Multiple sequence alignment - TraesCS3D01G089000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G089000 chr3D 100.000 9181 0 0 1 9181 45075223 45066043 0.000000e+00 16955.0
1 TraesCS3D01G089000 chr3B 95.982 2837 98 10 3919 6745 70587105 70584275 0.000000e+00 4593.0
2 TraesCS3D01G089000 chr3B 94.168 1646 47 16 1399 3010 70600179 70598549 0.000000e+00 2462.0
3 TraesCS3D01G089000 chr3B 93.005 1401 73 7 1 1401 70601582 70600207 0.000000e+00 2021.0
4 TraesCS3D01G089000 chr3B 93.217 1371 70 10 6955 8319 70583833 70582480 0.000000e+00 1995.0
5 TraesCS3D01G089000 chr3B 93.666 521 23 3 3006 3517 70589698 70589179 0.000000e+00 771.0
6 TraesCS3D01G089000 chr3B 92.387 486 23 6 7838 8319 70572531 70573006 0.000000e+00 680.0
7 TraesCS3D01G089000 chr3B 96.144 389 15 0 3515 3903 70587549 70587161 3.620000e-178 636.0
8 TraesCS3D01G089000 chr3B 85.348 546 47 19 8308 8836 70573022 70573551 1.360000e-147 534.0
9 TraesCS3D01G089000 chr3B 84.457 534 40 22 8560 9071 70582109 70581597 3.850000e-133 486.0
10 TraesCS3D01G089000 chr3B 91.628 215 15 3 6748 6960 70584220 70584007 2.510000e-75 294.0
11 TraesCS3D01G089000 chr3B 85.057 261 27 10 8308 8563 70582464 70582211 1.180000e-63 255.0
12 TraesCS3D01G089000 chr3B 85.833 240 28 3 8835 9072 70573810 70574045 5.500000e-62 250.0
13 TraesCS3D01G089000 chr3B 97.619 42 1 0 7823 7864 70572493 70572534 1.280000e-08 73.1
14 TraesCS3D01G089000 chr3B 94.444 36 1 1 5314 5348 280733820 280733785 5.000000e-03 54.7
15 TraesCS3D01G089000 chr3A 92.174 1380 85 11 5379 6745 57021755 57020386 0.000000e+00 1929.0
16 TraesCS3D01G089000 chr3A 94.132 1227 34 16 1968 3169 57024891 57023678 0.000000e+00 1832.0
17 TraesCS3D01G089000 chr3A 90.385 1404 83 15 1 1401 57026955 57025601 0.000000e+00 1797.0
18 TraesCS3D01G089000 chr3A 93.205 1089 63 7 6748 7827 57020330 57019244 0.000000e+00 1591.0
19 TraesCS3D01G089000 chr3A 96.376 883 29 2 3515 4396 57022633 57021753 0.000000e+00 1450.0
20 TraesCS3D01G089000 chr3A 96.190 525 20 0 2993 3517 57023680 57023156 0.000000e+00 859.0
21 TraesCS3D01G089000 chr3A 92.566 565 33 5 7823 8383 57017923 57017364 0.000000e+00 802.0
22 TraesCS3D01G089000 chr3A 92.424 396 16 6 1399 1781 57025573 57025179 3.750000e-153 553.0
23 TraesCS3D01G089000 chr3A 93.080 289 10 6 1776 2055 57025147 57024860 1.840000e-111 414.0
24 TraesCS3D01G089000 chr3A 85.253 434 23 15 8460 8880 57017326 57016921 8.580000e-110 409.0
25 TraesCS3D01G089000 chr3A 100.000 29 0 0 5314 5342 287754265 287754237 5.000000e-03 54.7
26 TraesCS3D01G089000 chr2B 80.896 335 55 5 107 441 67880523 67880198 1.180000e-63 255.0
27 TraesCS3D01G089000 chr2B 76.806 263 57 4 2051 2311 613207644 613207904 2.670000e-30 145.0
28 TraesCS3D01G089000 chr5B 71.050 1095 271 38 2051 3116 98277317 98276240 3.340000e-54 224.0
29 TraesCS3D01G089000 chr6D 78.723 329 62 6 2051 2375 22974211 22974535 7.220000e-51 213.0
30 TraesCS3D01G089000 chr1B 70.841 1070 262 37 2051 3089 127317613 127316563 1.560000e-47 202.0
31 TraesCS3D01G089000 chr6B 75.174 431 95 8 2056 2483 83253245 83253666 9.410000e-45 193.0
32 TraesCS3D01G089000 chr6B 79.839 248 44 2 2056 2303 83265872 83266113 9.470000e-40 176.0
33 TraesCS3D01G089000 chr6B 79.365 252 48 2 2056 2303 83206538 83206789 3.410000e-39 174.0
34 TraesCS3D01G089000 chr6B 78.731 268 40 8 5084 5342 314572951 314572692 7.380000e-36 163.0
35 TraesCS3D01G089000 chr6B 96.875 32 1 0 5314 5345 400056361 400056330 5.000000e-03 54.7
36 TraesCS3D01G089000 chr6B 96.875 32 1 0 5314 5345 400123376 400123345 5.000000e-03 54.7
37 TraesCS3D01G089000 chr2A 87.770 139 17 0 510 648 44751662 44751524 7.380000e-36 163.0
38 TraesCS3D01G089000 chr2A 100.000 30 0 0 5314 5343 319921241 319921212 1.000000e-03 56.5
39 TraesCS3D01G089000 chr6A 77.491 271 45 10 5080 5342 352648613 352648351 2.070000e-31 148.0
40 TraesCS3D01G089000 chr4A 79.130 115 18 5 5229 5341 287584828 287584938 3.560000e-09 75.0
41 TraesCS3D01G089000 chr2D 84.000 75 7 3 6920 6990 25300245 25300172 5.950000e-07 67.6
42 TraesCS3D01G089000 chr7B 92.105 38 2 1 5314 5351 302323415 302323379 1.700000e-02 52.8
43 TraesCS3D01G089000 chr1A 96.875 32 0 1 5311 5341 200619325 200619294 1.700000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G089000 chr3D 45066043 45075223 9180 True 16955.000 16955 100.000000 1 9181 1 chr3D.!!$R1 9180
1 TraesCS3D01G089000 chr3B 70598549 70601582 3033 True 2241.500 2462 93.586500 1 3010 2 chr3B.!!$R3 3009
2 TraesCS3D01G089000 chr3B 70581597 70589698 8101 True 1290.000 4593 91.450143 3006 9071 7 chr3B.!!$R2 6065
3 TraesCS3D01G089000 chr3B 70572493 70574045 1552 False 384.275 680 90.296750 7823 9072 4 chr3B.!!$F1 1249
4 TraesCS3D01G089000 chr3A 57016921 57026955 10034 True 1163.600 1929 92.578500 1 8880 10 chr3A.!!$R2 8879
5 TraesCS3D01G089000 chr5B 98276240 98277317 1077 True 224.000 224 71.050000 2051 3116 1 chr5B.!!$R1 1065
6 TraesCS3D01G089000 chr1B 127316563 127317613 1050 True 202.000 202 70.841000 2051 3089 1 chr1B.!!$R1 1038

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
324 325 0.396974 TGCAGGCCAGTTGAAGGTTT 60.397 50.000 5.01 0.00 0.00 3.27 F
329 330 1.754226 GGCCAGTTGAAGGTTTGTGAA 59.246 47.619 0.00 0.00 0.00 3.18 F
1137 1141 1.760192 CCTGGCTGAGCTGCTAAATT 58.240 50.000 3.72 0.00 0.00 1.82 F
1784 1884 2.234143 TGAATGCCCGTCAATCAAACA 58.766 42.857 0.00 0.00 32.00 2.83 F
2602 2766 2.238646 CTGTAGGGGAGGCATTGTTGTA 59.761 50.000 0.00 0.00 0.00 2.41 F
3287 3648 1.159285 CCGAATCTGCAACTGCTTGA 58.841 50.000 2.95 2.23 42.66 3.02 F
4081 6118 0.040351 TCCTAGAGCTCTGTGGCTGT 59.960 55.000 26.78 0.00 43.20 4.40 F
4396 6434 0.247736 ATCTCGTCTGTCAACCCAGC 59.752 55.000 0.00 0.00 32.32 4.85 F
6132 8179 0.313672 TGAACGCCCAAATGCACTTC 59.686 50.000 0.00 0.00 0.00 3.01 F
6504 8554 0.104855 TCCTCGATCGGCCTCAAATG 59.895 55.000 16.41 0.00 0.00 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1137 1141 4.036262 GCAATTCGCAACATAACCTATCCA 59.964 41.667 0.00 0.00 41.79 3.41 R
1241 1245 4.851843 TGCCAAGAACAGATGAATCAGAT 58.148 39.130 0.00 0.00 0.00 2.90 R
