Multiple sequence alignment - TraesCS3D01G086400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G086400 chr3D 100.000 4756 0 0 1 4756 43788294 43793049 0.000000e+00 8783.0
1 TraesCS3D01G086400 chr3D 90.672 922 49 21 2928 3841 43729527 43728635 0.000000e+00 1192.0
2 TraesCS3D01G086400 chr3D 89.922 258 19 3 3854 4111 43730075 43729825 4.590000e-85 326.0
3 TraesCS3D01G086400 chr3D 96.875 32 1 0 4124 4155 43728266 43728235 2.000000e-03 54.7
4 TraesCS3D01G086400 chr3A 89.619 2601 164 54 222 2794 55506067 55503545 0.000000e+00 3210.0
5 TraesCS3D01G086400 chr3A 89.305 561 49 6 3284 3841 55503074 55502522 0.000000e+00 693.0
6 TraesCS3D01G086400 chr3A 86.380 279 29 5 3835 4111 55502495 55502224 3.600000e-76 296.0
7 TraesCS3D01G086400 chr3A 85.714 224 18 5 4133 4343 55713814 55714036 1.720000e-54 224.0
8 TraesCS3D01G086400 chr3A 79.725 291 47 9 4376 4655 55714115 55714404 2.900000e-47 200.0
9 TraesCS3D01G086400 chr3A 89.899 99 10 0 9 107 55506392 55506294 1.390000e-25 128.0
10 TraesCS3D01G086400 chr3A 100.000 28 0 0 4125 4152 55502156 55502129 9.000000e-03 52.8
11 TraesCS3D01G086400 chr3B 90.408 1595 93 20 786 2367 68356356 68354809 0.000000e+00 2043.0
12 TraesCS3D01G086400 chr3B 88.422 1641 101 35 571 2185 68441935 68443512 0.000000e+00 1895.0
13 TraesCS3D01G086400 chr3B 90.157 955 63 13 2132 3084 68443501 68444426 0.000000e+00 1214.0
14 TraesCS3D01G086400 chr3B 85.417 912 73 23 3229 4106 68444426 68445311 0.000000e+00 893.0
15 TraesCS3D01G086400 chr3B 88.948 561 51 6 3284 3841 68348748 68348196 0.000000e+00 682.0
16 TraesCS3D01G086400 chr3B 88.544 419 34 5 2379 2794 68349652 68349245 3.310000e-136 496.0
17 TraesCS3D01G086400 chr3B 87.814 279 24 6 3835 4111 68348172 68347902 7.680000e-83 318.0
18 TraesCS3D01G086400 chr7A 91.925 161 11 2 2256 2415 690942763 690942922 1.720000e-54 224.0
19 TraesCS3D01G086400 chr7A 84.615 78 12 0 311 388 461809992 461809915 1.420000e-10 78.7
20 TraesCS3D01G086400 chr7D 83.721 215 24 8 310 523 14935144 14934940 4.860000e-45 193.0
21 TraesCS3D01G086400 chr7D 77.636 313 43 16 249 553 461131956 461132249 1.060000e-36 165.0
22 TraesCS3D01G086400 chr7D 86.747 83 11 0 306 388 403097735 403097653 5.070000e-15 93.5
23 TraesCS3D01G086400 chr1D 77.647 255 41 14 249 495 211424601 211424847 1.780000e-29 141.0
24 TraesCS3D01G086400 chr1B 76.265 257 43 11 249 495 305415301 305415053 2.320000e-23 121.0
25 TraesCS3D01G086400 chr7B 93.939 66 4 0 2256 2321 677698859 677698924 3.030000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G086400 chr3D 43788294 43793049 4755 False 8783.000000 8783 100.000000 1 4756 1 chr3D.!!$F1 4755
1 TraesCS3D01G086400 chr3D 43728235 43730075 1840 True 524.233333 1192 92.489667 2928 4155 3 chr3D.!!$R1 1227
2 TraesCS3D01G086400 chr3A 55502129 55506392 4263 True 875.960000 3210 91.040600 9 4152 5 chr3A.!!$R1 4143
3 TraesCS3D01G086400 chr3A 55713814 55714404 590 False 212.000000 224 82.719500 4133 4655 2 chr3A.!!$F1 522
4 TraesCS3D01G086400 chr3B 68354809 68356356 1547 True 2043.000000 2043 90.408000 786 2367 1 chr3B.!!$R1 1581
5 TraesCS3D01G086400 chr3B 68441935 68445311 3376 False 1334.000000 1895 87.998667 571 4106 3 chr3B.!!$F1 3535
6 TraesCS3D01G086400 chr3B 68347902 68349652 1750 True 498.666667 682 88.435333 2379 4111 3 chr3B.!!$R2 1732

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
114 115 0.026933 TTAAAGTGTGTGCGCGTGTG 59.973 50.0 8.43 0.00 0.00 3.82 F
548 704 0.105039 CTTGGAGGTACGATGGAGCC 59.895 60.0 0.00 0.00 0.00 4.70 F
989 1162 0.113190 TCCACTCTGAGGTCTGAGCA 59.887 55.0 9.85 0.00 43.18 4.26 F
1507 1683 0.527817 CTTCATCGGCGACTGGTACC 60.528 60.0 13.76 4.43 0.00 3.34 F
2547 2802 0.888619 TCCAAAACAACGCCACAACA 59.111 45.0 0.00 0.00 0.00 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1071 1247 0.179134 CCCAGTCGAAGTAGGCGAAG 60.179 60.0 0.00 0.00 39.73 3.79 R
1633 1809 0.249489 ACATTGATCCGCTCGTAGGC 60.249 55.0 0.00 0.00 0.00 3.93 R
1842 2018 0.459899 CATAGTAGTCGGTGCTGGCA 59.540 55.0 0.00 0.00 0.00 4.92 R
3247 3539 0.621571 ATAGCAGTTCCCTGGCTGGA 60.622 55.0 12.58 1.72 39.22 3.86 R
4201 4623 0.032540 GCCAGCCAAGAACCAAACTG 59.967 55.0 0.00 0.00 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 7.792374 TTATGCAAAACCAAAGCAAATACAA 57.208 28.000 0.00 0.00 42.15 2.41
57 58 3.585862 TGTAGCGGAGTTCATGAGTTTC 58.414 45.455 0.00 0.00 0.00 2.78
59 60 2.693069 AGCGGAGTTCATGAGTTTCAG 58.307 47.619 0.00 0.00 0.00 3.02
65 66 6.512741 GCGGAGTTCATGAGTTTCAGTTTTAA 60.513 38.462 0.00 0.00 0.00 1.52
110 111 2.376915 TTCTTTAAAGTGTGTGCGCG 57.623 45.000 14.74 0.00 0.00 6.86
112 113 1.004398 TCTTTAAAGTGTGTGCGCGTG 60.004 47.619 14.74 0.00 0.00 5.34
113 114 0.727970 TTTAAAGTGTGTGCGCGTGT 59.272 45.000 8.43 0.00 0.00 4.49
114 115 0.026933 TTAAAGTGTGTGCGCGTGTG 59.973 50.000 8.43 0.00 0.00 3.82
115 116 1.084935 TAAAGTGTGTGCGCGTGTGT 61.085 50.000 8.43 0.00 0.00 3.72
118 119 1.154672 GTGTGTGCGCGTGTGTATG 60.155 57.895 8.43 0.00 0.00 2.39
119 120 2.202171 GTGTGCGCGTGTGTATGC 60.202 61.111 8.43 0.00 35.44 3.14
125 126 2.474266 GCGTGTGTATGCGTGTGG 59.526 61.111 0.00 0.00 0.00 4.17
128 129 1.866237 GTGTGTATGCGTGTGGGTG 59.134 57.895 0.00 0.00 0.00 4.61
129 130 1.963855 TGTGTATGCGTGTGGGTGC 60.964 57.895 0.00 0.00 0.00 5.01
130 131 2.740440 TGTATGCGTGTGGGTGCG 60.740 61.111 0.00 0.00 0.00 5.34
158 159 2.022764 TGCGTGAGAGAGAGAGAGAG 57.977 55.000 0.00 0.00 0.00 3.20
159 160 1.552792 TGCGTGAGAGAGAGAGAGAGA 59.447 52.381 0.00 0.00 0.00 3.10
160 161 2.205074 GCGTGAGAGAGAGAGAGAGAG 58.795 57.143 0.00 0.00 0.00 3.20
161 162 2.159099 GCGTGAGAGAGAGAGAGAGAGA 60.159 54.545 0.00 0.00 0.00 3.10
162 163 3.711086 CGTGAGAGAGAGAGAGAGAGAG 58.289 54.545 0.00 0.00 0.00 3.20
163 164 3.381590 CGTGAGAGAGAGAGAGAGAGAGA 59.618 52.174 0.00 0.00 0.00 3.10
