.000 0.00 0.00 0.00 6.13
283 286 2.124695 GTGAAGATGGGCGGGGTC 60.125 66.667 0.00 0.00 0.00 4.46
303 306 2.458610 CGACGTCGAGGATCCACGA 61.459 63.158 33.35 27.47 43.02 4.35
305 308 0.317103 GACGTCGAGGATCCACGATG 60.317 60.000 36.86 36.86 46.21 3.84
341 344 1.939785 GATGTGCGGAGTAGCGACG 60.940 63.158 0.00 0.00 40.67 5.12
348 351 2.023041 GAGTAGCGACGTCGAGGC 59.977 66.667 39.74 25.87 43.02 4.70
352 355 3.963687 TAGCGACGTCGAGGCTCCA 62.964 63.158 39.74 11.82 43.02 3.86
361 364 4.500116 GAGGCTCCACGCGACTCC 62.500 72.222 15.93 6.31 40.44 3.85
403 406 1.080501 CGCTTGACTCCGAGCTTGA 60.081 57.895 1.22 0.00 45.60 3.02
413 416 1.150567 CCGAGCTTGATGAAGGCGAG 61.151 60.000 1.22 0.00 0.00 5.03
503 507 1.484240 GAGTCATCTAGCTGCAAGGGT 59.516 52.381 1.02 0.00 0.00 4.34
522 526 2.095718 GGTCGATGACTTTTCACAAGGC 60.096 50.000 0.00 0.00 33.38 4.35
535 545 1.452108 CAAGGCGAGGATTCCCCAC 60.452 63.158 0.00 0.00 37.41 4.61
537 547 4.547367 GGCGAGGATTCCCCACGG 62.547 72.222 13.55 0.00 46.93 4.94
539 549 2.499685 CGAGGATTCCCCACGGTC 59.500 66.667 0.00 0.00 43.85 4.79
540 550 2.499685 GAGGATTCCCCACGGTCG 59.500 66.667 0.00 0.00 37.41 4.79
541 551 2.284405 AGGATTCCCCACGGTCGT 60.284 61.111 0.00 0.00 37.41 4.34
542 552 2.186125 GGATTCCCCACGGTCGTC 59.814 66.667 0.00 0.00 34.14 4.20
543 553 2.652095 GGATTCCCCACGGTCGTCA 61.652 63.158 0.00 0.00 34.14 4.35
544 554 1.447314 GATTCCCCACGGTCGTCAC 60.447 63.158 0.00 0.00 0.00 3.67
590 600 4.141158 ACTTTTGGCTAGGGATATCCTTGG 60.141 45.833 21.18 16.66 45.47 3.61
593 603 0.250513 GCTAGGGATATCCTTGGCGG 59.749 60.000 23.39 9.28 45.47 6.13
603 614 1.149174 CCTTGGCGGCATGGTAGAT 59.851 57.895 29.31 0.00 0.00 1.98
646 657 3.196613 GGCCTTATAGCGAAGGTCG 57.803 57.895 14.24 0.00 46.73 4.79
716 729 1.670811 CACCTTTTGTTGTGAGAGCGT 59.329 47.619 0.00 0.00 34.37 5.07
723 736 1.893137 TGTTGTGAGAGCGTGACCTAT 59.107 47.619 0.00 0.00 0.00 2.57
727 740 1.746220 GTGAGAGCGTGACCTATGTCT 59.254 52.381 0.00 0.00 42.28 3.41
728 741 1.745653 TGAGAGCGTGACCTATGTCTG 59.254 52.381 0.00 0.00 42.28 3.51
771 785 5.590530 TGTTTTTACATTTCTGTGTGCCT 57.409 34.783 0.00 0.00 36.79 4.75
779 793 5.168691 ACATTTCTGTGTGCCTAATAGGGC 61.169 45.833 8.60 1.62 42.54 5.19
794 808 7.287927 GCCTAATAGGGCCTAAAATTTCTTTCT 59.712 37.037 18.91 0.00 45.92 2.52
802 816 7.027760 GGCCTAAAATTTCTTTCTAAGTTCGG 58.972 38.462 0.00 0.00 0.00 4.30
833 847 3.768468 TTCAAACCGTTCGAAAGCTTT 57.232 38.095 12.53 12.53 0.00 3.51
839 853 3.885358 ACCGTTCGAAAGCTTTGAATTC 58.115 40.909 18.30 0.00 0.00 2.17
862 876 2.145053 CGTATTTCGCTGCACAGTTC 57.855 50.000 0.00 0.00 0.00 3.01
942 959 0.245539 TCAGAAACCCATCGTCGTCC 59.754 55.000 0.00 0.00 0.00 4.79
960 977 2.172930 GTCCCTAATCCCAAACCCTCTC 59.827 54.545 0.00 0.00 0.00 3.20
961 978 2.047296 TCCCTAATCCCAAACCCTCTCT 59.953 50.000 0.00 0.00 0.00 3.10
962 979 2.439880 CCCTAATCCCAAACCCTCTCTC 59.560 54.545 0.00 0.00 0.00 3.20
963 980 2.103263 CCTAATCCCAAACCCTCTCTCG 59.897 54.545 0.00 0.00 0.00 4.04
976 993 0.106918 TCTCTCGCTCCTCTTCCTCC 60.107 60.000 0.00 0.00 0.00 4.30
992 1009 3.330720 CCGCTCCCTTCCCAGGTT 61.331 66.667 0.00 0.00 38.79 3.50
1374 1391 3.062466 CTCACCCTCCGCGACTCA 61.062 66.667 8.23 0.00 0.00 3.41
1405 1422 1.226030 CCAGGTGACCCGTTTTCGTC 61.226 60.000 0.00 0.00 42.35 4.20
1433 1450 3.738590 GCCGTTGGTTTGGTTGTTATTGT 60.739 43.478 0.00 0.00 0.00 2.71
1436 1453 5.103000 CGTTGGTTTGGTTGTTATTGTTGA 58.897 37.500 0.00 0.00 0.00 3.18
1519 1537 3.426568 GCTGCGGCAGAGACAACC 61.427 66.667 32.72 9.86 38.54 3.77
1532 1675 4.839668 GAGACAACCTCTATCTATGCGT 57.160 45.455 0.00 0.00 38.86 5.24
1616 1759 1.364721 TGGTCTGTTGTGTTGACGTG 58.635 50.000 0.00 0.00 0.00 4.49
1622 1765 2.152016 TGTTGTGTTGACGTGGAAACA 58.848 42.857 0.00 0.00 34.01 2.83
1635 1786 4.518970 ACGTGGAAACAAGATACTGCATTT 59.481 37.500 0.00 0.00 46.06 2.32
1637 1788 5.920273 CGTGGAAACAAGATACTGCATTTTT 59.080 36.000 0.00 0.00 46.06 1.94
1683 1842 2.227388 GTCAGCAAAGGTCAATGTGGAG 59.773 50.000 0.00 0.00 0.00 3.86
1751 1911 4.911514 AAAAACTTCGCAGAGGCTTTTA 57.088 36.364 0.00 0.00 39.49 1.52
1822 1982 8.592105 ATGGTCATTATTGTTCAAACTGTTTG 57.408 30.769 23.72 23.72 41.96 2.93
1856 2016 4.318831 GCCAGTGTTTGTTCTACTCTTTCG 60.319 45.833 0.00 0.00 0.00 3.46
1968 2128 1.377725 CCTGCGCCCAACAGAATCT 60.378 57.895 4.18 0.00 37.32 2.40
1974 2134 2.032178 GCGCCCAACAGAATCTATCAAC 59.968 50.000 0.00 0.00 0.00 3.18
2067 2227 5.529060 GGGATGAAAGAGCTAGTTAATGTGG 59.471 44.000 0.00 0.00 0.00 4.17
2097 2257 9.937175 GAATTGGAAATTTACACTATCTAGCAC 57.063 33.333 1.47 0.00 0.00 4.40
2120 2280 7.544622 CACAGAAATGTTACTACCTACTGCTA 58.455 38.462 0.00 0.00 0.00 3.49
2125 2285 7.899648 AATGTTACTACCTACTGCTACAGAT 57.100 36.000 0.78 0.00 35.18 2.90
2136 2296 4.344978 ACTGCTACAGATCAACAGTAGGA 58.655 43.478 0.78 10.60 39.69 2.94
2159 2319 2.278332 AGGTTTTCTCCAAGACCTGC 57.722 50.000 0.00 0.00 40.84 4.85
2229 2389 6.238484 GCAAGACACTGTTACTTCAGTTGATT 60.238 38.462 0.00 0.00 44.92 2.57
2230 2390 6.851222 AGACACTGTTACTTCAGTTGATTG 57.149 37.500 0.00 0.00 44.92 2.67
2421 2581 7.550551 TCCAAATTGCAACATCTTTTTGTAACA 59.449 29.630 15.89 0.33 32.37 2.41
2613 2773 7.712264 TTTTCTTGTTGGCATATTGTCAAAG 57.288 32.000 0.00 0.00 44.23 2.77
2665 2825 5.279384 CAAAATATCCAGCTGCTGATTGAC 58.721 41.667 30.10 0.00 32.44 3.18
2848 3014 8.943909 ACTTTGATTAGGTATTAACTCTTCCG 57.056 34.615 0.00 0.00 0.00 4.30
2942 3120 6.155691 TCGGTTAGCAACAATTACTTAACG 57.844 37.500 0.00 0.00 0.00 3.18
3099 3526 8.805688 CATCATATCGATCATGCTAACTTGTAG 58.194 37.037 0.00 0.00 29.21 2.74
3139 3569 0.032678 CCGCAGTCTGTCAAGTCACT 59.967 55.000 0.93 0.00 0.00 3.41
3140 3570 1.135046 CGCAGTCTGTCAAGTCACTG 58.865 55.000 0.93 0.00 39.47 3.66
3142 3572 2.287608 CGCAGTCTGTCAAGTCACTGTA 60.288 50.000 0.93 0.00 38.83 2.74
3143 3573 3.717707 GCAGTCTGTCAAGTCACTGTAA 58.282 45.455 0.93 0.00 38.83 2.41
3146 3576 5.237344 GCAGTCTGTCAAGTCACTGTAAAAT 59.763 40.000 0.93 0.00 38.83 1.82
3147 3577 6.238484 GCAGTCTGTCAAGTCACTGTAAAATT 60.238 38.462 0.93 0.00 38.83 1.82
3148 3578 7.679638 GCAGTCTGTCAAGTCACTGTAAAATTT 60.680 37.037 0.93 0.00 38.83 1.82
3150 3580 8.184192 AGTCTGTCAAGTCACTGTAAAATTTTG 58.816 33.333 13.76 0.00 0.00 2.44
3169 3603 8.795842 AATTTTGGTACGATGACTTATGGTAA 57.204 30.769 0.00 0.00 32.71 2.85
3173 3607 8.795842 TTGGTACGATGACTTATGGTAAAATT 57.204 30.769 0.00 0.00 32.71 1.82
3234 3669 0.546122 AGTGTCAGCCCACAACTTCA 59.454 50.000 2.16 0.00 37.82 3.02
3275 3710 3.460857 GTCAAAGATATGACCGCTCCT 57.539 47.619 0.00 0.00 43.11 3.69
3276 3711 4.585955 GTCAAAGATATGACCGCTCCTA 57.414 45.455 0.00 0.00 43.11 2.94
3281 3716 7.489757 GTCAAAGATATGACCGCTCCTATATTC 59.510 40.741 0.00 0.00 43.11 1.75
