Multiple sequence alignment - TraesCS3D01G086600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G086600 chr3D 100.000 4691 0 0 1 4691 43802652 43797962 0.000000e+00 8663.0
1 TraesCS3D01G086600 chr3D 80.214 748 136 4 2737 3474 435312566 435313311 6.860000e-153 551.0
2 TraesCS3D01G086600 chr3D 100.000 48 0 0 4644 4691 570039119 570039166 6.470000e-14 89.8
3 TraesCS3D01G086600 chr3D 100.000 47 0 0 4645 4691 68050095 68050141 2.330000e-13 87.9
4 TraesCS3D01G086600 chr3D 100.000 47 0 0 4645 4691 510908595 510908549 2.330000e-13 87.9
5 TraesCS3D01G086600 chr3B 90.571 3680 290 30 879 4517 68467196 68463533 0.000000e+00 4820.0
6 TraesCS3D01G086600 chr3B 79.378 2895 489 58 824 3689 571450948 571453763 0.000000e+00 1940.0
7 TraesCS3D01G086600 chr3B 85.240 603 45 23 1 586 68468331 68467756 8.750000e-162 580.0
8 TraesCS3D01G086600 chr3A 91.081 3543 265 20 709 4214 55723956 55720428 0.000000e+00 4745.0
9 TraesCS3D01G086600 chr3A 78.808 906 175 7 2796 3685 574178609 574179513 1.120000e-165 593.0
10 TraesCS3D01G086600 chr3A 89.206 491 29 7 68 549 55725769 55725294 4.040000e-165 592.0
11 TraesCS3D01G086600 chr3A 91.166 283 18 7 4233 4510 55720372 55720092 1.230000e-100 377.0
12 TraesCS3D01G086600 chr6B 83.951 2698 387 31 1007 3670 95431303 95433988 0.000000e+00 2542.0
13 TraesCS3D01G086600 chr7D 100.000 50 0 0 4642 4691 31349920 31349871 5.000000e-15 93.5
14 TraesCS3D01G086600 chr5D 100.000 49 0 0 4643 4691 332222412 332222364 1.800000e-14 91.6
15 TraesCS3D01G086600 chr5D 100.000 49 0 0 4643 4691 421584280 421584232 1.800000e-14 91.6
16 TraesCS3D01G086600 chr7A 98.000 50 1 0 4642 4691 244499743 244499792 2.330000e-13 87.9
17 TraesCS3D01G086600 chr6A 96.296 54 1 1 4639 4691 531028185 531028132 2.330000e-13 87.9
18 TraesCS3D01G086600 chr6A 95.556 45 2 0 593 637 472520701 472520745 6.510000e-09 73.1
19 TraesCS3D01G086600 chr1D 100.000 47 0 0 4645 4691 427487169 427487215 2.330000e-13 87.9
20 TraesCS3D01G086600 chr1A 97.778 45 1 0 593 637 58710043 58709999 1.400000e-10 78.7
21 TraesCS3D01G086600 chr1A 94.118 51 2 1 593 642 471324116 471324166 5.030000e-10 76.8
22 TraesCS3D01G086600 chr1A 92.157 51 4 0 593 643 471324212 471324162 6.510000e-09 73.1
23 TraesCS3D01G086600 chr5A 95.652 46 2 0 593 638 564171883 564171928 1.810000e-09 75.0
24 TraesCS3D01G086600 chr2A 95.652 46 2 0 593 638 67537600 67537645 1.810000e-09 75.0
25 TraesCS3D01G086600 chr4D 95.556 45 2 0 593 637 453044643 453044687 6.510000e-09 73.1
26 TraesCS3D01G086600 chr4A 93.750 48 3 0 591 638 638245667 638245714 6.510000e-09 73.1
27 TraesCS3D01G086600 chr4A 100.000 28 0 0 4418 4445 666272515 666272488 8.000000e-03 52.8
28 TraesCS3D01G086600 chr7B 86.567 67 4 4 593 654 645325287 645325221 8.420000e-08 69.4
29 TraesCS3D01G086600 chr7B 100.000 28 0 0 4417 4444 490356397 490356424 8.000000e-03 52.8
30 TraesCS3D01G086600 chr4B 97.059 34 0 1 4412 4445 616303518 616303486 6.560000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G086600 chr3D 43797962 43802652 4690 True 8663.000000 8663 100.000000 1 4691 1 chr3D.!!$R1 4690
1 TraesCS3D01G086600 chr3D 435312566 435313311 745 False 551.000000 551 80.214000 2737 3474 1 chr3D.!!$F2 737
2 TraesCS3D01G086600 chr3B 68463533 68468331 4798 True 2700.000000 4820 87.905500 1 4517 2 chr3B.!!$R1 4516
3 TraesCS3D01G086600 chr3B 571450948 571453763 2815 False 1940.000000 1940 79.378000 824 3689 1 chr3B.!!$F1 2865
4 TraesCS3D01G086600 chr3A 55720092 55725769 5677 True 1904.666667 4745 90.484333 68 4510 3 chr3A.!!$R1 4442
5 TraesCS3D01G086600 chr3A 574178609 574179513 904 False 593.000000 593 78.808000 2796 3685 1 chr3A.!!$F1 889
6 TraesCS3D01G086600 chr6B 95431303 95433988 2685 False 2542.000000 2542 83.951000 1007 3670 1 chr6B.!!$F1 2663

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
990 2573 0.033601 ACAAAACAGGAGGTGTGCCA 60.034 50.0 0.00 0.0 40.26 4.92 F
2461 4064 0.172578 TGACCGTATGAGGTTGCTCG 59.827 55.0 0.00 0.0 46.09 5.03 F
2971 4587 0.250252 TGCGCAGTCCTGTGATTTCA 60.250 50.0 5.66 0.0 43.32 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2952 4568 0.250252 TGAAATCACAGGACTGCGCA 60.250 50.0 10.98 10.98 0.0 6.09 R
3411 5057 0.320697 ACTGTAACCGTGGAAGAGCC 59.679 55.0 0.00 0.00 37.1 4.70 R
4549 6269 0.032540 CTGGACCAGTTTTGCCAAGC 59.967 55.0 13.84 0.00 0.0 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 2.637919 CCCCCTGAATCCCTGACAT 58.362 57.895 0.00 0.00 0.00 3.06
62 63 0.184451 CCCCCTGAATCCCTGACATG 59.816 60.000 0.00 0.00 0.00 3.21
254 262 4.104183 GGGGCGATTCACGGGGAA 62.104 66.667 0.00 0.00 42.83 3.97
311 325 3.085952 TGCCGATTTCCAGGAAAGATT 57.914 42.857 19.62 3.48 34.92 2.40
347 361 8.702819 AGACTTACTGAATAACAACCCTATACC 58.297 37.037 0.00 0.00 0.00 2.73
348 362 8.383374 ACTTACTGAATAACAACCCTATACCA 57.617 34.615 0.00 0.00 0.00 3.25
349 363 8.999895 ACTTACTGAATAACAACCCTATACCAT 58.000 33.333 0.00 0.00 0.00 3.55
350 364 9.273016 CTTACTGAATAACAACCCTATACCATG 57.727 37.037 0.00 0.00 0.00 3.66
351 365 7.208064 ACTGAATAACAACCCTATACCATGT 57.792 36.000 0.00 0.00 0.00 3.21
353 367 8.208903 ACTGAATAACAACCCTATACCATGTAC 58.791 37.037 0.00 0.00 0.00 2.90
358 372 7.499200 AACAACCCTATACCATGTACTGTAA 57.501 36.000 0.00 0.00 0.00 2.41
455 477 9.603921 CCTTTGCATTTGTTATCCTTATCAATT 57.396 29.630 0.00 0.00 0.00 2.32
477 499 0.469705 TGCTCCCCATGTTTGCTTGT 60.470 50.000 0.00 0.00 0.00 3.16
478 500 1.202989 TGCTCCCCATGTTTGCTTGTA 60.203 47.619 0.00 0.00 0.00 2.41
479 501 1.474077 GCTCCCCATGTTTGCTTGTAG 59.526 52.381 0.00 0.00 0.00 2.74
480 502 2.094675 CTCCCCATGTTTGCTTGTAGG 58.905 52.381 0.00 0.00 0.00 3.18
481 503 0.532115 CCCCATGTTTGCTTGTAGGC 59.468 55.000 0.00 0.00 0.00 3.93
482 504 1.549203 CCCATGTTTGCTTGTAGGCT 58.451 50.000 0.00 0.00 0.00 4.58
508 535 2.731968 GCTATGCATGTTGTCAAACGGG 60.732 50.000 10.16 0.00 39.30 5.28
533 560 1.740285 CTAGGAACCCGATCCGGTG 59.260 63.158 6.50 0.00 46.80 4.94
549 576 2.511879 CGGTGCGCCTATTTTGTTTAC 58.488 47.619 15.69 0.00 0.00 2.01