165 166 4.646945 GTGAGAGAGAGAGAGAGAGAGAGA 59.353 50.000 0.00 0.00 0.00 3.10
166 167 5.304101 GTGAGAGAGAGAGAGAGAGAGAGAT 59.696 48.000 0.00 0.00 0.00 2.75
167 168 5.303845 TGAGAGAGAGAGAGAGAGAGAGATG 59.696 48.000 0.00 0.00 0.00 2.90
220 221 7.880195 AGTGTGCTTAGTCATAAGAAGACAAAT 59.120 33.333 6.18 0.00 41.37 2.32
280 434 3.384146 ACTTTGTGGCATTGATTGTGACA 59.616 39.130 0.00 0.00 30.62 3.58
282 436 4.397481 TTGTGGCATTGATTGTGACAAA 57.603 36.364 0.62 0.00 36.13 2.83
283 437 3.715495 TGTGGCATTGATTGTGACAAAC 58.285 40.909 0.62 0.00 36.13 2.93
287 441 4.809958 TGGCATTGATTGTGACAAACTTTG 59.190 37.500 0.62 3.33 30.04 2.77
290 444 5.291614 GCATTGATTGTGACAAACTTTGTGT 59.708 36.000 11.97 0.00 45.52 3.72
291 445 6.475076 GCATTGATTGTGACAAACTTTGTGTA 59.525 34.615 11.97 0.00 45.52 2.90
292 446 7.009999 GCATTGATTGTGACAAACTTTGTGTAA 59.990 33.333 11.97 4.93 45.52 2.41
294 448 8.994429 TTGATTGTGACAAACTTTGTGTAATT 57.006 26.923 11.97 0.00 45.52 1.40
306 460 9.930693 AAACTTTGTGTAATTAAAAAGTCACCA 57.069 25.926 16.51 0.00 40.91 4.17
307 461 9.930693 AACTTTGTGTAATTAAAAAGTCACCAA 57.069 25.926 16.51 5.75 40.91 3.67
341 495 6.595716 GGACAAATAATATTCTAGGCGCTCAT 59.404 38.462 7.64 0.00 0.00 2.90
344 498 8.094548 ACAAATAATATTCTAGGCGCTCATACA 58.905 33.333 7.64 0.00 0.00 2.29
357 511 7.767261 AGGCGCTCATACATAAAATAACAAAA 58.233 30.769 7.64 0.00 0.00 2.44
400 554 5.643339 CACTGTTGAGTGTTGAGTAGAAC 57.357 43.478 0.00 0.00 44.15 3.01
401 555 5.352284 CACTGTTGAGTGTTGAGTAGAACT 58.648 41.667 0.00 0.00 44.15 3.01
486 640 6.020440 GTCATTTTGTCATAATCAATGCCACG 60.020 38.462 0.00 0.00 35.38 4.94
548 704 0.105039 CTTGGAGGTACGATGGAGCC 59.895 60.000 0.00 0.00 0.00 4.70
553 709 2.027751 GTACGATGGAGCCGAGCC 59.972 66.667 0.00 0.00 0.00 4.70
555 711 2.782222 TACGATGGAGCCGAGCCAC 61.782 63.158 0.00 0.00 38.44 5.01
560 716 0.179045 ATGGAGCCGAGCCACATTAC 60.179 55.000 0.00 0.00 38.44 1.89
626 783 4.983671 ATTTATTTTCTTCCGCCAGACC 57.016 40.909 0.00 0.00 0.00 3.85
627 784 3.426787 TTATTTTCTTCCGCCAGACCA 57.573 42.857 0.00 0.00 0.00 4.02
630 787 0.400213 TTTCTTCCGCCAGACCACAT 59.600 50.000 0.00 0.00 0.00 3.21
645 802 7.605449 CCAGACCACATATGAATGAACTTTTT 58.395 34.615 10.38 0.00 36.54 1.94
648 805 8.859090 AGACCACATATGAATGAACTTTTTCAA 58.141 29.630 10.38 0.00 45.01 2.69
903 1065 2.507339 TTGCGCCCAAAAGAAAAGAG 57.493 45.000 4.18 0.00 0.00 2.85
934 1103 0.965866 CTTTTCCGGCCCCTTCCTTC 60.966 60.000 0.00 0.00 0.00 3.46
956 1125 1.472376 CCCATCTTCCTCTGTTCGCTC 60.472 57.143 0.00 0.00 0.00 5.03
989 1162 0.113190 TCCACTCTGAGGTCTGAGCA 59.887 55.000 9.85 0.00 43.18 4.26
990 1163 0.531657 CCACTCTGAGGTCTGAGCAG 59.468 60.000 9.85 3.00 43.18 4.24
991 1164 0.531657 CACTCTGAGGTCTGAGCAGG 59.468 60.000 9.85 0.00 43.18 4.85
992 1165 0.614415 ACTCTGAGGTCTGAGCAGGG 60.614 60.000 9.85 5.18 43.18 4.45
1045 1221 1.732917 CTCCTGCTCCTACTCTGCG 59.267 63.158 0.00 0.00 0.00 5.18
1272 1448 1.597854 CCAGCACCGCAAGAACTCA 60.598 57.895 0.00 0.00 43.02 3.41
1288 1464 4.758251 CATGGCAGGACGGCGTCA 62.758 66.667 37.13 20.50 45.16 4.35
1384 1560 2.591193 CTTCTACTCCCCCTCCGCCT 62.591 65.000 0.00 0.00 0.00 5.52
1385 1561 2.041819 CTACTCCCCCTCCGCCTT 60.042 66.667 0.00 0.00 0.00 4.35
1444 1620 3.025743 TCAACAACCGCGACGTCG 61.026 61.111 32.57 32.57 43.27 5.12
1507 1683 0.527817 CTTCATCGGCGACTGGTACC 60.528 60.000 13.76 4.43 0.00 3.34
1590 1766 2.456119 CGTGCTCATCAACGGGCTC 61.456 63.158 0.00 0.00 0.00 4.70
1794 1970 3.012518 GCAGAACTACAGCAACATGGAT 58.987 45.455 0.00 0.00 0.00 3.41
1797 1973 5.297776 GCAGAACTACAGCAACATGGATATT 59.702 40.000 0.00 0.00 0.00 1.28
1812 1988 5.434182 TGGATATTCATGTTGGACAGTCA 57.566 39.130 2.17 0.00 0.00 3.41
1842 2018 2.174210 CCTGGTCACCATGGATCAGAAT 59.826 50.000 21.47 0.00 46.71 2.40
1860 2036 1.414158 ATGCCAGCACCGACTACTAT 58.586 50.000 0.00 0.00 0.00 2.12
1872 2048 1.669779 GACTACTATGTCGTCGCCAGT 59.330 52.381 0.00 0.00 0.00 4.00
1885 2064 2.264480 CCAGTGCCCGATTCGTCA 59.736 61.111 5.20 0.00 0.00 4.35
2022 2210 2.806945 TCTCCATAAACCAAGCCAGG 57.193 50.000 0.00 0.00 0.00 4.45
2038 2226 2.158943 GCCAGGTCCATCAGGTACTTAC 60.159 54.545 0.00 0.00 34.60 2.34
2065 2256 1.200020 CTTCCTCCACGCCACATTTTC 59.800 52.381 0.00 0.00 0.00 2.29
2077 2269 5.049267 ACGCCACATTTTCGTTTGTACTATT 60.049 36.000 0.00 0.00 31.89 1.73
2078 2270 5.506832 CGCCACATTTTCGTTTGTACTATTC 59.493 40.000 0.00 0.00 0.00 1.75
2079 2271 6.375377 GCCACATTTTCGTTTGTACTATTCA 58.625 36.000 0.00 0.00 0.00 2.57
2166 2386 6.757237 TGATGATGCTACATTTTGGTTTGTT 58.243 32.000 0.00 0.00 0.00 2.83
2191 2411 9.743057 TTTTTGTTTGGAATGTTACTACTGATG 57.257 29.630 0.00 0.00 0.00 3.07
2307 2562 3.131577 ACATTACCGTGACCGATGTGTAT 59.868 43.478 0.00 0.00 35.63 2.29
2308 2563 3.425577 TTACCGTGACCGATGTGTATC 57.574 47.619 0.00 0.00 35.63 2.24
2321 2576 4.498241 GATGTGTATCTGTTGCAGAGTCA 58.502 43.478 5.09 4.09 44.08 3.41
2410 2665 4.400251 CCACTCCATTGATACTTGCACAAT 59.600 41.667 0.00 0.00 35.10 2.71
2424 2679 4.734398 TGCACAATTATTCAATGTCCCC 57.266 40.909 0.00 0.00 0.00 4.81
2499 2754 3.700539 TCGACACCTCGGTTATAAATGGA 59.299 43.478 0.00 0.00 40.58 3.41
2547 2802 0.888619 TCCAAAACAACGCCACAACA 59.111 45.000 0.00 0.00 0.00 3.33
2598 2854 5.473846 TGCATTCTTTGTCGTTGGGTAATTA 59.526 36.000 0.00 0.00 0.00 1.40
2604 2860 5.554822 TTGTCGTTGGGTAATTATCTTGC 57.445 39.130 0.00 0.00 0.00 4.01
2605 2861 4.580868 TGTCGTTGGGTAATTATCTTGCA 58.419 39.130 0.00 0.00 0.00 4.08
2606 2862 5.004448 TGTCGTTGGGTAATTATCTTGCAA 58.996 37.500 0.00 0.00 0.00 4.08
2607 2863 5.106475 TGTCGTTGGGTAATTATCTTGCAAC 60.106 40.000 0.00 6.37 0.00 4.17
2608 2864 5.004448 TCGTTGGGTAATTATCTTGCAACA 58.996 37.500 13.40 0.00 0.00 3.33
2609 2865 5.092781 CGTTGGGTAATTATCTTGCAACAC 58.907 41.667 13.40 0.00 0.00 3.32
2610 2866 5.407502 GTTGGGTAATTATCTTGCAACACC 58.592 41.667 0.00 0.00 0.00 4.16