3401 3836 8.669243 GTTGTGTTCAATTTCCACCATTTTAAA 58.331 29.630 0.00 0.00 35.92 1.52
3431 3866 3.513515 TGCCCTTTTTGTATGAATGTCCC 59.486 43.478 0.00 0.00 0.00 4.46
3569 4004 6.473455 GCATGATTTTGTTGAGGTATGCTAAC 59.527 38.462 0.00 0.00 37.34 2.34
3571 4006 7.144722 TGATTTTGTTGAGGTATGCTAACTG 57.855 36.000 0.00 0.00 0.00 3.16
3574 4009 7.429636 TTTTGTTGAGGTATGCTAACTGTAC 57.570 36.000 0.00 0.00 0.00 2.90
3682 4117 7.798596 ACTGCAACATAAAGATCAAGATAGG 57.201 36.000 0.00 0.00 0.00 2.57
3753 4208 2.158234 TGTCCCTTGGGGTTGCTAATTT 60.158 45.455 5.78 0.00 44.74 1.82
3776 4231 2.553028 CCACCCACTTGTCTAACAGCAT 60.553 50.000 0.00 0.00 0.00 3.79
3810 4541 3.080300 TCGGCCATTTTCATTACTGGT 57.920 42.857 2.24 0.00 0.00 4.00
3832 4563 9.807921 CTGGTTGTATAAAGGGGACATAAATAT 57.192 33.333 0.00 0.00 0.00 1.28
3836 4567 9.802039 TTGTATAAAGGGGACATAAATATGACC 57.198 33.333 11.83 11.83 44.27 4.02
3864 4595 4.770531 TGTTGTCACCAGTAGCAGTAGTAT 59.229 41.667 0.00 0.00 0.00 2.12
3917 4648 5.807011 GTGGATTGGTCAAAATAGATGCAAC 59.193 40.000 0.00 0.00 0.00 4.17
3920 4651 5.895636 TTGGTCAAAATAGATGCAACGAT 57.104 34.783 0.00 0.00 0.00 3.73
3933 4664 4.990543 TGCAACGATTCACTAAACTGAG 57.009 40.909 0.00 0.00 0.00 3.35
3982 4713 8.853077 TTCCCTTGCAATATCTAGAATGTATG 57.147 34.615 0.00 0.00 0.00 2.39
4173 4905 4.895297 ACATGGTTGTTTCCTCTGTTGAAT 59.105 37.500 0.00 0.00 29.55 2.57
4207 4939 4.270084 TCTGTTTGCTTTGTTCTCGTACTG 59.730 41.667 0.00 0.00 0.00 2.74
4219 4951 9.493206 TTTGTTCTCGTACTGTTTGTAATTTTC 57.507 29.630 0.00 0.00 32.25 2.29
4320 5060 2.103094 CGCAATCACCTTCCAGGAGATA 59.897 50.000 3.47 0.00 43.49 1.98
4363 5103 4.335400 TTTTCTTTTGGGTTGATGGCTC 57.665 40.909 0.00 0.00 0.00 4.70
4503 5294 2.288886 GCCTAGACCCGGACATACAATC 60.289 54.545 0.73 0.00 0.00 2.67
4928 5734 7.390440 GCATGGAGTATATTATTGGTGCAACTA 59.610 37.037 2.04 0.00 36.74 2.24
4957 5766 8.909708 TTTATGCCAACTATTTTTCATCTTCG 57.090 30.769 0.00 0.00 0.00 3.79
5042 5863 6.070824 TGTCATGTAATGTACTCATGTCCAGT 60.071 38.462 14.93 0.00 46.80 4.00
5113 5937 1.588082 CTGCCTGGCACAATTGTCC 59.412 57.895 19.30 13.27 38.70 4.02
5135 5959 4.217118 CCTTGTTCACTGAGCTGCTTTATT 59.783 41.667 2.53 0.00 0.00 1.40
5397 6221 9.651718 GCATTTTATAATTCTAAAGAGGTCACG 57.348 33.333 0.00 0.00 0.00 4.35
5404 6228 0.320374 TAAAGAGGTCACGGGCACAG 59.680 55.000 0.00 0.00 0.00 3.66
5684 6508 3.198853 GGGAGCTAAAAGATGTGAGGACT 59.801 47.826 0.00 0.00 0.00 3.85
5717 6541 3.172339 TGCAGAATGGCCTTGGTAATTT 58.828 40.909 3.32 0.00 35.86 1.82
5765 6589 5.600696 ACCATCACAAATTTGGACAACTTC 58.399 37.500 21.74 0.00 34.52 3.01
5766 6590 5.128499 ACCATCACAAATTTGGACAACTTCA 59.872 36.000 21.74 0.00 34.52 3.02
5839 6663 6.529220 GGAAGCCATCTACTCTAATTCACAT 58.471 40.000 0.00 0.00 0.00 3.21
5842 6666 6.893583 AGCCATCTACTCTAATTCACATGTT 58.106 36.000 0.00 0.00 0.00 2.71
5843 6667 8.023021 AGCCATCTACTCTAATTCACATGTTA 57.977 34.615 0.00 0.00 0.00 2.41
5918 6744 2.806434 TGCAGCTTACATGGGAAACAT 58.194 42.857 0.00 0.00 41.57 2.71
5921 6747 3.947834 GCAGCTTACATGGGAAACATACT 59.052 43.478 0.00 0.00 37.84 2.12
5922 6748 4.399303 GCAGCTTACATGGGAAACATACTT 59.601 41.667 0.00 0.00 37.84 2.24
6193 7020 8.698973 TCAAAGTTATGGACAATGGTAAAAGA 57.301 30.769 0.00 0.00 0.00 2.52
6194 7021 9.137459 TCAAAGTTATGGACAATGGTAAAAGAA 57.863 29.630 0.00 0.00 0.00 2.52
6228 7056 9.616156 TCCTTGTTATGTTAGACAAAACTACAA 57.384 29.630 0.00 0.00 35.54 2.41
6309 7137 0.946221 GTCCGCTGGTGTCAAGTCTG 60.946 60.000 0.00 0.00 0.00 3.51
6331 7159 4.459685 TGAAACCCGAAAAGAAAGAACACA 59.540 37.500 0.00 0.00 0.00 3.72
6340 7168 6.529829 CGAAAAGAAAGAACACATGTTGGAAA 59.470 34.615 1.07 0.00 38.56 3.13
6342 7170 8.424274 AAAAGAAAGAACACATGTTGGAAATC 57.576 30.769 1.07 0.00 38.56 2.17
6406 7234 4.585364 CGAGCAATCAACAGCTAATCAAG 58.415 43.478 0.00 0.00 42.04 3.02
6472 7300 7.517320 AGTGATAGATACAGTGAGTCTCTCAT 58.483 38.462 15.13 3.49 42.73 2.90
6559 7387 6.149129 AGTTCTGTTTCTGCCCTTAAAAAG 57.851 37.500 0.00 0.00 0.00 2.27
6611 7439 6.015940 ACTCAATTCTTTGGGTGACAGATTTC 60.016 38.462 0.00 0.00 44.98 2.17
6635 7463 6.896860 TCCCAATGTTTGAATGGAATAGTGAT 59.103 34.615 0.00 0.00 36.27 3.06
6644 7472 1.202568 TGGAATAGTGATGAGCAGCGG 60.203 52.381 0.00 0.00 0.00 5.52
6750 7578 3.844211 TCCAGTATTCCTTAAGCCTGTGT 59.156 43.478 0.00 0.00 0.00 3.72
6847 7676 8.328864 GCTGTTTAGTTGCTGATAATACACTAC 58.671 37.037 0.00 0.00 0.00 2.73
6856 7685 6.034150 TGCTGATAATACACTACGAACAAACG 59.966 38.462 0.00 0.00 39.31 3.60
6857 7686 6.252015 GCTGATAATACACTACGAACAAACGA 59.748 38.462 0.00 0.00 37.03 3.85
6955 7785 6.243900 AGAACTTTGTTGATGACATCCAGAT 58.756 36.000 12.90 0.00 38.26 2.90
7060 7893 6.392354 CATTTGGATGGGCATTGATACATAC 58.608 40.000 0.00 0.00 0.00 2.39
7064 7897 4.630069 GGATGGGCATTGATACATACGTAC 59.370 45.833 0.00 0.00 0.00 3.67
7129 7962 7.062749 TCTACTGAACAGTATGGAAAGTTGT 57.937 36.000 13.85 0.00 42.44 3.32
7130 7963 6.929049 TCTACTGAACAGTATGGAAAGTTGTG 59.071 38.462 13.85 0.67 42.44 3.33
7140 7973 8.967218 CAGTATGGAAAGTTGTGTATTTTTGTG 58.033 33.333 0.00 0.00 0.00 3.33
7145 7978 9.273016 TGGAAAGTTGTGTATTTTTGTGAAAAA 57.727 25.926 0.00 0.00 43.76 1.94
7168 8001 1.151668 CGAACAGAAGAGCCTGGTTG 58.848 55.000 0.00 0.00 38.44 3.77
7191 8024 2.027745 ACTGGGTGTTCACATCTAGCTG 60.028 50.000 3.60 0.00 38.92 4.24
7200 8033 7.417612 GTGTTCACATCTAGCTGAAAGAAAAA 58.582 34.615 0.00 0.00 34.07 1.94
7235 8068 6.884280 ATTTTCTGTTTTCTCAGTACCCTG 57.116 37.500 0.00 0.00 40.25 4.45
7236 8069 5.367945 TTTCTGTTTTCTCAGTACCCTGT 57.632 39.130 0.00 0.00 39.82 4.00
7238 8071 4.957296 TCTGTTTTCTCAGTACCCTGTTC 58.043 43.478 0.00 0.00 39.82 3.18
7239 8072 4.654262 TCTGTTTTCTCAGTACCCTGTTCT 59.346 41.667 0.00 0.00 39.82 3.01
7241 8074 5.365619 TGTTTTCTCAGTACCCTGTTCTTC 58.634 41.667 0.00 0.00 39.82 2.87
7242 8075 5.130477 TGTTTTCTCAGTACCCTGTTCTTCT 59.870 40.000 0.00 0.00 39.82 2.85
7243 8076 5.470047 TTTCTCAGTACCCTGTTCTTCTC 57.530 43.478 0.00 0.00 39.82 2.87
7387 8221 7.065803 TCCTTGTTTCTCTTTTCAAGTGTGTAG 59.934 37.037 0.00 0.00 36.53 2.74
7388 8222 7.065803 CCTTGTTTCTCTTTTCAAGTGTGTAGA 59.934 37.037 0.00 0.00 36.53 2.59
7519 8353 7.389232 TGATAAATAGTCATACATGCCTCCAG 58.611 38.462 0.00 0.00 0.00 3.86
7575 8412 9.618890 ATGCATCAGTCAACATAATTTAGTACT 57.381 29.630 0.00 0.00 0.00 2.73
7576 8413 9.098355 TGCATCAGTCAACATAATTTAGTACTC 57.902 33.333 0.00 0.00 0.00 2.59
7577 8414 8.552034 GCATCAGTCAACATAATTTAGTACTCC 58.448 37.037 0.00 0.00 0.00 3.85
7578 8415 9.046296 CATCAGTCAACATAATTTAGTACTCCC 57.954 37.037 0.00 0.00 0.00 4.30
7579 8416 8.375493 TCAGTCAACATAATTTAGTACTCCCT 57.625 34.615 0.00 0.00 0.00 4.20
