Multiple sequence alignment - TraesCS3D01G086300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G086300 chr3D 100.000 9322 0 0 1 9322 43778270 43787591 0.000000e+00 17215.0
1 TraesCS3D01G086300 chr3D 78.375 1600 275 51 2969 4549 73759511 73761058 0.000000e+00 972.0
2 TraesCS3D01G086300 chr3D 85.131 343 46 5 7987 8328 73764916 73765254 6.930000e-91 346.0
3 TraesCS3D01G086300 chr3D 81.879 298 43 5 5050 5341 73761506 73761798 3.360000e-59 241.0
4 TraesCS3D01G086300 chr3D 85.897 156 15 6 1580 1729 315480578 315480424 9.690000e-35 159.0
5 TraesCS3D01G086300 chr3D 96.000 50 2 0 4 53 379826302 379826351 2.160000e-11 82.4
6 TraesCS3D01G086300 chr3B 93.812 8128 402 53 828 8924 68406217 68398160 0.000000e+00 12129.0
7 TraesCS3D01G086300 chr3B 78.849 1546 254 53 2969 4488 119084301 119085799 0.000000e+00 976.0
8 TraesCS3D01G086300 chr3B 78.627 1544 260 51 2969 4488 136489428 136487931 0.000000e+00 959.0
9 TraesCS3D01G086300 chr3B 95.844 385 16 0 8540 8924 68438111 68438495 2.860000e-174 623.0
10 TraesCS3D01G086300 chr3B 89.730 370 27 5 8956 9322 68438481 68438842 6.590000e-126 462.0
11 TraesCS3D01G086300 chr3B 88.503 374 29 9 8956 9322 68398174 68397808 3.090000e-119 440.0
12 TraesCS3D01G086300 chr3B 84.046 351 52 4 8001 8350 119089941 119090288 1.500000e-87 335.0
13 TraesCS3D01G086300 chr3B 96.791 187 6 0 4703 4889 67947264 67947450 7.030000e-81 313.0
14 TraesCS3D01G086300 chr3B 94.000 200 12 0 1 200 68406928 68406729 4.230000e-78 303.0
15 TraesCS3D01G086300 chr3B 74.031 774 134 41 4601 5341 136487617 136486878 4.320000e-63 254.0
16 TraesCS3D01G086300 chr3B 93.631 157 9 1 4884 5040 68192315 68192470 5.630000e-57 233.0
17 TraesCS3D01G086300 chr3B 84.064 251 14 13 609 835 68406583 68406335 1.580000e-52 219.0
18 TraesCS3D01G086300 chr3B 85.987 157 14 5 1580 1729 404830318 404830473 2.690000e-35 161.0
19 TraesCS3D01G086300 chr3B 96.000 50 2 0 4 53 495475530 495475481 2.160000e-11 82.4
20 TraesCS3D01G086300 chr3A 94.012 5745 273 43 3131 8836 55563416 55557704 0.000000e+00 8637.0
21 TraesCS3D01G086300 chr3A 93.170 3177 162 26 4962 8108 55603335 55600184 0.000000e+00 4614.0
22 TraesCS3D01G086300 chr3A 93.593 1717 100 8 4962 6672 55605058 55603346 0.000000e+00 2553.0
23 TraesCS3D01G086300 chr3A 78.678 1604 275 50 2969 4549 86624726 86626285 0.000000e+00 1005.0
24 TraesCS3D01G086300 chr3A 93.833 600 30 7 2530 3126 55607171 55606576 0.000000e+00 896.0