2346 2508 0.324285 CAGAGAGCCAAAGGTGAGCT 59.676 55.000 0.00 0.00 40.24 4.09 R
3117 3477 1.117749 TCTGCAGCTCAGGACACTGT 61.118 55.000 9.47 0.00 45.14 3.55 R
3999 6036 0.252479 ATCTCCCACTCTGCAGCAAG 59.748 55.000 9.47 4.66 0.00 4.01 R
5028 7067 0.394565 ACTGCCAAGTCAGACAGTCC 59.605 55.000 2.66 0.00 39.04 3.85 R
5031 7070 1.002033 GCAAACTGCCAAGTCAGACAG 60.002 52.381 2.66 0.00 37.42 3.51 R
6306 8353 0.179009 GCCTGAAGCCATCATAGCCA 60.179 55.000 0.00 0.00 37.44 4.75 R
7493 9788 1.802553 TCCTGGGGATACACTTAGCC 58.197 55.000 0.00 0.00 44.55 3.93 R
8431 12122 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 2.370445 CGGCCAGTCTCCATCCCTT 61.370 63.158 2.24 0.00 0.00 3.95
74 75 2.696125 TCCATCCCTTCCCTGCCC 60.696 66.667 0.00 0.00 0.00 5.36
116 117 4.217266 ACCTCACCCCCACCCCTT 62.217 66.667 0.00 0.00 0.00 3.95
210 211 1.347817 CGTCAGCTCGCCTCACTTTC 61.348 60.000 0.00 0.00 0.00 2.62
233 234 7.610580 TCAACCACTTCTTAAATCCCAATTT 57.389 32.000 0.00 0.00 38.61 1.82
241 242 7.679881 ACTTCTTAAATCCCAATTTCTCCCATT 59.320 33.333 0.00 0.00 36.49 3.16
307 308 2.045926 AAGGTCGGCACATCCTGC 60.046 61.111 0.00 0.00 46.31 4.85
314 315 3.138798 GCACATCCTGCAGGCCAG 61.139 66.667 28.91 20.74 46.29 4.85
324 325 0.396974 TGCAGGCCAGTTGAAGGTTT 60.397 50.000 5.01 0.00 0.00 3.27
329 330 1.754226 GGCCAGTTGAAGGTTTGTGAA 59.246 47.619 0.00 0.00 0.00 3.18
360 361 5.957771 TTCATAGTATTTGCTCTCCCAGT 57.042 39.130 0.00 0.00 0.00 4.00
410 411 6.105333 TGTGCTTGCTTCTGTTTACAAATTT 58.895 32.000 0.00 0.00 0.00 1.82
411 412 6.035866 TGTGCTTGCTTCTGTTTACAAATTTG 59.964 34.615 16.67 16.67 0.00 2.32
412 413 6.255453 GTGCTTGCTTCTGTTTACAAATTTGA 59.745 34.615 24.64 5.76 0.00 2.69
413 414 6.985645 TGCTTGCTTCTGTTTACAAATTTGAT 59.014 30.769 24.64 11.17 0.00 2.57
414 415 7.042590 TGCTTGCTTCTGTTTACAAATTTGATG 60.043 33.333 24.64 0.00 0.00 3.07
415 416 7.569957 GCTTGCTTCTGTTTACAAATTTGATGG 60.570 37.037 24.64 8.21 0.00 3.51
416 417 5.695816 TGCTTCTGTTTACAAATTTGATGGC 59.304 36.000 24.64 11.72 0.00 4.40
417 418 5.928264 GCTTCTGTTTACAAATTTGATGGCT 59.072 36.000 24.64 4.36 0.00 4.75
418 419 6.424812 GCTTCTGTTTACAAATTTGATGGCTT 59.575 34.615 24.64 3.62 0.00 4.35
419 420 7.569957 GCTTCTGTTTACAAATTTGATGGCTTG 60.570 37.037 24.64 8.78 0.00 4.01
420 421 5.695816 TCTGTTTACAAATTTGATGGCTTGC 59.304 36.000 24.64 6.75 0.00 4.01
421 422 5.609423 TGTTTACAAATTTGATGGCTTGCT 58.391 33.333 24.64 1.42 0.00 3.91
422 423 6.753180 TGTTTACAAATTTGATGGCTTGCTA 58.247 32.000 24.64 0.44 0.00 3.49
423 424 6.867816 TGTTTACAAATTTGATGGCTTGCTAG 59.132 34.615 24.64 0.00 0.00 3.42
424 425 6.588719 TTACAAATTTGATGGCTTGCTAGT 57.411 33.333 24.64 0.00 0.00 2.57
425 426 4.813027 ACAAATTTGATGGCTTGCTAGTG 58.187 39.130 24.64 0.00 0.00 2.74
426 427 4.178540 CAAATTTGATGGCTTGCTAGTGG 58.821 43.478 13.08 0.00 0.00 4.00
427 428 2.877097 TTTGATGGCTTGCTAGTGGA 57.123 45.000 0.00 0.00 0.00 4.02
428 429 3.370840 TTTGATGGCTTGCTAGTGGAT 57.629 42.857 0.00 0.00 0.00 3.41
429 430 4.502105 TTTGATGGCTTGCTAGTGGATA 57.498 40.909 0.00 0.00 0.00 2.59
430 431 4.712051 TTGATGGCTTGCTAGTGGATAT 57.288 40.909 0.00 0.00 0.00 1.63
431 432 4.712051 TGATGGCTTGCTAGTGGATATT 57.288 40.909 0.00 0.00 0.00 1.28
432 433 4.392047 TGATGGCTTGCTAGTGGATATTG 58.608 43.478 0.00 0.00 0.00 1.90
433 434 4.102996 TGATGGCTTGCTAGTGGATATTGA 59.897 41.667 0.00 0.00 0.00 2.57
434 435 3.808728 TGGCTTGCTAGTGGATATTGAC 58.191 45.455 0.00 0.00 0.00 3.18
461 462 7.342541 TGATGTTTGTCCATGATTTGATATGGT 59.657 33.333 0.00 0.00 43.43 3.55
475 476 9.471702 GATTTGATATGGTGGAGGATAAATCAT 57.528 33.333 0.00 0.00 34.12 2.45
527 528 5.580691 GGTTTATTTGTTCATAAGGCTTGCC 59.419 40.000 10.69 2.97 0.00 4.52
593 596 4.900635 ATATGCCGATTGAAGGTTTGTC 57.099 40.909 0.00 0.00 0.00 3.18
748 752 3.411446 TGTGTGATGGAATGACCTTGTC 58.589 45.455 0.00 0.00 39.86 3.18
833 837 8.561536 TTTCCCCTACTATCATTGACTATTCA 57.438 34.615 0.00 0.00 0.00 2.57
1096 1100 2.075338 GCAGCACCTCTCTTTTCTCTG 58.925 52.381 0.00 0.00 0.00 3.35
1110 1114 1.878953 TCTCTGGCCTTTCGTTTGAC 58.121 50.000 3.32 0.00 0.00 3.18
1137 1141 1.760192 CCTGGCTGAGCTGCTAAATT 58.240 50.000 3.72 0.00 0.00 1.82
1540 1578 6.801539 TTAGGTTCAAATGCAAGTCTACTG 57.198 37.500 0.00 0.00 0.00 2.74
1608 1646 9.626045 GCATTAACAATACTTAAAAACTGAGCT 57.374 29.630 0.00 0.00 0.00 4.09
1716 1764 5.613358 AGACCTGAAAAGAAACAATAGCG 57.387 39.130 0.00 0.00 0.00 4.26
1720 1768 5.154222 CCTGAAAAGAAACAATAGCGAACC 58.846 41.667 0.00 0.00 0.00 3.62
1740 1803 9.525409 GCGAACCTCTCTATACTTTAACAAATA 57.475 33.333 0.00 0.00 0.00 1.40
1784 1884 2.234143 TGAATGCCCGTCAATCAAACA 58.766 42.857 0.00 0.00 32.00 2.83
1853 1953 4.180057 TGAAACACAACATCAAACAAGGC 58.820 39.130 0.00 0.00 0.00 4.35
1920 2023 9.883142 AGACTAGAGATGAAATAGAAAAACCAG 57.117 33.333 0.00 0.00 0.00 4.00
1925 2028 9.793259 AGAGATGAAATAGAAAAACCAGTACAA 57.207 29.630 0.00 0.00 0.00 2.41
2150 2312 8.514594 TGCAACTTAATAATGTTCTCCAAGAAG 58.485 33.333 0.00 0.00 34.42 2.85
2346 2508 8.064336 GTCTAAGAGACCAGGTATAAGACAAA 57.936 38.462 14.69 0.00 39.28 2.83
2408 2570 9.508567 GCAATATAATTCTCCACAAACTTCTTC 57.491 33.333 0.00 0.00 0.00 2.87
2578 2742 4.277515 TGATTCCAGAGTGAAAGGAGTG 57.722 45.455 0.00 0.00 32.11 3.51
2602 2766 2.238646 CTGTAGGGGAGGCATTGTTGTA 59.761 50.000 0.00 0.00 0.00 2.41
2647 2811 4.021368 GGGCTTGTAGAGACTGTCTTGTTA 60.021 45.833 12.27 3.02 36.64 2.41
2827 2992 4.713553 TGTTGAATGCCTTCTGTAAGTCA 58.286 39.130 3.32 0.00 33.76 3.41
2980 3166 5.112686 GCAAAGAGCTGCACTATAGTAAGT 58.887 41.667 4.74 0.00 42.17 2.24
3046 3232 3.265791 CAGAGGCATCAGTTTCCAGTAC 58.734 50.000 0.00 0.00 0.00 2.73
3067 3427 3.823304 ACAAAAGGAGTGGAGAAATCAGC 59.177 43.478 0.00 0.00 0.00 4.26
3117 3477 1.682854 CCTGCTTCACCTGCTGAAAAA 59.317 47.619 0.00 0.00 38.47 1.94
3201 3562 8.725148 GCTTACACATGATCCCATAATTCTTAG 58.275 37.037 0.00 0.00 0.00 2.18
3287 3648 1.159285 CCGAATCTGCAACTGCTTGA 58.841 50.000 2.95 2.23 42.66 3.02
3334 3695 3.072038 CCATCAGCAGGGAGAATATGTCA 59.928 47.826 0.00 0.00 0.00 3.58
3669 5666 6.239402 GCCATTTGGAAATATCTATTGCACCT 60.239 38.462 0.00 0.00 37.39 4.00