7580 8417 8.475639 TCAGTCAACATAATTTAGTACTCCCTC 58.524 37.037 0.00 0.00 0.00 4.30
7581 8418 7.711339 CAGTCAACATAATTTAGTACTCCCTCC 59.289 40.741 0.00 0.00 0.00 4.30
7582 8419 6.700520 GTCAACATAATTTAGTACTCCCTCCG 59.299 42.308 0.00 0.00 0.00 4.63
7583 8420 6.381994 TCAACATAATTTAGTACTCCCTCCGT 59.618 38.462 0.00 0.00 0.00 4.69
7584 8421 6.803366 ACATAATTTAGTACTCCCTCCGTT 57.197 37.500 0.00 0.00 0.00 4.44
7585 8422 6.814043 ACATAATTTAGTACTCCCTCCGTTC 58.186 40.000 0.00 0.00 0.00 3.95
7586 8423 4.750021 AATTTAGTACTCCCTCCGTTCC 57.250 45.455 0.00 0.00 0.00 3.62
7587 8424 2.905415 TTAGTACTCCCTCCGTTCCA 57.095 50.000 0.00 0.00 0.00 3.53
7588 8425 3.393426 TTAGTACTCCCTCCGTTCCAT 57.607 47.619 0.00 0.00 0.00 3.41
7589 8426 4.524802 TTAGTACTCCCTCCGTTCCATA 57.475 45.455 0.00 0.00 0.00 2.74
7590 8427 3.393426 AGTACTCCCTCCGTTCCATAA 57.607 47.619 0.00 0.00 0.00 1.90
7591 8428 3.924922 AGTACTCCCTCCGTTCCATAAT 58.075 45.455 0.00 0.00 0.00 1.28
7592 8429 4.296056 AGTACTCCCTCCGTTCCATAATT 58.704 43.478 0.00 0.00 0.00 1.40
7593 8430 3.840124 ACTCCCTCCGTTCCATAATTC 57.160 47.619 0.00 0.00 0.00 2.17
7594 8431 3.385115 ACTCCCTCCGTTCCATAATTCT 58.615 45.455 0.00 0.00 0.00 2.40
7595 8432 3.780850 ACTCCCTCCGTTCCATAATTCTT 59.219 43.478 0.00 0.00 0.00 2.52
7596 8433 4.130118 CTCCCTCCGTTCCATAATTCTTG 58.870 47.826 0.00 0.00 0.00 3.02
7597 8434 3.521937 TCCCTCCGTTCCATAATTCTTGT 59.478 43.478 0.00 0.00 0.00 3.16
7598 8435 3.877508 CCCTCCGTTCCATAATTCTTGTC 59.122 47.826 0.00 0.00 0.00 3.18
7599 8436 4.513442 CCTCCGTTCCATAATTCTTGTCA 58.487 43.478 0.00 0.00 0.00 3.58
7600 8437 5.126067 CCTCCGTTCCATAATTCTTGTCAT 58.874 41.667 0.00 0.00 0.00 3.06
7601 8438 5.008019 CCTCCGTTCCATAATTCTTGTCATG 59.992 44.000 0.00 0.00 0.00 3.07
7602 8439 4.881273 TCCGTTCCATAATTCTTGTCATGG 59.119 41.667 0.00 0.00 39.48 3.66
7603 8440 4.640201 CCGTTCCATAATTCTTGTCATGGT 59.360 41.667 3.23 0.00 39.21 3.55
7604 8441 5.125417 CCGTTCCATAATTCTTGTCATGGTT 59.875 40.000 3.23 0.00 39.21 3.67
7605 8442 6.350110 CCGTTCCATAATTCTTGTCATGGTTT 60.350 38.462 3.23 0.00 39.21 3.27
7606 8443 7.090173 CGTTCCATAATTCTTGTCATGGTTTT 58.910 34.615 3.23 0.00 39.21 2.43
7607 8444 8.240682 CGTTCCATAATTCTTGTCATGGTTTTA 58.759 33.333 3.23 0.00 39.21 1.52
7608 8445 9.921637 GTTCCATAATTCTTGTCATGGTTTTAA 57.078 29.630 3.23 0.00 39.21 1.52
7641 8478 9.804758 TTTTAACTAAAACCACAACAAGTATGG 57.195 29.630 2.73 2.73 39.57 2.74
7642 8479 8.749026 TTAACTAAAACCACAACAAGTATGGA 57.251 30.769 9.66 0.00 36.94 3.41
7643 8480 7.648039 AACTAAAACCACAACAAGTATGGAA 57.352 32.000 9.66 0.00 36.94 3.53
7644 8481 7.034685 ACTAAAACCACAACAAGTATGGAAC 57.965 36.000 9.66 0.00 36.94 3.62
7695 8532 6.441924 AGATGATATTGTATCCCCCTGTACAG 59.558 42.308 16.34 16.34 32.87 2.74
7776 8613 8.700644 AGATGCTAAATAGTAAATACGCTTTCG 58.299 33.333 0.00 0.00 42.43 3.46
7801 8638 6.882678 GGAGTTAGTGCCCTTTTCTATTGTAA 59.117 38.462 0.00 0.00 0.00 2.41
7807 8644 6.152831 AGTGCCCTTTTCTATTGTAAATGACC 59.847 38.462 0.00 0.00 0.00 4.02
7834 8671 1.404583 GCAAGGTGGGCAAATGATCAC 60.405 52.381 0.00 0.00 0.00 3.06
7896 8773 5.620206 ACAGTACATCTGATGTTTTGTCCA 58.380 37.500 26.56 5.88 46.27 4.02
7897 8774 6.240894 ACAGTACATCTGATGTTTTGTCCAT 58.759 36.000 26.56 8.38 46.27 3.41
7910 8787 9.643693 GATGTTTTGTCCATTTGTTCATAGATT 57.356 29.630 0.00 0.00 0.00 2.40
7916 8793 5.300286 GTCCATTTGTTCATAGATTGGAGGG 59.700 44.000 0.00 0.00 0.00 4.30
8013 8890 9.014297 AGGTTTGACTATATCTTTTTGACTTGG 57.986 33.333 0.00 0.00 0.00 3.61
8084 8961 3.311322 CCAGTCTTCAGTTTGTTGCGTAA 59.689 43.478 0.00 0.00 0.00 3.18
8088 8965 5.813672 AGTCTTCAGTTTGTTGCGTAAACTA 59.186 36.000 11.02 0.00 44.20 2.24
8089 8966 6.018994 AGTCTTCAGTTTGTTGCGTAAACTAG 60.019 38.462 11.02 7.63 44.20 2.57
8090 8967 5.813672 TCTTCAGTTTGTTGCGTAAACTAGT 59.186 36.000 11.02 0.00 44.20 2.57
8091 8968 5.646467 TCAGTTTGTTGCGTAAACTAGTC 57.354 39.130 11.02 0.00 44.20 2.59
8093 8970 5.581479 TCAGTTTGTTGCGTAAACTAGTCAA 59.419 36.000 11.02 0.00 44.20 3.18
8094 8971 6.259167 TCAGTTTGTTGCGTAAACTAGTCAAT 59.741 34.615 11.02 0.00 44.20 2.57
8095 8972 6.573725 CAGTTTGTTGCGTAAACTAGTCAATC 59.426 38.462 11.02 0.00 44.20 2.67
8096 8973 6.259167 AGTTTGTTGCGTAAACTAGTCAATCA 59.741 34.615 10.03 0.00 44.19 2.57
8097 8974 5.839262 TGTTGCGTAAACTAGTCAATCAG 57.161 39.130 0.00 0.00 39.70 2.90
8098 8975 5.534407 TGTTGCGTAAACTAGTCAATCAGA 58.466 37.500 0.00 0.00 39.70 3.27
8134 9011 6.901081 AAGTATTTTGTTTTAGGCTGCTCT 57.099 33.333 0.00 0.00 0.00 4.09
8140 9017 3.141398 TGTTTTAGGCTGCTCTCAACAG 58.859 45.455 0.00 0.00 38.22 3.16
8181 9058 5.248640 CAACTGAGTCCATAACCATTCAGT 58.751 41.667 0.00 0.00 40.65 3.41
8183 9060 6.227298 ACTGAGTCCATAACCATTCAGTAG 57.773 41.667 3.34 0.00 38.47 2.57
8185 9062 4.716784 TGAGTCCATAACCATTCAGTAGCT 59.283 41.667 0.00 0.00 0.00 3.32
8197 9074 4.891992 TTCAGTAGCTGAGCCTTTTACT 57.108 40.909 0.00 0.00 41.75 2.24
8238 9115 8.371699 AGTTTGGAGAGTATTTCTATATCCAGC 58.628 37.037 0.00 0.00 35.87 4.85
8255 9132 2.331132 GCGCTGCTCTCTTTTGGCT 61.331 57.895 0.00 0.00 0.00 4.75
8266 9143 5.106908 GCTCTCTTTTGGCTGTGTACTTAAG 60.107 44.000 0.00 0.00 0.00 1.85
8321 9199 3.219281 TGGCTACCTTTTGGAGTGTTTC 58.781 45.455 0.00 0.00 44.07 2.78
8336 9214 0.321653 GTTTCGACATGGGTGCTCCT 60.322 55.000 4.53 0.00 36.20 3.69
8365 9245 7.255555 GCATGGTATGATATTTCAACACATGGA 60.256 37.037 18.99 0.00 34.96 3.41
8432 9347 5.695851 ACACTGCTATTTCTGAAACAAGG 57.304 39.130 4.73 0.00 0.00 3.61
8493 9408 4.096382 AGTGACGCAATCTTGTTCTTTTGT 59.904 37.500 0.00 0.00 0.00 2.83
8495 9410 4.797868 TGACGCAATCTTGTTCTTTTGTTG 59.202 37.500 0.00 0.00 0.00 3.33
8503 9418 7.972832 ATCTTGTTCTTTTGTTGTATCCGTA 57.027 32.000 0.00 0.00 0.00 4.02
8504 9419 7.416154 TCTTGTTCTTTTGTTGTATCCGTAG 57.584 36.000 0.00 0.00 0.00 3.51
8510 9425 7.534085 TCTTTTGTTGTATCCGTAGCATTAG 57.466 36.000 0.00 0.00 0.00 1.73
8511 9426 7.324935 TCTTTTGTTGTATCCGTAGCATTAGA 58.675 34.615 0.00 0.00 0.00 2.10
8637 9556 1.335324 GGCTGTCACTCACACATTTGC 60.335 52.381 0.00 0.00 0.00 3.68
8640 9559 1.334556 TGTCACTCACACATTTGCTGC 59.665 47.619 0.00 0.00 0.00 5.25
8687 9617 7.958053 TGCTTTTAGTTACCAGAACTAGAAC 57.042 36.000 0.00 0.00 34.58 3.01
8718 9648 9.985730 ATATCAAACAGAAATGTCACATTTGTT 57.014 25.926 20.68 16.23 0.00 2.83
8719 9649 7.522901 TCAAACAGAAATGTCACATTTGTTG 57.477 32.000 20.68 18.51 0.00 3.33
8720 9650 7.095910 TCAAACAGAAATGTCACATTTGTTGT 58.904 30.769 20.68 19.09 39.91 3.32
8722 9652 6.206395 ACAGAAATGTCACATTTGTTGTCA 57.794 33.333 20.68 0.00 36.00 3.58
8952 9882 9.669353 GTGCATTATTTAGGAACAGATACATTG 57.331 33.333 0.00 0.00 0.00 2.82
8963 9897 4.780815 ACAGATACATTGTACACATGGGG 58.219 43.478 16.95 0.00 0.00 4.96