25 TraesCS3D01G086300 chr3A 91.247 457 32 7 2085 2536 55607905 55607452 4.780000e-172 616.0
26 TraesCS3D01G086300 chr3A 92.371 367 18 8 8471 8836 55600083 55599726 1.800000e-141 514.0
27 TraesCS3D01G086300 chr3A 91.519 283 19 4 9044 9322 55557608 55557327 1.470000e-102 385.0
28 TraesCS3D01G086300 chr3A 90.813 283 21 4 9044 9322 55599602 55599321 3.180000e-99 374.0
29 TraesCS3D01G086300 chr3A 89.268 205 16 3 4 205 55573162 55572961 1.550000e-62 252.0
30 TraesCS3D01G086300 chr3A 89.268 205 16 3 4 205 55616931 55616730 1.550000e-62 252.0
31 TraesCS3D01G086300 chr3A 82.836 268 40 5 5076 5341 86626726 86626989 1.560000e-57 235.0
32 TraesCS3D01G086300 chr3A 90.123 162 8 3 598 751 55572969 55572808 4.410000e-48 204.0
33 TraesCS3D01G086300 chr3A 90.123 162 8 3 598 751 55616738 55616577 4.410000e-48 204.0
34 TraesCS3D01G086300 chr3A 97.030 101 3 0 8863 8963 55599732 55599632 4.480000e-38 171.0
35 TraesCS3D01G086300 chr3A 95.890 73 3 0 8863 8935 55557710 55557638 1.640000e-22 119.0
36 TraesCS3D01G086300 chrUn 93.492 1306 64 14 7532 8836 381218965 381220250 0.000000e+00 1921.0
37 TraesCS3D01G086300 chrUn 97.120 625 16 2 3693 4315 471930937 471931561 0.000000e+00 1053.0
38 TraesCS3D01G086300 chrUn 92.089 632 30 11 800 1413 463918090 463918719 0.000000e+00 872.0
39 TraesCS3D01G086300 chrUn 92.399 592 23 6 6717 7286 472805566 472806157 0.000000e+00 824.0
40 TraesCS3D01G086300 chrUn 93.686 491 30 1 5929 6418 475147720 475147230 0.000000e+00 734.0
41 TraesCS3D01G086300 chrUn 91.166 283 20 4 9044 9322 387676761 387676480 6.830000e-101 379.0
42 TraesCS3D01G086300 chrUn 91.166 283 20 4 9044 9322 388111092 388111373 6.830000e-101 379.0
43 TraesCS3D01G086300 chrUn 90.661 257 19 4 9044 9296 381220370 381220625 4.170000e-88 337.0
44 TraesCS3D01G086300 chrUn 89.423 208 16 3 1 205 32515218 32515422 3.340000e-64 257.0
45 TraesCS3D01G086300 chrUn 89.423 208 16 3 1 205 262108475 262108679 3.340000e-64 257.0
46 TraesCS3D01G086300 chrUn 89.756 205 15 3 4 205 282922629 282922428 3.340000e-64 257.0
47 TraesCS3D01G086300 chrUn 90.123 162 8 3 598 751 32515414 32515575 4.410000e-48 204.0
48 TraesCS3D01G086300 chrUn 90.299 134 5 3 598 723 262108671 262108804 1.610000e-37 169.0
49 TraesCS3D01G086300 chrUn 90.299 134 5 3 598 723 282922436 282922303 1.610000e-37 169.0
50 TraesCS3D01G086300 chrUn 95.833 96 2 1 8863 8958 381220244 381220337 4.510000e-33 154.0
51 TraesCS3D01G086300 chr1A 94.568 405 9 4 204 597 582217403 582217805 1.720000e-171 614.0