2611 2867 4.929479 TGGGTAATTATCTTGCAACACCT 58.071 39.130 0.00 0.00 0.00 4.00
2612 2868 5.329399 TGGGTAATTATCTTGCAACACCTT 58.671 37.500 0.00 0.00 0.00 3.50
2613 2869 5.777732 TGGGTAATTATCTTGCAACACCTTT 59.222 36.000 0.00 0.00 0.00 3.11
2645 2902 5.879223 TCTTCTTCATCCAGATCTTCTTTGC 59.121 40.000 0.00 0.00 0.00 3.68
2649 2906 7.397221 TCTTCATCCAGATCTTCTTTGCTTAA 58.603 34.615 0.00 0.00 0.00 1.85
2661 2918 6.775629 TCTTCTTTGCTTAACTATGGTTGGTT 59.224 34.615 4.47 0.00 36.92 3.67
2662 2919 7.940137 TCTTCTTTGCTTAACTATGGTTGGTTA 59.060 33.333 4.47 0.00 36.92 2.85
2668 2925 7.398829 TGCTTAACTATGGTTGGTTATTCTCA 58.601 34.615 4.47 0.00 36.92 3.27
2770 3031 1.820519 TCCAGGTGCTGAAATTCATGC 59.179 47.619 0.00 3.49 32.44 4.06
2882 3143 9.520515 ACCATATCTGTTTTAGAATGACAGTTT 57.479 29.630 0.00 0.00 41.12 2.66
3161 3432 4.586421 TGTGGATGGCTAAACACATTCAAA 59.414 37.500 6.17 0.00 38.76 2.69
3239 3531 7.967854 TGAACTGAAAACATTAACAGACAGTTG 59.032 33.333 0.00 0.00 43.86 3.16
3247 3539 4.916983 TTAACAGACAGTTGCATTGCTT 57.083 36.364 10.49 0.00 41.50 3.91
3324 3631 4.236935 CGTTGATTGATTTGGGAGGTTTG 58.763 43.478 0.00 0.00 0.00 2.93
3329 3636 3.541242 TGATTTGGGAGGTTTGTGGAT 57.459 42.857 0.00 0.00 0.00 3.41
3348 3655 2.620251 TGAGAATGCAGGTATTCCCG 57.380 50.000 6.50 0.00 37.70 5.14
3378 3685 1.027357 CTGCTGTGCTTGTGTTCCTT 58.973 50.000 0.00 0.00 0.00 3.36
3611 3922 1.542987 GGAATGGATGCAGAGGAGAGC 60.543 57.143 0.00 0.00 0.00 4.09
3625 3937 4.767928 AGAGGAGAGCAATATAACGGTAGG 59.232 45.833 0.00 0.00 0.00 3.18
3626 3938 4.737578 AGGAGAGCAATATAACGGTAGGA 58.262 43.478 0.00 0.00 0.00 2.94
3631 3945 6.223852 AGAGCAATATAACGGTAGGATGTTG 58.776 40.000 0.00 0.00 0.00 3.33
3671 3985 6.198639 ACAATCTCATAGGTTCCAGTACTCT 58.801 40.000 0.00 0.00 0.00 3.24
3682 3996 0.528017 CAGTACTCTGGAGCTTCGCA 59.472 55.000 0.00 0.00 37.97 5.10
3702 4016 1.448497 GTTGGGAAGACGGTGTCCA 59.552 57.895 9.12 0.00 35.44 4.02
3704 4018 1.338890 TTGGGAAGACGGTGTCCACA 61.339 55.000 9.12 3.34 35.44 4.17
3768 4086 7.148390 TGCTATATAGATAGACGAAGACACTGC 60.148 40.741 14.16 0.00 37.81 4.40
3789 4107 3.244181 GCATGGACCTGTTTTGTGGAAAT 60.244 43.478 0.00 0.00 0.00 2.17
3791 4109 3.636679 TGGACCTGTTTTGTGGAAATGA 58.363 40.909 0.00 0.00 0.00 2.57
3792 4110 3.636300 TGGACCTGTTTTGTGGAAATGAG 59.364 43.478 0.00 0.00 0.00 2.90
3794 4112 3.888930 GACCTGTTTTGTGGAAATGAGGA 59.111 43.478 0.00 0.00 35.12 3.71
3796 4114 4.714308 ACCTGTTTTGTGGAAATGAGGAAA 59.286 37.500 0.00 0.00 35.12 3.13
3797 4115 5.163416 ACCTGTTTTGTGGAAATGAGGAAAG 60.163 40.000 0.00 0.00 35.12 2.62
3805 4124 3.521126 TGGAAATGAGGAAAGGAGGAGAG 59.479 47.826 0.00 0.00 0.00 3.20
3806 4125 3.777522 GGAAATGAGGAAAGGAGGAGAGA 59.222 47.826 0.00 0.00 0.00 3.10
3841 4160 1.134759 CAGTGCAGAGACAGGAGGATG 60.135 57.143 0.00 0.00 0.00 3.51
3842 4161 0.901124 GTGCAGAGACAGGAGGATGT 59.099 55.000 0.00 0.00 35.68 3.06
3843 4162 1.277557 GTGCAGAGACAGGAGGATGTT 59.722 52.381 0.00 0.00 32.25 2.71
3844 4163 1.980765 TGCAGAGACAGGAGGATGTTT 59.019 47.619 0.00 0.00 32.25 2.83
3846 4165 3.181440 TGCAGAGACAGGAGGATGTTTTT 60.181 43.478 0.00 0.00 32.25 1.94
3916 4272 8.601546 AGATGGAGTAGGAGGAAATTAATCATC 58.398 37.037 0.00 0.00 0.00 2.92
3931 4287 8.543293 AATTAATCATCCCATTCAAGATGTGT 57.457 30.769 0.00 0.00 40.63 3.72
3935 4291 5.430886 TCATCCCATTCAAGATGTGTAGTG 58.569 41.667 0.00 0.00 40.63 2.74
3936 4292 3.609853 TCCCATTCAAGATGTGTAGTGC 58.390 45.455 0.00 0.00 0.00 4.40
3937 4293 3.264193 TCCCATTCAAGATGTGTAGTGCT 59.736 43.478 0.00 0.00 0.00 4.40
3938 4294 4.469586 TCCCATTCAAGATGTGTAGTGCTA 59.530 41.667 0.00 0.00 0.00 3.49
3939 4295 4.572389 CCCATTCAAGATGTGTAGTGCTAC 59.428 45.833 2.60 2.60 36.63 3.58
3940 4296 5.423015 CCATTCAAGATGTGTAGTGCTACT 58.577 41.667 10.28 0.00 37.00 2.57
3941 4297 6.406961 CCCATTCAAGATGTGTAGTGCTACTA 60.407 42.308 10.28 1.31 37.00 1.82
3942 4298 6.699204 CCATTCAAGATGTGTAGTGCTACTAG 59.301 42.308 10.28 0.00 37.00 2.57
3980 4336 7.860373 GTGTATGTGTTTACTGCTTCAAATTCA 59.140 33.333 0.00 0.00 0.00 2.57
4067 4433 3.146104 CCAACTTGGTCTCCTGAATGT 57.854 47.619 0.00 0.00 31.35 2.71
4085 4451 2.537143 TGTAGAGGGGAGGAAGTTGTC 58.463 52.381 0.00 0.00 0.00 3.18
4111 4477 6.105333 TGTGTTTGAAATTGGACTGAAAAGG 58.895 36.000 0.00 0.00 0.00 3.11
4112 4478 6.071108 TGTGTTTGAAATTGGACTGAAAAGGA 60.071 34.615 0.00 0.00 0.00 3.36
4114 4480 6.154363 TGTTTGAAATTGGACTGAAAAGGAGT 59.846 34.615 0.00 0.00 0.00 3.85
4115 4481 7.340743 TGTTTGAAATTGGACTGAAAAGGAGTA 59.659 33.333 0.00 0.00 0.00 2.59
4117 4483 7.687941 TGAAATTGGACTGAAAAGGAGTATC 57.312 36.000 0.00 0.00 0.00 2.24
4120 4486 7.693969 AATTGGACTGAAAAGGAGTATCTTG 57.306 36.000 0.00 0.00 33.73 3.02
4122 4488 4.041567 TGGACTGAAAAGGAGTATCTTGCA 59.958 41.667 0.00 0.00 33.73 4.08
4164 4584 1.045407 AGGCACTAACGACAACTGGA 58.955 50.000 0.00 0.00 36.02 3.86
4167 4587 2.547218 GGCACTAACGACAACTGGAAGA 60.547 50.000 0.00 0.00 37.43 2.87
4183 4603 2.287103 GGAAGACTGGTTGTTGTCGTTC 59.713 50.000 0.00 0.00 38.16 3.95
4187 4607 3.118738 AGACTGGTTGTTGTCGTTCTTCT 60.119 43.478 0.00 0.00 38.16 2.85
4191 4611 2.544267 GGTTGTTGTCGTTCTTCTCCTG 59.456 50.000 0.00 0.00 0.00 3.86
4192 4612 3.454375 GTTGTTGTCGTTCTTCTCCTGA 58.546 45.455 0.00 0.00 0.00 3.86
4201 4623 3.923461 CGTTCTTCTCCTGATGTCTGTTC 59.077 47.826 0.00 0.00 0.00 3.18
4216 4638 2.687935 TCTGTTCAGTTTGGTTCTTGGC 59.312 45.455 0.00 0.00 0.00 4.52
4220 4642 0.032540 CAGTTTGGTTCTTGGCTGGC 59.967 55.000 0.00 0.00 0.00 4.85
4229 4651 1.451028 CTTGGCTGGCAGGTAGCTC 60.451 63.158 17.64 0.00 44.79 4.09
4230 4652 1.908340 CTTGGCTGGCAGGTAGCTCT 61.908 60.000 17.64 0.00 44.79 4.09
4232 4654 1.451028 GGCTGGCAGGTAGCTCTTG 60.451 63.158 17.64 0.00 44.79 3.02
4246 4668 3.669536 AGCTCTTGGTTTCTTAGCAGAC 58.330 45.455 0.00 0.00 35.32 3.51
4265 4687 2.133742 CTTGCCCACGTTCAAGCAGG 62.134 60.000 8.46 2.34 36.44 4.85