550 577 2.095668 CGGTGCGCCTATTTTGTTTACA 60.096 45.455 15.69 0.00 0.00 2.41
552 579 3.917985 GGTGCGCCTATTTTGTTTACAAG 59.082 43.478 9.68 0.00 37.15 3.16
553 580 3.363724 GTGCGCCTATTTTGTTTACAAGC 59.636 43.478 4.18 0.00 37.15 4.01
554 581 3.254657 TGCGCCTATTTTGTTTACAAGCT 59.745 39.130 4.18 0.00 37.15 3.74
557 584 5.028375 CGCCTATTTTGTTTACAAGCTAGC 58.972 41.667 6.62 6.62 37.15 3.42
558 585 5.391523 CGCCTATTTTGTTTACAAGCTAGCA 60.392 40.000 18.83 0.00 37.15 3.49
561 1794 4.577834 TTTTGTTTACAAGCTAGCACCC 57.422 40.909 18.83 0.00 37.15 4.61
591 1825 8.455903 TCATCAATCTCAACAAGGAATTATCC 57.544 34.615 0.00 0.00 46.98 2.59
601 1835 2.841442 GGAATTATCCACTCCCTCCG 57.159 55.000 0.00 0.00 45.79 4.63
602 1836 2.326428 GGAATTATCCACTCCCTCCGA 58.674 52.381 0.00 0.00 45.79 4.55
604 1838 3.055747 GGAATTATCCACTCCCTCCGATC 60.056 52.174 0.00 0.00 45.79 3.69
605 1839 2.011122 TTATCCACTCCCTCCGATCC 57.989 55.000 0.00 0.00 0.00 3.36
607 1841 0.192064 ATCCACTCCCTCCGATCCAT 59.808 55.000 0.00 0.00 0.00 3.41
613 1847 4.090090 CACTCCCTCCGATCCATATTACT 58.910 47.826 0.00 0.00 0.00 2.24
615 1849 4.528596 ACTCCCTCCGATCCATATTACTTG 59.471 45.833 0.00 0.00 0.00 3.16
616 1850 4.489737 TCCCTCCGATCCATATTACTTGT 58.510 43.478 0.00 0.00 0.00 3.16
619 1853 3.909430 TCCGATCCATATTACTTGTCGC 58.091 45.455 0.00 0.00 0.00 5.19
620 1854 2.993899 CCGATCCATATTACTTGTCGCC 59.006 50.000 0.00 0.00 0.00 5.54
621 1855 2.661675 CGATCCATATTACTTGTCGCCG 59.338 50.000 0.00 0.00 0.00 6.46
622 1856 3.610821 CGATCCATATTACTTGTCGCCGA 60.611 47.826 0.00 0.00 0.00 5.54
623 1857 4.495422 GATCCATATTACTTGTCGCCGAT 58.505 43.478 0.00 0.00 0.00 4.18
624 1858 4.330944 TCCATATTACTTGTCGCCGATT 57.669 40.909 0.00 0.00 0.00 3.34
625 1859 4.699637 TCCATATTACTTGTCGCCGATTT 58.300 39.130 0.00 0.00 0.00 2.17
626 1860 5.845103 TCCATATTACTTGTCGCCGATTTA 58.155 37.500 0.00 0.00 0.00 1.40
627 1861 5.924254 TCCATATTACTTGTCGCCGATTTAG 59.076 40.000 0.00 0.00 0.00 1.85
628 1862 5.694910 CCATATTACTTGTCGCCGATTTAGT 59.305 40.000 0.00 0.00 0.00 2.24
629 1863 6.864685 CCATATTACTTGTCGCCGATTTAGTA 59.135 38.462 0.00 0.00 0.00 1.82
630 1864 7.148853 CCATATTACTTGTCGCCGATTTAGTAC 60.149 40.741 0.00 0.00 0.00 2.73
631 1865 3.581024 ACTTGTCGCCGATTTAGTACA 57.419 42.857 0.00 0.00 0.00 2.90
632 1866 3.916761 ACTTGTCGCCGATTTAGTACAA 58.083 40.909 0.00 0.00 0.00 2.41
633 1867 3.676646 ACTTGTCGCCGATTTAGTACAAC 59.323 43.478 0.00 0.00 0.00 3.32
634 1868 3.581024 TGTCGCCGATTTAGTACAACT 57.419 42.857 0.00 0.00 0.00 3.16
635 1869 3.916761 TGTCGCCGATTTAGTACAACTT 58.083 40.909 0.00 0.00 0.00 2.66
636 1870 4.309099 TGTCGCCGATTTAGTACAACTTT 58.691 39.130 0.00 0.00 0.00 2.66
637 1871 5.468592 TGTCGCCGATTTAGTACAACTTTA 58.531 37.500 0.00 0.00 0.00 1.85
638 1872 5.925397 TGTCGCCGATTTAGTACAACTTTAA 59.075 36.000 0.00 0.00 0.00 1.52
639 1873 6.591062 TGTCGCCGATTTAGTACAACTTTAAT 59.409 34.615 0.00 0.00 0.00 1.40
640 1874 7.758980 TGTCGCCGATTTAGTACAACTTTAATA 59.241 33.333 0.00 0.00 0.00 0.98
641 1875 8.758715 GTCGCCGATTTAGTACAACTTTAATAT 58.241 33.333 0.00 0.00 0.00 1.28
642 1876 9.964303 TCGCCGATTTAGTACAACTTTAATATA 57.036 29.630 0.00 0.00 0.00 0.86
643 1877 9.999883 CGCCGATTTAGTACAACTTTAATATAC 57.000 33.333 0.00 0.00 0.00 1.47
666 1900 9.851686 ATACAGCTGTATTATCTTGGAATCAAA 57.148 29.630 29.70 4.70 37.97 2.69
681 1915 9.248417 CTTGGAATCAAACTTTGTGCACACAAG 62.248 40.741 26.38 26.38 41.02 3.16
704 1938 7.429374 AGAGGTGAATTCTCTCATATGTGAA 57.571 36.000 22.23 9.20 36.99 3.18
706 1940 6.590068 AGGTGAATTCTCTCATATGTGAAGG 58.410 40.000 7.05 0.00 33.05 3.46
707 1941 5.238214 GGTGAATTCTCTCATATGTGAAGGC 59.762 44.000 7.05 6.44 33.05 4.35
714 1965 4.194640 TCTCATATGTGAAGGCTTTCAGC 58.805 43.478 12.09 7.71 43.66 4.26
721 1972 3.145286 GTGAAGGCTTTCAGCTCTCTTT 58.855 45.455 12.09 0.00 43.66 2.52
763 2017 8.483307 TGTAACTATTTTCAGTTAATCGGGAC 57.517 34.615 0.00 0.00 41.44 4.46
801 2056 6.264832 CAAACTTGAAAAAGGAAATTTGCCC 58.735 36.000 6.02 0.00 0.00 5.36
821 2397 2.830923 CCAAAGGGCATCATTTACACCA 59.169 45.455 0.00 0.00 0.00 4.17
845 2421 6.857777 AGATTATCAAGAGCTGGAATTTCG 57.142 37.500 0.00 0.00 0.00 3.46
956 2539 0.671781 CTCTTGTCCAGGCTCAACCG 60.672 60.000 0.00 0.00 46.52 4.44
988 2571 1.334869 CTGACAAAACAGGAGGTGTGC 59.665 52.381 0.00 0.00 40.26 4.57
989 2572 0.668535 GACAAAACAGGAGGTGTGCC 59.331 55.000 0.00 0.00 40.26 5.01
990 2573 0.033601 ACAAAACAGGAGGTGTGCCA 60.034 50.000 0.00 0.00 40.26 4.92
991 2574 0.670162 CAAAACAGGAGGTGTGCCAG 59.330 55.000 0.00 0.00 40.26 4.85
992 2575 0.258774 AAAACAGGAGGTGTGCCAGT 59.741 50.000 0.00 0.00 40.26 4.00
1027 2615 5.392057 GCATCCTACTGCTGTTTTAGGAAAC 60.392 44.000 15.28 8.58 43.66 2.78
1056 2650 2.223479 ACGTTTGCCAAGCTTTACTGTG 60.223 45.455 0.00 0.00 0.00 3.66
1083 2677 2.910688 ATCGGTTGATAACGCTCCAT 57.089 45.000 0.00 0.00 31.44 3.41
1109 2703 1.201965 GCTTTGCCTGATTCTTCGTCG 60.202 52.381 0.00 0.00 0.00 5.12
1137 2731 1.488705 AAGTGGTTGCCATCGAGGGA 61.489 55.000 22.53 5.59 35.28 4.20
1227 2821 6.369065 GCTTTGATACCTATATCTGGGTTTCG 59.631 42.308 0.00 0.00 36.97 3.46
1274 2868 2.429610 GGTGCATTGAGAAGATTGCCAT 59.570 45.455 0.00 0.00 34.20 4.40
1276 2870 4.261489 GGTGCATTGAGAAGATTGCCATAG 60.261 45.833 0.00 0.00 34.20 2.23
1277 2871 4.337555 GTGCATTGAGAAGATTGCCATAGT 59.662 41.667 0.00 0.00 34.20 2.12
1320 2914 7.011857 GGTGAGGAACTGTTATCATCAAGAATC 59.988 40.741 11.56 0.00 41.55 2.52
1377 2971 2.234300 TCTTGTTGGTCCTCGACAAC 57.766 50.000 9.11 9.11 42.98 3.32
1389 2983 3.810941 TCCTCGACAACGCTTATTTTGTT 59.189 39.130 0.00 0.00 36.06 2.83
1409 3003 5.556915 TGTTGAGGAAAACATCTTACGGAT 58.443 37.500 0.00 0.00 35.16 4.18
1586 3180 2.564504 TCGGCAGAGATATTGATCTGGG 59.435 50.000 12.68 0.00 42.80 4.45
1641 3235 0.468226 TTATCTTACTGGCTGGGGCG 59.532 55.000 0.00 0.00 39.81 6.13
1658 3252 1.668793 CGCTGTGTGATGTGCCTGA 60.669 57.895 0.00 0.00 0.00 3.86
1662 3256 1.534163 CTGTGTGATGTGCCTGAACAG 59.466 52.381 0.00 0.00 32.52 3.16
1663 3257 1.140652 TGTGTGATGTGCCTGAACAGA 59.859 47.619 3.19 0.00 32.52 3.41