3770 5767 5.551760 ACTATGCTTTCATTTCCTGTTCG 57.448 39.130 0.00 0.00 34.22 3.95
3848 5845 2.035530 AAGCAGGAGTATGAGCTTGC 57.964 50.000 0.00 0.00 44.84 4.01
3908 5905 1.761784 TCAGGTGGCTGTTGCAAATTT 59.238 42.857 0.00 0.00 41.91 1.82
3910 5907 2.944349 CAGGTGGCTGTTGCAAATTTTT 59.056 40.909 0.00 0.00 41.91 1.94
3999 6036 6.346096 TGGTATTATGCTGTTCTAGTTGACC 58.654 40.000 0.00 0.00 0.00 4.02
4046 6083 2.288825 TGCTCCAAGTCTTCAGTAACCG 60.289 50.000 0.00 0.00 0.00 4.44
4078 6115 1.809651 GCATTCCTAGAGCTCTGTGGC 60.810 57.143 26.78 15.93 0.00 5.01
4081 6118 0.040351 TCCTAGAGCTCTGTGGCTGT 59.960 55.000 26.78 0.00 43.20 4.40
4234 6271 0.393132 TGACGTCCGCTCTCAGATCT 60.393 55.000 14.12 0.00 0.00 2.75
4288 6326 0.545071 TCATGGACAGCACCTCCTGA 60.545 55.000 0.00 0.00 36.67 3.86
4299 6337 2.876079 GCACCTCCTGAAAGTCCGATTT 60.876 50.000 0.00 0.00 0.00 2.17
4317 6355 0.531974 TTGTCCAAACTCTTCGCGCT 60.532 50.000 5.56 0.00 0.00 5.92
4389 6427 1.468914 CGAACCTGATCTCGTCTGTCA 59.531 52.381 0.00 0.00 0.00 3.58
4396 6434 0.247736 ATCTCGTCTGTCAACCCAGC 59.752 55.000 0.00 0.00 32.32 4.85
4399 6437 3.050275 GTCTGTCAACCCAGCCGC 61.050 66.667 0.00 0.00 32.32 6.53
4489 6528 2.401583 TGCGATTCAGCAACCAGTAT 57.598 45.000 0.00 0.00 45.06 2.12
4524 6563 0.597637 CGCCGAATGAATCTACCGCT 60.598 55.000 0.00 0.00 0.00 5.52
4587 6626 3.329889 TCCAATCCGCACCCTGCT 61.330 61.111 0.00 0.00 42.25 4.24
4643 6682 4.709397 GTCAGATCCCAGTCCTATCTATGG 59.291 50.000 0.00 0.00 0.00 2.74
4644 6683 3.450457 CAGATCCCAGTCCTATCTATGGC 59.550 52.174 0.00 0.00 0.00 4.40
4658 6697 4.047627 TCTATGGCGGATTCAGGATAGA 57.952 45.455 0.00 0.00 0.00 1.98
4664 6703 4.220821 TGGCGGATTCAGGATAGATTACTC 59.779 45.833 0.00 0.00 0.00 2.59
4718 6757 1.805869 GAATCCATGGCCTCGATCTG 58.194 55.000 6.96 0.00 0.00 2.90
4738 6777 6.488769 TCTGTATTGATACGGTTTGGGTAT 57.511 37.500 9.22 0.00 39.92 2.73
4826 6865 7.148289 GGCTTTTATATAGGCGGGAATTTACTC 60.148 40.741 0.00 0.00 0.00 2.59
4872 6911 6.985117 AGTAATACGACAACTGGACAGTAAA 58.015 36.000 5.25 0.00 41.58 2.01
4892 6931 8.356657 CAGTAAATAGTAGAGGGTTGATCTGAG 58.643 40.741 0.00 0.00 0.00 3.35
4992 7031 9.383519 CTACAGTAACTGAATGTTGGATATGTT 57.616 33.333 0.00 0.00 39.55 2.71
5028 7067 3.369385 ACACTAACTCGAACACAAGTCG 58.631 45.455 0.00 0.00 0.00 4.18
5031 7070 1.849097 AACTCGAACACAAGTCGGAC 58.151 50.000 0.00 0.00 0.00 4.79
5105 7144 1.571457 TCCTCTTCGATCCCCTTCTCT 59.429 52.381 0.00 0.00 0.00 3.10
5244 7283 1.553706 TAGGAAGTCACCTCGGTTCC 58.446 55.000 0.00 0.00 41.00 3.62
5259 7298 0.370273 GTTCCGATAGCTTGTGCACG 59.630 55.000 13.13 0.00 42.74 5.34
5582 7628 6.313905 TCAGAAAAATAGTTGCTAGCTACAGC 59.686 38.462 27.17 5.73 42.15 4.40
5610 7656 7.926018 CCACATGTTACATATGCTGTTAGTAGA 59.074 37.037 1.58 0.00 39.39 2.59
5928 7974 4.999950 AGAAGTTCAGAGTACTGCATTTGG 59.000 41.667 0.00 0.00 43.17 3.28
5933 7979 4.253685 TCAGAGTACTGCATTTGGCTTAC 58.746 43.478 0.00 0.00 45.15 2.34
6112 8159 4.485163 GTTGTCATAGTTCATTGTTGGGC 58.515 43.478 0.00 0.00 0.00 5.36
6132 8179 0.313672 TGAACGCCCAAATGCACTTC 59.686 50.000 0.00 0.00 0.00 3.01
6270 8317 7.106439 AGATGTCTCTCAAGTGTCGATAAAT 57.894 36.000 0.00 0.00 0.00 1.40
6303 8350 1.068250 GCCCTATCTCGCTTCGCTT 59.932 57.895 0.00 0.00 0.00 4.68
6306 8353 1.000283 CCCTATCTCGCTTCGCTTGAT 60.000 52.381 0.00 0.00 0.00 2.57
6339 8386 3.740832 GCTTCAGGCAAATTTAACGCTTT 59.259 39.130 0.00 0.00 41.35 3.51
6349 8396 7.226772 GCAAATTTAACGCTTTGGATTAACTG 58.773 34.615 0.00 0.00 33.85 3.16
6393 8443 4.565531 GCGCCTATATAACGCCGT 57.434 55.556 15.51 0.00 46.63 5.68
6394 8444 3.700577 GCGCCTATATAACGCCGTA 57.299 52.632 15.51 0.00 46.63 4.02
6432 8482 5.435041 TCCATTATCCCCCTTGTTATTCTGT 59.565 40.000 0.00 0.00 0.00 3.41
6504 8554 0.104855 TCCTCGATCGGCCTCAAATG 59.895 55.000 16.41 0.00 0.00 2.32
6542 8592 6.018588 TGCAAATTGCTTGATTTCTTTGTCAG 60.019 34.615 19.34 0.00 45.31 3.51
6545 8595 8.392612 CAAATTGCTTGATTTCTTTGTCAGTTT 58.607 29.630 0.00 0.00 37.17 2.66
6546 8596 7.704789 ATTGCTTGATTTCTTTGTCAGTTTC 57.295 32.000 0.00 0.00 0.00 2.78
6610 8667 2.743718 GATCCATGGATCGGCGGT 59.256 61.111 33.48 10.26 41.09 5.68
6620 8678 1.212616 GATCGGCGGTGATTTCTCTG 58.787 55.000 7.21 0.00 0.00 3.35
6636 8694 2.705658 TCTCTGTGGATTGAGTGGTTGT 59.294 45.455 0.00 0.00 0.00 3.32
6670 8729 1.567357 AAATCCCACCCAATTTCCCG 58.433 50.000 0.00 0.00 0.00 5.14
6705 8764 0.391661 TGAAGATCGGCAGTTCAGGC 60.392 55.000 0.00 0.00 0.00 4.85
6745 8804 5.180492 GTGATTTCATTCGGGTACAAGTTGA 59.820 40.000 10.54 0.00 0.00 3.18
6746 8805 5.411361 TGATTTCATTCGGGTACAAGTTGAG 59.589 40.000 10.54 0.00 0.00 3.02
6794 8906 6.700352 TCAAGGCCCAAAATAATTCTTCTTG 58.300 36.000 0.00 0.00 0.00 3.02
6857 8970 4.666512 AGCTCTTGCCAAAATTTCTAGGA 58.333 39.130 8.09 0.00 40.80 2.94
6868 8981 8.531982 GCCAAAATTTCTAGGATTTAGAAAGGT 58.468 33.333 13.02 3.79 43.94 3.50
6924 9037 3.181466 GCCCTTCAACAAAAACATGAGGT 60.181 43.478 0.00 0.00 0.00 3.85
7067 9362 8.700051 ACAGAGTTTACTATGATTATGCAGTCT 58.300 33.333 11.16 0.00 37.37 3.24
7204 9499 9.383519 GAACTCTGGTGATTATAATGTCTTTCA 57.616 33.333 1.78 0.00 0.00 2.69
7222 9517 8.758829 TGTCTTTCATTCACTATAGTACCATGT 58.241 33.333 4.74 0.00 0.00 3.21
7303 9598 9.527157 TGATTCCTTTTACCAATATGTCAGAAA 57.473 29.630 0.00 0.00 0.00 2.52
7306 9601 9.974980 TTCCTTTTACCAATATGTCAGAAAAAC 57.025 29.630 0.00 0.00 0.00 2.43
7379 9674 5.598416 AAGGTATGATGACATTGTCTCGA 57.402 39.130 17.26 0.00 37.87 4.04
7396 9691 5.414144 TGTCTCGACAATTTTAATGCATGGA 59.586 36.000 0.00 0.00 38.56 3.41
7415 9710 6.672147 CATGGACTAGTTTATTAGGCATTGC 58.328 40.000 0.00 0.00 29.77 3.56
7419 9714 6.318900 GGACTAGTTTATTAGGCATTGCTTGT 59.681 38.462 8.82 0.00 29.77 3.16
7427 9722 0.681175 GGCATTGCTTGTTGGTTCCT 59.319 50.000 8.82 0.00 0.00 3.36
7450 9745 2.569059 AGGACATGGAATCAGCGAATG 58.431 47.619 0.00 0.00 0.00 2.67
7493 9788 2.545113 GCCAAGCAATGATGTATGCCAG 60.545 50.000 0.00 0.00 43.57 4.85
7514 9809 2.158798 GGCTAAGTGTATCCCCAGGAAC 60.159 54.545 0.00 0.00 34.34 3.62
7543 9838 4.101585 TGAGTTCTTCCATGAGTGTGAGTT 59.898 41.667 0.00 0.00 0.00 3.01