4346 4778 2.572290 GGTATCAACACCCATACAGCC 58.428 52.381 0.00 0.00 31.91 4.85
4350 4782 3.275617 TCAACACCCATACAGCCATAC 57.724 47.619 0.00 0.00 0.00 2.39
4351 4783 2.843730 TCAACACCCATACAGCCATACT 59.156 45.455 0.00 0.00 0.00 2.12
4352 4784 3.265737 TCAACACCCATACAGCCATACTT 59.734 43.478 0.00 0.00 0.00 2.24
4353 4785 4.016444 CAACACCCATACAGCCATACTTT 58.984 43.478 0.00 0.00 0.00 2.66
4354 4786 4.316025 ACACCCATACAGCCATACTTTT 57.684 40.909 0.00 0.00 0.00 2.27
4357 4789 6.431722 ACACCCATACAGCCATACTTTTTAT 58.568 36.000 0.00 0.00 0.00 1.40
4358 4790 7.579105 ACACCCATACAGCCATACTTTTTATA 58.421 34.615 0.00 0.00 0.00 0.98
4359 4791 8.056400 ACACCCATACAGCCATACTTTTTATAA 58.944 33.333 0.00 0.00 0.00 0.98
4360 4792 8.349983 CACCCATACAGCCATACTTTTTATAAC 58.650 37.037 0.00 0.00 0.00 1.89
4361 4793 8.056400 ACCCATACAGCCATACTTTTTATAACA 58.944 33.333 0.00 0.00 0.00 2.41
4362 4794 8.908903 CCCATACAGCCATACTTTTTATAACAA 58.091 33.333 0.00 0.00 0.00 2.83
4384 4862 3.063510 TGAAGAGTTGGCCTGAATCAG 57.936 47.619 3.32 2.68 0.00 2.90
4395 4873 2.680339 GCCTGAATCAGTTAGACCTTGC 59.320 50.000 9.63 0.00 0.00 4.01
4397 4875 4.326826 CCTGAATCAGTTAGACCTTGCAA 58.673 43.478 9.63 0.00 0.00 4.08
4402 4880 8.402798 TGAATCAGTTAGACCTTGCAAATTAA 57.597 30.769 0.00 0.00 0.00 1.40
4407 4886 9.162764 TCAGTTAGACCTTGCAAATTAAGTATC 57.837 33.333 0.00 0.00 0.00 2.24
4419 4898 9.002600 TGCAAATTAAGTATCTCATAATCGCAT 57.997 29.630 0.00 0.00 30.54 4.73
4443 4922 9.561069 CATACATTTACAAGGAAGCTAATAGGT 57.439 33.333 0.00 0.00 0.00 3.08
4444 4923 7.865706 ACATTTACAAGGAAGCTAATAGGTG 57.134 36.000 0.00 0.00 0.00 4.00
4457 4937 9.785982 GAAGCTAATAGGTGGAGAGAAAATAAT 57.214 33.333 0.00 0.00 0.00 1.28
4478 4958 5.888412 ATTTGTCTTGTTTGATTTGACGC 57.112 34.783 0.00 0.00 0.00 5.19
4483 4963 2.031037 TGTTTGATTTGACGCGCTTC 57.969 45.000 5.73 6.99 0.00 3.86
4489 4969 0.798776 ATTTGACGCGCTTCCTGAAG 59.201 50.000 11.76 2.48 41.24 3.02
4492 4972 0.531974 TGACGCGCTTCCTGAAGTTT 60.532 50.000 11.76 0.00 40.45 2.66
4494 4974 1.390463 GACGCGCTTCCTGAAGTTTAG 59.610 52.381 5.73 1.76 40.45 1.85
4496 4976 1.390463 CGCGCTTCCTGAAGTTTAGTC 59.610 52.381 5.56 0.00 40.45 2.59
4500 4980 2.870435 GCTTCCTGAAGTTTAGTCGCCA 60.870 50.000 8.57 0.00 40.45 5.69
4502 4982 1.275291 TCCTGAAGTTTAGTCGCCAGG 59.725 52.381 0.00 0.00 41.74 4.45
4521 5001 6.473455 CGCCAGGAAATATTTGAAAATCTCAC 59.527 38.462 5.17 0.00 32.21 3.51
4532 5019 8.627208 ATTTGAAAATCTCACTCACTACACAT 57.373 30.769 0.00 0.00 32.21 3.21
4533 5020 7.425577 TTGAAAATCTCACTCACTACACATG 57.574 36.000 0.00 0.00 32.21 3.21
4534 5021 6.758254 TGAAAATCTCACTCACTACACATGA 58.242 36.000 0.00 0.00 0.00 3.07
4535 5022 6.646653 TGAAAATCTCACTCACTACACATGAC 59.353 38.462 0.00 0.00 0.00 3.06
4539 5026 6.502136 TCTCACTCACTACACATGACTAAG 57.498 41.667 0.00 0.00 0.00 2.18
4541 5028 4.082190 TCACTCACTACACATGACTAAGCC 60.082 45.833 0.00 0.00 0.00 4.35
4549 5036 6.874134 ACTACACATGACTAAGCCTAAAGTTG 59.126 38.462 0.00 0.00 0.00 3.16
4550 5037 5.865085 ACACATGACTAAGCCTAAAGTTGA 58.135 37.500 0.00 0.00 0.00 3.18
4551 5038 5.934625 ACACATGACTAAGCCTAAAGTTGAG 59.065 40.000 0.00 0.00 0.00 3.02
4552 5039 5.934625 CACATGACTAAGCCTAAAGTTGAGT 59.065 40.000 0.00 0.00 0.00 3.41
4553 5040 6.428159 CACATGACTAAGCCTAAAGTTGAGTT 59.572 38.462 0.00 0.00 0.00 3.01
4554 5041 6.428159 ACATGACTAAGCCTAAAGTTGAGTTG 59.572 38.462 0.00 0.00 0.00 3.16
4557 5044 1.911057 AGCCTAAAGTTGAGTTGCCC 58.089 50.000 0.00 0.00 0.00 5.36
4562 5049 4.442893 GCCTAAAGTTGAGTTGCCCTTTTT 60.443 41.667 0.00 0.00 0.00 1.94
4582 5069 5.538067 TTTTAGTTGTGCCTTTTTGTTGC 57.462 34.783 0.00 0.00 0.00 4.17
4630 5122 7.716612 TCATGGATTATATATGAAGCGACGAT 58.283 34.615 0.00 0.00 0.00 3.73
4633 5126 6.127451 TGGATTATATATGAAGCGACGATGGT 60.127 38.462 0.00 0.00 0.00 3.55
4647 5140 1.680338 GATGGTTCATGTAGCACCCC 58.320 55.000 6.35 0.00 31.87 4.95
4655 5148 2.028125 ATGTAGCACCCCGATGACCG 62.028 60.000 0.00 0.00 38.18 4.79
4656 5149 2.043752 TAGCACCCCGATGACCGA 60.044 61.111 0.00 0.00 41.76 4.69
4657 5150 2.420568 TAGCACCCCGATGACCGAC 61.421 63.158 0.00 0.00 41.76 4.79
4658 5151 4.077184 GCACCCCGATGACCGACA 62.077 66.667 0.00 0.00 41.76 4.35
4659 5152 2.125673 CACCCCGATGACCGACAC 60.126 66.667 0.00 0.00 41.76 3.67
4660 5153 2.283676 ACCCCGATGACCGACACT 60.284 61.111 0.00 0.00 41.76 3.55
4661 5154 1.000521 ACCCCGATGACCGACACTA 60.001 57.895 0.00 0.00 41.76 2.74
4662 5155 0.396695 ACCCCGATGACCGACACTAT 60.397 55.000 0.00 0.00 41.76 2.12
4663 5156 0.032130 CCCCGATGACCGACACTATG 59.968 60.000 0.00 0.00 41.76 2.23
4664 5157 0.597637 CCCGATGACCGACACTATGC 60.598 60.000 0.00 0.00 41.76 3.14
4665 5158 0.102300 CCGATGACCGACACTATGCA 59.898 55.000 0.00 0.00 41.76 3.96
4666 5159 1.470805 CCGATGACCGACACTATGCAA 60.471 52.381 0.00 0.00 41.76 4.08
4667 5160 1.854743 CGATGACCGACACTATGCAAG 59.145 52.381 0.00 0.00 41.76 4.01
4668 5161 2.479560 CGATGACCGACACTATGCAAGA 60.480 50.000 0.00 0.00 41.76 3.02
4669 5162 2.654749 TGACCGACACTATGCAAGAG 57.345 50.000 0.00 0.00 0.00 2.85
4670 5163 1.204704 TGACCGACACTATGCAAGAGG 59.795 52.381 0.00 0.00 0.00 3.69
4671 5164 0.537188 ACCGACACTATGCAAGAGGG 59.463 55.000 0.00 0.00 0.00 4.30
4672 5165 0.824109 CCGACACTATGCAAGAGGGA 59.176 55.000 8.17 0.00 0.00 4.20
4673 5166 1.202463 CCGACACTATGCAAGAGGGAG 60.202 57.143 8.17 2.33 0.00 4.30
4674 5167 1.751351 CGACACTATGCAAGAGGGAGA 59.249 52.381 8.17 0.00 0.00 3.71
4675 5168 2.223688 CGACACTATGCAAGAGGGAGAG 60.224 54.545 8.17 0.00 31.73 3.20
4676 5169 2.102252 GACACTATGCAAGAGGGAGAGG 59.898 54.545 8.17 0.00 29.32 3.69
4677 5170 1.415659 CACTATGCAAGAGGGAGAGGG 59.584 57.143 0.00 0.00 29.32 4.30
4678 5171 0.396060 CTATGCAAGAGGGAGAGGGC 59.604 60.000 0.00 0.00 0.00 5.19
4679 5172 1.056700 TATGCAAGAGGGAGAGGGCC 61.057 60.000 0.00 0.00 0.00 5.80
4680 5173 2.690510 GCAAGAGGGAGAGGGCCT 60.691 66.667 5.25 5.25 0.00 5.19