1723 3320 3.133003 AGGACCCAAGATATCAGTGTTCG 59.867 47.826 5.32 0.00 0.00 3.95
1725 3322 2.501723 ACCCAAGATATCAGTGTTCGCT 59.498 45.455 5.32 0.00 0.00 4.93
1747 3344 4.096732 ACAATGATTCGCCTTGTAAAGC 57.903 40.909 0.00 0.00 44.44 3.51
1881 3484 5.994054 GCTAGATGGTATCATTCAAGAAGCA 59.006 40.000 0.00 0.00 32.98 3.91
1885 3488 6.541641 AGATGGTATCATTCAAGAAGCAAGAC 59.458 38.462 0.00 0.00 32.98 3.01
1894 3497 6.492007 TTCAAGAAGCAAGACATTCTCATC 57.508 37.500 0.00 0.00 34.71 2.92
2019 3622 0.719465 CGGTATCACAACTTGGACGC 59.281 55.000 0.00 0.00 0.00 5.19
2134 3737 4.335315 TGATGAACAACACAGTGAAGGAAC 59.665 41.667 7.81 0.00 0.00 3.62
2174 3777 5.192327 AGCCATGAGTTCTTTTCAACTTG 57.808 39.130 0.00 0.00 36.71 3.16
2217 3820 2.029380 CCGCCGTATGAGAACCATATCA 60.029 50.000 0.00 0.00 39.69 2.15
2221 3824 5.297547 GCCGTATGAGAACCATATCAGAAA 58.702 41.667 0.00 0.00 39.69 2.52
2222 3825 5.934625 GCCGTATGAGAACCATATCAGAAAT 59.065 40.000 0.00 0.00 39.69 2.17
2247 3850 2.046023 TGCCGTCTGGGAATGCTG 60.046 61.111 0.00 0.00 38.47 4.41
2272 3875 1.895798 TGCTAGACCTGTCCTTCACTG 59.104 52.381 0.00 0.00 0.00 3.66
2289 3892 1.005097 ACTGCAATCAGAATCCTGCCA 59.995 47.619 0.00 0.00 42.95 4.92
2302 3905 1.171308 CCTGCCACAGTCCATTTCTG 58.829 55.000 0.00 0.00 38.68 3.02
2307 3910 2.815589 GCCACAGTCCATTTCTGGTCTT 60.816 50.000 0.00 0.00 43.61 3.01
2342 3945 1.339055 GCTGCTACTGGTTGGATGTGA 60.339 52.381 0.00 0.00 0.00 3.58
2344 3947 3.614092 CTGCTACTGGTTGGATGTGAAT 58.386 45.455 0.00 0.00 0.00 2.57
2353 3956 3.545703 GTTGGATGTGAATACCTGGAGG 58.454 50.000 0.00 0.00 42.17 4.30
2378 3981 2.590007 GCACATAGGCTCGCTGGG 60.590 66.667 0.00 0.00 0.00 4.45
2461 4064 0.172578 TGACCGTATGAGGTTGCTCG 59.827 55.000 0.00 0.00 46.09 5.03
2536 4139 2.035704 TGCATGGCACTTAACCAACTTG 59.964 45.455 0.00 0.00 41.49 3.16
2537 4140 2.676076 CATGGCACTTAACCAACTTGC 58.324 47.619 0.00 0.00 41.49 4.01
2752 4358 7.315142 TGAATTTTCTGACAGATTTGGTATGC 58.685 34.615 5.87 0.00 0.00 3.14
2899 4512 7.498443 AGTTATCTCCCCTTTAAAGTACGATG 58.502 38.462 14.03 0.00 0.00 3.84
2908 4521 6.373216 CCCTTTAAAGTACGATGAAACCATGA 59.627 38.462 14.03 0.00 0.00 3.07
2952 4568 2.749621 GACAAAATTCTCTGCGGTGGAT 59.250 45.455 0.00 0.00 0.00 3.41
2962 4578 4.457496 CGGTGGATGCGCAGTCCT 62.457 66.667 27.67 10.24 36.68 3.85
2971 4587 0.250252 TGCGCAGTCCTGTGATTTCA 60.250 50.000 5.66 0.00 43.32 2.69
3100 4716 1.413077 GGACCCTGAATACCGGAAGAG 59.587 57.143 9.46 0.00 0.00 2.85
3108 4727 0.456221 ATACCGGAAGAGTGACAGCG 59.544 55.000 9.46 0.00 0.00 5.18
3371 5006 5.472137 GCCTACAAATAAGGTTCTGTGACAA 59.528 40.000 0.00 0.00 36.43 3.18
3391 5031 2.307768 ACTTGGAGAGAGTGTTCGACA 58.692 47.619 0.00 0.00 0.00 4.35
3421 5067 2.035442 GCGGAACAGGCTCTTCCAC 61.035 63.158 19.69 7.96 37.62 4.02
3532 5178 1.884067 GCTGTGGGAAACTGAAGGGAG 60.884 57.143 0.00 0.00 0.00 4.30
3741 5394 2.034687 ATGCCTCGCAAGGTGCTT 59.965 55.556 0.00 0.00 45.34 3.91
3768 5421 1.536709 GCTTTTGAGGTGTTGGCTGTG 60.537 52.381 0.00 0.00 0.00 3.66
3785 5438 0.108756 GTGGTCTGTCGGGTAAGCTC 60.109 60.000 0.00 0.00 0.00 4.09
3799 5452 1.115930 AAGCTCGTGACAGGAGGTGT 61.116 55.000 25.59 15.09 39.55 4.16
3800 5453 1.373497 GCTCGTGACAGGAGGTGTG 60.373 63.158 22.92 2.71 40.56 3.82
3804 5457 1.598130 GTGACAGGAGGTGTGGTGC 60.598 63.158 0.00 0.00 40.56 5.01
3853 5516 0.525455 TCGCGACATGACATCGAAGG 60.525 55.000 3.71 0.00 42.25 3.46
3854 5517 0.802222 CGCGACATGACATCGAAGGT 60.802 55.000 0.00 0.00 42.25 3.50
3855 5518 0.647410 GCGACATGACATCGAAGGTG 59.353 55.000 8.26 0.00 42.25 4.00
3856 5519 1.996292 CGACATGACATCGAAGGTGT 58.004 50.000 0.00 0.00 42.25 4.16
3878 5542 3.814268 CCCTTCGGCGGCATTGTG 61.814 66.667 10.53 0.00 0.00 3.33
3897 5561 3.538841 CACTCCTCGACGTGCAAC 58.461 61.111 0.00 0.00 0.00 4.17
3898 5562 1.299850 CACTCCTCGACGTGCAACA 60.300 57.895 0.00 0.00 35.74 3.33
3903 5567 1.271379 TCCTCGACGTGCAACATACTT 59.729 47.619 0.00 0.00 35.74 2.24
3904 5568 1.390123 CCTCGACGTGCAACATACTTG 59.610 52.381 0.00 0.00 35.74 3.16
3910 5574 1.390123 CGTGCAACATACTTGAGGTCG 59.610 52.381 0.00 0.00 35.74 4.79
3923 5587 2.284112 GGTCGTCCCCAGGGTACA 60.284 66.667 4.22 0.00 36.47 2.90
4016 5689 8.012957 ACTCTGGTTATCCATAGAGTACAAAG 57.987 38.462 11.27 0.00 43.11 2.77
4094 5772 7.445945 ACTCTCTGCATACCTGTAAATATTCC 58.554 38.462 0.00 0.00 0.00 3.01
4168 5846 5.822519 CCTACTGTATTTTGGCAAGAGCATA 59.177 40.000 0.00 0.00 44.61 3.14
4199 5877 5.441718 ACAGGAGAAAGAGATAATTGGCA 57.558 39.130 0.00 0.00 0.00 4.92
4203 5881 6.260493 CAGGAGAAAGAGATAATTGGCAAGAG 59.740 42.308 5.96 0.00 0.00 2.85
4214 5892 0.627451 TGGCAAGAGCATCAGGGAAT 59.373 50.000 0.00 0.00 44.61 3.01
4215 5893 1.316651 GGCAAGAGCATCAGGGAATC 58.683 55.000 0.00 0.00 44.61 2.52
4216 5894 1.133853 GGCAAGAGCATCAGGGAATCT 60.134 52.381 0.00 0.00 44.61 2.40
4217 5895 2.105477 GGCAAGAGCATCAGGGAATCTA 59.895 50.000 0.00 0.00 44.61 1.98
4219 5897 3.563390 GCAAGAGCATCAGGGAATCTAAC 59.437 47.826 0.00 0.00 41.58 2.34
4220 5898 4.774124 CAAGAGCATCAGGGAATCTAACA 58.226 43.478 0.00 0.00 37.82 2.41
4221 5899 5.188434 CAAGAGCATCAGGGAATCTAACAA 58.812 41.667 0.00 0.00 37.82 2.83
4224 5902 4.521146 AGCATCAGGGAATCTAACAAGTG 58.479 43.478 0.00 0.00 0.00 3.16
4225 5903 4.018960 AGCATCAGGGAATCTAACAAGTGT 60.019 41.667 0.00 0.00 0.00 3.55
4226 5904 4.702131 GCATCAGGGAATCTAACAAGTGTT 59.298 41.667 1.75 1.75 41.73 3.32
4228 5906 6.294731 GCATCAGGGAATCTAACAAGTGTTTT 60.295 38.462 1.35 0.00 39.31 2.43
4229 5907 7.661040 CATCAGGGAATCTAACAAGTGTTTTT 58.339 34.615 1.35 0.00 39.31 1.94
4262 5979 6.437793 ACCTCCATCTTATAGGGAATCTAACG 59.562 42.308 0.00 0.00 37.67 3.18
4330 6047 5.575157 TCTACTCACTGTCTTCATTCCTCT 58.425 41.667 0.00 0.00 0.00 3.69
4336 6053 6.169094 TCACTGTCTTCATTCCTCTGAAATC 58.831 40.000 0.00 0.00 34.86 2.17
4365 6082 1.080569 CTTTGTTGCGCACCATCCC 60.081 57.895 11.12 0.00 0.00 3.85
4379 6096 2.926329 ACCATCCCAGGGAATTACTTGT 59.074 45.455 13.94 0.00 34.34 3.16
4381 6098 3.290710 CATCCCAGGGAATTACTTGTGG 58.709 50.000 13.94 0.50 34.34 4.17