7545 9840 5.542779 AGTTCTTCCATGAGTGTGAGTTAC 58.457 41.667 0.00 0.00 0.00 2.50
7560 9855 5.465390 TGTGAGTTACGGAGAACAATTCAAG 59.535 40.000 0.00 0.00 0.00 3.02
7656 9951 7.224167 GGTACATAAACAAGGATCTTAACTCCG 59.776 40.741 0.00 0.00 37.88 4.63
7680 9975 5.567138 ACATCTATTTGTTTGCTAGTGCC 57.433 39.130 0.00 0.00 38.71 5.01
7699 9994 4.700213 GTGCCACCACTGTATTAATTGACT 59.300 41.667 0.00 0.00 38.93 3.41
7700 9995 5.183140 GTGCCACCACTGTATTAATTGACTT 59.817 40.000 0.00 0.00 38.93 3.01
7701 9996 6.373216 GTGCCACCACTGTATTAATTGACTTA 59.627 38.462 0.00 0.00 38.93 2.24
7703 9998 7.613801 TGCCACCACTGTATTAATTGACTTATT 59.386 33.333 0.00 0.00 0.00 1.40
7704 9999 8.129211 GCCACCACTGTATTAATTGACTTATTC 58.871 37.037 0.00 0.00 0.00 1.75
7705 10000 9.173021 CCACCACTGTATTAATTGACTTATTCA 57.827 33.333 0.00 0.00 0.00 2.57
7707 10002 9.959721 ACCACTGTATTAATTGACTTATTCAGT 57.040 29.630 0.00 0.00 39.07 3.41
8003 11663 5.228945 ACCACTGTACATGCTCTTAAGTT 57.771 39.130 1.63 0.00 0.00 2.66
8032 11692 4.193826 TCAACAACTCTCCTATCACTGC 57.806 45.455 0.00 0.00 0.00 4.40
8057 11717 6.202188 CCAGACCAATATATGTTCCGTGTTAC 59.798 42.308 0.00 0.00 0.00 2.50
8063 11726 9.483916 CCAATATATGTTCCGTGTTACATCTTA 57.516 33.333 0.00 0.00 36.46 2.10
8106 11769 2.088104 TATACTCCTGGAGGCTGTGG 57.912 55.000 26.56 1.94 33.35 4.17
8161 11824 1.537776 CGTCTCACAGCCTCATGATCC 60.538 57.143 0.00 0.00 0.00 3.36
8163 11826 0.463204 CTCACAGCCTCATGATCCGT 59.537 55.000 0.00 0.00 0.00 4.69
8164 11827 0.461548 TCACAGCCTCATGATCCGTC 59.538 55.000 0.00 0.00 0.00 4.79
8165 11828 0.176449 CACAGCCTCATGATCCGTCA 59.824 55.000 0.00 0.00 39.04 4.35
8197 11861 6.112058 AGGAGTAACAGCATCTTTTCATCTC 58.888 40.000 0.00 0.00 0.00 2.75
8203 11867 6.438259 ACAGCATCTTTTCATCTCTCAATG 57.562 37.500 0.00 0.00 0.00 2.82
8248 11912 8.135529 GCACATTAAACTTTCTTGGTAACTCTT 58.864 33.333 0.00 0.00 37.61 2.85
8303 11967 1.548357 ATCTTCACCTCAGCGGCACT 61.548 55.000 1.45 0.00 35.61 4.40
8306 11970 0.613260 TTCACCTCAGCGGCACTATT 59.387 50.000 1.45 0.00 35.61 1.73
8315 12006 3.625764 TCAGCGGCACTATTTTACATTCC 59.374 43.478 1.45 0.00 0.00 3.01
8342 12033 8.183104 ACTTCATGTCGATCTAAATGGAGATA 57.817 34.615 11.79 0.00 36.27 1.98
8349 12040 6.584563 GTCGATCTAAATGGAGATAGAACTGC 59.415 42.308 0.00 0.00 38.71 4.40
8358 12049 3.126831 GAGATAGAACTGCCGGAATGTG 58.873 50.000 5.05 0.00 0.00 3.21
8359 12050 2.766263 AGATAGAACTGCCGGAATGTGA 59.234 45.455 5.05 0.00 0.00 3.58
8397 12088 8.647143 AGGTGTAAATGTTTTGTCAAATCAAG 57.353 30.769 11.98 0.00 0.00 3.02
8425 12116 1.207791 AATGCTGGGCAGTAGTAGCT 58.792 50.000 0.00 0.00 43.65 3.32
8427 12118 0.537188 TGCTGGGCAGTAGTAGCTTC 59.463 55.000 0.00 0.00 37.10 3.86
8428 12119 0.827368 GCTGGGCAGTAGTAGCTTCT 59.173 55.000 0.00 0.00 33.53 2.85
8430 12121 2.898705 CTGGGCAGTAGTAGCTTCTTG 58.101 52.381 0.00 0.00 0.00 3.02
8431 12122 2.234908 CTGGGCAGTAGTAGCTTCTTGT 59.765 50.000 0.00 0.00 0.00 3.16
8432 12123 2.028112 TGGGCAGTAGTAGCTTCTTGTG 60.028 50.000 0.00 0.00 0.00 3.33
8434 12125 2.996621 GGCAGTAGTAGCTTCTTGTGTG 59.003 50.000 0.00 0.00 0.00 3.82
8436 12127 3.430218 GCAGTAGTAGCTTCTTGTGTGTG 59.570 47.826 0.00 0.00 0.00 3.82
8438 12129 4.445718 CAGTAGTAGCTTCTTGTGTGTGTG 59.554 45.833 0.00 0.00 0.00 3.82
8439 12130 3.543680 AGTAGCTTCTTGTGTGTGTGT 57.456 42.857 0.00 0.00 0.00 3.72
8440 12131 3.198068 AGTAGCTTCTTGTGTGTGTGTG 58.802 45.455 0.00 0.00 0.00 3.82
8441 12132 2.113860 AGCTTCTTGTGTGTGTGTGT 57.886 45.000 0.00 0.00 0.00 3.72
8442 12133 1.739466 AGCTTCTTGTGTGTGTGTGTG 59.261 47.619 0.00 0.00 0.00 3.82
8443 12134 1.468520 GCTTCTTGTGTGTGTGTGTGT 59.531 47.619 0.00 0.00 0.00 3.72
8444 12135 2.728846 GCTTCTTGTGTGTGTGTGTGTG 60.729 50.000 0.00 0.00 0.00 3.82
8445 12136 2.177394 TCTTGTGTGTGTGTGTGTGT 57.823 45.000 0.00 0.00 0.00 3.72
8446 12137 1.803555 TCTTGTGTGTGTGTGTGTGTG 59.196 47.619 0.00 0.00 0.00 3.82
8447 12138 1.535028 CTTGTGTGTGTGTGTGTGTGT 59.465 47.619 0.00 0.00 0.00 3.72
8448 12139 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
8449 12140 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
8450 12141 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
8451 12142 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
8452 12143 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
8454 12145 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
8455 12146 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
8456 12147 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
8457 12148 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
8458 12149 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
8499 12193 3.347216 AGTATGTTGATGCCCTGTGTTC 58.653 45.455 0.00 0.00 0.00 3.18
8555 12250 6.426633 TGCAACGGGAAATATGTAGTATGATG 59.573 38.462 0.00 0.00 0.00 3.07
8569 12264 7.857456 TGTAGTATGATGGAAAGTATGTGGTT 58.143 34.615 0.00 0.00 0.00 3.67
8570 12265 8.983789 TGTAGTATGATGGAAAGTATGTGGTTA 58.016 33.333 0.00 0.00 0.00 2.85
8583 12381 7.843490 AGTATGTGGTTATATTGTGTGTCAC 57.157 36.000 0.00 0.00 34.56 3.67
8590 12388 5.885912 GGTTATATTGTGTGTCACTGGGATT 59.114 40.000 4.27 0.00 35.11 3.01
8620 12419 8.318412 ACATGTTCAACACATATCCTGTAGTTA 58.682 33.333 0.00 0.00 45.06 2.24
8727 12535 2.749076 TCATGTTGTGATAGTTGCCAGC 59.251 45.455 0.00 0.00 0.00 4.85
8888 12968 5.924254 TGAGTACAACCAACAATACTCGAAG 59.076 40.000 0.00 0.00 44.28 3.79
8954 13036 5.751028 CCTATTGAGAGATTTTGGTCGAGTC 59.249 44.000 0.00 0.00 0.00 3.36
8955 13037 3.594603 TGAGAGATTTTGGTCGAGTCC 57.405 47.619 0.00 0.00 0.00 3.85
8962 13044 4.773149 AGATTTTGGTCGAGTCCTAAGAGT 59.227 41.667 0.00 0.00 0.00 3.24
8971 13053 4.699257 TCGAGTCCTAAGAGTAACTCCAAC 59.301 45.833 0.00 0.00 35.76 3.77
8973 13055 4.405548 AGTCCTAAGAGTAACTCCAACGT 58.594 43.478 0.00 0.00 0.00 3.99
8974 13056 4.217983 AGTCCTAAGAGTAACTCCAACGTG 59.782 45.833 0.00 0.00 0.00 4.49
8976 13058 2.165319 AAGAGTAACTCCAACGTGGC 57.835 50.000 0.00 0.00 37.47 5.01
8985 13067 2.482333 CCAACGTGGCGACCCAAAA 61.482 57.895 0.00 0.00 44.33 2.44
8988 13070 2.281208 CGTGGCGACCCAAAAGGA 60.281 61.111 0.00 0.00 44.33 3.36