4681 5174 2.304831 GCAAGAGGGAGAGGGCCTT 61.305 63.158 7.89 0.00 0.00 4.35
4682 5175 1.606531 CAAGAGGGAGAGGGCCTTG 59.393 63.158 7.89 0.00 0.00 3.61
4683 5176 2.304831 AAGAGGGAGAGGGCCTTGC 61.305 63.158 7.89 2.20 0.00 4.01
4694 5187 4.294523 GCCTTGCCATGTCACGTA 57.705 55.556 0.00 0.00 0.00 3.57
4695 5188 2.780595 GCCTTGCCATGTCACGTAT 58.219 52.632 0.00 0.00 0.00 3.06
4696 5189 1.948104 GCCTTGCCATGTCACGTATA 58.052 50.000 0.00 0.00 0.00 1.47
4697 5190 1.867233 GCCTTGCCATGTCACGTATAG 59.133 52.381 0.00 0.00 0.00 1.31
4698 5191 2.483876 CCTTGCCATGTCACGTATAGG 58.516 52.381 0.00 0.00 0.00 2.57
4699 5192 1.867233 CTTGCCATGTCACGTATAGGC 59.133 52.381 9.03 9.03 42.32 3.93
4700 5193 0.249280 TGCCATGTCACGTATAGGCG 60.249 55.000 10.66 0.00 44.83 5.52
4701 5194 0.944311 GCCATGTCACGTATAGGCGG 60.944 60.000 0.00 0.00 35.98 6.13
4702 5195 0.387929 CCATGTCACGTATAGGCGGT 59.612 55.000 0.00 0.00 35.98 5.68
4703 5196 1.610038 CCATGTCACGTATAGGCGGTA 59.390 52.381 0.00 0.00 35.98 4.02
4704 5197 2.351447 CCATGTCACGTATAGGCGGTAG 60.351 54.545 0.00 0.00 35.98 3.18
4705 5198 1.311859 TGTCACGTATAGGCGGTAGG 58.688 55.000 0.00 0.00 35.98 3.18
4706 5199 0.039708 GTCACGTATAGGCGGTAGGC 60.040 60.000 0.00 0.00 44.19 3.93
4715 5208 2.282603 GCGGTAGGCCCAAACCAA 60.283 61.111 17.23 0.00 35.35 3.67
4716 5209 2.632544 GCGGTAGGCCCAAACCAAC 61.633 63.158 17.23 6.96 35.35 3.77
4717 5210 2.329614 CGGTAGGCCCAAACCAACG 61.330 63.158 17.23 0.07 35.35 4.10
4718 5211 1.073548 GGTAGGCCCAAACCAACGA 59.926 57.895 13.35 0.00 35.73 3.85
4719 5212 0.537828 GGTAGGCCCAAACCAACGAA 60.538 55.000 13.35 0.00 35.73 3.85
4720 5213 0.594602 GTAGGCCCAAACCAACGAAC 59.405 55.000 0.00 0.00 0.00 3.95
4721 5214 0.537828 TAGGCCCAAACCAACGAACC 60.538 55.000 0.00 0.00 0.00 3.62
4722 5215 2.128507 GGCCCAAACCAACGAACCA 61.129 57.895 0.00 0.00 0.00 3.67
4723 5216 1.468506 GGCCCAAACCAACGAACCAT 61.469 55.000 0.00 0.00 0.00 3.55
4724 5217 0.391228 GCCCAAACCAACGAACCATT 59.609 50.000 0.00 0.00 0.00 3.16
4725 5218 1.202592 GCCCAAACCAACGAACCATTT 60.203 47.619 0.00 0.00 0.00 2.32
4726 5219 2.743510 GCCCAAACCAACGAACCATTTT 60.744 45.455 0.00 0.00 0.00 1.82
4727 5220 3.536570 CCCAAACCAACGAACCATTTTT 58.463 40.909 0.00 0.00 0.00 1.94
4755 5248 3.719173 GGAAACCAACGAACCATTGAA 57.281 42.857 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.494271 TGTATTTGCTTTGGTTTTGCATAATAA 57.506 25.926 0.00 0.00 36.55 1.40
4 5 9.494271 TTGTATTTGCTTTGGTTTTGCATAATA 57.506 25.926 0.00 0.00 36.55 0.98
10 11 6.117911 AGTTTGTATTTGCTTTGGTTTTGC 57.882 33.333 0.00 0.00 0.00 3.68
11 12 8.848528 CAAAAGTTTGTATTTGCTTTGGTTTTG 58.151 29.630 0.00 0.00 32.32 2.44
12 13 8.962857 CAAAAGTTTGTATTTGCTTTGGTTTT 57.037 26.923 0.00 0.00 32.32 2.43
30 31 4.385825 TCATGAACTCCGCTACAAAAGTT 58.614 39.130 0.00 0.00 34.78 2.66
40 41 2.417719 ACTGAAACTCATGAACTCCGC 58.582 47.619 0.00 0.00 0.00 5.54
41 42 5.424121 AAAACTGAAACTCATGAACTCCG 57.576 39.130 0.00 0.00 0.00 4.63
109 110 1.666553 ACCCACACGCATACACACG 60.667 57.895 0.00 0.00 0.00 4.49
110 111 1.866237 CACCCACACGCATACACAC 59.134 57.895 0.00 0.00 0.00 3.82
112 113 2.867472 GCACCCACACGCATACAC 59.133 61.111 0.00 0.00 0.00 2.90
113 114 2.740440 CGCACCCACACGCATACA 60.740 61.111 0.00 0.00 0.00 2.29
133 134 1.138636 CTCTCTCTCACGCATGCACG 61.139 60.000 19.57 7.82 39.50 5.34
134 135 0.172127 TCTCTCTCTCACGCATGCAC 59.828 55.000 19.57 0.00 0.00 4.57
135 136 0.455005 CTCTCTCTCTCACGCATGCA 59.545 55.000 19.57 0.00 0.00 3.96
138 139 2.170397 TCTCTCTCTCTCTCTCACGCAT 59.830 50.000 0.00 0.00 0.00 4.73
158 159 5.682943 ATTACACTACGCTCATCTCTCTC 57.317 43.478 0.00 0.00 0.00 3.20
159 160 7.569639 TTTATTACACTACGCTCATCTCTCT 57.430 36.000 0.00 0.00 0.00 3.10
160 161 8.630278 TTTTTATTACACTACGCTCATCTCTC 57.370 34.615 0.00 0.00 0.00 3.20
187 188 7.014615 TCTTATGACTAAGCACACTTGGTGAC 61.015 42.308 4.62 0.00 46.48 3.67
241 395 7.653311 GCCACAAAGTTTCAGATTTTCACTATT 59.347 33.333 0.00 0.00 0.00 1.73
242 396 7.147976 GCCACAAAGTTTCAGATTTTCACTAT 58.852 34.615 0.00 0.00 0.00 2.12
247 401 6.479660 TCAATGCCACAAAGTTTCAGATTTTC 59.520 34.615 0.00 0.00 0.00 2.29
280 434 9.930693 TGGTGACTTTTTAATTACACAAAGTTT 57.069 25.926 13.85 0.00 39.13 2.66
282 436 9.581099 CTTGGTGACTTTTTAATTACACAAAGT 57.419 29.630 13.03 13.03 41.19 2.66
283 437 9.581099 ACTTGGTGACTTTTTAATTACACAAAG 57.419 29.630 13.38 13.38 41.86 2.77
291 445 8.726068 CCACAAAAACTTGGTGACTTTTTAATT 58.274 29.630 0.00 0.00 34.52 1.40
292 446 8.097662 TCCACAAAAACTTGGTGACTTTTTAAT 58.902 29.630 0.00 0.00 34.52 1.40
294 448 6.869388 GTCCACAAAAACTTGGTGACTTTTTA 59.131 34.615 0.00 0.00 34.52 1.52
295 449 5.699001 GTCCACAAAAACTTGGTGACTTTTT 59.301 36.000 0.00 0.00 34.52 1.94
296 450 5.221541 TGTCCACAAAAACTTGGTGACTTTT 60.222 36.000 0.00 0.00 34.52 2.27
297 451 4.282195 TGTCCACAAAAACTTGGTGACTTT 59.718 37.500 0.00 0.00 34.52 2.66
298 452 3.829601 TGTCCACAAAAACTTGGTGACTT 59.170 39.130 0.00 0.00 34.52 3.01
299 453 3.426615 TGTCCACAAAAACTTGGTGACT 58.573 40.909 0.00 0.00 34.52 3.41
300 454 3.859411 TGTCCACAAAAACTTGGTGAC 57.141 42.857 0.00 0.00 34.52 3.67
301 455 4.873746 TTTGTCCACAAAAACTTGGTGA 57.126 36.364 2.29 0.00 42.26 4.02
329 483 7.438564 TGTTATTTTATGTATGAGCGCCTAGA 58.561 34.615 2.29 0.00 0.00 2.43
357 511 2.481795 GCACACAAGTTTGAGCACCAAT 60.482 45.455 0.00 0.00 34.23 3.16
364 518 3.119884 TCAACAGTGCACACAAGTTTGAG 60.120 43.478 21.04 6.76 32.24 3.02
369 523 1.739466 CACTCAACAGTGCACACAAGT 59.261 47.619 21.04 11.58 43.77 3.16
370 524 2.463553 CACTCAACAGTGCACACAAG 57.536 50.000 21.04 10.95 43.77 3.16
423 577 1.227853 GGTGCCCATATGACGTCCC 60.228 63.158 14.12 0.00 0.00 4.46
456 610 8.316046 GCATTGATTATGACAAAATGACTTTCG 58.684 33.333 0.00 0.00 36.26 3.46
458 612 8.483307 GGCATTGATTATGACAAAATGACTTT 57.517 30.769 0.00 0.00 42.29 2.66