4406 6123 1.755179 ATTGGAGGATTTGGTCAGCG 58.245 50.000 0.00 0.00 0.00 5.18
4510 6230 5.440234 TGCGTGCTAATAAAGGAACAAAA 57.560 34.783 0.00 0.00 0.00 2.44
4511 6231 5.833082 TGCGTGCTAATAAAGGAACAAAAA 58.167 33.333 0.00 0.00 0.00 1.94
4517 6237 6.780522 TGCTAATAAAGGAACAAAAAGGGAGT 59.219 34.615 0.00 0.00 0.00 3.85
4518 6238 7.945664 TGCTAATAAAGGAACAAAAAGGGAGTA 59.054 33.333 0.00 0.00 0.00 2.59
4519 6239 8.967918 GCTAATAAAGGAACAAAAAGGGAGTAT 58.032 33.333 0.00 0.00 0.00 2.12
4524 6244 8.777578 AAAGGAACAAAAAGGGAGTATTAGTT 57.222 30.769 0.00 0.00 0.00 2.24
4525 6245 8.777578 AAGGAACAAAAAGGGAGTATTAGTTT 57.222 30.769 0.00 0.00 0.00 2.66
4526 6246 9.871175 AAGGAACAAAAAGGGAGTATTAGTTTA 57.129 29.630 0.00 0.00 0.00 2.01
4527 6247 9.293404 AGGAACAAAAAGGGAGTATTAGTTTAC 57.707 33.333 0.00 0.00 0.00 2.01
4528 6248 9.293404 GGAACAAAAAGGGAGTATTAGTTTACT 57.707 33.333 0.00 0.00 35.13 2.24
4542 6262 9.569167 GTATTAGTTTACTTTCAAATTCCCAGC 57.431 33.333 0.00 0.00 0.00 4.85
4543 6263 7.833285 TTAGTTTACTTTCAAATTCCCAGCT 57.167 32.000 0.00 0.00 0.00 4.24
4544 6264 8.927675 TTAGTTTACTTTCAAATTCCCAGCTA 57.072 30.769 0.00 0.00 0.00 3.32
4545 6265 7.833285 AGTTTACTTTCAAATTCCCAGCTAA 57.167 32.000 0.00 0.00 0.00 3.09
4546 6266 8.245195 AGTTTACTTTCAAATTCCCAGCTAAA 57.755 30.769 0.00 0.00 0.00 1.85
4547 6267 8.870116 AGTTTACTTTCAAATTCCCAGCTAAAT 58.130 29.630 0.00 0.00 0.00 1.40
4548 6268 8.925700 GTTTACTTTCAAATTCCCAGCTAAATG 58.074 33.333 0.00 0.00 0.00 2.32
4549 6269 6.041423 ACTTTCAAATTCCCAGCTAAATGG 57.959 37.500 0.00 0.00 40.29 3.16
4550 6270 4.470334 TTCAAATTCCCAGCTAAATGGC 57.530 40.909 0.00 0.00 39.17 4.40
4551 6271 3.711863 TCAAATTCCCAGCTAAATGGCT 58.288 40.909 0.00 0.00 44.10 4.75
4552 6272 4.095946 TCAAATTCCCAGCTAAATGGCTT 58.904 39.130 0.00 0.00 41.00 4.35
4553 6273 4.081531 TCAAATTCCCAGCTAAATGGCTTG 60.082 41.667 0.00 0.00 41.00 4.01
4554 6274 1.851304 TTCCCAGCTAAATGGCTTGG 58.149 50.000 2.86 2.86 43.79 3.61
4555 6275 0.684153 TCCCAGCTAAATGGCTTGGC 60.684 55.000 4.26 0.00 42.63 4.52
4556 6276 0.971959 CCCAGCTAAATGGCTTGGCA 60.972 55.000 0.00 0.00 43.70 4.92
4557 6277 0.896923 CCAGCTAAATGGCTTGGCAA 59.103 50.000 0.00 0.00 43.70 4.52
4558 6278 1.275856 CCAGCTAAATGGCTTGGCAAA 59.724 47.619 0.00 0.00 43.70 3.68
4559 6279 2.289569 CCAGCTAAATGGCTTGGCAAAA 60.290 45.455 0.00 0.00 43.70 2.44
4560 6280 2.738314 CAGCTAAATGGCTTGGCAAAAC 59.262 45.455 0.00 0.00 43.70 2.43
4561 6281 2.634453 AGCTAAATGGCTTGGCAAAACT 59.366 40.909 0.00 0.00 43.70 2.66
4562 6282 2.738314 GCTAAATGGCTTGGCAAAACTG 59.262 45.455 0.00 0.00 41.04 3.16
4563 6283 2.259266 AAATGGCTTGGCAAAACTGG 57.741 45.000 0.00 0.00 0.00 4.00
4564 6284 1.130777 AATGGCTTGGCAAAACTGGT 58.869 45.000 0.00 0.00 0.00 4.00
4565 6285 0.681175 ATGGCTTGGCAAAACTGGTC 59.319 50.000 0.00 0.00 0.00 4.02
4566 6286 1.367471 GGCTTGGCAAAACTGGTCC 59.633 57.895 0.00 0.00 0.00 4.46
4567 6287 1.398958 GGCTTGGCAAAACTGGTCCA 61.399 55.000 0.00 0.00 0.00 4.02
4568 6288 0.032540 GCTTGGCAAAACTGGTCCAG 59.967 55.000 17.88 17.88 37.52 3.86
4569 6289 0.032540 CTTGGCAAAACTGGTCCAGC 59.967 55.000 19.40 5.08 34.37 4.85
4570 6290 1.398958 TTGGCAAAACTGGTCCAGCC 61.399 55.000 19.40 14.97 42.32 4.85
4571 6291 2.574018 GGCAAAACTGGTCCAGCCC 61.574 63.158 19.40 7.92 36.17 5.19
4572 6292 2.574018 GCAAAACTGGTCCAGCCCC 61.574 63.158 19.40 0.00 34.37 5.80
4573 6293 1.152567 CAAAACTGGTCCAGCCCCA 60.153 57.895 19.40 0.00 34.37 4.96
4574 6294 1.152546 AAAACTGGTCCAGCCCCAC 60.153 57.895 19.40 0.00 34.37 4.61
4575 6295 2.656698 AAAACTGGTCCAGCCCCACC 62.657 60.000 19.40 0.00 34.37 4.61
4576 6296 4.599500 ACTGGTCCAGCCCCACCT 62.599 66.667 19.40 0.00 34.37 4.00
4577 6297 3.721706 CTGGTCCAGCCCCACCTC 61.722 72.222 5.79 0.00 36.04 3.85
4578 6298 4.270153 TGGTCCAGCCCCACCTCT 62.270 66.667 0.00 0.00 36.04 3.69
4579 6299 3.403558 GGTCCAGCCCCACCTCTC 61.404 72.222 0.00 0.00 0.00 3.20
4580 6300 2.607750 GTCCAGCCCCACCTCTCA 60.608 66.667 0.00 0.00 0.00 3.27
4581 6301 2.284921 TCCAGCCCCACCTCTCAG 60.285 66.667 0.00 0.00 0.00 3.35
4582 6302 2.608988 CCAGCCCCACCTCTCAGT 60.609 66.667 0.00 0.00 0.00 3.41
4583 6303 2.667418 CAGCCCCACCTCTCAGTG 59.333 66.667 0.00 0.00 37.51 3.66
4590 6310 4.239991 ACCTCTCAGTGGTGGCAT 57.760 55.556 0.00 0.00 36.30 4.40
4591 6311 3.399234 ACCTCTCAGTGGTGGCATA 57.601 52.632 0.00 0.00 36.30 3.14
4592 6312 1.656587 ACCTCTCAGTGGTGGCATAA 58.343 50.000 0.00 0.00 36.30 1.90
4593 6313 1.985159 ACCTCTCAGTGGTGGCATAAA 59.015 47.619 0.00 0.00 36.30 1.40
4594 6314 2.578021 ACCTCTCAGTGGTGGCATAAAT 59.422 45.455 0.00 0.00 36.30 1.40
4595 6315 2.947652 CCTCTCAGTGGTGGCATAAATG 59.052 50.000 0.00 0.00 0.00 2.32
4596 6316 2.947652 CTCTCAGTGGTGGCATAAATGG 59.052 50.000 0.00 0.00 0.00 3.16
4597 6317 2.575735 TCTCAGTGGTGGCATAAATGGA 59.424 45.455 0.00 0.00 0.00 3.41
4598 6318 3.010027 TCTCAGTGGTGGCATAAATGGAA 59.990 43.478 0.00 0.00 0.00 3.53
4599 6319 3.355378 TCAGTGGTGGCATAAATGGAAG 58.645 45.455 0.00 0.00 0.00 3.46
4600 6320 2.428171 CAGTGGTGGCATAAATGGAAGG 59.572 50.000 0.00 0.00 0.00 3.46
4601 6321 2.311542 AGTGGTGGCATAAATGGAAGGA 59.688 45.455 0.00 0.00 0.00 3.36
4602 6322 3.096092 GTGGTGGCATAAATGGAAGGAA 58.904 45.455 0.00 0.00 0.00 3.36
4603 6323 3.131046 GTGGTGGCATAAATGGAAGGAAG 59.869 47.826 0.00 0.00 0.00 3.46
4604 6324 3.011144 TGGTGGCATAAATGGAAGGAAGA 59.989 43.478 0.00 0.00 0.00 2.87
4605 6325 3.381590 GGTGGCATAAATGGAAGGAAGAC 59.618 47.826 0.00 0.00 0.00 3.01
4606 6326 4.016444 GTGGCATAAATGGAAGGAAGACA 58.984 43.478 0.00 0.00 0.00 3.41
4607 6327 4.096984 GTGGCATAAATGGAAGGAAGACAG 59.903 45.833 0.00 0.00 0.00 3.51
4608 6328 4.018506 TGGCATAAATGGAAGGAAGACAGA 60.019 41.667 0.00 0.00 0.00 3.41
4609 6329 4.949856 GGCATAAATGGAAGGAAGACAGAA 59.050 41.667 0.00 0.00 0.00 3.02
4610 6330 5.418840 GGCATAAATGGAAGGAAGACAGAAA 59.581 40.000 0.00 0.00 0.00 2.52
4611 6331 6.071391 GGCATAAATGGAAGGAAGACAGAAAA 60.071 38.462 0.00 0.00 0.00 2.29
4612 6332 7.031975 GCATAAATGGAAGGAAGACAGAAAAG 58.968 38.462 0.00 0.00 0.00 2.27
4613 6333 5.459536 AAATGGAAGGAAGACAGAAAAGC 57.540 39.130 0.00 0.00 0.00 3.51