9015 9950 6.317789 TGCACTGTAGAGGAGAAAATTTTG 57.682 37.500 8.47 0.00 0.00 2.44
9016 9951 6.061441 TGCACTGTAGAGGAGAAAATTTTGA 58.939 36.000 8.47 0.00 0.00 2.69
9017 9952 6.017109 TGCACTGTAGAGGAGAAAATTTTGAC 60.017 38.462 8.47 1.99 0.00 3.18
9057 10008 1.674441 CAAATCTGCCAGCATCGATGT 59.326 47.619 25.47 10.56 0.00 3.06
9058 10009 1.306148 AATCTGCCAGCATCGATGTG 58.694 50.000 25.47 20.25 0.00 3.21
9098 10053 0.756442 AGTTGTGGCTGCCAACATGT 60.756 50.000 25.23 10.69 43.61 3.21
9146 10121 1.964373 AGGCGGCTTTGTAACACGG 60.964 57.895 5.25 0.00 0.00 4.94
9168 10143 5.399013 GGCATTGGAAGTATTTGTGTGTAC 58.601 41.667 0.00 0.00 0.00 2.90
9185 10162 3.997021 GTGTACCAGGTTGAATCTCTGTG 59.003 47.826 0.00 0.00 0.00 3.66
9208 10185 2.623878 TTGTTCGTTGCAGGGAGTTA 57.376 45.000 0.00 0.00 0.00 2.24
9244 10221 1.135972 TCGAGCGCTTTTTCTTGCATC 60.136 47.619 13.26 0.00 0.00 3.91
9262 10239 0.468226 TCGTGCTTGGGAAACAGTCT 59.532 50.000 0.00 0.00 0.00 3.24
9266 10243 0.884704 GCTTGGGAAACAGTCTCGCA 60.885 55.000 0.00 0.00 34.29 5.10
9368 10350 4.502282 CGATTCGTGTCTAGTAGTACGTCT 59.498 45.833 20.68 13.43 37.74 4.18
9369 10351 5.683302 CGATTCGTGTCTAGTAGTACGTCTA 59.317 44.000 20.68 12.64 37.74 2.59
9372 10354 9.186323 GATTCGTGTCTAGTAGTACGTCTATAA 57.814 37.037 20.68 12.56 37.74 0.98
9423 10405 7.012138 CCTCCTATCTATATATACACGCACGTT 59.988 40.741 0.00 0.00 0.00 3.99
9474 10473 1.201647 TCGCTGGAAAACTAGACTCGG 59.798 52.381 0.00 0.00 0.00 4.63
9477 10476 2.864968 CTGGAAAACTAGACTCGGTCG 58.135 52.381 0.00 0.00 37.67 4.79
9484 10483 3.839051 ACTAGACTCGGTCGTAAAACC 57.161 47.619 0.00 0.00 37.67 3.27
9486 10485 2.428888 AGACTCGGTCGTAAAACCAC 57.571 50.000 0.00 0.00 39.43 4.16
9495 10494 4.033817 CGGTCGTAAAACCACTTGTGTTTA 59.966 41.667 0.00 0.00 39.43 2.01
9496 10495 5.447010 CGGTCGTAAAACCACTTGTGTTTAA 60.447 40.000 0.00 0.00 39.43 1.52
9510 10509 1.271488 TGTTTAACCCCCATCGTCCAC 60.271 52.381 0.00 0.00 0.00 4.02
9517 10516 1.320344 CCCCATCGTCCACTCGAGAA 61.320 60.000 21.68 0.64 43.00 2.87
9577 10577 5.243283 GTCACCTTCCTCGGTACATATACAT 59.757 44.000 0.00 0.00 34.94 2.29
9581 10581 2.751259 TCCTCGGTACATATACATCGGC 59.249 50.000 0.00 0.00 32.40 5.54
9585 10585 3.129813 TCGGTACATATACATCGGCATCC 59.870 47.826 0.00 0.00 32.40 3.51
9588 10588 5.488341 GGTACATATACATCGGCATCCTTT 58.512 41.667 0.00 0.00 32.40 3.11
9632 10632 4.083590 GGCATCTCTCTTCACTGTGTTTTC 60.084 45.833 7.79 0.00 0.00 2.29
9642 10642 2.113131 CTGTGTTTTCCCACGCCGAC 62.113 60.000 0.00 0.00 38.20 4.79
9660 10682 1.126846 GACGCGTCCATCTGTTCTTTG 59.873 52.381 28.61 0.00 0.00 2.77
9663 10685 2.032030 CGCGTCCATCTGTTCTTTGTTT 60.032 45.455 0.00 0.00 0.00 2.83
9664 10686 3.555518 GCGTCCATCTGTTCTTTGTTTC 58.444 45.455 0.00 0.00 0.00 2.78
9729 10751 2.563798 ATTGTTGGTGCTGGTGCCG 61.564 57.895 0.00 0.00 38.71 5.69
9806 10828 4.276926 GGAAAGTATGGAGCCTGCAATTAG 59.723 45.833 0.00 0.00 0.00 1.73
9875 10903 0.530288 TGCCTTGCGCCCTTTAATTC 59.470 50.000 4.18 0.00 36.24 2.17
9880 10908 0.035820 TGCGCCCTTTAATTCCGACT 60.036 50.000 4.18 0.00 0.00 4.18
9890 10918 5.299279 CCTTTAATTCCGACTGGCATATTGT 59.701 40.000 0.00 0.00 34.14 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.565674 AAAAGAAAGGGCCCCCAAGA 59.434 50.000 21.43 0.00 38.92 3.02
1 2 0.686789 CAAAAGAAAGGGCCCCCAAG 59.313 55.000 21.43 0.00 38.92 3.61
2 3 0.766288 CCAAAAGAAAGGGCCCCCAA 60.766 55.000 21.43 0.00 38.92 4.12
3 4 1.152139 CCAAAAGAAAGGGCCCCCA 60.152 57.895 21.43 0.00 38.92 4.96
4 5 1.152118 ACCAAAAGAAAGGGCCCCC 60.152 57.895 21.43 8.44 0.00 5.40
5 6 0.471022 TCACCAAAAGAAAGGGCCCC 60.471 55.000 21.43 2.42 0.00 5.80
6 7 0.969149 CTCACCAAAAGAAAGGGCCC 59.031 55.000 16.46 16.46 0.00 5.80
7 8 0.318441 GCTCACCAAAAGAAAGGGCC 59.682 55.000 0.00 0.00 0.00 5.80
8 9 1.332195 AGCTCACCAAAAGAAAGGGC 58.668 50.000 0.00 0.00 0.00 5.19
9 10 2.036346 CCAAGCTCACCAAAAGAAAGGG 59.964 50.000 0.00 0.00 0.00 3.95
10 11 2.546584 GCCAAGCTCACCAAAAGAAAGG 60.547 50.000 0.00 0.00 0.00 3.11
11 12 2.363359 AGCCAAGCTCACCAAAAGAAAG 59.637 45.455 0.00 0.00 30.62 2.62
12 13 2.387757 AGCCAAGCTCACCAAAAGAAA 58.612 42.857 0.00 0.00 30.62 2.52
13 14 2.071778 AGCCAAGCTCACCAAAAGAA 57.928 45.000 0.00 0.00 30.62 2.52
14 15 3.827505 AGCCAAGCTCACCAAAAGA 57.172 47.368 0.00 0.00 30.62 2.52
44 45 3.365265 GCACCTCCGCCAACTTGG 61.365 66.667 3.10 3.10 41.55 3.61
45 46 3.726517 CGCACCTCCGCCAACTTG 61.727 66.667 0.00 0.00 0.00 3.16
58 59 4.729798 GTTACAACGCCGCCGCAC 62.730 66.667 0.00 0.00 38.22 5.34
59 60 4.973055 AGTTACAACGCCGCCGCA 62.973 61.111 0.00 0.00 38.22 5.69
60 61 4.143363 GAGTTACAACGCCGCCGC 62.143 66.667 0.00 0.00 38.22 6.53
61 62 1.562575 AAAGAGTTACAACGCCGCCG 61.563 55.000 0.00 0.00 41.14 6.46
62 63 0.589708 AAAAGAGTTACAACGCCGCC 59.410 50.000 0.00 0.00 0.00 6.13
63 64 2.394545 AAAAAGAGTTACAACGCCGC 57.605 45.000 0.00 0.00 0.00 6.53
91 92 1.035139 CATCCTTACCATGGCCAAGC 58.965 55.000 10.96 0.00 0.00 4.01
92 93 2.301346 GTCATCCTTACCATGGCCAAG 58.699 52.381 10.96 15.18 0.00 3.61
93 94 1.638070 TGTCATCCTTACCATGGCCAA 59.362 47.619 10.96 5.36 0.00 4.52
94 95 1.294041 TGTCATCCTTACCATGGCCA 58.706 50.000 13.04 8.56 0.00 5.36
95 96 2.435372 TTGTCATCCTTACCATGGCC 57.565 50.000 13.04 0.00 0.00 5.36
96 97 5.343307 AAATTTGTCATCCTTACCATGGC 57.657 39.130 13.04 0.00 0.00 4.40
97 98 7.385267 TGAAAAATTTGTCATCCTTACCATGG 58.615 34.615 11.19 11.19 0.00 3.66
98 99 7.063780 GCTGAAAAATTTGTCATCCTTACCATG 59.936 37.037 11.50 0.00 0.00 3.66
99 100 7.099120 GCTGAAAAATTTGTCATCCTTACCAT 58.901 34.615 11.50 0.00 0.00 3.55
100 101 6.041409 TGCTGAAAAATTTGTCATCCTTACCA 59.959 34.615 11.50 0.00 0.00 3.25
101 102 6.454795 TGCTGAAAAATTTGTCATCCTTACC 58.545 36.000 11.50 0.00 0.00 2.85
102 103 7.437862 TGTTGCTGAAAAATTTGTCATCCTTAC 59.562 33.333 11.50 6.82 0.00 2.34
103 104 7.495901 TGTTGCTGAAAAATTTGTCATCCTTA 58.504 30.769 11.50 0.00 0.00 2.69
104 105 6.347696 TGTTGCTGAAAAATTTGTCATCCTT 58.652 32.000 11.50 0.00 0.00 3.36
105 106 5.916318 TGTTGCTGAAAAATTTGTCATCCT 58.084 33.333 11.50 0.00 0.00 3.24
106 107 6.400303 CGATGTTGCTGAAAAATTTGTCATCC 60.400 38.462 11.50 6.82 0.00 3.51
107 108 6.363088 TCGATGTTGCTGAAAAATTTGTCATC 59.637 34.615 11.50 8.27 0.00 2.92
108 109 6.215121 TCGATGTTGCTGAAAAATTTGTCAT 58.785 32.000 11.50 0.00 0.00 3.06
109 110 5.586339 TCGATGTTGCTGAAAAATTTGTCA 58.414 33.333 10.64 10.64 0.00 3.58
110 111 5.687285 ACTCGATGTTGCTGAAAAATTTGTC 59.313 36.000 1.01 1.01 0.00 3.18
111 112 5.591099 ACTCGATGTTGCTGAAAAATTTGT 58.409 33.333 0.00 0.00 0.00 2.83
112 113 6.515043 AACTCGATGTTGCTGAAAAATTTG 57.485 33.333 0.00 0.00 37.52 2.32
125 126 1.611977 TGACTCCGTCAACTCGATGTT 59.388 47.619 0.00 0.00 39.78 2.71