478 632 5.138125 ACAATCTGAAATTTCGTGGCATT 57.862 34.783 13.34 4.39 0.00 3.56
530 686 1.672854 CGGCTCCATCGTACCTCCAA 61.673 60.000 0.00 0.00 0.00 3.53
536 692 2.027751 GGCTCGGCTCCATCGTAC 59.972 66.667 0.00 0.00 0.00 3.67
540 696 0.106708 TAATGTGGCTCGGCTCCATC 59.893 55.000 0.00 0.00 35.81 3.51
548 704 4.183865 TCAGAGATTTGTAATGTGGCTCG 58.816 43.478 0.00 0.00 0.00 5.03
614 771 1.138859 TCATATGTGGTCTGGCGGAAG 59.861 52.381 0.00 0.00 0.00 3.46
615 772 1.199615 TCATATGTGGTCTGGCGGAA 58.800 50.000 0.00 0.00 0.00 4.30
617 774 1.875514 CATTCATATGTGGTCTGGCGG 59.124 52.381 1.90 0.00 0.00 6.13
619 776 4.202441 AGTTCATTCATATGTGGTCTGGC 58.798 43.478 1.90 0.00 33.34 4.85
620 777 6.764308 AAAGTTCATTCATATGTGGTCTGG 57.236 37.500 1.90 0.00 33.34 3.86
622 779 8.408043 TGAAAAAGTTCATTCATATGTGGTCT 57.592 30.769 1.90 0.00 38.88 3.85
623 780 9.474920 TTTGAAAAAGTTCATTCATATGTGGTC 57.525 29.630 1.90 0.00 43.29 4.02
625 782 9.695526 TCTTTGAAAAAGTTCATTCATATGTGG 57.304 29.630 1.90 0.00 43.29 4.17
779 937 2.930562 GGGAGGGGCACACACTCT 60.931 66.667 0.00 0.00 0.00 3.24
886 1048 2.793278 TTCTCTTTTCTTTTGGGCGC 57.207 45.000 0.00 0.00 0.00 6.53
911 1079 3.886550 AAGGGGCCGGAAAAGCAGG 62.887 63.158 5.05 0.00 34.63 4.85
923 1091 3.029981 ATGGGGGAAGGAAGGGGC 61.030 66.667 0.00 0.00 0.00 5.80
934 1103 0.179000 CGAACAGAGGAAGATGGGGG 59.821 60.000 0.00 0.00 0.00 5.40
956 1125 0.252284 AGTGGAGTACTGGAGTGGGG 60.252 60.000 0.00 0.00 38.49 4.96
1071 1247 0.179134 CCCAGTCGAAGTAGGCGAAG 60.179 60.000 0.00 0.00 39.73 3.79
1171 1347 1.374560 CAGTTGGTGGTCACGTTCAA 58.625 50.000 0.00 0.00 0.00 2.69
1272 1448 4.760047 GTGACGCCGTCCTGCCAT 62.760 66.667 15.60 0.00 0.00 4.40
1444 1620 3.103890 GGGGAAGGGGATGGGGAC 61.104 72.222 0.00 0.00 0.00 4.46
1524 1700 3.013327 TCGAGGGACCTCCGGAGA 61.013 66.667 33.39 7.42 39.77 3.71
1633 1809 0.249489 ACATTGATCCGCTCGTAGGC 60.249 55.000 0.00 0.00 0.00 3.93
1749 1925 1.988406 GGTGTAGGAGCCCTCGGTT 60.988 63.158 0.00 0.00 34.61 4.44
1794 1970 6.384015 AGGAGTATGACTGTCCAACATGAATA 59.616 38.462 5.17 0.00 32.23 1.75
1797 1973 4.096681 AGGAGTATGACTGTCCAACATGA 58.903 43.478 5.17 0.00 32.23 3.07
1803 1979 3.099905 CAGGAAGGAGTATGACTGTCCA 58.900 50.000 5.17 0.00 32.23 4.02
1812 1988 2.642171 TGGTGACCAGGAAGGAGTAT 57.358 50.000 0.00 0.00 41.22 2.12
1842 2018 0.459899 CATAGTAGTCGGTGCTGGCA 59.540 55.000 0.00 0.00 0.00 4.92
1896 2075 1.944676 GGTGAGCTTATCGACGGCG 60.945 63.158 2.87 2.87 39.35 6.46
1929 2117 1.916181 CCCTGGGAGTTGGAGTAATGT 59.084 52.381 7.01 0.00 0.00 2.71
2022 2210 5.127356 AGCAGTAAGTAAGTACCTGATGGAC 59.873 44.000 0.00 0.00 37.04 4.02
2038 2226 0.741221 GGCGTGGAGGAAGCAGTAAG 60.741 60.000 0.00 0.00 0.00 2.34
2166 2386 8.908903 ACATCAGTAGTAACATTCCAAACAAAA 58.091 29.630 0.00 0.00 0.00 2.44
2191 2411 2.842208 TGTGTGTTTTACAGCAGCAC 57.158 45.000 0.00 0.00 40.69 4.40
2307 2562 1.005748 CGGCTGACTCTGCAACAGA 60.006 57.895 9.83 0.00 38.25 3.41
2308 2563 2.675056 GCGGCTGACTCTGCAACAG 61.675 63.158 9.83 0.00 38.21 3.16
2321 2576 3.610669 CTATGAGCTCGGGCGGCT 61.611 66.667 9.56 0.00 44.37 5.52
2410 2665 2.574369 ACACTCCGGGGACATTGAATAA 59.426 45.455 9.33 0.00 0.00 1.40
2424 2679 3.058224 GGAAATCCAGTTTGAACACTCCG 60.058 47.826 0.00 0.00 35.64 4.63
2499 2754 5.514500 TCTCCATAAAGCCTTTGTAGGTT 57.486 39.130 0.00 0.00 44.00 3.50
2523 2778 3.906998 TGTGGCGTTGTTTTGGAATATG 58.093 40.909 0.00 0.00 0.00 1.78
2547 2802 2.182827 TCCAAGTGATAGCTCTGCACT 58.817 47.619 9.48 9.48 44.15 4.40
2598 2854 4.590222 AGGAAATGAAAGGTGTTGCAAGAT 59.410 37.500 0.00 0.00 0.00 2.40
2604 2860 6.039717 TGAAGAAGAGGAAATGAAAGGTGTTG 59.960 38.462 0.00 0.00 0.00 3.33
2605 2861 6.129179 TGAAGAAGAGGAAATGAAAGGTGTT 58.871 36.000 0.00 0.00 0.00 3.32
2606 2862 5.694995 TGAAGAAGAGGAAATGAAAGGTGT 58.305 37.500 0.00 0.00 0.00 4.16
2607 2863 6.127786 GGATGAAGAAGAGGAAATGAAAGGTG 60.128 42.308 0.00 0.00 0.00 4.00
2608 2864 5.948758 GGATGAAGAAGAGGAAATGAAAGGT 59.051 40.000 0.00 0.00 0.00 3.50
2609 2865 5.948162 TGGATGAAGAAGAGGAAATGAAAGG 59.052 40.000 0.00 0.00 0.00 3.11
2610 2866 6.883217 TCTGGATGAAGAAGAGGAAATGAAAG 59.117 38.462 0.00 0.00 0.00 2.62
2611 2867 6.782986 TCTGGATGAAGAAGAGGAAATGAAA 58.217 36.000 0.00 0.00 0.00 2.69
2612 2868 6.378661 TCTGGATGAAGAAGAGGAAATGAA 57.621 37.500 0.00 0.00 0.00 2.57
2613 2869 6.386342 AGATCTGGATGAAGAAGAGGAAATGA 59.614 38.462 0.00 0.00 0.00 2.57
2649 2906 8.877864 TGAAAATGAGAATAACCAACCATAGT 57.122 30.769 0.00 0.00 0.00 2.12
2661 2918 8.159447 CCATAGTCCATCCTGAAAATGAGAATA 58.841 37.037 0.00 0.00 0.00 1.75
2662 2919 7.002879 CCATAGTCCATCCTGAAAATGAGAAT 58.997 38.462 0.00 0.00 0.00 2.40
2668 2925 6.548622 CACAATCCATAGTCCATCCTGAAAAT 59.451 38.462 0.00 0.00 0.00 1.82
2822 3083 6.034591 CGGGTTTCTGTTGACTACTACTATG 58.965 44.000 0.00 0.00 0.00 2.23
2827 3088 4.401022 TCTCGGGTTTCTGTTGACTACTA 58.599 43.478 0.00 0.00 0.00 1.82
2828 3089 3.228453 TCTCGGGTTTCTGTTGACTACT 58.772 45.455 0.00 0.00 0.00 2.57
2829 3090 3.655276 TCTCGGGTTTCTGTTGACTAC 57.345 47.619 0.00 0.00 0.00 2.73
2830 3091 4.675976 TTTCTCGGGTTTCTGTTGACTA 57.324 40.909 0.00 0.00 0.00 2.59
2882 3143 5.901276 CCCCAGGTTACAACTACCTTCTATA 59.099 44.000 0.00 0.00 43.45 1.31
2975 3239 9.502035 TCTCCTAGAAAATATTAGAAGGACCAA 57.498 33.333 0.00 0.00 0.00 3.67
2993 3257 1.613925 CCATTCCGCGAATCTCCTAGA 59.386 52.381 8.23 0.00 28.87 2.43
3152 3423 5.528320 AGCCAAAAAGGATTGTTTGAATGTG 59.472 36.000 0.00 0.00 41.22 3.21
3201 3480 8.627208 ATGTTTTCAGTTCATCACTTACAGAT 57.373 30.769 0.00 0.00 30.92 2.90
3247 3539 0.621571 ATAGCAGTTCCCTGGCTGGA 60.622 55.000 12.58 1.72 39.22 3.86
3301 3608 2.446435 ACCTCCCAAATCAATCAACGG 58.554 47.619 0.00 0.00 0.00 4.44
3324 3631 3.817647 GGAATACCTGCATTCTCATCCAC 59.182 47.826 0.00 0.00 35.61 4.02
3329 3636 1.140852 CCGGGAATACCTGCATTCTCA 59.859 52.381 0.00 0.00 40.99 3.27