4614 6334 3.864789 TGGAAGGAAGACAGAAAAGCT 57.135 42.857 0.00 0.00 0.00 3.74
4615 6335 4.974645 TGGAAGGAAGACAGAAAAGCTA 57.025 40.909 0.00 0.00 0.00 3.32
4616 6336 4.642429 TGGAAGGAAGACAGAAAAGCTAC 58.358 43.478 0.00 0.00 0.00 3.58
4617 6337 4.004314 GGAAGGAAGACAGAAAAGCTACC 58.996 47.826 0.00 0.00 0.00 3.18
4618 6338 3.704800 AGGAAGACAGAAAAGCTACCC 57.295 47.619 0.00 0.00 0.00 3.69
4619 6339 2.306219 AGGAAGACAGAAAAGCTACCCC 59.694 50.000 0.00 0.00 0.00 4.95
4620 6340 2.618302 GGAAGACAGAAAAGCTACCCCC 60.618 54.545 0.00 0.00 0.00 5.40
4621 6341 2.046280 AGACAGAAAAGCTACCCCCT 57.954 50.000 0.00 0.00 0.00 4.79
4622 6342 2.349445 AGACAGAAAAGCTACCCCCTT 58.651 47.619 0.00 0.00 0.00 3.95
4623 6343 2.306219 AGACAGAAAAGCTACCCCCTTC 59.694 50.000 0.00 0.00 0.00 3.46
4624 6344 2.306219 GACAGAAAAGCTACCCCCTTCT 59.694 50.000 0.00 0.00 0.00 2.85
4625 6345 3.518303 GACAGAAAAGCTACCCCCTTCTA 59.482 47.826 0.00 0.00 0.00 2.10
4626 6346 3.914435 ACAGAAAAGCTACCCCCTTCTAA 59.086 43.478 0.00 0.00 0.00 2.10
4627 6347 4.352893 ACAGAAAAGCTACCCCCTTCTAAA 59.647 41.667 0.00 0.00 0.00 1.85
4628 6348 5.163023 ACAGAAAAGCTACCCCCTTCTAAAA 60.163 40.000 0.00 0.00 0.00 1.52
4629 6349 5.773176 CAGAAAAGCTACCCCCTTCTAAAAA 59.227 40.000 0.00 0.00 0.00 1.94
4651 6371 6.949578 AAAAACATAAAATCATGAGTGCGG 57.050 33.333 0.09 0.00 0.00 5.69
4652 6372 3.698029 ACATAAAATCATGAGTGCGGC 57.302 42.857 0.09 0.00 0.00 6.53
4653 6373 2.032054 ACATAAAATCATGAGTGCGGCG 59.968 45.455 0.51 0.51 0.00 6.46
4654 6374 2.017138 TAAAATCATGAGTGCGGCGA 57.983 45.000 12.98 0.00 0.00 5.54
4655 6375 1.164411 AAAATCATGAGTGCGGCGAA 58.836 45.000 12.98 0.00 0.00 4.70
4656 6376 1.382522 AAATCATGAGTGCGGCGAAT 58.617 45.000 12.98 0.00 0.00 3.34
4657 6377 0.940126 AATCATGAGTGCGGCGAATC 59.060 50.000 12.98 5.16 0.00 2.52
4658 6378 0.105593 ATCATGAGTGCGGCGAATCT 59.894 50.000 12.98 4.64 0.00 2.40
4659 6379 0.807275 TCATGAGTGCGGCGAATCTG 60.807 55.000 12.98 5.48 0.00 2.90
4669 6389 4.473520 CGAATCTGCACCCGGGCT 62.474 66.667 24.08 4.79 34.04 5.19
4670 6390 2.514824 GAATCTGCACCCGGGCTC 60.515 66.667 24.08 13.62 34.04 4.70
4671 6391 3.329542 GAATCTGCACCCGGGCTCA 62.330 63.158 24.08 17.97 34.04 4.26
4672 6392 3.335356 AATCTGCACCCGGGCTCAG 62.335 63.158 27.84 27.84 34.04 3.35
4685 6405 4.694233 CTCAGCTGCACCCACGCT 62.694 66.667 9.47 0.00 0.00 5.07
4686 6406 4.687215 TCAGCTGCACCCACGCTC 62.687 66.667 9.47 0.00 0.00 5.03
4687 6407 4.994471 CAGCTGCACCCACGCTCA 62.994 66.667 0.00 0.00 0.00 4.26
4688 6408 4.996434 AGCTGCACCCACGCTCAC 62.996 66.667 1.02 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 2.704464 TGCTCATGTCAGGGATTCAG 57.296 50.000 0.00 0.00 0.00 3.02
76 77 1.596477 GACCCTGATGATCCGCTGC 60.596 63.158 0.00 0.00 0.00 5.25
105 106 2.226962 TAGTACGGCCTTTCTCCAGT 57.773 50.000 0.00 0.00 0.00 4.00
211 219 2.440430 TTCTCCCTCGCCTCGGAG 60.440 66.667 0.00 0.00 46.07 4.63
254 262 2.284995 GGGCAGAGGACAGAGGGT 60.285 66.667 0.00 0.00 0.00 4.34
342 356 5.584442 CGTGCTGTTACAGTACATGGTATA 58.416 41.667 27.50 0.00 45.03 1.47
347 361 1.393539 GGCGTGCTGTTACAGTACATG 59.606 52.381 27.50 17.45 45.03 3.21
348 362 1.722011 GGCGTGCTGTTACAGTACAT 58.278 50.000 27.50 0.00 45.03 2.29
349 363 0.665068 CGGCGTGCTGTTACAGTACA 60.665 55.000 27.50 10.81 45.03 2.90
350 364 1.952266 GCGGCGTGCTGTTACAGTAC 61.952 60.000 20.82 20.82 42.21 2.73
351 365 1.735198 GCGGCGTGCTGTTACAGTA 60.735 57.895 14.23 6.64 41.73 2.74
438 458 6.260050 GGAGCACGAATTGATAAGGATAACAA 59.740 38.462 0.00 0.00 0.00 2.83
455 477 1.971167 GCAAACATGGGGAGCACGA 60.971 57.895 0.00 0.00 0.00 4.35
477 499 1.973515 ACATGCATAGCTAGCAGCCTA 59.026 47.619 18.83 0.00 46.36 3.93
478 500 0.763652 ACATGCATAGCTAGCAGCCT 59.236 50.000 18.83 8.06 46.36 4.58
479 501 1.266175 CAACATGCATAGCTAGCAGCC 59.734 52.381 18.83 2.61 46.36 4.85
480 502 1.945394 ACAACATGCATAGCTAGCAGC 59.055 47.619 18.83 17.65 46.36 5.25
481 503 3.200483 TGACAACATGCATAGCTAGCAG 58.800 45.455 18.83 7.50 46.36 4.24
508 535 1.001068 GATCGGGTTCCTAGCTTAGGC 59.999 57.143 0.00 0.00 45.82 3.93
524 551 1.157870 AAAATAGGCGCACCGGATCG 61.158 55.000 9.46 12.45 42.76 3.69
533 560 3.833442 AGCTTGTAAACAAAATAGGCGC 58.167 40.909 0.00 0.00 35.15 6.53
549 576 4.454678 TGATGAAATAGGGTGCTAGCTTG 58.545 43.478 17.23 0.00 0.00 4.01
550 577 4.778213 TGATGAAATAGGGTGCTAGCTT 57.222 40.909 17.23 0.00 0.00 3.74
552 579 5.312079 AGATTGATGAAATAGGGTGCTAGC 58.688 41.667 8.10 8.10 0.00 3.42
553 580 6.528321 TGAGATTGATGAAATAGGGTGCTAG 58.472 40.000 0.00 0.00 0.00 3.42
554 581 6.499106 TGAGATTGATGAAATAGGGTGCTA 57.501 37.500 0.00 0.00 0.00 3.49
557 584 7.395190 TTGTTGAGATTGATGAAATAGGGTG 57.605 36.000 0.00 0.00 0.00 4.61
558 585 6.604795 CCTTGTTGAGATTGATGAAATAGGGT 59.395 38.462 0.00 0.00 0.00 4.34
591 1825 4.090090 AGTAATATGGATCGGAGGGAGTG 58.910 47.826 0.00 0.00 0.00 3.51
593 1827 4.528596 ACAAGTAATATGGATCGGAGGGAG 59.471 45.833 0.00 0.00 0.00 4.30
594 1828 4.489737 ACAAGTAATATGGATCGGAGGGA 58.510 43.478 0.00 0.00 0.00 4.20
595 1829 4.618460 CGACAAGTAATATGGATCGGAGGG 60.618 50.000 0.00 0.00 0.00 4.30
596 1830 4.486090 CGACAAGTAATATGGATCGGAGG 58.514 47.826 0.00 0.00 0.00 4.30
597 1831 3.921021 GCGACAAGTAATATGGATCGGAG 59.079 47.826 0.00 0.00 0.00 4.63
599 1833 2.993899 GGCGACAAGTAATATGGATCGG 59.006 50.000 0.00 0.00 0.00 4.18
601 1835 3.909430 TCGGCGACAAGTAATATGGATC 58.091 45.455 4.99 0.00 0.00 3.36
602 1836 4.537135 ATCGGCGACAAGTAATATGGAT 57.463 40.909 13.76 0.00 0.00 3.41
604 1838 5.694910 ACTAAATCGGCGACAAGTAATATGG 59.305 40.000 13.76 0.00 0.00 2.74
605 1839 6.764877 ACTAAATCGGCGACAAGTAATATG 57.235 37.500 13.76 0.00 0.00 1.78
607 1841 6.794374 TGTACTAAATCGGCGACAAGTAATA 58.206 36.000 21.84 14.60 0.00 0.98
613 1847 3.916761 AGTTGTACTAAATCGGCGACAA 58.083 40.909 13.76 7.96 0.00 3.18
615 1849 4.916099 AAAGTTGTACTAAATCGGCGAC 57.084 40.909 13.76 0.00 0.00 5.19
616 1850 8.876275 ATATTAAAGTTGTACTAAATCGGCGA 57.124 30.769 13.87 13.87 0.00 5.54
640 1874 9.851686 TTTGATTCCAAGATAATACAGCTGTAT 57.148 29.630 29.70 29.70 36.91 2.29