126 127 1.068472 GTGACTCCGTCAACTCGATGT 60.068 52.381 0.00 0.00 44.49 3.06
127 128 1.618861 GTGACTCCGTCAACTCGATG 58.381 55.000 0.00 0.00 44.49 3.84
128 129 0.168348 CGTGACTCCGTCAACTCGAT 59.832 55.000 0.00 0.00 44.49 3.59
129 130 0.881600 TCGTGACTCCGTCAACTCGA 60.882 55.000 0.00 1.71 44.49 4.04
130 131 0.040692 TTCGTGACTCCGTCAACTCG 60.041 55.000 0.00 0.00 44.49 4.18
131 132 1.666311 CCTTCGTGACTCCGTCAACTC 60.666 57.143 0.00 0.00 44.49 3.01
132 133 0.314302 CCTTCGTGACTCCGTCAACT 59.686 55.000 0.00 0.00 44.49 3.16
133 134 1.282930 GCCTTCGTGACTCCGTCAAC 61.283 60.000 0.00 0.00 44.49 3.18
134 135 1.006571 GCCTTCGTGACTCCGTCAA 60.007 57.895 0.00 0.00 44.49 3.18
135 136 2.649034 GCCTTCGTGACTCCGTCA 59.351 61.111 0.00 0.00 40.50 4.35
136 137 2.504244 CGCCTTCGTGACTCCGTC 60.504 66.667 0.00 0.00 0.00 4.79
146 147 1.281656 GGAACCACAAACGCCTTCG 59.718 57.895 0.00 0.00 42.43 3.79
147 148 0.741915 TTGGAACCACAAACGCCTTC 59.258 50.000 0.00 0.00 0.00 3.46
148 149 0.744281 CTTGGAACCACAAACGCCTT 59.256 50.000 0.00 0.00 0.00 4.35
149 150 1.734388 GCTTGGAACCACAAACGCCT 61.734 55.000 0.00 0.00 0.00 5.52
150 151 1.299850 GCTTGGAACCACAAACGCC 60.300 57.895 0.00 0.00 0.00 5.68
151 152 1.299850 GGCTTGGAACCACAAACGC 60.300 57.895 0.00 0.00 0.00 4.84
152 153 2.111162 TGGCTTGGAACCACAAACG 58.889 52.632 0.00 0.00 30.29 3.60
158 159 0.178992 CTTGGAGTGGCTTGGAACCA 60.179 55.000 0.00 0.00 33.84 3.67
159 160 1.527433 GCTTGGAGTGGCTTGGAACC 61.527 60.000 0.00 0.00 0.00 3.62
160 161 0.538287 AGCTTGGAGTGGCTTGGAAC 60.538 55.000 0.00 0.00 34.96 3.62
161 162 0.185901 AAGCTTGGAGTGGCTTGGAA 59.814 50.000 0.00 0.00 45.49 3.53
162 163 1.846261 AAGCTTGGAGTGGCTTGGA 59.154 52.632 0.00 0.00 45.49 3.53
163 164 4.507969 AAGCTTGGAGTGGCTTGG 57.492 55.556 0.00 0.00 45.49 3.61
174 175 1.205064 CACGTCTTCGCCAAGCTTG 59.795 57.895 19.93 19.93 41.18 4.01
175 176 1.227556 ACACGTCTTCGCCAAGCTT 60.228 52.632 0.00 0.00 41.18 3.74
176 177 1.956170 CACACGTCTTCGCCAAGCT 60.956 57.895 0.00 0.00 41.18 3.74
177 178 2.551270 CACACGTCTTCGCCAAGC 59.449 61.111 0.00 0.00 41.18 4.01
178 179 2.317609 CCCACACGTCTTCGCCAAG 61.318 63.158 0.00 0.00 41.18 3.61
179 180 2.280524 CCCACACGTCTTCGCCAA 60.281 61.111 0.00 0.00 41.18 4.52
180 181 4.308458 CCCCACACGTCTTCGCCA 62.308 66.667 0.00 0.00 41.18 5.69
181 182 3.819877 AACCCCACACGTCTTCGCC 62.820 63.158 0.00 0.00 41.18 5.54
182 183 2.280592 AACCCCACACGTCTTCGC 60.281 61.111 0.00 0.00 41.18 4.70
183 184 2.604174 GCAACCCCACACGTCTTCG 61.604 63.158 0.00 0.00 43.34 3.79
189 190 2.668212 ACGATGCAACCCCACACG 60.668 61.111 0.00 0.00 0.00 4.49
196 197 2.871427 GATCCGCGACGATGCAACC 61.871 63.158 8.23 0.00 34.15 3.77
199 200 3.832492 TGGATCCGCGACGATGCA 61.832 61.111 8.23 11.87 38.15 3.96
209 210 3.518998 AGGAGTCGCGTGGATCCG 61.519 66.667 5.77 0.00 36.91 4.18
225 226 0.375454 CTCGACGTAGCTCCACTCAG 59.625 60.000 0.00 0.00 0.00 3.35
227 228 0.743701 TCCTCGACGTAGCTCCACTC 60.744 60.000 0.00 0.00 0.00 3.51
230 231 0.180642 AGATCCTCGACGTAGCTCCA 59.819 55.000 0.00 0.00 0.00 3.86
236 237 1.400846 GTCAAGCAGATCCTCGACGTA 59.599 52.381 0.00 0.00 0.00 3.57
240 241 0.735471 CGAGTCAAGCAGATCCTCGA 59.265 55.000 8.95 0.00 42.34 4.04
249 250 0.601046 CACCAAGCTCGAGTCAAGCA 60.601 55.000 15.13 0.00 42.35 3.91
283 286 3.872728 TGGATCCTCGACGTCGCG 61.873 66.667 32.19 26.29 39.60 5.87
291 294 0.312416 GGAGTCATCGTGGATCCTCG 59.688 60.000 26.43 26.43 0.00 4.63
322 325 1.939785 GTCGCTACTCCGCACATCG 60.940 63.158 0.00 0.00 38.08 3.84
348 351 1.226717 GCTTAGGAGTCGCGTGGAG 60.227 63.158 5.77 0.00 0.00 3.86
352 355 2.749044 TCCGCTTAGGAGTCGCGT 60.749 61.111 5.77 0.00 45.98 6.01
361 364 1.268794 CCTCGATGTCACTCCGCTTAG 60.269 57.143 0.00 0.00 0.00 2.18
371 374 1.476488 TCAAGCGAATCCTCGATGTCA 59.524 47.619 0.00 0.00 44.40 3.58
403 406 0.103208 CGCCTTAGACTCGCCTTCAT 59.897 55.000 0.00 0.00 0.00 2.57
413 416 1.227002 CCTCGAAGGCGCCTTAGAC 60.227 63.158 38.22 27.01 36.26 2.59
503 507 1.798223 CGCCTTGTGAAAAGTCATCGA 59.202 47.619 0.00 0.00 35.80 3.59
535 545 1.128507 CATCAACATTGGTGACGACCG 59.871 52.381 6.53 0.00 46.62 4.79
536 546 2.151202 ACATCAACATTGGTGACGACC 58.849 47.619 6.53 0.00 41.81 4.79
537 547 3.249799 TCAACATCAACATTGGTGACGAC 59.750 43.478 6.53 0.00 41.81 4.34
539 549 3.894782 TCAACATCAACATTGGTGACG 57.105 42.857 6.53 0.42 41.81 4.35
540 550 6.900568 TTTTTCAACATCAACATTGGTGAC 57.099 33.333 6.53 0.00 40.38 3.67
541 551 7.270779 TGATTTTTCAACATCAACATTGGTGA 58.729 30.769 11.79 6.89 41.81 4.02
542 552 7.479897 TGATTTTTCAACATCAACATTGGTG 57.520 32.000 3.27 3.27 44.73 4.17
590 600 4.159879 ACCTACTAATATCTACCATGCCGC 59.840 45.833 0.00 0.00 0.00 6.53
593 603 5.720041 TCCCACCTACTAATATCTACCATGC 59.280 44.000 0.00 0.00 0.00 4.06
603 614 3.503363 CGTACGCATCCCACCTACTAATA 59.497 47.826 0.52 0.00 0.00 0.98
646 657 3.987868 TGTCATTTTGTCGAGTGTAGAGC 59.012 43.478 0.00 0.00 0.00 4.09
697 708 1.670811 CACGCTCTCACAACAAAAGGT 59.329 47.619 0.00 0.00 0.00 3.50
702 713 0.464036 AGGTCACGCTCTCACAACAA 59.536 50.000 0.00 0.00 0.00 2.83
755 769 5.680619 CCCTATTAGGCACACAGAAATGTA 58.319 41.667 4.01 0.00 32.73 2.29
794 808 7.302524 GTTTGAATACATGCTTTCCGAACTTA 58.697 34.615 0.00 0.00 0.00 2.24
802 816 4.553429 CGAACGGTTTGAATACATGCTTTC 59.447 41.667 1.69 0.00 0.00 2.62
862 876 2.738521 CACGGCCTCACACCTTCG 60.739 66.667 0.00 0.00 0.00 3.79
942 959 2.103263 CGAGAGAGGGTTTGGGATTAGG 59.897 54.545 0.00 0.00 0.00 2.69
960 977 3.115556 CGGAGGAAGAGGAGCGAG 58.884 66.667 0.00 0.00 0.00 5.03
961 978 3.141488 GCGGAGGAAGAGGAGCGA 61.141 66.667 0.00 0.00 0.00 4.93
962 979 3.132481 GAGCGGAGGAAGAGGAGCG 62.132 68.421 0.00 0.00 0.00 5.03
963 980 2.791868 GGAGCGGAGGAAGAGGAGC 61.792 68.421 0.00 0.00 0.00 4.70
976 993 2.045926 CAACCTGGGAAGGGAGCG 60.046 66.667 0.00 0.00 0.00 5.03
1215 1232 3.222855 ATCCTCTCCAGCCTCGCG 61.223 66.667 0.00 0.00 0.00 5.87
1374 1391 2.692368 ACCTGGACCATGCCGGAT 60.692 61.111 5.05 0.00 38.63 4.18
1405 1422 0.673437 ACCAAACCAACGGCATTGAG 59.327 50.000 0.00 0.00 41.23 3.02
1454 1471 5.706369 AGCTAAGAGATGATGAATTGATGCC 59.294 40.000 0.00 0.00 0.00 4.40
1616 1759 7.115378 CACTCAAAAATGCAGTATCTTGTTTCC 59.885 37.037 0.00 0.00 0.00 3.13
1622 1765 9.199982 CAAAATCACTCAAAAATGCAGTATCTT 57.800 29.630 0.00 0.00 0.00 2.40
1635 1786 6.272318 CAAACACTAGCCAAAATCACTCAAA 58.728 36.000 0.00 0.00 0.00 2.69
1637 1788 4.261572 GCAAACACTAGCCAAAATCACTCA 60.262 41.667 0.00 0.00 0.00 3.41
1683 1842 2.617308 TGCGTCAGTATAGAGTACTGCC 59.383 50.000 0.00 0.00 43.30 4.85
1775 1935 9.996554 ACCATAAACATCGATAAATATGACAGA 57.003 29.630 18.06 0.00 0.00 3.41
1789 1949 9.566530 TTTGAACAATAATGACCATAAACATCG 57.433 29.630 0.00 0.00 0.00 3.84