8990 13072 1.527380 GTGGCGACCCAAAAGGACA 60.527 57.895 0.00 0.00 44.33 4.02
8999 13081 4.321601 CGACCCAAAAGGACATGCATTTTA 60.322 41.667 0.00 0.00 38.32 1.52
9002 13084 4.805192 CCCAAAAGGACATGCATTTTATCG 59.195 41.667 0.00 0.00 38.32 2.92
9010 13092 3.513515 ACATGCATTTTATCGGTTTGGGT 59.486 39.130 0.00 0.00 0.00 4.51
9015 13097 2.097680 TTTATCGGTTTGGGTCGGTC 57.902 50.000 0.00 0.00 0.00 4.79
9016 13098 0.975135 TTATCGGTTTGGGTCGGTCA 59.025 50.000 0.00 0.00 0.00 4.02
9060 13142 2.535934 TTGTTTGTGTCGACACTTGC 57.464 45.000 39.62 29.55 46.55 4.01
9061 13143 1.443802 TGTTTGTGTCGACACTTGCA 58.556 45.000 39.62 31.25 46.55 4.08
9062 13144 1.129624 TGTTTGTGTCGACACTTGCAC 59.870 47.619 39.62 29.95 46.55 4.57
9063 13145 0.730265 TTTGTGTCGACACTTGCACC 59.270 50.000 39.62 19.33 46.55 5.01
9064 13146 1.092921 TTGTGTCGACACTTGCACCC 61.093 55.000 39.62 18.66 46.55 4.61
9065 13147 1.522806 GTGTCGACACTTGCACCCA 60.523 57.895 35.51 0.90 43.25 4.51
9066 13148 1.092921 GTGTCGACACTTGCACCCAA 61.093 55.000 35.51 0.26 43.25 4.12
9067 13149 1.092921 TGTCGACACTTGCACCCAAC 61.093 55.000 15.76 0.00 0.00 3.77
9068 13150 1.885388 TCGACACTTGCACCCAACG 60.885 57.895 0.00 0.00 0.00 4.10
9069 13151 2.331451 GACACTTGCACCCAACGC 59.669 61.111 0.00 0.00 0.00 4.84
9070 13152 2.124320 ACACTTGCACCCAACGCT 60.124 55.556 0.00 0.00 0.00 5.07
9071 13153 2.332514 CACTTGCACCCAACGCTG 59.667 61.111 0.00 0.00 0.00 5.18
9072 13154 2.906897 ACTTGCACCCAACGCTGG 60.907 61.111 0.00 0.00 43.10 4.85
9073 13155 4.347453 CTTGCACCCAACGCTGGC 62.347 66.667 0.00 0.00 41.99 4.85
9074 13156 4.892965 TTGCACCCAACGCTGGCT 62.893 61.111 0.00 0.00 41.99 4.75
9091 13173 3.976339 CTCGGCCGAGAAGATGAAT 57.024 52.632 45.28 0.00 44.53 2.57
9092 13174 1.495878 CTCGGCCGAGAAGATGAATG 58.504 55.000 45.28 18.96 44.53 2.67
9093 13175 0.824109 TCGGCCGAGAAGATGAATGT 59.176 50.000 27.28 0.00 0.00 2.71
9094 13176 0.933097 CGGCCGAGAAGATGAATGTG 59.067 55.000 24.07 0.00 0.00 3.21
9095 13177 1.740380 CGGCCGAGAAGATGAATGTGT 60.740 52.381 24.07 0.00 0.00 3.72
9096 13178 1.936547 GGCCGAGAAGATGAATGTGTC 59.063 52.381 0.00 0.00 0.00 3.67
9102 13184 5.869344 CCGAGAAGATGAATGTGTCTGTTTA 59.131 40.000 0.00 0.00 0.00 2.01
9107 13189 9.903682 AGAAGATGAATGTGTCTGTTTATTTTG 57.096 29.630 0.00 0.00 0.00 2.44
9122 13204 5.838531 TTATTTTGTTTGGGTCGACACTT 57.161 34.783 20.37 0.00 0.00 3.16
9132 13214 1.885388 TCGACACTTGCACCCAACG 60.885 57.895 0.00 0.00 0.00 4.10
9135 13217 0.882927 GACACTTGCACCCAACGCTA 60.883 55.000 0.00 0.00 0.00 4.26
9136 13218 0.884704 ACACTTGCACCCAACGCTAG 60.885 55.000 0.00 0.00 38.07 3.42
9137 13219 1.966451 ACTTGCACCCAACGCTAGC 60.966 57.895 4.06 4.06 35.94 3.42
9138 13220 2.671619 TTGCACCCAACGCTAGCC 60.672 61.111 9.66 0.00 0.00 3.93
9139 13221 3.190738 TTGCACCCAACGCTAGCCT 62.191 57.895 9.66 0.00 0.00 4.58
9140 13222 3.127533 GCACCCAACGCTAGCCTG 61.128 66.667 9.66 6.82 0.00 4.85
9141 13223 2.662596 CACCCAACGCTAGCCTGA 59.337 61.111 9.66 0.00 0.00 3.86
9142 13224 1.741770 CACCCAACGCTAGCCTGAC 60.742 63.158 9.66 0.00 0.00 3.51
9143 13225 2.509336 CCCAACGCTAGCCTGACG 60.509 66.667 9.66 0.00 0.00 4.35
9144 13226 2.261671 CCAACGCTAGCCTGACGT 59.738 61.111 9.66 0.00 42.81 4.34
9145 13227 1.509463 CCAACGCTAGCCTGACGTA 59.491 57.895 9.66 0.00 39.49 3.57
9146 13228 0.102481 CCAACGCTAGCCTGACGTAT 59.898 55.000 9.66 0.00 39.49 3.06
9147 13229 1.470979 CCAACGCTAGCCTGACGTATT 60.471 52.381 9.66 0.00 39.49 1.89
9148 13230 2.268298 CAACGCTAGCCTGACGTATTT 58.732 47.619 9.66 0.00 39.49 1.40
9149 13231 2.667473 ACGCTAGCCTGACGTATTTT 57.333 45.000 9.66 0.00 38.45 1.82
9150 13232 2.968675 ACGCTAGCCTGACGTATTTTT 58.031 42.857 9.66 0.00 38.45 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 3.866582 GGATGGAGACTGGCCGGG 61.867 72.222 18.00 5.11 0.00 5.73
58 59 2.363292 GATGGGCAGGGAAGGGATGG 62.363 65.000 0.00 0.00 0.00 3.51
66 67 1.517538 ATTTGTGGGATGGGCAGGGA 61.518 55.000 0.00 0.00 0.00 4.20
146 147 0.100861 GCGACCAGCTACTACTCCAC 59.899 60.000 0.00 0.00 44.04 4.02
210 211 7.670364 AGAAATTGGGATTTAAGAAGTGGTTG 58.330 34.615 0.00 0.00 35.65 3.77
233 234 5.338381 GCATATAAGAATCCGGAATGGGAGA 60.338 44.000 9.01 0.00 40.02 3.71
241 242 9.871238 GAAATAGTTAGCATATAAGAATCCGGA 57.129 33.333 6.61 6.61 0.00 5.14
271 272 4.121317 CCTTGAAACAAGCTGCAAATTCA 58.879 39.130 1.02 4.36 0.00 2.57
307 308 1.067516 CACAAACCTTCAACTGGCCTG 59.932 52.381 8.29 8.29 0.00 4.85
337 338 6.313519 ACTGGGAGAGCAAATACTATGAAA 57.686 37.500 0.00 0.00 0.00 2.69
410 411 4.102996 TCAATATCCACTAGCAAGCCATCA 59.897 41.667 0.00 0.00 0.00 3.07
411 412 4.453819 GTCAATATCCACTAGCAAGCCATC 59.546 45.833 0.00 0.00 0.00 3.51
412 413 4.103785 AGTCAATATCCACTAGCAAGCCAT 59.896 41.667 0.00 0.00 0.00 4.40
413 414 3.455910 AGTCAATATCCACTAGCAAGCCA 59.544 43.478 0.00 0.00 0.00 4.75
414 415 3.812053 CAGTCAATATCCACTAGCAAGCC 59.188 47.826 0.00 0.00 0.00 4.35
415 416 4.697514 TCAGTCAATATCCACTAGCAAGC 58.302 43.478 0.00 0.00 0.00 4.01
416 417 6.286758 ACATCAGTCAATATCCACTAGCAAG 58.713 40.000 0.00 0.00 0.00 4.01
417 418 6.239217 ACATCAGTCAATATCCACTAGCAA 57.761 37.500 0.00 0.00 0.00 3.91
418 419 5.876651 ACATCAGTCAATATCCACTAGCA 57.123 39.130 0.00 0.00 0.00 3.49
419 420 6.540189 ACAAACATCAGTCAATATCCACTAGC 59.460 38.462 0.00 0.00 0.00 3.42
420 421 7.225538 GGACAAACATCAGTCAATATCCACTAG 59.774 40.741 0.00 0.00 36.50 2.57
421 422 7.047891 GGACAAACATCAGTCAATATCCACTA 58.952 38.462 0.00 0.00 36.50 2.74
422 423 5.882557 GGACAAACATCAGTCAATATCCACT 59.117 40.000 0.00 0.00 36.50 4.00
423 424 5.647658 TGGACAAACATCAGTCAATATCCAC 59.352 40.000 0.00 0.00 36.50 4.02
424 425 5.814481 TGGACAAACATCAGTCAATATCCA 58.186 37.500 0.00 0.00 36.50 3.41
425 426 6.543465 TCATGGACAAACATCAGTCAATATCC 59.457 38.462 0.00 0.00 36.50 2.59
426 427 7.558161 TCATGGACAAACATCAGTCAATATC 57.442 36.000 0.00 0.00 36.50 1.63
427 428 8.529424 AATCATGGACAAACATCAGTCAATAT 57.471 30.769 0.00 0.00 36.50 1.28
428 429 7.943079 AATCATGGACAAACATCAGTCAATA 57.057 32.000 0.00 0.00 36.50 1.90
429 430 6.845758 AATCATGGACAAACATCAGTCAAT 57.154 33.333 0.00 0.00 36.50 2.57