3378 3685 3.949586 TTCCATATCCCTGCATTGTCA 57.050 42.857 0.00 0.00 0.00 3.58
3611 3922 8.227791 GCAATACAACATCCTACCGTTATATTG 58.772 37.037 8.28 8.28 41.84 1.90
3625 3937 4.952262 TCTCTGCAAGCAATACAACATC 57.048 40.909 0.00 0.00 0.00 3.06
3626 3938 4.520111 TGTTCTCTGCAAGCAATACAACAT 59.480 37.500 0.00 0.00 0.00 2.71
3631 3945 5.557891 AGATTGTTCTCTGCAAGCAATAC 57.442 39.130 0.00 0.00 35.01 1.89
3682 3996 1.752833 GACACCGTCTTCCCAACCT 59.247 57.895 0.00 0.00 0.00 3.50
3768 4086 4.039004 TCATTTCCACAAAACAGGTCCATG 59.961 41.667 0.00 0.00 0.00 3.66
3789 4107 4.846367 TGATTTTCTCTCCTCCTTTCCTCA 59.154 41.667 0.00 0.00 0.00 3.86
3791 4109 6.445139 TGTATGATTTTCTCTCCTCCTTTCCT 59.555 38.462 0.00 0.00 0.00 3.36
3792 4110 6.653989 TGTATGATTTTCTCTCCTCCTTTCC 58.346 40.000 0.00 0.00 0.00 3.13
3794 4112 7.108847 CACTGTATGATTTTCTCTCCTCCTTT 58.891 38.462 0.00 0.00 0.00 3.11
3796 4114 5.130145 CCACTGTATGATTTTCTCTCCTCCT 59.870 44.000 0.00 0.00 0.00 3.69
3797 4115 5.363939 CCACTGTATGATTTTCTCTCCTCC 58.636 45.833 0.00 0.00 0.00 4.30
3805 4124 3.191162 TGCACTGCCACTGTATGATTTTC 59.809 43.478 0.00 0.00 0.00 2.29
3806 4125 3.156293 TGCACTGCCACTGTATGATTTT 58.844 40.909 0.00 0.00 0.00 1.82
3846 4165 7.565680 TCCATTGCTTTAAACTAACCCAAAAA 58.434 30.769 0.00 0.00 0.00 1.94
3865 4219 1.205966 ACAATTGGGGGCATCCATTG 58.794 50.000 10.83 13.79 36.58 2.82
3866 4220 2.247111 TCTACAATTGGGGGCATCCATT 59.753 45.455 10.83 0.00 36.58 3.16
3916 4272 3.614092 AGCACTACACATCTTGAATGGG 58.386 45.455 0.00 0.00 0.00 4.00
3931 4287 6.866770 CACACAAAAACTAGCTAGTAGCACTA 59.133 38.462 26.29 7.83 45.56 2.74
3935 4291 7.331193 ACATACACACAAAAACTAGCTAGTAGC 59.669 37.037 26.29 14.62 42.84 3.58
3936 4292 8.648097 CACATACACACAAAAACTAGCTAGTAG 58.352 37.037 26.29 17.71 34.99 2.57
3937 4293 8.145767 ACACATACACACAAAAACTAGCTAGTA 58.854 33.333 26.29 7.45 34.99 1.82
3938 4294 6.990349 ACACATACACACAAAAACTAGCTAGT 59.010 34.615 20.95 20.95 38.39 2.57
3939 4295 7.421530 ACACATACACACAAAAACTAGCTAG 57.578 36.000 19.44 19.44 0.00 3.42
3940 4296 7.795482 AACACATACACACAAAAACTAGCTA 57.205 32.000 0.00 0.00 0.00 3.32
3941 4297 6.693315 AACACATACACACAAAAACTAGCT 57.307 33.333 0.00 0.00 0.00 3.32
3942 4298 8.126700 AGTAAACACATACACACAAAAACTAGC 58.873 33.333 0.00 0.00 0.00 3.42
3993 4349 1.315257 CCGGTCCAAATCCAAGCTGG 61.315 60.000 0.00 0.00 39.43 4.85
4035 4391 1.946768 CCAAGTTGGTACCCATATGCG 59.053 52.381 14.21 0.00 31.53 4.73
4067 4433 3.107601 CATGACAACTTCCTCCCCTCTA 58.892 50.000 0.00 0.00 0.00 2.43
4085 4451 7.254522 CCTTTTCAGTCCAATTTCAAACACATG 60.255 37.037 0.00 0.00 0.00 3.21
4120 4486 8.523523 TGCTTGCATATATAATCACAAAATGC 57.476 30.769 0.00 0.00 38.90 3.56
4122 4488 7.816031 GCCTGCTTGCATATATAATCACAAAAT 59.184 33.333 0.00 0.00 0.00 1.82
4152 4572 1.485066 ACCAGTCTTCCAGTTGTCGTT 59.515 47.619 0.00 0.00 0.00 3.85
4164 4584 3.261981 AGAACGACAACAACCAGTCTT 57.738 42.857 0.00 0.00 32.68 3.01
4167 4587 3.195661 GAGAAGAACGACAACAACCAGT 58.804 45.455 0.00 0.00 0.00 4.00
4183 4603 4.533919 ACTGAACAGACATCAGGAGAAG 57.466 45.455 8.87 0.00 46.81 2.85
4187 4607 3.136443 ACCAAACTGAACAGACATCAGGA 59.864 43.478 8.87 0.00 46.81 3.86
4191 4611 5.506317 CCAAGAACCAAACTGAACAGACATC 60.506 44.000 8.87 0.00 0.00 3.06
4192 4612 4.339247 CCAAGAACCAAACTGAACAGACAT 59.661 41.667 8.87 0.00 0.00 3.06
4201 4623 0.032540 GCCAGCCAAGAACCAAACTG 59.967 55.000 0.00 0.00 0.00 3.16
4216 4638 0.326264 AACCAAGAGCTACCTGCCAG 59.674 55.000 0.00 0.00 44.23 4.85
4220 4642 3.935828 GCTAAGAAACCAAGAGCTACCTG 59.064 47.826 0.00 0.00 0.00 4.00
4229 4651 4.152607 GCAAGTCTGCTAAGAAACCAAG 57.847 45.455 0.00 0.00 45.74 3.61
4246 4668 1.283793 CTGCTTGAACGTGGGCAAG 59.716 57.895 17.03 17.03 43.26 4.01
4250 4672 0.036010 ATCTCCTGCTTGAACGTGGG 60.036 55.000 0.00 0.00 0.00 4.61
4350 4782 8.925700 GGCCAACTCTTCATTTGTTATAAAAAG 58.074 33.333 0.00 0.00 0.00 2.27
4351 4783 8.646900 AGGCCAACTCTTCATTTGTTATAAAAA 58.353 29.630 5.01 0.00 0.00 1.94
4352 4784 8.087750 CAGGCCAACTCTTCATTTGTTATAAAA 58.912 33.333 5.01 0.00 0.00 1.52
4353 4785 7.450014 TCAGGCCAACTCTTCATTTGTTATAAA 59.550 33.333 5.01 0.00 0.00 1.40
4354 4786 6.945435 TCAGGCCAACTCTTCATTTGTTATAA 59.055 34.615 5.01 0.00 0.00 0.98
4357 4789 4.724399 TCAGGCCAACTCTTCATTTGTTA 58.276 39.130 5.01 0.00 0.00 2.41
4358 4790 3.565307 TCAGGCCAACTCTTCATTTGTT 58.435 40.909 5.01 0.00 0.00 2.83
4359 4791 3.228188 TCAGGCCAACTCTTCATTTGT 57.772 42.857 5.01 0.00 0.00 2.83
4360 4792 4.219070 TGATTCAGGCCAACTCTTCATTTG 59.781 41.667 5.01 0.00 0.00 2.32
4361 4793 4.410099 TGATTCAGGCCAACTCTTCATTT 58.590 39.130 5.01 0.00 0.00 2.32
4362 4794 4.015084 CTGATTCAGGCCAACTCTTCATT 58.985 43.478 5.01 0.00 0.00 2.57
4363 4795 3.009916 ACTGATTCAGGCCAACTCTTCAT 59.990 43.478 17.66 0.00 35.51 2.57
4364 4796 2.373169 ACTGATTCAGGCCAACTCTTCA 59.627 45.455 17.66 0.00 35.51 3.02
4365 4797 3.064900 ACTGATTCAGGCCAACTCTTC 57.935 47.619 17.66 0.00 35.51 2.87
4366 4798 3.515602 AACTGATTCAGGCCAACTCTT 57.484 42.857 17.66 0.00 35.51 2.85
4368 4800 3.935828 GTCTAACTGATTCAGGCCAACTC 59.064 47.826 17.66 0.00 35.51 3.01
4370 4802 3.010420 GGTCTAACTGATTCAGGCCAAC 58.990 50.000 17.66 9.94 35.51 3.77
4371 4803 2.912956 AGGTCTAACTGATTCAGGCCAA 59.087 45.455 17.66 0.00 35.51 4.52
4372 4804 2.551270 AGGTCTAACTGATTCAGGCCA 58.449 47.619 17.66 1.89 35.51 5.36
4373 4805 3.274288 CAAGGTCTAACTGATTCAGGCC 58.726 50.000 17.66 0.00 35.51 5.19
4374 4806 2.680339 GCAAGGTCTAACTGATTCAGGC 59.320 50.000 17.66 4.58 35.51 4.85
4384 4862 9.162764 TGAGATACTTAATTTGCAAGGTCTAAC 57.837 33.333 0.00 0.00 0.00 2.34
4407 4886 8.310406 TCCTTGTAAATGTATGCGATTATGAG 57.690 34.615 0.00 0.00 0.00 2.90
4415 4894 4.882671 AGCTTCCTTGTAAATGTATGCG 57.117 40.909 0.00 0.00 0.00 4.73
4419 4898 7.990886 CCACCTATTAGCTTCCTTGTAAATGTA 59.009 37.037 0.00 0.00 0.00 2.29
4424 4903 5.962031 TCTCCACCTATTAGCTTCCTTGTAA 59.038 40.000 0.00 0.00 0.00 2.41