1822 1982 2.191128 AACACTGGCTTGAGATCACC 57.809 50.000 0.00 0.00 0.00 4.02
1856 2016 2.433318 GCAGAGTCGTCACCTGCC 60.433 66.667 13.13 0.79 45.38 4.85
1968 2128 4.301628 CAGTGCTCATATCTGCGTTGATA 58.698 43.478 2.87 2.87 33.99 2.15
1974 2134 0.602106 CCCCAGTGCTCATATCTGCG 60.602 60.000 0.00 0.00 0.00 5.18
2097 2257 7.544622 TGTAGCAGTAGGTAGTAACATTTCTG 58.455 38.462 0.00 0.00 0.00 3.02
2120 2280 5.273208 ACCTACATCCTACTGTTGATCTGT 58.727 41.667 0.00 0.00 0.00 3.41
2125 2285 6.295688 GGAGAAAACCTACATCCTACTGTTGA 60.296 42.308 0.00 0.00 0.00 3.18
2136 2296 4.807643 GCAGGTCTTGGAGAAAACCTACAT 60.808 45.833 0.00 0.00 40.13 2.29
2159 2319 8.091449 AGAAAGATAAGAGAGTAACAACACAGG 58.909 37.037 0.00 0.00 0.00 4.00
2229 2389 3.565307 GCCTGATCCCATTTCCATTACA 58.435 45.455 0.00 0.00 0.00 2.41
2230 2390 2.893489 GGCCTGATCCCATTTCCATTAC 59.107 50.000 0.00 0.00 0.00 1.89
2286 2446 6.207417 TGGTTTCTCTCCTTTTTGCTAATCTG 59.793 38.462 0.00 0.00 0.00 2.90
2293 2453 6.315393 TCGTATATGGTTTCTCTCCTTTTTGC 59.685 38.462 0.00 0.00 0.00 3.68
2421 2581 3.281727 AGGTGCGAACATGGTATCATT 57.718 42.857 0.00 0.00 0.00 2.57
2613 2773 5.805486 GTCCAACAAAACTTTCTTCCAAGTC 59.195 40.000 0.00 0.00 35.87 3.01
2695 2861 5.804639 TGTACAACCTAATCACATTCTGCT 58.195 37.500 0.00 0.00 0.00 4.24
2848 3014 3.615496 GTGATGAATTGTGATGCCTTTGC 59.385 43.478 0.00 0.00 38.26 3.68
2973 3151 7.113684 CGCTCTAACGAGAAGATACCATAAAAG 59.886 40.741 0.00 0.00 39.74 2.27
3015 3193 7.170965 ACCTCCATCATGATACCAATGAATAC 58.829 38.462 8.15 0.00 0.00 1.89
3099 3526 8.981724 TGCGGTATGATATTCAAATAGACTAC 57.018 34.615 0.00 0.00 0.00 2.73
3140 3570 9.498307 CCATAAGTCATCGTACCAAAATTTTAC 57.502 33.333 2.44 0.00 0.00 2.01
3142 3572 8.117813 ACCATAAGTCATCGTACCAAAATTTT 57.882 30.769 0.00 0.00 0.00 1.82
3143 3573 7.696992 ACCATAAGTCATCGTACCAAAATTT 57.303 32.000 0.00 0.00 0.00 1.82
3146 3576 8.618702 TTTTACCATAAGTCATCGTACCAAAA 57.381 30.769 0.00 0.00 0.00 2.44
3147 3577 8.795842 ATTTTACCATAAGTCATCGTACCAAA 57.204 30.769 0.00 0.00 0.00 3.28
3148 3578 8.795842 AATTTTACCATAAGTCATCGTACCAA 57.204 30.769 0.00 0.00 0.00 3.67
3150 3580 9.498307 CAAAATTTTACCATAAGTCATCGTACC 57.502 33.333 2.44 0.00 0.00 3.34
3223 3658 6.531503 TTCTATCTAGAGTGAAGTTGTGGG 57.468 41.667 0.00 0.00 33.21 4.61
3376 3811 8.669243 GTTTAAAATGGTGGAAATTGAACACAA 58.331 29.630 8.93 0.00 36.87 3.33
3379 3814 8.792830 TTGTTTAAAATGGTGGAAATTGAACA 57.207 26.923 0.00 0.00 0.00 3.18
3401 3836 4.832266 TCATACAAAAAGGGCACTCATTGT 59.168 37.500 19.50 19.50 38.32 2.71
3532 3967 5.271598 ACAAAATCATGCCTATCCTCCAAA 58.728 37.500 0.00 0.00 0.00 3.28
3569 4004 5.005586 CCAAACAACAGCACAAAATGTACAG 59.994 40.000 0.33 0.00 0.00 2.74
3571 4006 4.260172 GCCAAACAACAGCACAAAATGTAC 60.260 41.667 0.00 0.00 0.00 2.90
3574 4009 2.937799 AGCCAAACAACAGCACAAAATG 59.062 40.909 0.00 0.00 0.00 2.32
3604 4039 8.319057 TGACAGGCATATATAGGTAAATAGGG 57.681 38.462 0.00 0.00 0.00 3.53
3616 4051 9.537852 ACCATATTGAAAATGACAGGCATATAT 57.462 29.630 0.00 0.00 35.78 0.86
3682 4117 1.427819 CGGTCGGCCAATTAAGCAC 59.572 57.895 6.96 0.00 34.09 4.40
3753 4208 2.486548 GCTGTTAGACAAGTGGGTGGAA 60.487 50.000 0.00 0.00 0.00 3.53
3776 4231 4.669206 ATGGCCGATGCATAAAAATTGA 57.331 36.364 0.00 0.00 40.13 2.57
3792 4247 4.535526 ACAACCAGTAATGAAAATGGCC 57.464 40.909 0.00 0.00 36.21 5.36
3810 4541 9.802039 GGTCATATTTATGTCCCCTTTATACAA 57.198 33.333 3.34 0.00 36.36 2.41
3891 4622 5.657745 TGCATCTATTTTGACCAATCCACAT 59.342 36.000 0.00 0.00 0.00 3.21
3899 4630 5.414144 TGAATCGTTGCATCTATTTTGACCA 59.586 36.000 0.00 0.00 0.00 4.02
3933 4664 3.837213 ACACTAATGATTGCACTGCAC 57.163 42.857 2.26 0.00 38.71 4.57
3945 4676 6.949352 ATTGCAAGGGAAGATACACTAATG 57.051 37.500 4.94 0.00 0.00 1.90
4173 4905 1.133513 AGCAAACAGAATGGTGTGGGA 60.134 47.619 0.00 0.00 27.21 4.37
4207 4939 8.650714 GGCATCAGATCTTTGAAAATTACAAAC 58.349 33.333 6.61 0.42 34.30 2.93
4219 4951 3.887110 TGGCATTAGGCATCAGATCTTTG 59.113 43.478 0.00 0.00 46.46 2.77
4297 5037 3.985877 CTGGAAGGTGATTGCGCA 58.014 55.556 5.66 5.66 30.42 6.09
4320 5060 9.934190 GAAAAACACAGCAAATTAATCACATTT 57.066 25.926 0.00 0.00 0.00 2.32
4391 5131 2.158608 AGCCAAGTAGCCAACTCAACTT 60.159 45.455 0.00 0.00 37.50 2.66
4569 5360 2.802816 GCATAATAAGTCTGCACCTCCG 59.197 50.000 0.00 0.00 35.96 4.63
4986 5807 6.810182 GCTTGTGCTCTGATTGATTTGTATTT 59.190 34.615 0.00 0.00 36.03 1.40
5083 5907 0.676151 CCAGGCAGCTTTCCAGAGAC 60.676 60.000 4.72 0.00 0.00 3.36
5113 5937 5.152097 CAATAAAGCAGCTCAGTGAACAAG 58.848 41.667 0.00 0.00 0.00 3.16
5135 5959 1.153107 CATCCCGGAAGCATCTGCA 60.153 57.895 0.73 0.00 45.16 4.41
5373 6197 9.338622 CCCGTGACCTCTTTAGAATTATAAAAT 57.661 33.333 6.71 0.00 0.00 1.82
5374 6198 7.281549 GCCCGTGACCTCTTTAGAATTATAAAA 59.718 37.037 6.71 0.00 0.00 1.52
5404 6228 2.813061 ACAAAATGAGCACACAGTTGC 58.187 42.857 0.00 0.82 43.34 4.17
5412 6236 4.853743 GCAGCTAAACTACAAAATGAGCAC 59.146 41.667 0.00 0.00 0.00 4.40
5684 6508 7.422465 AGGCCATTCTGCAAAGATATTAAAA 57.578 32.000 5.01 0.00 0.00 1.52
5765 6589 3.217626 GAGTAGCCCCTCATCCAAAATG 58.782 50.000 0.00 0.00 0.00 2.32
5766 6590 2.175715 GGAGTAGCCCCTCATCCAAAAT 59.824 50.000 2.98 0.00 32.91 1.82
5813 6637 3.669251 ATTAGAGTAGATGGCTTCCGC 57.331 47.619 0.00 0.00 0.00 5.54
5939 6766 9.474313 AGGGAGAAAATATGCAAGTAATAAACA 57.526 29.630 0.00 0.00 0.00 2.83
6212 7040 4.215613 CCAGGCCTTGTAGTTTTGTCTAAC 59.784 45.833 0.00 0.00 0.00 2.34
6228 7056 0.259647 TATCATTTGCTGCCAGGCCT 59.740 50.000 9.64 0.00 0.00 5.19
6309 7137 4.989044 TGTGTTCTTTCTTTTCGGGTTTC 58.011 39.130 0.00 0.00 0.00 2.78
6331 7159 6.815142 GCTTTTGCATCTAAGATTTCCAACAT 59.185 34.615 7.65 0.00 46.58 2.71
6390 7218 5.105997 GCCAAGAACTTGATTAGCTGTTGAT 60.106 40.000 14.99 0.00 42.93 2.57
6406 7234 5.453567 AACAATCTTAACCTGCCAAGAAC 57.546 39.130 0.00 0.00 34.61 3.01
6559 7387 8.224437 GTGCTGACTACAGAAAGAAATAGAAAC 58.776 37.037 0.00 0.00 46.03 2.78
6611 7439 6.528537 TCACTATTCCATTCAAACATTGGG 57.471 37.500 0.00 0.00 0.00 4.12
6635 7463 0.970427 TGACCTCATACCGCTGCTCA 60.970 55.000 0.00 0.00 0.00 4.26
6644 7472 7.964604 ACAAACTAAAAGACTGACCTCATAC 57.035 36.000 0.00 0.00 0.00 2.39
6731 7559 4.041691 ACACACACAGGCTTAAGGAATACT 59.958 41.667 4.29 0.00 0.00 2.12
6789 7617 4.645535 TCAGCAAATAACTGCAGTCTCTT 58.354 39.130 21.95 11.05 45.18 2.85
6808 7637 6.129009 GCAACTAAACAGCAATCAACATTCAG 60.129 38.462 0.00 0.00 0.00 3.02
6847 7676 2.289547 ACCAAGGTTCATCGTTTGTTCG 59.710 45.455 0.00 0.00 0.00 3.95
6856 7685 8.418597 TGTATCCTACTATACCAAGGTTCATC 57.581 38.462 0.00 0.00 32.36 2.92
6857 7686 8.974292 ATGTATCCTACTATACCAAGGTTCAT 57.026 34.615 0.00 0.00 32.36 2.57