641 1875 9.109393 GTTTGATTCCAAGATAATACAGCTGTA 57.891 33.333 27.91 27.91 33.23 2.74
642 1876 7.831193 AGTTTGATTCCAAGATAATACAGCTGT 59.169 33.333 25.12 25.12 33.23 4.40
643 1877 8.218338 AGTTTGATTCCAAGATAATACAGCTG 57.782 34.615 13.48 13.48 33.23 4.24
644 1878 8.814038 AAGTTTGATTCCAAGATAATACAGCT 57.186 30.769 0.00 0.00 33.23 4.24
645 1879 9.294030 CAAAGTTTGATTCCAAGATAATACAGC 57.706 33.333 10.19 0.00 33.23 4.40
648 1882 9.076596 GCACAAAGTTTGATTCCAAGATAATAC 57.923 33.333 22.23 0.00 33.23 1.89
649 1883 8.801299 TGCACAAAGTTTGATTCCAAGATAATA 58.199 29.630 22.23 0.00 33.23 0.98
650 1884 7.599998 GTGCACAAAGTTTGATTCCAAGATAAT 59.400 33.333 22.23 0.00 33.23 1.28
651 1885 6.922957 GTGCACAAAGTTTGATTCCAAGATAA 59.077 34.615 22.23 0.00 33.23 1.75
652 1886 6.040278 TGTGCACAAAGTTTGATTCCAAGATA 59.960 34.615 19.28 0.00 33.23 1.98
653 1887 5.163426 TGTGCACAAAGTTTGATTCCAAGAT 60.163 36.000 19.28 0.00 33.23 2.40
654 1888 4.159321 TGTGCACAAAGTTTGATTCCAAGA 59.841 37.500 19.28 0.00 33.23 3.02
655 1889 4.268405 GTGTGCACAAAGTTTGATTCCAAG 59.732 41.667 23.59 4.22 33.23 3.61
656 1890 4.180057 GTGTGCACAAAGTTTGATTCCAA 58.820 39.130 23.59 0.68 0.00 3.53
657 1891 3.194329 TGTGTGCACAAAGTTTGATTCCA 59.806 39.130 23.59 7.72 38.56 3.53
658 1892 3.779759 TGTGTGCACAAAGTTTGATTCC 58.220 40.909 23.59 4.84 38.56 3.01
672 1906 3.141398 GAGAATTCACCTCTTGTGTGCA 58.859 45.455 8.44 0.00 45.61 4.57
681 1915 6.705381 CCTTCACATATGAGAGAATTCACCTC 59.295 42.308 10.38 16.44 35.83 3.85
682 1916 6.590068 CCTTCACATATGAGAGAATTCACCT 58.410 40.000 10.38 4.13 35.83 4.00
737 1988 8.938906 GTCCCGATTAACTGAAAATAGTTACAA 58.061 33.333 0.00 0.00 41.46 2.41
743 1997 4.809426 AGCGTCCCGATTAACTGAAAATAG 59.191 41.667 0.00 0.00 0.00 1.73
769 2023 5.976458 TCCTTTTTCAAGTTTGCACTCAAT 58.024 33.333 0.00 0.00 30.45 2.57
801 2056 4.220382 TCTTGGTGTAAATGATGCCCTTTG 59.780 41.667 0.00 0.00 0.00 2.77
807 2062 8.623903 TCTTGATAATCTTGGTGTAAATGATGC 58.376 33.333 0.00 0.00 0.00 3.91
810 2065 8.049117 AGCTCTTGATAATCTTGGTGTAAATGA 58.951 33.333 0.00 0.00 0.00 2.57
813 2068 6.599244 CCAGCTCTTGATAATCTTGGTGTAAA 59.401 38.462 0.00 0.00 0.00 2.01
814 2069 6.070251 TCCAGCTCTTGATAATCTTGGTGTAA 60.070 38.462 0.00 0.00 0.00 2.41
821 2397 6.825721 ACGAAATTCCAGCTCTTGATAATCTT 59.174 34.615 0.00 0.00 0.00 2.40
845 2421 5.144359 CGTGAACTTGTTGCCAAATAGTAC 58.856 41.667 0.00 0.00 0.00 2.73
868 2444 2.493278 AGTCAATGGTGTTGGCTAATGC 59.507 45.455 0.00 0.00 31.79 3.56
937 2516 0.671781 CGGTTGAGCCTGGACAAGAG 60.672 60.000 0.00 0.00 34.25 2.85
956 2539 1.032014 TTTGTCAGCCCTTGTGCTTC 58.968 50.000 0.00 0.00 40.32 3.86
1027 2615 0.030638 CTTGGCAAACGTGTCCTTGG 59.969 55.000 0.00 0.00 0.00 3.61
1056 2650 1.862827 GTTATCAACCGATACCGTGGC 59.137 52.381 0.00 0.00 33.74 5.01
1083 2677 4.274214 CGAAGAATCAGGCAAAGCATATCA 59.726 41.667 0.00 0.00 0.00 2.15
1109 2703 1.578206 GGCAACCACTTCGCCTTCTC 61.578 60.000 0.00 0.00 42.78 2.87
1137 2731 0.555769 TCTTTCCCAAGCCACCAGTT 59.444 50.000 0.00 0.00 0.00 3.16
1188 2782 2.218603 TCAAAGCGGTTTGAGTTCCTC 58.781 47.619 32.56 0.00 45.82 3.71
1200 2794 4.223032 ACCCAGATATAGGTATCAAAGCGG 59.777 45.833 0.00 0.00 39.36 5.52
1246 2840 1.728971 CTTCTCAATGCACCGTCTCAC 59.271 52.381 0.00 0.00 0.00 3.51
1320 2914 1.211212 TGCTCCTTGATCATCACCCTG 59.789 52.381 0.00 0.00 0.00 4.45
1368 2962 3.806316 ACAAAATAAGCGTTGTCGAGG 57.194 42.857 0.00 0.00 39.71 4.63
1377 2971 6.863126 AGATGTTTTCCTCAACAAAATAAGCG 59.137 34.615 0.00 0.00 40.07 4.68
1389 2983 5.677319 AGATCCGTAAGATGTTTTCCTCA 57.323 39.130 0.00 0.00 43.02 3.86
1586 3180 4.109766 GCCAAAACAGTTGTCAACTAACC 58.890 43.478 17.76 0.06 40.46 2.85
1641 3235 0.239347 GTTCAGGCACATCACACAGC 59.761 55.000 0.00 0.00 0.00 4.40
1658 3252 6.929606 ACTTATTAACTTGCTCGACTTCTGTT 59.070 34.615 0.00 0.00 0.00 3.16
1662 3256 6.946229 TCACTTATTAACTTGCTCGACTTC 57.054 37.500 0.00 0.00 0.00 3.01
1663 3257 6.128526 GCTTCACTTATTAACTTGCTCGACTT 60.129 38.462 0.00 0.00 0.00 3.01
1725 3322 4.941263 AGCTTTACAAGGCGAATCATTGTA 59.059 37.500 0.00 0.00 46.50 2.41
1747 3344 1.500396 GAAGCCGGCGGTAACAAAG 59.500 57.895 28.82 0.00 0.00 2.77
1770 3367 2.176273 GCAGTGCCTGGCAGTATCG 61.176 63.158 27.51 16.92 40.54 2.92
1794 3391 2.427812 GTCAGGGAAGAGTAGGCAGTAC 59.572 54.545 0.00 0.00 0.00 2.73
1881 3484 5.046014 ACAGTTAGCCTGATGAGAATGTCTT 60.046 40.000 0.00 0.00 44.49 3.01
1885 3488 5.233050 CGTAACAGTTAGCCTGATGAGAATG 59.767 44.000 0.00 0.00 44.49 2.67
2019 3622 0.940126 GCTCCACATAGCCATTGTCG 59.060 55.000 0.00 0.00 36.45 4.35
2134 3737 0.588252 CTTGGACTTGCACGGAGTTG 59.412 55.000 0.00 0.00 41.61 3.16
2174 3777 3.881937 TCCCTCTTAAAAGTAGCGTCC 57.118 47.619 0.00 0.00 0.00 4.79
2221 3824 3.644966 TCCCAGACGGCAGAAAAATAT 57.355 42.857 0.00 0.00 0.00 1.28
2222 3825 3.426787 TTCCCAGACGGCAGAAAAATA 57.573 42.857 0.00 0.00 0.00 1.40
2236 3839 0.252479 AGCACTCTCAGCATTCCCAG 59.748 55.000 0.00 0.00 0.00 4.45
2247 3850 2.137810 AGGACAGGTCTAGCACTCTC 57.862 55.000 0.00 0.00 0.00 3.20
2272 3875 1.404391 CTGTGGCAGGATTCTGATTGC 59.596 52.381 4.75 0.00 43.49 3.56
2289 3892 6.884836 GGTAATAAAGACCAGAAATGGACTGT 59.115 38.462 0.31 0.00 36.91 3.55
2342 3945 4.263905 TGTGCTGAATTTCCTCCAGGTATT 60.264 41.667 0.00 0.00 36.34 1.89
2344 3947 2.642311 TGTGCTGAATTTCCTCCAGGTA 59.358 45.455 0.00 0.00 36.34 3.08
2353 3956 2.286654 GCGAGCCTATGTGCTGAATTTC 60.287 50.000 0.00 0.00 42.95 2.17
2522 4125 2.546368 TGTAGCGCAAGTTGGTTAAGTG 59.454 45.455 11.47 0.00 41.68 3.16
2752 4358 3.056107 TGGTTTACATCTTGAGAGACCCG 60.056 47.826 0.00 0.00 33.99 5.28
2908 4521 4.019174 CTCCATACTCCAAAGCCATTGTT 58.981 43.478 0.00 0.00 37.32 2.83
2952 4568 0.250252 TGAAATCACAGGACTGCGCA 60.250 50.000 10.98 10.98 0.00 6.09
2962 4578 6.310941 TCTCCAAAACCCTATTGAAATCACA 58.689 36.000 0.00 0.00 0.00 3.58
2971 4587 7.238710 ACACAGTTTATCTCCAAAACCCTATT 58.761 34.615 0.00 0.00 37.51 1.73
3016 4632 3.260884 TCAGCGTGTCTAAGAATCCCTTT 59.739 43.478 0.00 0.00 36.34 3.11
3100 4716 1.160329 AGTTCTTGTGCCGCTGTCAC 61.160 55.000 0.00 0.00 35.14 3.67