52 TraesCS3D01G086300 chr1A 94.444 396 17 4 205 598 254184852 254185244 1.040000e-168 604.0
53 TraesCS3D01G086300 chr1A 85.987 157 14 6 1578 1728 297698385 297698231 2.690000e-35 161.0
54 TraesCS3D01G086300 chr7A 92.443 397 22 6 204 597 639742689 639742298 2.270000e-155 560.0
55 TraesCS3D01G086300 chr6A 92.191 397 20 6 201 597 501708268 501707883 1.370000e-152 551.0
56 TraesCS3D01G086300 chr6A 77.778 216 30 13 8711 8910 21068497 21068284 5.910000e-22 117.0
57 TraesCS3D01G086300 chr1B 92.388 381 23 4 206 583 7863386 7863009 1.070000e-148 538.0
58 TraesCS3D01G086300 chr4D 91.603 393 25 5 205 597 50979523 50979907 3.830000e-148 536.0
59 TraesCS3D01G086300 chr2D 91.479 399 21 8 205 600 256679676 256679288 3.830000e-148 536.0
60 TraesCS3D01G086300 chr2D 96.000 50 2 0 1 50 480566633 480566682 2.160000e-11 82.4
61 TraesCS3D01G086300 chr5B 91.451 386 27 6 206 590 615706047 615706427 8.290000e-145 525.0
62 TraesCS3D01G086300 chr5B 86.486 148 14 5 1579 1721 155715219 155715073 3.480000e-34 158.0
63 TraesCS3D01G086300 chr4A 90.500 400 24 9 200 597 654102946 654102559 4.990000e-142 516.0
64 TraesCS3D01G086300 chr7B 89.724 399 24 10 206 597 610817150 610817538 2.340000e-135 494.0
65 TraesCS3D01G086300 chr5A 80.697 373 49 9 1130 1485 590600691 590601057 1.540000e-67 268.0
66 TraesCS3D01G086300 chr2B 86.452 155 14 7 1578 1728 91043387 91043236 7.490000e-36 163.0
67 TraesCS3D01G086300 chr2B 85.714 154 17 4 1579 1728 403702282 403702434 3.480000e-34 158.0
68 TraesCS3D01G086300 chr6B 85.714 154 17 4 1579 1728 530128964 530129116 3.480000e-34 158.0
69 TraesCS3D01G086300 chr5D 84.242 165 16 6 1579 1736 233044595 233044434 1.620000e-32 152.0
70 TraesCS3D01G086300 chr6D 79.167 216 25 15 8711 8909 372251325 372251113 2.110000e-26 132.0
71 TraesCS3D01G086300 chr6D 77.907 172 18 15 8756 8910 372256685 372256517 1.290000e-13 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G086300 chr3D 43778270 43787591 9321 False 17215.000000 17215 100.000000 1 9322 1 chr3D.!!$F1 9321
1 TraesCS3D01G086300 chr3D 73759511 73765254 5743 False 519.666667 972 81.795000 2969 8328 3 chr3D.!!$F3 5359
2 TraesCS3D01G086300 chr3B 68397808 68406928 9120 True 3272.750000 12129 90.094750 1 9322 4 chr3B.!!$R2 9321
3 TraesCS3D01G086300 chr3B 119084301 119085799 1498 False 976.000000 976 78.849000 2969 4488 1 chr3B.!!$F3 1519
4 TraesCS3D01G086300 chr3B 136486878 136489428 2550 True 606.500000 959 76.329000 2969 5341 2 chr3B.!!$R3 2372