6955 7785 5.592104 AACATGTGTCGTACCAGATCATA 57.408 39.130 0.00 0.00 0.00 2.15
6967 7797 7.899841 CACATATCTCTTTGTAAACATGTGTCG 59.100 37.037 0.00 0.00 38.01 4.35
7091 7924 8.220559 ACTGTTCAGTAGAATATTTGGGCATAT 58.779 33.333 3.47 0.00 35.92 1.78
7140 7973 6.080406 CAGGCTCTTCTGTTCGTAATTTTTC 58.920 40.000 0.00 0.00 0.00 2.29
7145 7978 2.567615 ACCAGGCTCTTCTGTTCGTAAT 59.432 45.455 0.00 0.00 33.14 1.89
7149 7982 1.151668 CAACCAGGCTCTTCTGTTCG 58.848 55.000 0.00 0.00 33.14 3.95
7201 8034 9.507329 TGAGAAAACAGAAAATAAGATACAGCT 57.493 29.630 0.00 0.00 0.00 4.24
7202 8035 9.766277 CTGAGAAAACAGAAAATAAGATACAGC 57.234 33.333 0.00 0.00 39.94 4.40
7235 8068 4.036852 CCTGTGTTTGAAAGGGAGAAGAAC 59.963 45.833 0.00 0.00 0.00 3.01
7236 8069 4.207165 CCTGTGTTTGAAAGGGAGAAGAA 58.793 43.478 0.00 0.00 0.00 2.52
7238 8071 2.294512 GCCTGTGTTTGAAAGGGAGAAG 59.705 50.000 0.00 0.00 0.00 2.85
7239 8072 2.091885 AGCCTGTGTTTGAAAGGGAGAA 60.092 45.455 0.00 0.00 0.00 2.87
7241 8074 1.882623 GAGCCTGTGTTTGAAAGGGAG 59.117 52.381 0.00 0.00 0.00 4.30
7242 8075 1.494721 AGAGCCTGTGTTTGAAAGGGA 59.505 47.619 0.00 0.00 0.00 4.20
7243 8076 1.986882 AGAGCCTGTGTTTGAAAGGG 58.013 50.000 0.00 0.00 0.00 3.95
7519 8353 3.725740 CGTTTCATGTCTTGTTTGTCTGC 59.274 43.478 0.00 0.00 0.00 4.26
7557 8391 6.700520 CGGAGGGAGTACTAAATTATGTTGAC 59.299 42.308 0.00 0.00 0.00 3.18
7573 8410 3.385115 AGAATTATGGAACGGAGGGAGT 58.615 45.455 0.00 0.00 0.00 3.85
7574 8411 4.130118 CAAGAATTATGGAACGGAGGGAG 58.870 47.826 0.00 0.00 0.00 4.30
7575 8412 3.521937 ACAAGAATTATGGAACGGAGGGA 59.478 43.478 0.00 0.00 0.00 4.20
7576 8413 3.877508 GACAAGAATTATGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
7577 8414 4.513442 TGACAAGAATTATGGAACGGAGG 58.487 43.478 0.00 0.00 0.00 4.30
7578 8415 5.008019 CCATGACAAGAATTATGGAACGGAG 59.992 44.000 0.00 0.00 42.05 4.63
7579 8416 4.881273 CCATGACAAGAATTATGGAACGGA 59.119 41.667 0.00 0.00 42.05 4.69
7580 8417 4.640201 ACCATGACAAGAATTATGGAACGG 59.360 41.667 9.22 1.46 42.05 4.44
7581 8418 5.818136 ACCATGACAAGAATTATGGAACG 57.182 39.130 9.22 0.00 42.05 3.95
7582 8419 9.921637 TTAAAACCATGACAAGAATTATGGAAC 57.078 29.630 9.22 0.00 42.05 3.62
7615 8452 9.804758 CCATACTTGTTGTGGTTTTAGTTAAAA 57.195 29.630 0.00 0.00 31.71 1.52
7616 8453 9.186837 TCCATACTTGTTGTGGTTTTAGTTAAA 57.813 29.630 0.00 0.00 37.73 1.52
7617 8454 8.749026 TCCATACTTGTTGTGGTTTTAGTTAA 57.251 30.769 0.00 0.00 37.73 2.01
7618 8455 8.623030 GTTCCATACTTGTTGTGGTTTTAGTTA 58.377 33.333 0.00 0.00 37.73 2.24
7619 8456 7.122948 TGTTCCATACTTGTTGTGGTTTTAGTT 59.877 33.333 0.00 0.00 37.73 2.24
7620 8457 6.603997 TGTTCCATACTTGTTGTGGTTTTAGT 59.396 34.615 0.00 0.00 37.73 2.24
7621 8458 7.012894 TCTGTTCCATACTTGTTGTGGTTTTAG 59.987 37.037 0.00 0.00 37.73 1.85
7622 8459 6.829298 TCTGTTCCATACTTGTTGTGGTTTTA 59.171 34.615 0.00 0.00 37.73 1.52
7623 8460 5.654650 TCTGTTCCATACTTGTTGTGGTTTT 59.345 36.000 0.00 0.00 37.73 2.43
7624 8461 5.197451 TCTGTTCCATACTTGTTGTGGTTT 58.803 37.500 0.00 0.00 37.73 3.27
7625 8462 4.787551 TCTGTTCCATACTTGTTGTGGTT 58.212 39.130 0.00 0.00 37.73 3.67
7626 8463 4.389374 CTCTGTTCCATACTTGTTGTGGT 58.611 43.478 0.00 0.00 37.73 4.16
7627 8464 3.753272 CCTCTGTTCCATACTTGTTGTGG 59.247 47.826 0.00 0.00 37.85 4.17
7628 8465 3.753272 CCCTCTGTTCCATACTTGTTGTG 59.247 47.826 0.00 0.00 0.00 3.33
7629 8466 3.650942 TCCCTCTGTTCCATACTTGTTGT 59.349 43.478 0.00 0.00 0.00 3.32
7630 8467 4.256920 CTCCCTCTGTTCCATACTTGTTG 58.743 47.826 0.00 0.00 0.00 3.33
7631 8468 3.910627 ACTCCCTCTGTTCCATACTTGTT 59.089 43.478 0.00 0.00 0.00 2.83
7632 8469 3.521727 ACTCCCTCTGTTCCATACTTGT 58.478 45.455 0.00 0.00 0.00 3.16
7633 8470 4.712337 ACTACTCCCTCTGTTCCATACTTG 59.288 45.833 0.00 0.00 0.00 3.16
7634 8471 4.949121 ACTACTCCCTCTGTTCCATACTT 58.051 43.478 0.00 0.00 0.00 2.24
7635 8472 4.611564 ACTACTCCCTCTGTTCCATACT 57.388 45.455 0.00 0.00 0.00 2.12
7636 8473 5.678955 AAACTACTCCCTCTGTTCCATAC 57.321 43.478 0.00 0.00 0.00 2.39
7637 8474 7.635089 GCATAAAACTACTCCCTCTGTTCCATA 60.635 40.741 0.00 0.00 0.00 2.74
7638 8475 6.653989 CATAAAACTACTCCCTCTGTTCCAT 58.346 40.000 0.00 0.00 0.00 3.41
7639 8476 5.570844 GCATAAAACTACTCCCTCTGTTCCA 60.571 44.000 0.00 0.00 0.00 3.53
7640 8477 4.876679 GCATAAAACTACTCCCTCTGTTCC 59.123 45.833 0.00 0.00 0.00 3.62
7641 8478 5.351740 GTGCATAAAACTACTCCCTCTGTTC 59.648 44.000 0.00 0.00 0.00 3.18
7642 8479 5.221843 TGTGCATAAAACTACTCCCTCTGTT 60.222 40.000 0.00 0.00 0.00 3.16
7643 8480 4.286032 TGTGCATAAAACTACTCCCTCTGT 59.714 41.667 0.00 0.00 0.00 3.41
7644 8481 4.832248 TGTGCATAAAACTACTCCCTCTG 58.168 43.478 0.00 0.00 0.00 3.35
7645 8482 5.700402 ATGTGCATAAAACTACTCCCTCT 57.300 39.130 0.00 0.00 0.00 3.69
7646 8483 7.769044 TCTTAATGTGCATAAAACTACTCCCTC 59.231 37.037 0.00 0.00 0.00 4.30
7647 8484 7.630082 TCTTAATGTGCATAAAACTACTCCCT 58.370 34.615 0.00 0.00 0.00 4.20
7648 8485 7.859325 TCTTAATGTGCATAAAACTACTCCC 57.141 36.000 0.00 0.00 0.00 4.30
7649 8486 9.109393 TCATCTTAATGTGCATAAAACTACTCC 57.891 33.333 0.00 0.00 34.32 3.85
7776 8613 5.254115 ACAATAGAAAAGGGCACTAACTCC 58.746 41.667 0.00 0.00 0.00 3.85
7801 8638 2.564062 CCACCTTGCTCAATTGGTCATT 59.436 45.455 5.42 0.00 0.00 2.57
7807 8644 0.680618 TTGCCCACCTTGCTCAATTG 59.319 50.000 0.00 0.00 0.00 2.32
7834 8671 1.814394 AGCCAGTAACACATGCACATG 59.186 47.619 9.06 9.06 44.15 3.21
7896 8773 4.808042 CCCCCTCCAATCTATGAACAAAT 58.192 43.478 0.00 0.00 0.00 2.32
7897 8774 3.627237 GCCCCCTCCAATCTATGAACAAA 60.627 47.826 0.00 0.00 0.00 2.83
7910 8787 2.538141 CCTCAAACTGCCCCCTCCA 61.538 63.158 0.00 0.00 0.00 3.86
7916 8793 3.350219 TTGTAGATCCTCAAACTGCCC 57.650 47.619 0.00 0.00 0.00 5.36
8040 8917 6.169800 TGGAAGAAACATGATCGACAACATA 58.830 36.000 0.00 0.00 0.00 2.29
8049 8926 5.936956 ACTGAAGACTGGAAGAAACATGATC 59.063 40.000 0.00 0.00 37.43 2.92
8113 8990 6.254281 TGAGAGCAGCCTAAAACAAAATAC 57.746 37.500 0.00 0.00 0.00 1.89
8115 8992 5.068987 TGTTGAGAGCAGCCTAAAACAAAAT 59.931 36.000 0.00 0.00 0.00 1.82
8116 8993 4.400884 TGTTGAGAGCAGCCTAAAACAAAA 59.599 37.500 0.00 0.00 0.00 2.44
8134 9011 5.123820 GGTGCAGTATTGAATTAGCTGTTGA 59.876 40.000 0.00 0.00 0.00 3.18
8140 9017 5.123820 TCAGTTGGTGCAGTATTGAATTAGC 59.876 40.000 0.00 0.00 0.00 3.09
8181 9058 4.968259 TGAACAAGTAAAAGGCTCAGCTA 58.032 39.130 0.00 0.00 0.00 3.32
8183 9060 4.216257 TCATGAACAAGTAAAAGGCTCAGC 59.784 41.667 0.00 0.00 0.00 4.26
8185 9062 6.265196 ACAATCATGAACAAGTAAAAGGCTCA 59.735 34.615 0.00 0.00 0.00 4.26
8197 9074 7.502226 ACTCTCCAAACTAACAATCATGAACAA 59.498 33.333 0.00 0.00 0.00 2.83
8238 9115 1.233285 ACAGCCAAAAGAGAGCAGCG 61.233 55.000 0.00 0.00 0.00 5.18
8266 9143 3.307782 CGCCTGCATTGGAAATTCAAATC 59.692 43.478 0.00 0.00 0.00 2.17