3108 4727 2.814336 CTCTACCCAAAGTTCTTGTGCC 59.186 50.000 0.00 0.00 0.00 5.01
3336 4971 7.336396 ACCTTATTTGTAGGCTACGAAGATTT 58.664 34.615 26.68 15.66 35.64 2.17
3371 5006 2.307768 TGTCGAACACTCTCTCCAAGT 58.692 47.619 0.00 0.00 0.00 3.16
3400 5046 3.296709 GAAGAGCCTGTTCCGCGGA 62.297 63.158 27.28 27.28 0.00 5.54
3411 5057 0.320697 ACTGTAACCGTGGAAGAGCC 59.679 55.000 0.00 0.00 37.10 4.70
3421 5067 2.730672 GCTGCAGCGACTGTAACCG 61.731 63.158 25.23 0.00 33.43 4.44
3472 5118 3.966930 GAGACGGCAGGACCCCTCT 62.967 68.421 0.00 0.00 33.81 3.69
3532 5178 2.267961 GGTGACACCGATGGGGAC 59.732 66.667 9.33 0.00 39.97 4.46
3741 5394 3.882888 CCAACACCTCAAAAGCAACTCTA 59.117 43.478 0.00 0.00 0.00 2.43
3768 5421 1.139095 CGAGCTTACCCGACAGACC 59.861 63.158 0.00 0.00 0.00 3.85
3785 5438 1.300931 CACCACACCTCCTGTCACG 60.301 63.158 0.00 0.00 0.00 4.35
3799 5452 1.882311 CGCCAAATGCTAAGCACCA 59.118 52.632 0.00 0.00 43.04 4.17
3800 5453 1.517039 GCGCCAAATGCTAAGCACC 60.517 57.895 0.00 0.00 43.04 5.01
3804 5457 1.226773 GCTGGCGCCAAATGCTAAG 60.227 57.895 32.09 17.17 38.05 2.18
3873 5537 1.079819 CGTCGAGGAGTGCCACAAT 60.080 57.895 0.00 0.00 36.29 2.71
3881 5545 0.885879 TATGTTGCACGTCGAGGAGT 59.114 50.000 12.85 0.00 0.00 3.85
3897 5561 1.191535 TGGGGACGACCTCAAGTATG 58.808 55.000 3.27 0.00 44.62 2.39
3898 5562 3.703804 TGGGGACGACCTCAAGTAT 57.296 52.632 3.27 0.00 44.62 2.12
3903 5567 2.550456 TACCCTGGGGACGACCTCA 61.550 63.158 18.88 6.28 45.51 3.86
3904 5568 2.056815 GTACCCTGGGGACGACCTC 61.057 68.421 13.51 0.00 40.03 3.85
3910 5574 1.224592 CAGCATGTACCCTGGGGAC 59.775 63.158 21.95 21.95 38.96 4.46
3939 5603 3.365265 GCAGGGAGCACAAACCGG 61.365 66.667 0.00 0.00 44.79 5.28
4016 5689 5.147162 CAACCTTTGAAGTTATTCGAGTGC 58.853 41.667 0.00 0.00 38.34 4.40
4055 5733 3.702045 GCAGAGAGTACAGGAGGTGTTAT 59.298 47.826 0.00 0.00 40.94 1.89
4062 5740 3.317711 CAGGTATGCAGAGAGTACAGGAG 59.682 52.174 0.00 0.00 0.00 3.69
4126 5804 6.901300 ACAGTAGGGAAAGGATCATAGTGTTA 59.099 38.462 0.00 0.00 34.35 2.41
4127 5805 5.726793 ACAGTAGGGAAAGGATCATAGTGTT 59.273 40.000 0.00 0.00 34.35 3.32
4128 5806 5.281314 ACAGTAGGGAAAGGATCATAGTGT 58.719 41.667 0.00 0.00 33.73 3.55
4199 5877 5.045286 ACTTGTTAGATTCCCTGATGCTCTT 60.045 40.000 0.00 0.00 0.00 2.85
4203 5881 4.265073 ACACTTGTTAGATTCCCTGATGC 58.735 43.478 0.00 0.00 0.00 3.91
4216 5894 9.589111 GGAGGTCAAAATTAAAAACACTTGTTA 57.411 29.630 0.00 0.00 37.25 2.41
4217 5895 8.097662 TGGAGGTCAAAATTAAAAACACTTGTT 58.902 29.630 0.00 0.00 40.50 2.83
4219 5897 8.661352 ATGGAGGTCAAAATTAAAAACACTTG 57.339 30.769 0.00 0.00 0.00 3.16
4220 5898 8.704668 AGATGGAGGTCAAAATTAAAAACACTT 58.295 29.630 0.00 0.00 0.00 3.16
4221 5899 8.250143 AGATGGAGGTCAAAATTAAAAACACT 57.750 30.769 0.00 0.00 0.00 3.55
4228 5906 9.009675 TCCCTATAAGATGGAGGTCAAAATTAA 57.990 33.333 0.00 0.00 0.00 1.40
4229 5907 8.575736 TCCCTATAAGATGGAGGTCAAAATTA 57.424 34.615 0.00 0.00 0.00 1.40
4262 5979 7.759433 TCTCAAAGGAACAAAATTCAAACACTC 59.241 33.333 0.00 0.00 0.00 3.51
4300 6017 5.007034 TGAAGACAGTGAGTAGAGAGAAGG 58.993 45.833 0.00 0.00 0.00 3.46
4330 6047 9.340695 CGCAACAAAGTAAATTCATAGATTTCA 57.659 29.630 0.00 0.00 31.96 2.69
4336 6053 5.286082 GGTGCGCAACAAAGTAAATTCATAG 59.714 40.000 23.15 0.00 0.00 2.23
4365 6082 7.981225 CCAATAAATTCCACAAGTAATTCCCTG 59.019 37.037 0.00 0.00 0.00 4.45
4379 6096 6.259893 TGACCAAATCCTCCAATAAATTCCA 58.740 36.000 0.00 0.00 0.00 3.53
4381 6098 6.276091 GCTGACCAAATCCTCCAATAAATTC 58.724 40.000 0.00 0.00 0.00 2.17
4406 6123 3.118261 TGGAGGGAGTATTGAGTTGCATC 60.118 47.826 0.00 0.00 0.00 3.91
4453 6172 6.381801 ACAATTCGGAACTTCAGCAATAAAG 58.618 36.000 0.00 0.00 0.00 1.85
4456 6175 6.092122 CACTACAATTCGGAACTTCAGCAATA 59.908 38.462 0.00 0.00 0.00 1.90
4457 6176 5.003804 ACTACAATTCGGAACTTCAGCAAT 58.996 37.500 0.00 0.00 0.00 3.56
4463 6182 2.474032 GCGCACTACAATTCGGAACTTC 60.474 50.000 0.30 0.00 0.00 3.01
4517 6237 9.528489 AGCTGGGAATTTGAAAGTAAACTAATA 57.472 29.630 0.00 0.00 0.00 0.98
4518 6238 8.422577 AGCTGGGAATTTGAAAGTAAACTAAT 57.577 30.769 0.00 0.00 0.00 1.73
4519 6239 7.833285 AGCTGGGAATTTGAAAGTAAACTAA 57.167 32.000 0.00 0.00 0.00 2.24
4520 6240 8.927675 TTAGCTGGGAATTTGAAAGTAAACTA 57.072 30.769 0.00 0.00 0.00 2.24
4521 6241 7.833285 TTAGCTGGGAATTTGAAAGTAAACT 57.167 32.000 0.00 0.00 0.00 2.66
4522 6242 8.925700 CATTTAGCTGGGAATTTGAAAGTAAAC 58.074 33.333 0.00 0.00 0.00 2.01
4523 6243 8.093927 CCATTTAGCTGGGAATTTGAAAGTAAA 58.906 33.333 0.00 0.00 32.28 2.01
4524 6244 7.610865 CCATTTAGCTGGGAATTTGAAAGTAA 58.389 34.615 0.00 0.00 32.28 2.24
4525 6245 6.350949 GCCATTTAGCTGGGAATTTGAAAGTA 60.351 38.462 0.00 0.00 36.75 2.24
4526 6246 5.569428 GCCATTTAGCTGGGAATTTGAAAGT 60.569 40.000 0.00 0.00 36.75 2.66
4527 6247 4.872124 GCCATTTAGCTGGGAATTTGAAAG 59.128 41.667 0.00 0.00 36.75 2.62
4528 6248 4.531732 AGCCATTTAGCTGGGAATTTGAAA 59.468 37.500 0.00 0.00 42.95 2.69
4529 6249 4.095946 AGCCATTTAGCTGGGAATTTGAA 58.904 39.130 0.00 0.00 42.95 2.69
4530 6250 3.711863 AGCCATTTAGCTGGGAATTTGA 58.288 40.909 0.00 0.00 42.95 2.69
4531 6251 4.186159 CAAGCCATTTAGCTGGGAATTTG 58.814 43.478 0.00 0.00 44.11 2.32
4532 6252 4.476628 CAAGCCATTTAGCTGGGAATTT 57.523 40.909 0.00 0.00 44.11 1.82
4538 6258 0.896923 TTGCCAAGCCATTTAGCTGG 59.103 50.000 0.00 0.00 44.11 4.85
4539 6259 2.738314 GTTTTGCCAAGCCATTTAGCTG 59.262 45.455 0.00 0.00 44.11 4.24
4541 6261 2.738314 CAGTTTTGCCAAGCCATTTAGC 59.262 45.455 0.00 0.00 0.00 3.09
4542 6262 3.244181 ACCAGTTTTGCCAAGCCATTTAG 60.244 43.478 0.00 0.00 0.00 1.85
4543 6263 2.703007 ACCAGTTTTGCCAAGCCATTTA 59.297 40.909 0.00 0.00 0.00 1.40
4544 6264 1.490069 ACCAGTTTTGCCAAGCCATTT 59.510 42.857 0.00 0.00 0.00 2.32
4545 6265 1.070601 GACCAGTTTTGCCAAGCCATT 59.929 47.619 0.00 0.00 0.00 3.16
4546 6266 0.681175 GACCAGTTTTGCCAAGCCAT 59.319 50.000 0.00 0.00 0.00 4.40
4547 6267 1.398958 GGACCAGTTTTGCCAAGCCA 61.399 55.000 0.00 0.00 0.00 4.75
4548 6268 1.367471 GGACCAGTTTTGCCAAGCC 59.633 57.895 0.00 0.00 0.00 4.35