430 431 6.264970 TCAAATCATGGACAAACATCAGTCAA 59.735 34.615 0.00 0.00 36.50 3.18
431 432 5.769162 TCAAATCATGGACAAACATCAGTCA 59.231 36.000 0.00 0.00 36.50 3.41
432 433 6.258230 TCAAATCATGGACAAACATCAGTC 57.742 37.500 0.00 0.00 0.00 3.51
433 434 6.845758 ATCAAATCATGGACAAACATCAGT 57.154 33.333 0.00 0.00 0.00 3.41
434 435 7.865889 CCATATCAAATCATGGACAAACATCAG 59.134 37.037 0.00 0.00 43.80 2.90
461 462 5.065914 GCAGCTACAATGATTTATCCTCCA 58.934 41.667 0.00 0.00 0.00 3.86
475 476 1.878070 GCACATGCTGCAGCTACAA 59.122 52.632 36.61 19.33 46.29 2.41
527 528 2.575532 AGCCATATTTGACATGGTCCG 58.424 47.619 0.00 0.00 44.15 4.79
578 581 1.399727 GCACGGACAAACCTTCAATCG 60.400 52.381 0.00 0.00 36.31 3.34
593 596 1.600957 CTCTGCCATATCAAAGCACGG 59.399 52.381 0.00 0.00 32.06 4.94
692 696 6.168389 CAAGCCATATCACATATGCTACAGA 58.832 40.000 1.58 0.00 40.96 3.41
748 752 1.283793 CTGTTCCGTTTGCTGCAGG 59.716 57.895 17.12 0.67 0.00 4.85
833 837 6.038271 GCCGACTGTAAAGAATTATGTGGATT 59.962 38.462 0.00 0.00 0.00 3.01
842 846 3.262405 TGGTAGGCCGACTGTAAAGAATT 59.738 43.478 16.10 0.00 37.67 2.17
953 957 2.025793 CCGGCAGGAGAGATAGGAGATA 60.026 54.545 0.00 0.00 41.02 1.98
1096 1100 1.534729 ATGAGGTCAAACGAAAGGCC 58.465 50.000 0.00 0.00 0.00 5.19
1110 1114 2.119655 GCTCAGCCAGGCAATGAGG 61.120 63.158 25.10 12.01 40.64 3.86
1137 1141 4.036262 GCAATTCGCAACATAACCTATCCA 59.964 41.667 0.00 0.00 41.79 3.41
1238 1242 7.058525 TGCCAAGAACAGATGAATCAGATTAT 58.941 34.615 0.00 0.00 0.00 1.28
1239 1243 6.417258 TGCCAAGAACAGATGAATCAGATTA 58.583 36.000 0.00 0.00 0.00 1.75
1240 1244 5.258841 TGCCAAGAACAGATGAATCAGATT 58.741 37.500 0.00 0.00 0.00 2.40
1241 1245 4.851843 TGCCAAGAACAGATGAATCAGAT 58.148 39.130 0.00 0.00 0.00 2.90
1391 1395 7.763528 ACAAAAATCAACTACACAATCAGCAAA 59.236 29.630 0.00 0.00 0.00 3.68
1401 1405 5.503498 TGTACGCACAAAAATCAACTACAC 58.497 37.500 0.00 0.00 0.00 2.90
1403 1407 7.617533 AAATGTACGCACAAAAATCAACTAC 57.382 32.000 0.00 0.00 38.42 2.73
1404 1408 8.132362 AGAAAATGTACGCACAAAAATCAACTA 58.868 29.630 0.00 0.00 38.42 2.24
2346 2508 0.324285 CAGAGAGCCAAAGGTGAGCT 59.676 55.000 0.00 0.00 40.24 4.09
2380 2542 8.462016 AGAAGTTTGTGGAGAATTATATTGCAC 58.538 33.333 0.00 0.00 34.28 4.57
2408 2570 7.333323 AGAATATTTTCTTTTGGCCTGGATTG 58.667 34.615 3.32 0.00 39.18 2.67
2578 2742 1.282157 ACAATGCCTCCCCTACAGAAC 59.718 52.381 0.00 0.00 0.00 3.01
2602 2766 4.159135 CCATTTTGGAACAGCTGCTCTTAT 59.841 41.667 15.27 1.25 40.96 1.73
2647 2811 6.226787 GCACAGGATTTATATGACAGCTACT 58.773 40.000 0.00 0.00 0.00 2.57
2827 2992 6.373774 CAGACCAGCAATCTCTGAAGTTTATT 59.626 38.462 0.00 0.00 36.19 1.40
2980 3166 6.935771 ACTTATGCAAAATGGAAAAGCATTGA 59.064 30.769 3.41 0.00 42.76 2.57
3046 3232 4.077822 AGCTGATTTCTCCACTCCTTTTG 58.922 43.478 0.00 0.00 0.00 2.44
3067 3427 1.747355 CTGCCCCTGTTCTTGCATTAG 59.253 52.381 0.00 0.00 32.53 1.73
3117 3477 1.117749 TCTGCAGCTCAGGACACTGT 61.118 55.000 9.47 0.00 45.14 3.55
3201 3562 4.870991 GGCTGGTTACTACAGAAGATTCAC 59.129 45.833 0.00 0.00 38.20 3.18
3270 3631 4.698583 AGATTCAAGCAGTTGCAGATTC 57.301 40.909 6.90 9.32 45.16 2.52
3287 3648 8.214364 GGTGTTTCTATTGATCCCTCTAAGATT 58.786 37.037 0.00 0.00 0.00 2.40
3334 3695 3.076785 TGTTCCCCAGGTGGAATATTTGT 59.923 43.478 11.44 0.00 45.74 2.83
3387 3748 4.074970 TCTCTTTTGAGGAAACATCAGCC 58.925 43.478 0.00 0.00 46.22 4.85
3770 5767 6.569179 TGGCAAGGTTATTTCAAGACTTAC 57.431 37.500 0.00 0.00 0.00 2.34
3848 5845 1.118838 CTACTGCTCCTTCTCCAGGG 58.881 60.000 0.00 0.00 44.12 4.45
3999 6036 0.252479 ATCTCCCACTCTGCAGCAAG 59.748 55.000 9.47 4.66 0.00 4.01
4078 6115 5.537188 AGCTCTGTTCTGAAAACTCTACAG 58.463 41.667 0.00 0.00 35.51 2.74
4081 6118 5.791336 TGAGCTCTGTTCTGAAAACTCTA 57.209 39.130 16.19 0.00 0.00 2.43
4120 6157 1.758514 GGCTGTCCTCGATCTGGGA 60.759 63.158 0.00 0.21 0.00 4.37
4234 6271 1.000717 TCTCAACAGCAATCGACGACA 60.001 47.619 0.00 0.00 0.00 4.35
4288 6326 4.461198 AGAGTTTGGACAAATCGGACTTT 58.539 39.130 0.34 0.00 32.36 2.66
4299 6337 1.069090 AGCGCGAAGAGTTTGGACA 59.931 52.632 12.10 0.00 0.00 4.02
4404 6442 3.431725 CGGAGGCGGGTTTTCTGC 61.432 66.667 0.00 0.00 46.78 4.26
4524 6563 1.556373 CCTCTCCCTGATGTGTGGCA 61.556 60.000 0.00 0.00 0.00 4.92
4587 6626 2.903547 GCGCAGTTTTTCCTCGGCA 61.904 57.895 0.30 0.00 0.00 5.69
4643 6682 4.156190 TCGAGTAATCTATCCTGAATCCGC 59.844 45.833 0.00 0.00 0.00 5.54
4644 6683 5.881777 TCGAGTAATCTATCCTGAATCCG 57.118 43.478 0.00 0.00 0.00 4.18
4658 6697 6.737254 AATTCCGTTGTGATTTCGAGTAAT 57.263 33.333 0.00 0.00 0.00 1.89
4738 6777 1.759445 GGCTGAGAGGCTAGAACATGA 59.241 52.381 0.00 0.00 37.85 3.07
4826 6865 9.985730 TTACTATTTACCCTCATATTACCGTTG 57.014 33.333 0.00 0.00 0.00 4.10
4872 6911 4.156477 GGCTCAGATCAACCCTCTACTAT 58.844 47.826 0.00 0.00 0.00 2.12
4917 6956 1.683790 GGACGGTCGTCATTGCTTCG 61.684 60.000 22.35 0.00 46.20 3.79
5028 7067 0.394565 ACTGCCAAGTCAGACAGTCC 59.605 55.000 2.66 0.00 39.04 3.85
5031 7070 1.002033 GCAAACTGCCAAGTCAGACAG 60.002 52.381 2.66 0.00 37.42 3.51
5209 7248 1.480954 TCCTATTCGAACTCCCTGTGC 59.519 52.381 0.00 0.00 0.00 4.57
5244 7283 1.633171 GCTCGTGCACAAGCTATCG 59.367 57.895 22.48 2.35 42.74 2.92
5259 7298 1.541588 GTGGACCAATGACAAAGGCTC 59.458 52.381 0.00 0.00 0.00 4.70
5378 7417 5.010516 ACAGCTGCCTATCTATCTTACACTG 59.989 44.000 15.27 0.00 0.00 3.66
5384 7423 5.365021 ACAAACAGCTGCCTATCTATCTT 57.635 39.130 15.27 0.00 0.00 2.40
5582 7628 6.763135 ACTAACAGCATATGTAACATGTGGAG 59.237 38.462 0.00 6.30 43.00 3.86
5589 7635 6.978659 GCAGTCTACTAACAGCATATGTAACA 59.021 38.462 4.29 0.00 43.00 2.41
5928 7974 7.683437 AAACAAAGGTCCTATTAGTGTAAGC 57.317 36.000 0.00 0.00 0.00 3.09
6064 8111 7.095982 CGTTACCGTACATCAATGTATGCAATA 60.096 37.037 14.31 6.18 44.81 1.90
6112 8159 0.314935 AAGTGCATTTGGGCGTTCAG 59.685 50.000 0.00 0.00 36.28 3.02
6158 8205 6.073765 ACACATTTTATGCTATAGCGTGCTAC 60.074 38.462 26.43 0.00 45.83 3.58
6270 8317 4.593206 AGATAGGGCATCCGATAACTGAAA 59.407 41.667 0.00 0.00 38.33 2.69
6303 8350 2.224695 CCTGAAGCCATCATAGCCATCA 60.225 50.000 0.00 0.00 37.44 3.07