5 TraesCS3D01G086300 chr3B 68438111 68438842 731 False 542.500000 623 92.787000 8540 9322 2 chr3B.!!$F6 782
6 TraesCS3D01G086300 chr3A 55557327 55563416 6089 True 3047.000000 8637 93.807000 3131 9322 3 chr3A.!!$R1 6191
7 TraesCS3D01G086300 chr3A 55599321 55607905 8584 True 1391.142857 4614 93.151000 2085 9322 7 chr3A.!!$R3 7237
8 TraesCS3D01G086300 chr3A 86624726 86626989 2263 False 620.000000 1005 80.757000 2969 5341 2 chr3A.!!$F1 2372
9 TraesCS3D01G086300 chrUn 471930937 471931561 624 False 1053.000000 1053 97.120000 3693 4315 1 chrUn.!!$F3 622
10 TraesCS3D01G086300 chrUn 463918090 463918719 629 False 872.000000 872 92.089000 800 1413 1 chrUn.!!$F2 613
11 TraesCS3D01G086300 chrUn 472805566 472806157 591 False 824.000000 824 92.399000 6717 7286 1 chrUn.!!$F4 569
12 TraesCS3D01G086300 chrUn 381218965 381220625 1660 False 804.000000 1921 93.328667 7532 9296 3 chrUn.!!$F7 1764

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
249 250 0.107165 GCCCCTACACCCTCATGAAC 60.107 60.000 0.00 0.00 0.00 3.18 F
592 593 0.254747 CCCGGGTGCTGAAAATCCTA 59.745 55.000 14.18 0.00 0.00 2.94 F
643 749 1.006639 ACAAGTGGACAAAAGTGGGGT 59.993 47.619 0.00 0.00 0.00 4.95 F
1416 1696 1.206132 TCCGGTTAGTGTATGCAGTGG 59.794 52.381 0.00 0.00 0.00 4.00 F
2497 2782 0.652592 CGACATCGGACATCCTTTGC 59.347 55.000 0.00 0.00 35.37 3.68 F
2773 3357 1.153842 CGCACTACTGTGGCGATCA 60.154 57.895 15.09 0.00 43.97 2.92 F
3982 4578 1.276138 CCATTTGCAGGGGAAGTTTCC 59.724 52.381 2.17 2.17 46.82 3.13 F
4092 4688 2.658285 TGAAGCCATATTGGAGCTTGG 58.342 47.619 0.51 0.00 46.44 3.61 F
5201 6081 0.535553 TGGTTAAACGCAGGTGGGAC 60.536 55.000 0.37 0.00 0.00 4.46 F
5876 6798 0.326595 TGCTGAAATTCTGGCCCGTA 59.673 50.000 0.00 0.00 0.00 4.02 F
6885 10209 1.276705 ACCACACACACACACACACTA 59.723 47.619 0.00 0.00 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2054 2337 0.417841 AGGTCCCTGCTTCCTTCCTA 59.582 55.000 0.00 0.00 0.00 2.94 R
2055 2338 0.417841 TAGGTCCCTGCTTCCTTCCT 59.582 55.000 0.00 0.00 33.34 3.36 R
2058 2341 1.004862 GCTTTAGGTCCCTGCTTCCTT 59.995 52.381 0.00 0.00 33.34 3.36 R
2673 3256 0.887247 TGTGTACAATGGTGGCATGC 59.113 50.000 9.90 9.90 0.00 4.06 R
3431 4027 0.109272 CATGTGAGCTTGCTGCAAGG 60.109 55.000 35.43 21.27 45.94 3.61 R
4366 4969 1.933853 GCGGTGACCTTTGTAGCTATG 59.066 52.381 0.00 0.00 0.00 2.23 R
5186 6066 0.320073 CTTCGTCCCACCTGCGTTTA 60.320 55.000 0.00 0.00 0.00 2.01 R
5748 6669 1.338020 GCCATGTATGCTTAAGTGCCC 59.662 52.381 4.02 0.00 0.00 5.36 R