4549 6269 0.032540 CTGGACCAGTTTTGCCAAGC 59.967 55.000 13.84 0.00 0.00 4.01
4550 6270 0.032540 GCTGGACCAGTTTTGCCAAG 59.967 55.000 22.58 0.00 33.43 3.61
4551 6271 1.398958 GGCTGGACCAGTTTTGCCAA 61.399 55.000 22.58 0.00 40.04 4.52
4552 6272 1.832167 GGCTGGACCAGTTTTGCCA 60.832 57.895 22.58 0.00 40.04 4.92
4553 6273 2.574018 GGGCTGGACCAGTTTTGCC 61.574 63.158 22.58 17.19 42.05 4.52
4554 6274 2.574018 GGGGCTGGACCAGTTTTGC 61.574 63.158 22.58 8.71 42.05 3.68
4555 6275 1.152567 TGGGGCTGGACCAGTTTTG 60.153 57.895 22.58 0.00 42.05 2.44
4556 6276 1.152546 GTGGGGCTGGACCAGTTTT 60.153 57.895 22.58 0.00 42.05 2.43
4557 6277 2.520968 GTGGGGCTGGACCAGTTT 59.479 61.111 22.58 0.00 42.05 2.66
4558 6278 3.580319 GGTGGGGCTGGACCAGTT 61.580 66.667 22.58 0.00 42.05 3.16
4559 6279 4.599500 AGGTGGGGCTGGACCAGT 62.599 66.667 22.58 0.00 42.05 4.00
4560 6280 3.721706 GAGGTGGGGCTGGACCAG 61.722 72.222 17.83 17.83 42.05 4.00
4561 6281 4.270153 AGAGGTGGGGCTGGACCA 62.270 66.667 0.00 0.00 42.05 4.02
4562 6282 3.403558 GAGAGGTGGGGCTGGACC 61.404 72.222 0.00 0.00 37.93 4.46
4563 6283 2.607750 TGAGAGGTGGGGCTGGAC 60.608 66.667 0.00 0.00 0.00 4.02
4564 6284 2.284921 CTGAGAGGTGGGGCTGGA 60.285 66.667 0.00 0.00 0.00 3.86
4565 6285 2.608988 ACTGAGAGGTGGGGCTGG 60.609 66.667 0.00 0.00 0.00 4.85
4566 6286 2.667418 CACTGAGAGGTGGGGCTG 59.333 66.667 0.00 0.00 33.95 4.85
4573 6293 1.656587 TTATGCCACCACTGAGAGGT 58.343 50.000 0.00 0.00 40.85 3.85
4574 6294 2.787473 TTTATGCCACCACTGAGAGG 57.213 50.000 0.00 0.00 0.00 3.69
4575 6295 2.947652 CCATTTATGCCACCACTGAGAG 59.052 50.000 0.00 0.00 0.00 3.20
4576 6296 2.575735 TCCATTTATGCCACCACTGAGA 59.424 45.455 0.00 0.00 0.00 3.27
4577 6297 3.003394 TCCATTTATGCCACCACTGAG 57.997 47.619 0.00 0.00 0.00 3.35
4578 6298 3.355378 CTTCCATTTATGCCACCACTGA 58.645 45.455 0.00 0.00 0.00 3.41
4579 6299 2.428171 CCTTCCATTTATGCCACCACTG 59.572 50.000 0.00 0.00 0.00 3.66
4580 6300 2.311542 TCCTTCCATTTATGCCACCACT 59.688 45.455 0.00 0.00 0.00 4.00
4581 6301 2.733956 TCCTTCCATTTATGCCACCAC 58.266 47.619 0.00 0.00 0.00 4.16
4582 6302 3.011144 TCTTCCTTCCATTTATGCCACCA 59.989 43.478 0.00 0.00 0.00 4.17
4583 6303 3.381590 GTCTTCCTTCCATTTATGCCACC 59.618 47.826 0.00 0.00 0.00 4.61
4584 6304 4.016444 TGTCTTCCTTCCATTTATGCCAC 58.984 43.478 0.00 0.00 0.00 5.01
4585 6305 4.018506 TCTGTCTTCCTTCCATTTATGCCA 60.019 41.667 0.00 0.00 0.00 4.92
4586 6306 4.526970 TCTGTCTTCCTTCCATTTATGCC 58.473 43.478 0.00 0.00 0.00 4.40
4587 6307 6.515272 TTTCTGTCTTCCTTCCATTTATGC 57.485 37.500 0.00 0.00 0.00 3.14
4588 6308 7.031975 GCTTTTCTGTCTTCCTTCCATTTATG 58.968 38.462 0.00 0.00 0.00 1.90
4589 6309 6.950619 AGCTTTTCTGTCTTCCTTCCATTTAT 59.049 34.615 0.00 0.00 0.00 1.40
4590 6310 6.306987 AGCTTTTCTGTCTTCCTTCCATTTA 58.693 36.000 0.00 0.00 0.00 1.40
4591 6311 5.143369 AGCTTTTCTGTCTTCCTTCCATTT 58.857 37.500 0.00 0.00 0.00 2.32
4592 6312 4.734266 AGCTTTTCTGTCTTCCTTCCATT 58.266 39.130 0.00 0.00 0.00 3.16
4593 6313 4.379302 AGCTTTTCTGTCTTCCTTCCAT 57.621 40.909 0.00 0.00 0.00 3.41
4594 6314 3.864789 AGCTTTTCTGTCTTCCTTCCA 57.135 42.857 0.00 0.00 0.00 3.53
4595 6315 4.004314 GGTAGCTTTTCTGTCTTCCTTCC 58.996 47.826 0.00 0.00 0.00 3.46
4596 6316 4.004314 GGGTAGCTTTTCTGTCTTCCTTC 58.996 47.826 0.00 0.00 0.00 3.46
4597 6317 3.244946 GGGGTAGCTTTTCTGTCTTCCTT 60.245 47.826 0.00 0.00 0.00 3.36
4598 6318 2.306219 GGGGTAGCTTTTCTGTCTTCCT 59.694 50.000 0.00 0.00 0.00 3.36
4599 6319 2.618302 GGGGGTAGCTTTTCTGTCTTCC 60.618 54.545 0.00 0.00 0.00 3.46
4600 6320 2.306219 AGGGGGTAGCTTTTCTGTCTTC 59.694 50.000 0.00 0.00 0.00 2.87
4601 6321 2.349445 AGGGGGTAGCTTTTCTGTCTT 58.651 47.619 0.00 0.00 0.00 3.01
4602 6322 2.046280 AGGGGGTAGCTTTTCTGTCT 57.954 50.000 0.00 0.00 0.00 3.41
4603 6323 2.306219 AGAAGGGGGTAGCTTTTCTGTC 59.694 50.000 0.00 0.00 0.00 3.51
4604 6324 2.349445 AGAAGGGGGTAGCTTTTCTGT 58.651 47.619 0.00 0.00 0.00 3.41
4605 6325 4.569719 TTAGAAGGGGGTAGCTTTTCTG 57.430 45.455 0.00 0.00 31.19 3.02
4606 6326 5.594199 TTTTAGAAGGGGGTAGCTTTTCT 57.406 39.130 0.00 9.71 33.15 2.52
4628 6348 5.348451 GCCGCACTCATGATTTTATGTTTTT 59.652 36.000 0.00 0.00 0.00 1.94
4629 6349 4.864247 GCCGCACTCATGATTTTATGTTTT 59.136 37.500 0.00 0.00 0.00 2.43
4630 6350 4.423732 GCCGCACTCATGATTTTATGTTT 58.576 39.130 0.00 0.00 0.00 2.83
4631 6351 3.487376 CGCCGCACTCATGATTTTATGTT 60.487 43.478 0.00 0.00 0.00 2.71
4632 6352 2.032054 CGCCGCACTCATGATTTTATGT 59.968 45.455 0.00 0.00 0.00 2.29
4633 6353 2.287644 TCGCCGCACTCATGATTTTATG 59.712 45.455 0.00 0.00 0.00 1.90
4634 6354 2.560504 TCGCCGCACTCATGATTTTAT 58.439 42.857 0.00 0.00 0.00 1.40
4635 6355 2.017138 TCGCCGCACTCATGATTTTA 57.983 45.000 0.00 0.00 0.00 1.52
4636 6356 1.164411 TTCGCCGCACTCATGATTTT 58.836 45.000 0.00 0.00 0.00 1.82
4637 6357 1.331756 GATTCGCCGCACTCATGATTT 59.668 47.619 0.00 0.00 0.00 2.17
4638 6358 0.940126 GATTCGCCGCACTCATGATT 59.060 50.000 0.00 0.00 0.00 2.57
4639 6359 0.105593 AGATTCGCCGCACTCATGAT 59.894 50.000 0.00 0.00 0.00 2.45
4640 6360 0.807275 CAGATTCGCCGCACTCATGA 60.807 55.000 0.00 0.00 0.00 3.07
4641 6361 1.640069 CAGATTCGCCGCACTCATG 59.360 57.895 0.00 0.00 0.00 3.07
4642 6362 2.176273 GCAGATTCGCCGCACTCAT 61.176 57.895 0.00 0.00 0.00 2.90
4643 6363 2.815211 GCAGATTCGCCGCACTCA 60.815 61.111 0.00 0.00 0.00 3.41
4644 6364 2.815211 TGCAGATTCGCCGCACTC 60.815 61.111 0.00 0.00 0.00 3.51
4652 6372 4.473520 AGCCCGGGTGCAGATTCG 62.474 66.667 24.63 0.00 0.00 3.34
4653 6373 2.514824 GAGCCCGGGTGCAGATTC 60.515 66.667 24.63 1.65 0.00 2.52
4654 6374 3.329889 TGAGCCCGGGTGCAGATT 61.330 61.111 24.63 0.00 0.00 2.40
4655 6375 3.790437 CTGAGCCCGGGTGCAGAT 61.790 66.667 29.78 9.09 0.00 2.90
4668 6388 4.694233 AGCGTGGGTGCAGCTGAG 62.694 66.667 20.43 8.15 40.07 3.35
4669 6389 4.687215 GAGCGTGGGTGCAGCTGA 62.687 66.667 20.43 0.00 41.84 4.26
4670 6390 4.994471 TGAGCGTGGGTGCAGCTG 62.994 66.667 16.65 10.11 41.84 4.24
4671 6391 4.996434 GTGAGCGTGGGTGCAGCT 62.996 66.667 16.65 6.47 44.80 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.