6306 8353 0.179009 GCCTGAAGCCATCATAGCCA 60.179 55.000 0.00 0.00 37.44 4.75
6339 8386 7.389607 GGAGTAAAAGTAACTGCAGTTAATCCA 59.610 37.037 34.72 21.09 41.58 3.41
6349 8396 9.000486 AGTAATTCTTGGAGTAAAAGTAACTGC 58.000 33.333 0.00 0.00 36.00 4.40
6393 8443 5.359576 GGATAATGGAAATGTTGCCACAGTA 59.640 40.000 0.00 0.00 36.92 2.74
6394 8444 4.160252 GGATAATGGAAATGTTGCCACAGT 59.840 41.667 0.00 0.00 36.92 3.55
6416 8466 4.301072 TTGAGACAGAATAACAAGGGGG 57.699 45.455 0.00 0.00 0.00 5.40
6432 8482 4.962362 TGTATCAGGTTCTAGCCATTGAGA 59.038 41.667 0.00 0.00 0.00 3.27
6482 8532 0.468214 TTGAGGCCGATCGAGGAGAT 60.468 55.000 18.66 0.00 43.51 2.75
6483 8533 0.683179 TTTGAGGCCGATCGAGGAGA 60.683 55.000 18.66 0.00 0.00 3.71
6504 8554 3.916776 GCAATTTGCAGAACAGAACTAGC 59.083 43.478 16.35 0.00 44.26 3.42
6542 8592 1.165270 CAGTGGGGATCCAACGAAAC 58.835 55.000 15.23 2.03 46.04 2.78
6545 8595 3.399046 CCAGTGGGGATCCAACGA 58.601 61.111 15.23 0.00 46.04 3.85
6604 8661 1.361668 CCACAGAGAAATCACCGCCG 61.362 60.000 0.00 0.00 0.00 6.46
6605 8662 0.036388 TCCACAGAGAAATCACCGCC 60.036 55.000 0.00 0.00 0.00 6.13
6607 8664 3.599343 TCAATCCACAGAGAAATCACCG 58.401 45.455 0.00 0.00 0.00 4.94
6608 8665 4.394300 CACTCAATCCACAGAGAAATCACC 59.606 45.833 0.00 0.00 35.83 4.02
6610 8667 4.042062 ACCACTCAATCCACAGAGAAATCA 59.958 41.667 0.00 0.00 35.83 2.57
6620 8678 2.224523 TGGAGACAACCACTCAATCCAC 60.225 50.000 0.00 0.00 37.44 4.02
6685 8744 1.945819 GCCTGAACTGCCGATCTTCAA 60.946 52.381 0.00 0.00 0.00 2.69
6705 8764 2.360350 ACTGCTCCCACAATGCCG 60.360 61.111 0.00 0.00 0.00 5.69
6829 8942 5.985530 AGAAATTTTGGCAAGAGCTTGTAAC 59.014 36.000 11.47 4.06 42.31 2.50
6833 8946 5.047802 TCCTAGAAATTTTGGCAAGAGCTTG 60.048 40.000 0.00 5.88 43.14 4.01
7067 9362 5.177511 GCGAATATCATCACGAAATTCTCCA 59.822 40.000 0.00 0.00 0.00 3.86
7204 9499 8.548877 AGGAACAAACATGGTACTATAGTGAAT 58.451 33.333 15.90 3.58 0.00 2.57
7214 9509 3.816523 TCGGAAAGGAACAAACATGGTAC 59.183 43.478 0.00 0.00 0.00 3.34
7222 9517 7.519032 AAATACTGAATCGGAAAGGAACAAA 57.481 32.000 0.00 0.00 0.00 2.83
7249 9544 8.070034 AGTCATCAAATCAAATAAAGCATGGA 57.930 30.769 0.00 0.00 0.00 3.41
7296 9591 3.005341 GCTTCAGCTGGTTTTTCTGAC 57.995 47.619 15.13 0.00 36.67 3.51
7372 9667 5.414144 TCCATGCATTAAAATTGTCGAGACA 59.586 36.000 0.00 1.24 39.98 3.41
7396 9691 7.362920 CCAACAAGCAATGCCTAATAAACTAGT 60.363 37.037 0.00 0.00 0.00 2.57
7427 9722 2.107366 TCGCTGATTCCATGTCCTACA 58.893 47.619 0.00 0.00 0.00 2.74
7450 9745 2.485426 TGTGCAGATTTGTAGAGCTTGC 59.515 45.455 0.00 0.00 0.00 4.01
7493 9788 1.802553 TCCTGGGGATACACTTAGCC 58.197 55.000 0.00 0.00 44.55 3.93
7543 9838 4.620803 GCTCTCCTTGAATTGTTCTCCGTA 60.621 45.833 0.00 0.00 0.00 4.02
7545 9840 2.675348 GCTCTCCTTGAATTGTTCTCCG 59.325 50.000 0.00 0.00 0.00 4.63
7627 9922 7.553044 AGTTAAGATCCTTGTTTATGTACCTGC 59.447 37.037 0.00 0.00 0.00 4.85
7656 9951 6.030228 GGCACTAGCAAACAAATAGATGTTC 58.970 40.000 0.00 0.00 40.00 3.18
7690 9985 8.827177 ACGAGTTCACTGAATAAGTCAATTAA 57.173 30.769 0.00 0.00 36.83 1.40
7693 9988 7.375834 TGTACGAGTTCACTGAATAAGTCAAT 58.624 34.615 0.00 0.00 36.83 2.57
7694 9989 6.741109 TGTACGAGTTCACTGAATAAGTCAA 58.259 36.000 0.00 0.00 36.83 3.18
7697 9992 8.603242 AAAATGTACGAGTTCACTGAATAAGT 57.397 30.769 0.00 0.00 40.93 2.24
7703 9998 9.135843 CACTAATAAAATGTACGAGTTCACTGA 57.864 33.333 0.00 0.00 0.00 3.41
7704 9999 8.380644 CCACTAATAAAATGTACGAGTTCACTG 58.619 37.037 0.00 0.00 0.00 3.66
7705 10000 8.092687 ACCACTAATAAAATGTACGAGTTCACT 58.907 33.333 0.00 0.00 0.00 3.41
7706 10001 8.248117 ACCACTAATAAAATGTACGAGTTCAC 57.752 34.615 0.00 0.00 0.00 3.18
7780 10088 9.998106 ACTACATGACTTAGTTTTGTGATTAGT 57.002 29.630 0.00 4.55 0.00 2.24
7800 10108 7.124298 TGCAAGTCTTCCTCTGTATAACTACAT 59.876 37.037 0.00 0.00 37.24 2.29
7851 11487 7.564660 TGCTTTTATGATCCTAAAATCATGGGT 59.435 33.333 14.02 0.00 44.23 4.51
8011 11671 3.055819 GGCAGTGATAGGAGAGTTGTTGA 60.056 47.826 0.00 0.00 0.00 3.18
8057 11717 4.082571 CCTTTTGGCTCACCTGTTAAGATG 60.083 45.833 0.00 0.00 36.63 2.90
8063 11726 2.031870 GAACCTTTTGGCTCACCTGTT 58.968 47.619 0.00 0.00 45.59 3.16
8123 11786 5.107220 TGAGACGAAAAATTTAGCGTTCTCC 60.107 40.000 23.06 13.06 37.07 3.71
8161 11824 1.737793 GTTACTCCTTGGGCAATGACG 59.262 52.381 0.00 0.00 0.00 4.35
8163 11826 2.879756 GCTGTTACTCCTTGGGCAATGA 60.880 50.000 0.00 0.00 0.00 2.57
8164 11827 1.474077 GCTGTTACTCCTTGGGCAATG 59.526 52.381 0.00 0.00 0.00 2.82
8165 11828 1.075374 TGCTGTTACTCCTTGGGCAAT 59.925 47.619 0.00 0.00 0.00 3.56
8197 11861 3.303593 GCGATGTATCAACTGCCATTGAG 60.304 47.826 6.00 0.00 41.76 3.02
8203 11867 1.268234 GCAAGCGATGTATCAACTGCC 60.268 52.381 0.00 0.00 0.00 4.85
8342 12033 1.072331 ACTTCACATTCCGGCAGTTCT 59.928 47.619 0.00 0.00 0.00 3.01
8349 12040 2.494059 ACAGTCAACTTCACATTCCGG 58.506 47.619 0.00 0.00 0.00 5.14
8358 12049 7.927048 ACATTTACACCTTAACAGTCAACTTC 58.073 34.615 0.00 0.00 0.00 3.01
8359 12050 7.875327 ACATTTACACCTTAACAGTCAACTT 57.125 32.000 0.00 0.00 0.00 2.66
8394 12085 2.880890 GCCCAGCATTACATCCTACTTG 59.119 50.000 0.00 0.00 0.00 3.16
8397 12088 2.158755 ACTGCCCAGCATTACATCCTAC 60.159 50.000 0.00 0.00 38.13 3.18
8412 12103 2.028020 ACACAAGAAGCTACTACTGCCC 60.028 50.000 0.00 0.00 0.00 5.36
8425 12116 2.225255 CACACACACACACACACAAGAA 59.775 45.455 0.00 0.00 0.00 2.52
8427 12118 1.535028 ACACACACACACACACACAAG 59.465 47.619 0.00 0.00 0.00 3.16
8428 12119 1.265365 CACACACACACACACACACAA 59.735 47.619 0.00 0.00 0.00 3.33
8430 12121 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
8431 12122 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
8432 12123 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
8434 12125 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
8436 12127 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
8438 12129 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
8439 12130 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
8440 12131 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
8441 12132 1.598882 AACACACACACACACACACA 58.401 45.000 0.00 0.00 0.00 3.72