6827 10151 0.461548 CCTAGTCATGCAGAAGCCGA 59.538 55.000 0.00 0.00 41.13 5.54 R
7745 11107 1.607148 GTTATGCGCCCCTATTCAACC 59.393 52.381 4.18 0.00 0.00 3.77 R
8328 11777 1.071471 CCTTGTGGTTGCGAGACCT 59.929 57.895 8.78 0.00 40.47 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 3.194968 TGGATCGGAAGGAGTAGTTGAAC 59.805 47.826 0.00 0.00 0.00 3.18
61 62 4.380655 CGGAAGGAGTAGTTGAACAGGTAG 60.381 50.000 0.00 0.00 0.00 3.18
68 69 7.034397 GGAGTAGTTGAACAGGTAGACATAAC 58.966 42.308 0.00 0.00 0.00 1.89
74 75 4.521639 TGAACAGGTAGACATAACGACAGT 59.478 41.667 0.00 0.00 0.00 3.55
78 79 3.830755 AGGTAGACATAACGACAGTGGTT 59.169 43.478 6.19 6.19 0.00 3.67
134 135 7.227314 TGCTATGATCTGGCTACTGTAAAAATG 59.773 37.037 0.00 0.00 31.45 2.32
167 168 1.167851 CCATCAAGCGGCTTTCTTCA 58.832 50.000 13.53 0.00 0.00 3.02
171 172 1.002900 TCAAGCGGCTTTCTTCAAACG 60.003 47.619 13.53 0.00 0.00 3.60
200 201 6.207417 TGACTTTGTTGGAGATGAAGATTTCC 59.793 38.462 0.00 0.00 34.06 3.13
201 202 6.070656 ACTTTGTTGGAGATGAAGATTTCCA 58.929 36.000 0.00 0.00 40.34 3.53
202 203 5.964958 TTGTTGGAGATGAAGATTTCCAC 57.035 39.130 0.00 0.00 41.48 4.02
203 204 4.984295 TGTTGGAGATGAAGATTTCCACA 58.016 39.130 0.00 0.00 41.48 4.17
204 205 5.384336 TGTTGGAGATGAAGATTTCCACAA 58.616 37.500 0.00 0.00 41.48 3.33
205 206 5.474532 TGTTGGAGATGAAGATTTCCACAAG 59.525 40.000 0.00 0.00 41.48 3.16
206 207 5.503634 TGGAGATGAAGATTTCCACAAGA 57.496 39.130 0.00 0.00 37.82 3.02
207 208 5.494724 TGGAGATGAAGATTTCCACAAGAG 58.505 41.667 0.00 0.00 37.82 2.85
208 209 5.249163 TGGAGATGAAGATTTCCACAAGAGA 59.751 40.000 0.00 0.00 37.82 3.10
209 210 6.176183 GGAGATGAAGATTTCCACAAGAGAA 58.824 40.000 0.00 0.00 33.72 2.87
210 211 6.656693 GGAGATGAAGATTTCCACAAGAGAAA 59.343 38.462 0.00 0.00 37.61 2.52
211 212 7.338957 GGAGATGAAGATTTCCACAAGAGAAAT 59.661 37.037 0.00 0.00 44.57 2.17
212 213 8.053026 AGATGAAGATTTCCACAAGAGAAATG 57.947 34.615 3.62 0.00 42.53 2.32
213 214 7.668886 AGATGAAGATTTCCACAAGAGAAATGT 59.331 33.333 3.62 0.00 42.53 2.71
214 215 7.206981 TGAAGATTTCCACAAGAGAAATGTC 57.793 36.000 3.62 2.67 42.53 3.06
216 217 8.156820 TGAAGATTTCCACAAGAGAAATGTCTA 58.843 33.333 3.62 0.00 42.53 2.59
217 218 8.924511 AAGATTTCCACAAGAGAAATGTCTAA 57.075 30.769 3.62 0.00 42.53 2.10
218 219 8.329203 AGATTTCCACAAGAGAAATGTCTAAC 57.671 34.615 3.62 0.00 42.53 2.34
219 220 7.939039 AGATTTCCACAAGAGAAATGTCTAACA 59.061 33.333 3.62 0.00 42.53 2.41
220 221 7.496529 TTTCCACAAGAGAAATGTCTAACAG 57.503 36.000 0.00 0.00 32.80 3.16