4427 4906 4.651503 TCTCTCCACCTATTAGCTTCCTTG 59.348 45.833 0.00 0.00 0.00 3.61
4428 4907 4.884961 TCTCTCCACCTATTAGCTTCCTT 58.115 43.478 0.00 0.00 0.00 3.36
4443 4922 9.748708 CAAACAAGACAAATTATTTTCTCTCCA 57.251 29.630 0.00 0.00 0.00 3.86
4444 4923 9.965824 TCAAACAAGACAAATTATTTTCTCTCC 57.034 29.630 0.00 0.00 0.00 3.71
4457 4937 3.788694 CGCGTCAAATCAAACAAGACAAA 59.211 39.130 0.00 0.00 0.00 2.83
4458 4938 3.358775 CGCGTCAAATCAAACAAGACAA 58.641 40.909 0.00 0.00 0.00 3.18
4459 4939 2.852901 GCGCGTCAAATCAAACAAGACA 60.853 45.455 8.43 0.00 0.00 3.41
4461 4941 1.601903 AGCGCGTCAAATCAAACAAGA 59.398 42.857 8.43 0.00 0.00 3.02
4462 4942 2.036556 AGCGCGTCAAATCAAACAAG 57.963 45.000 8.43 0.00 0.00 3.16
4474 4954 1.390463 CTAAACTTCAGGAAGCGCGTC 59.610 52.381 15.40 15.40 41.99 5.19
4478 4958 1.390463 GCGACTAAACTTCAGGAAGCG 59.610 52.381 8.89 4.85 41.99 4.68
4483 4963 1.275291 TCCTGGCGACTAAACTTCAGG 59.725 52.381 0.00 0.00 42.10 3.86
4489 4969 6.431198 TCAAATATTTCCTGGCGACTAAAC 57.569 37.500 0.00 0.00 0.00 2.01
4492 4972 7.556275 AGATTTTCAAATATTTCCTGGCGACTA 59.444 33.333 0.00 0.00 0.00 2.59
4494 4974 6.564328 AGATTTTCAAATATTTCCTGGCGAC 58.436 36.000 0.00 0.00 0.00 5.19
4496 4976 6.473455 GTGAGATTTTCAAATATTTCCTGGCG 59.527 38.462 0.00 0.00 37.61 5.69
4500 4980 9.525826 AGTGAGTGAGATTTTCAAATATTTCCT 57.474 29.630 0.00 0.00 37.61 3.36
4521 5001 4.727507 AGGCTTAGTCATGTGTAGTGAG 57.272 45.455 0.00 0.00 0.00 3.51
4532 5019 4.755123 GCAACTCAACTTTAGGCTTAGTCA 59.245 41.667 0.00 0.00 0.00 3.41
4533 5020 4.154375 GGCAACTCAACTTTAGGCTTAGTC 59.846 45.833 0.00 0.00 0.00 2.59
4534 5021 4.072839 GGCAACTCAACTTTAGGCTTAGT 58.927 43.478 0.00 0.00 0.00 2.24
4535 5022 3.440522 GGGCAACTCAACTTTAGGCTTAG 59.559 47.826 0.00 0.00 0.00 2.18
4539 5026 1.911057 AGGGCAACTCAACTTTAGGC 58.089 50.000 0.00 0.00 0.00 3.93
4562 5049 4.193826 TGCAACAAAAAGGCACAACTAA 57.806 36.364 0.00 0.00 31.58 2.24
4563 5050 3.876274 TGCAACAAAAAGGCACAACTA 57.124 38.095 0.00 0.00 31.58 2.24
4624 5116 1.588404 GTGCTACATGAACCATCGTCG 59.412 52.381 0.00 0.00 0.00 5.12
4630 5122 1.195442 TCGGGGTGCTACATGAACCA 61.195 55.000 0.00 0.00 46.69 3.67
4633 5126 1.134521 GTCATCGGGGTGCTACATGAA 60.135 52.381 0.00 0.00 0.00 2.57
4647 5140 1.854743 CTTGCATAGTGTCGGTCATCG 59.145 52.381 0.00 0.00 40.90 3.84
4655 5148 2.102252 CCTCTCCCTCTTGCATAGTGTC 59.898 54.545 0.00 0.00 0.00 3.67
4656 5149 2.114616 CCTCTCCCTCTTGCATAGTGT 58.885 52.381 0.00 0.00 0.00 3.55
4657 5150 1.415659 CCCTCTCCCTCTTGCATAGTG 59.584 57.143 0.00 0.00 0.00 2.74
4658 5151 1.799933 CCCTCTCCCTCTTGCATAGT 58.200 55.000 0.00 0.00 0.00 2.12
4659 5152 0.396060 GCCCTCTCCCTCTTGCATAG 59.604 60.000 0.00 0.00 0.00 2.23
4660 5153 1.056700 GGCCCTCTCCCTCTTGCATA 61.057 60.000 0.00 0.00 0.00 3.14
4661 5154 2.381941 GGCCCTCTCCCTCTTGCAT 61.382 63.158 0.00 0.00 0.00 3.96
4662 5155 3.011517 GGCCCTCTCCCTCTTGCA 61.012 66.667 0.00 0.00 0.00 4.08
4663 5156 2.304831 AAGGCCCTCTCCCTCTTGC 61.305 63.158 0.00 0.00 0.00 4.01
4664 5157 1.606531 CAAGGCCCTCTCCCTCTTG 59.393 63.158 0.00 0.00 0.00 3.02
4665 5158 2.304831 GCAAGGCCCTCTCCCTCTT 61.305 63.158 0.00 0.00 0.00 2.85
4666 5159 2.690510 GCAAGGCCCTCTCCCTCT 60.691 66.667 0.00 0.00 0.00 3.69
4667 5160 3.803162 GGCAAGGCCCTCTCCCTC 61.803 72.222 0.00 0.00 44.06 4.30
4677 5170 1.867233 CTATACGTGACATGGCAAGGC 59.133 52.381 19.11 0.00 0.00 4.35
4678 5171 2.483876 CCTATACGTGACATGGCAAGG 58.516 52.381 19.11 10.61 0.00 3.61
4679 5172 1.867233 GCCTATACGTGACATGGCAAG 59.133 52.381 13.41 13.41 40.04 4.01
4680 5173 1.804746 CGCCTATACGTGACATGGCAA 60.805 52.381 0.58 0.00 40.27 4.52
4681 5174 0.249280 CGCCTATACGTGACATGGCA 60.249 55.000 0.00 0.00 40.27 4.92
4682 5175 0.944311 CCGCCTATACGTGACATGGC 60.944 60.000 0.00 4.06 37.24 4.40
4683 5176 0.387929 ACCGCCTATACGTGACATGG 59.612 55.000 0.00 0.00 0.00 3.66
4684 5177 2.351447 CCTACCGCCTATACGTGACATG 60.351 54.545 0.00 0.00 0.00 3.21
4685 5178 1.884579 CCTACCGCCTATACGTGACAT 59.115 52.381 0.00 0.00 0.00 3.06
4686 5179 1.311859 CCTACCGCCTATACGTGACA 58.688 55.000 0.00 0.00 0.00 3.58
4687 5180 0.039708 GCCTACCGCCTATACGTGAC 60.040 60.000 0.00 0.00 0.00 3.67
4688 5181 2.334307 GCCTACCGCCTATACGTGA 58.666 57.895 0.00 0.00 0.00 4.35
4689 5182 4.959446 GCCTACCGCCTATACGTG 57.041 61.111 0.00 0.00 0.00 4.49
4698 5191 2.282603 TTGGTTTGGGCCTACCGC 60.283 61.111 19.12 0.55 44.64 5.68
4699 5192 2.329614 CGTTGGTTTGGGCCTACCG 61.330 63.158 19.12 7.64 44.64 4.02
4700 5193 0.537828 TTCGTTGGTTTGGGCCTACC 60.538 55.000 18.07 18.07 40.81 3.18
4701 5194 0.594602 GTTCGTTGGTTTGGGCCTAC 59.405 55.000 4.53 2.61 0.00 3.18
4702 5195 0.537828 GGTTCGTTGGTTTGGGCCTA 60.538 55.000 4.53 0.00 0.00 3.93
4703 5196 1.830847 GGTTCGTTGGTTTGGGCCT 60.831 57.895 4.53 0.00 0.00 5.19
4704 5197 1.468506 ATGGTTCGTTGGTTTGGGCC 61.469 55.000 0.00 0.00 0.00 5.80
4705 5198 0.391228 AATGGTTCGTTGGTTTGGGC 59.609 50.000 0.00 0.00 0.00 5.36
4706 5199 2.900716 AAATGGTTCGTTGGTTTGGG 57.099 45.000 0.00 0.00 0.00 4.12
4726 5219 2.736347 TCGTTGGTTTCCCCTCAAAAA 58.264 42.857 0.00 0.00 0.00 1.94
4727 5220 2.427812 GTTCGTTGGTTTCCCCTCAAAA 59.572 45.455 0.00 0.00 0.00 2.44
4728 5221 2.025898 GTTCGTTGGTTTCCCCTCAAA 58.974 47.619 0.00 0.00 0.00 2.69
4729 5222 1.682740 GTTCGTTGGTTTCCCCTCAA 58.317 50.000 0.00 0.00 0.00 3.02
4730 5223 0.179012 GGTTCGTTGGTTTCCCCTCA 60.179 55.000 0.00 0.00 0.00 3.86
4731 5224 0.179012 TGGTTCGTTGGTTTCCCCTC 60.179 55.000 0.00 0.00 0.00 4.30
4732 5225 0.481128 ATGGTTCGTTGGTTTCCCCT 59.519 50.000 0.00 0.00 0.00 4.79
4733 5226 1.000394 CAATGGTTCGTTGGTTTCCCC 60.000 52.381 0.00 0.00 0.00 4.81
4734 5227 1.957877 TCAATGGTTCGTTGGTTTCCC 59.042 47.619 0.77 0.00 31.92 3.97
4735 5228 3.719173 TTCAATGGTTCGTTGGTTTCC 57.281 42.857 0.77 0.00 31.92 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.