8442 12133 2.697431 AAACACACACACACACACAC 57.303 45.000 0.00 0.00 0.00 3.82
8443 12134 2.860194 GCAAAACACACACACACACACA 60.860 45.455 0.00 0.00 0.00 3.72
8444 12135 1.718711 GCAAAACACACACACACACAC 59.281 47.619 0.00 0.00 0.00 3.82
8445 12136 1.611006 AGCAAAACACACACACACACA 59.389 42.857 0.00 0.00 0.00 3.72
8446 12137 2.095263 AGAGCAAAACACACACACACAC 60.095 45.455 0.00 0.00 0.00 3.82
8447 12138 2.158559 AGAGCAAAACACACACACACA 58.841 42.857 0.00 0.00 0.00 3.72
8448 12139 2.919666 AGAGCAAAACACACACACAC 57.080 45.000 0.00 0.00 0.00 3.82
8449 12140 5.238432 CCTATTAGAGCAAAACACACACACA 59.762 40.000 0.00 0.00 0.00 3.72
8450 12141 5.238650 ACCTATTAGAGCAAAACACACACAC 59.761 40.000 0.00 0.00 0.00 3.82
8451 12142 5.373222 ACCTATTAGAGCAAAACACACACA 58.627 37.500 0.00 0.00 0.00 3.72
8452 12143 5.941948 ACCTATTAGAGCAAAACACACAC 57.058 39.130 0.00 0.00 0.00 3.82
8454 12145 9.379791 ACTAATACCTATTAGAGCAAAACACAC 57.620 33.333 15.92 0.00 44.95 3.82
8499 12193 4.330250 ACCTTCTTCAATCATCACAGTGG 58.670 43.478 0.00 0.00 0.00 4.00
8555 12250 8.276252 ACACACAATATAACCACATACTTTCC 57.724 34.615 0.00 0.00 0.00 3.13
8563 12258 5.000591 CCAGTGACACACAATATAACCACA 58.999 41.667 8.59 0.00 36.74 4.17
8564 12259 4.394920 CCCAGTGACACACAATATAACCAC 59.605 45.833 8.59 0.00 36.74 4.16
8565 12260 4.287326 TCCCAGTGACACACAATATAACCA 59.713 41.667 8.59 0.00 36.74 3.67
8566 12261 4.839121 TCCCAGTGACACACAATATAACC 58.161 43.478 8.59 0.00 36.74 2.85
8567 12262 8.677148 ATAATCCCAGTGACACACAATATAAC 57.323 34.615 8.59 0.00 36.74 1.89
8569 12264 7.931407 GTGATAATCCCAGTGACACACAATATA 59.069 37.037 8.59 0.00 36.74 0.86
8570 12265 6.767902 GTGATAATCCCAGTGACACACAATAT 59.232 38.462 8.59 0.00 36.74 1.28
8574 12372 3.326297 TGTGATAATCCCAGTGACACACA 59.674 43.478 8.59 0.00 36.74 3.72
8575 12373 3.937814 TGTGATAATCCCAGTGACACAC 58.062 45.455 8.59 0.00 33.04 3.82
8583 12381 5.415389 TGTGTTGAACATGTGATAATCCCAG 59.585 40.000 0.00 0.00 32.36 4.45
8677 12483 8.855110 TCGTTGGCCACATATCAAAATAATAAT 58.145 29.630 3.88 0.00 0.00 1.28
8859 12939 4.771590 ATTGTTGGTTGTACTCAGCATG 57.228 40.909 0.00 0.00 37.54 4.06
8888 12968 6.869388 TGTTTCCTTGTTGGTTGTACTTTTTC 59.131 34.615 0.00 0.00 37.07 2.29
8954 13036 3.846360 CCACGTTGGAGTTACTCTTAGG 58.154 50.000 12.41 8.46 40.96 2.69
8955 13037 3.251571 GCCACGTTGGAGTTACTCTTAG 58.748 50.000 12.41 4.56 40.96 2.18
8962 13044 1.005867 GGTCGCCACGTTGGAGTTA 60.006 57.895 8.04 0.00 40.96 2.24
8971 13053 2.281208 TCCTTTTGGGTCGCCACG 60.281 61.111 0.00 0.00 40.87 4.94
8973 13055 0.893270 CATGTCCTTTTGGGTCGCCA 60.893 55.000 0.00 0.00 40.87 5.69
8974 13056 1.883021 CATGTCCTTTTGGGTCGCC 59.117 57.895 0.00 0.00 40.87 5.54
8976 13058 1.176527 ATGCATGTCCTTTTGGGTCG 58.823 50.000 0.00 0.00 40.87 4.79
8985 13067 4.142182 CCAAACCGATAAAATGCATGTCCT 60.142 41.667 0.00 0.00 0.00 3.85
8988 13070 3.513515 ACCCAAACCGATAAAATGCATGT 59.486 39.130 0.00 0.00 0.00 3.21
8990 13072 3.181491 CGACCCAAACCGATAAAATGCAT 60.181 43.478 0.00 0.00 0.00 3.96
8999 13081 0.321298 CTTGACCGACCCAAACCGAT 60.321 55.000 0.00 0.00 0.00 4.18
9002 13084 1.202722 TCTTCTTGACCGACCCAAACC 60.203 52.381 0.00 0.00 0.00 3.27
9010 13092 4.801330 ACACATATGTCTTCTTGACCGA 57.199 40.909 5.07 0.00 44.75 4.69
9047 13129 1.092921 TTGGGTGCAAGTGTCGACAC 61.093 55.000 35.83 35.83 46.77 3.67
9048 13130 1.092921 GTTGGGTGCAAGTGTCGACA 61.093 55.000 15.76 15.76 0.00 4.35
9049 13131 1.647084 GTTGGGTGCAAGTGTCGAC 59.353 57.895 9.11 9.11 0.00 4.20
9050 13132 1.885388 CGTTGGGTGCAAGTGTCGA 60.885 57.895 0.00 0.00 0.00 4.20
9051 13133 2.631428 CGTTGGGTGCAAGTGTCG 59.369 61.111 0.00 0.00 0.00 4.35
9052 13134 2.186826 AGCGTTGGGTGCAAGTGTC 61.187 57.895 0.00 0.00 33.85 3.67
9053 13135 2.124320 AGCGTTGGGTGCAAGTGT 60.124 55.556 0.00 0.00 33.85 3.55
9054 13136 2.332514 CAGCGTTGGGTGCAAGTG 59.667 61.111 0.00 0.00 34.49 3.16
9055 13137 2.906897 CCAGCGTTGGGTGCAAGT 60.907 61.111 10.99 0.00 41.05 3.16
9056 13138 4.347453 GCCAGCGTTGGGTGCAAG 62.347 66.667 20.66 0.00 45.16 4.01
9071 13153 2.279784 CATCTTCTCGGCCGAGCC 60.280 66.667 43.44 4.96 46.75 4.70
9072 13154 0.249657 ATTCATCTTCTCGGCCGAGC 60.250 55.000 43.44 0.00 41.71 5.03
9073 13155 1.202463 ACATTCATCTTCTCGGCCGAG 60.202 52.381 42.89 42.89 43.21 4.63
9074 13156 0.824109 ACATTCATCTTCTCGGCCGA 59.176 50.000 29.03 29.03 0.00 5.54
9075 13157 0.933097 CACATTCATCTTCTCGGCCG 59.067 55.000 22.12 22.12 0.00 6.13
9076 13158 1.936547 GACACATTCATCTTCTCGGCC 59.063 52.381 0.00 0.00 0.00 6.13
9077 13159 2.606725 CAGACACATTCATCTTCTCGGC 59.393 50.000 0.00 0.00 0.00 5.54
9078 13160 3.854666 ACAGACACATTCATCTTCTCGG 58.145 45.455 0.00 0.00 0.00 4.63
9079 13161 5.852738 AAACAGACACATTCATCTTCTCG 57.147 39.130 0.00 0.00 0.00 4.04
9081 13163 9.903682 CAAAATAAACAGACACATTCATCTTCT 57.096 29.630 0.00 0.00 0.00 2.85
9082 13164 9.683069 ACAAAATAAACAGACACATTCATCTTC 57.317 29.630 0.00 0.00 0.00 2.87
9086 13168 9.044150 CCAAACAAAATAAACAGACACATTCAT 57.956 29.630 0.00 0.00 0.00 2.57
9087 13169 7.493971 CCCAAACAAAATAAACAGACACATTCA 59.506 33.333 0.00 0.00 0.00 2.57
9088 13170 7.494298 ACCCAAACAAAATAAACAGACACATTC 59.506 33.333 0.00 0.00 0.00 2.67
9089 13171 7.334858 ACCCAAACAAAATAAACAGACACATT 58.665 30.769 0.00 0.00 0.00 2.71
9090 13172 6.883744 ACCCAAACAAAATAAACAGACACAT 58.116 32.000 0.00 0.00 0.00 3.21
9091 13173 6.287589 ACCCAAACAAAATAAACAGACACA 57.712 33.333 0.00 0.00 0.00 3.72
9092 13174 5.457473 CGACCCAAACAAAATAAACAGACAC 59.543 40.000 0.00 0.00 0.00 3.67
9093 13175 5.357314 TCGACCCAAACAAAATAAACAGACA 59.643 36.000 0.00 0.00 0.00 3.41
9094 13176 5.684184 GTCGACCCAAACAAAATAAACAGAC 59.316 40.000 3.51 0.00 0.00 3.51
9095 13177 5.357314 TGTCGACCCAAACAAAATAAACAGA 59.643 36.000 14.12 0.00 0.00 3.41
9096 13178 5.457473 GTGTCGACCCAAACAAAATAAACAG 59.543 40.000 14.12 0.00 0.00 3.16
9102 13184 3.736740 GCAAGTGTCGACCCAAACAAAAT 60.737 43.478 14.12 0.00 0.00 1.82
9107 13189 0.028902 GTGCAAGTGTCGACCCAAAC 59.971 55.000 14.12 4.21 0.00 2.93
9122 13204 3.636231 AGGCTAGCGTTGGGTGCA 61.636 61.111 9.00 0.00 33.85 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.