8321 9199 2.187946 GGAGGAGCACCCATGTCG 59.812 66.667 0.00 0.00 37.41 4.35
8336 9214 5.238432 GTGTTGAAATATCATACCATGCGGA 59.762 40.000 0.00 0.00 34.96 5.54
8432 9347 2.373224 AGATTGCTTTAGAAGGCTGCC 58.627 47.619 11.65 11.65 0.00 4.85
8468 9383 6.183360 ACAAAAGAACAAGATTGCGTCACTTA 60.183 34.615 0.00 0.00 0.00 2.24
8474 9389 4.743493 ACAACAAAAGAACAAGATTGCGT 58.257 34.783 0.00 0.00 0.00 5.24
8493 9408 7.985184 AGAAATTGTCTAATGCTACGGATACAA 59.015 33.333 0.00 0.00 33.56 2.41
8495 9410 7.948278 AGAAATTGTCTAATGCTACGGATAC 57.052 36.000 0.00 0.00 33.56 2.24
8510 9425 9.950680 TCAAACACTTAGAATCAAGAAATTGTC 57.049 29.630 0.00 0.00 0.00 3.18
8574 9491 7.809546 TCTGTGTGATATCCTAGTTCTAGTG 57.190 40.000 0.00 0.00 0.00 2.74
8660 9590 9.569122 TTCTAGTTCTGGTAACTAAAAGCATTT 57.431 29.630 0.00 0.00 37.44 2.32
8661 9591 9.000486 GTTCTAGTTCTGGTAACTAAAAGCATT 58.000 33.333 0.00 0.00 32.89 3.56
8662 9592 8.376270 AGTTCTAGTTCTGGTAACTAAAAGCAT 58.624 33.333 0.00 0.00 32.89 3.79
8711 9641 4.925054 CCTGCATTAAGGTGACAACAAATG 59.075 41.667 12.07 12.07 32.17 2.32
8718 9648 1.340017 GCCTCCTGCATTAAGGTGACA 60.340 52.381 10.00 0.00 40.77 3.58
8719 9649 1.383523 GCCTCCTGCATTAAGGTGAC 58.616 55.000 10.00 0.00 40.77 3.67
8720 9650 3.882131 GCCTCCTGCATTAAGGTGA 57.118 52.632 10.00 0.00 40.77 4.02
8910 9840 0.323360 GCACCCCTTAGCCATGAACA 60.323 55.000 0.00 0.00 0.00 3.18
8919 9849 6.126409 TGTTCCTAAATAATGCACCCCTTAG 58.874 40.000 0.00 0.00 0.00 2.18
8952 9882 1.812571 CAGTTTGAGCCCCATGTGTAC 59.187 52.381 0.00 0.00 0.00 2.90
8963 9897 0.819259 TGTGCAGGGACAGTTTGAGC 60.819 55.000 0.00 0.00 0.00 4.26
9017 9952 2.062890 GCGACATCTAAACGCCGACG 62.063 60.000 0.00 0.00 45.35 5.12
9027 9978 1.953559 GGCAGATTTGGCGACATCTA 58.046 50.000 0.00 0.00 42.32 1.98
9057 10008 2.796557 TGAACAAAATACCCCGCATCA 58.203 42.857 0.00 0.00 0.00 3.07
9058 10009 3.859411 TTGAACAAAATACCCCGCATC 57.141 42.857 0.00 0.00 0.00 3.91
9065 10016 5.234116 CAGCCACAACTTTGAACAAAATACC 59.766 40.000 0.00 0.00 0.00 2.73
9066 10021 5.276820 GCAGCCACAACTTTGAACAAAATAC 60.277 40.000 0.00 0.00 0.00 1.89
9146 10121 5.048364 TGGTACACACAAATACTTCCAATGC 60.048 40.000 0.00 0.00 0.00 3.56
9168 10143 1.004044 AGCCACAGAGATTCAACCTGG 59.996 52.381 0.00 0.00 32.52 4.45
9185 10162 1.007387 CCCTGCAACGAACAAAGCC 60.007 57.895 0.00 0.00 0.00 4.35
9208 10185 2.678190 GCTCGACCAGCTACAGGAATTT 60.678 50.000 0.00 0.00 45.83 1.82
9244 10221 0.868406 GAGACTGTTTCCCAAGCACG 59.132 55.000 0.00 0.00 0.00 5.34
9262 10239 1.807755 GCAATGGACTGCTATCTGCGA 60.808 52.381 0.00 0.00 46.63 5.10
9368 10350 9.075678 GGATACAAGAAGCTGTAGGTAGTTATA 57.924 37.037 0.00 0.00 35.32 0.98
9369 10351 7.785506 AGGATACAAGAAGCTGTAGGTAGTTAT 59.214 37.037 0.00 0.00 35.32 1.89
9372 10354 5.520751 AGGATACAAGAAGCTGTAGGTAGT 58.479 41.667 0.00 0.00 35.32 2.73
9380 10362 2.103941 GGAGGGAGGATACAAGAAGCTG 59.896 54.545 0.00 0.00 41.41 4.24
9434 10416 1.010935 ACGTGTGATCTCGCTTGCAG 61.011 55.000 6.75 0.00 34.50 4.41
9474 10473 5.738693 GGTTAAACACAAGTGGTTTTACGAC 59.261 40.000 8.97 1.76 41.38 4.34
9477 10476 5.350633 GGGGTTAAACACAAGTGGTTTTAC 58.649 41.667 8.97 7.86 41.38 2.01
9484 10483 2.227865 CGATGGGGGTTAAACACAAGTG 59.772 50.000 0.00 0.00 0.00 3.16
9486 10485 2.486592 GACGATGGGGGTTAAACACAAG 59.513 50.000 0.00 0.00 0.00 3.16
9495 10494 2.656069 CGAGTGGACGATGGGGGTT 61.656 63.158 0.00 0.00 35.09 4.11
9496 10495 3.075005 CGAGTGGACGATGGGGGT 61.075 66.667 0.00 0.00 35.09 4.95
9510 10509 4.378356 CGGATCTTCATAGCTCTTCTCGAG 60.378 50.000 5.93 5.93 42.88 4.04
9517 10516 1.342819 GTGCCGGATCTTCATAGCTCT 59.657 52.381 5.05 0.00 0.00 4.09
9539 10539 2.100631 GTGACGGATTGGGTGAGCG 61.101 63.158 0.00 0.00 0.00 5.03
9591 10591 1.067821 GCCGATTCCACACACCAAAAA 59.932 47.619 0.00 0.00 0.00 1.94
9592 10592 0.671251 GCCGATTCCACACACCAAAA 59.329 50.000 0.00 0.00 0.00 2.44
9593 10593 0.466372 TGCCGATTCCACACACCAAA 60.466 50.000 0.00 0.00 0.00 3.28
9594 10594 0.251121 ATGCCGATTCCACACACCAA 60.251 50.000 0.00 0.00 0.00 3.67
9595 10595 0.676466 GATGCCGATTCCACACACCA 60.676 55.000 0.00 0.00 0.00 4.17
9596 10596 0.392998 AGATGCCGATTCCACACACC 60.393 55.000 0.00 0.00 0.00 4.16
9597 10597 1.009829 GAGATGCCGATTCCACACAC 58.990 55.000 0.00 0.00 0.00 3.82
9598 10598 0.904649 AGAGATGCCGATTCCACACA 59.095 50.000 0.00 0.00 0.00 3.72
9599 10599 1.137872 AGAGAGATGCCGATTCCACAC 59.862 52.381 0.00 0.00 0.00 3.82
9600 10600 1.489481 AGAGAGATGCCGATTCCACA 58.511 50.000 0.00 0.00 0.00 4.17
9601 10601 2.159043 TGAAGAGAGATGCCGATTCCAC 60.159 50.000 0.00 0.00 0.00 4.02
9602 10602 2.110578 TGAAGAGAGATGCCGATTCCA 58.889 47.619 0.00 0.00 0.00 3.53
9603 10603 2.102252 AGTGAAGAGAGATGCCGATTCC 59.898 50.000 0.00 0.00 0.00 3.01
9604 10604 3.122297 CAGTGAAGAGAGATGCCGATTC 58.878 50.000 0.00 0.00 0.00 2.52
9605 10605 2.499289 ACAGTGAAGAGAGATGCCGATT 59.501 45.455 0.00 0.00 0.00 3.34
9606 10606 2.106566 ACAGTGAAGAGAGATGCCGAT 58.893 47.619 0.00 0.00 0.00 4.18
9607 10607 1.203287 CACAGTGAAGAGAGATGCCGA 59.797 52.381 0.00 0.00 0.00 5.54
9608 10608 1.067283 ACACAGTGAAGAGAGATGCCG 60.067 52.381 7.81 0.00 0.00 5.69
9609 10609 2.758736 ACACAGTGAAGAGAGATGCC 57.241 50.000 7.81 0.00 0.00 4.40
9610 10610 4.083590 GGAAAACACAGTGAAGAGAGATGC 60.084 45.833 7.81 0.00 0.00 3.91
9642 10642 1.148310 ACAAAGAACAGATGGACGCG 58.852 50.000 3.53 3.53 0.00 6.01
9645 10667 4.821805 TCCAGAAACAAAGAACAGATGGAC 59.178 41.667 0.00 0.00 29.63 4.02
9663 10685 9.218440 GCCAAATTCAATTAAAATTTCTCCAGA 57.782 29.630 7.43 0.00 34.84 3.86
9664 10686 9.001542 TGCCAAATTCAATTAAAATTTCTCCAG 57.998 29.630 7.43 0.00 34.84 3.86
9729 10751 1.112113 TCACTAGCATCGTTCCCTCC 58.888 55.000 0.00 0.00 0.00 4.30
9737 10759 0.525668 GACACCCGTCACTAGCATCG 60.526 60.000 0.00 0.00 42.13 3.84
9806 10828 3.323751 AATGTGTACCACGTACCCTTC 57.676 47.619 0.00 0.00 38.14 3.46
9832 10854 8.284693 GCAAATTGAAGTGCACATTTTTCTTAT 58.715 29.630 21.04 8.79 40.58 1.73
9833 10855 7.254727 GGCAAATTGAAGTGCACATTTTTCTTA 60.255 33.333 21.04 6.95 42.74 2.10
9834 10856 6.458615 GGCAAATTGAAGTGCACATTTTTCTT 60.459 34.615 21.04 1.74 42.74 2.52
9835 10857 5.007921 GGCAAATTGAAGTGCACATTTTTCT 59.992 36.000 21.04 0.00 42.74 2.52
9836 10858 5.007921 AGGCAAATTGAAGTGCACATTTTTC 59.992 36.000 21.04 14.17 42.74 2.29
9837 10859 4.883006 AGGCAAATTGAAGTGCACATTTTT 59.117 33.333 21.04 3.86 42.74 1.94
9838 10860 4.453751 AGGCAAATTGAAGTGCACATTTT 58.546 34.783 21.04 4.29 42.74 1.82
9875 10903 3.187227 GCATCTAACAATATGCCAGTCGG 59.813 47.826 0.00 0.00 42.13 4.79
9880 10908 4.727677 TCCATGCATCTAACAATATGCCA 58.272 39.130 0.00 0.00 46.34 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.