221 222 4.997395 TCCACAAGAGAAATGTCTAACAGC 59.003 41.667 0.00 0.00 32.80 4.40
222 223 4.999950 CCACAAGAGAAATGTCTAACAGCT 59.000 41.667 0.00 0.00 32.80 4.24
223 224 5.121454 CCACAAGAGAAATGTCTAACAGCTC 59.879 44.000 0.00 0.00 32.80 4.09
224 225 5.121454 CACAAGAGAAATGTCTAACAGCTCC 59.879 44.000 0.00 0.00 32.80 4.70
225 226 4.479786 AGAGAAATGTCTAACAGCTCCC 57.520 45.455 0.00 0.00 32.80 4.30
228 229 3.054802 AGAAATGTCTAACAGCTCCCAGG 60.055 47.826 0.00 0.00 29.93 4.45
229 230 1.958288 ATGTCTAACAGCTCCCAGGT 58.042 50.000 0.00 0.00 0.00 4.00
230 231 7.549175 AGAAATGTCTAACAGCTCCCAGGTG 62.549 48.000 1.16 1.16 39.97 4.00
231 232 0.391793 GTCTAACAGCTCCCAGGTGC 60.392 60.000 2.47 2.47 46.94 5.01
232 233 1.078143 CTAACAGCTCCCAGGTGCC 60.078 63.158 7.11 0.00 46.94 5.01
233 234 2.543067 CTAACAGCTCCCAGGTGCCC 62.543 65.000 7.11 0.00 46.94 5.36
236 237 4.024984 AGCTCCCAGGTGCCCCTA 62.025 66.667 7.11 0.00 39.89 3.53
237 238 3.798511 GCTCCCAGGTGCCCCTAC 61.799 72.222 0.00 0.00 39.89 3.18
238 239 2.285368 CTCCCAGGTGCCCCTACA 60.285 66.667 0.00 0.00 39.89 2.74
239 240 2.609610 TCCCAGGTGCCCCTACAC 60.610 66.667 0.00 0.00 39.89 2.90
245 246 3.741325 GTGCCCCTACACCCTCAT 58.259 61.111 0.00 0.00 34.35 2.90
246 247 1.224592 GTGCCCCTACACCCTCATG 59.775 63.158 0.00 0.00 34.35 3.07
247 248 1.082019 TGCCCCTACACCCTCATGA 59.918 57.895 0.00 0.00 0.00 3.07
248 249 0.548926 TGCCCCTACACCCTCATGAA 60.549 55.000 0.00 0.00 0.00 2.57
249 250 0.107165 GCCCCTACACCCTCATGAAC 60.107 60.000 0.00 0.00 0.00 3.18
250 251 1.285280 CCCCTACACCCTCATGAACA 58.715 55.000 0.00 0.00 0.00 3.18
251 252 1.210478 CCCCTACACCCTCATGAACAG 59.790 57.143 0.00 0.00 0.00 3.16
252 253 1.909302 CCCTACACCCTCATGAACAGT 59.091 52.381 0.00 0.00 0.00 3.55
253 254 3.104512 CCCTACACCCTCATGAACAGTA 58.895 50.000 0.00 0.00 0.00 2.74
254 255 3.517901 CCCTACACCCTCATGAACAGTAA 59.482 47.826 0.00 0.00 0.00 2.24
255 256 4.019681 CCCTACACCCTCATGAACAGTAAA 60.020 45.833 0.00 0.00 0.00 2.01
256 257 5.339200 CCCTACACCCTCATGAACAGTAAAT 60.339 44.000 0.00 0.00 0.00 1.40
257 258 6.180472 CCTACACCCTCATGAACAGTAAATT 58.820 40.000 0.00 0.00 0.00 1.82
258 259 6.316390 CCTACACCCTCATGAACAGTAAATTC 59.684 42.308 0.00 0.00 0.00 2.17
259 260 5.630121 ACACCCTCATGAACAGTAAATTCA 58.370 37.500 0.00 0.00 40.25 2.57
260 261 6.248433 ACACCCTCATGAACAGTAAATTCAT 58.752 36.000 0.00 0.00 45.57 2.57
261 262 7.402054 ACACCCTCATGAACAGTAAATTCATA 58.598 34.615 0.00 0.00 43.39 2.15
262 263 8.055181 ACACCCTCATGAACAGTAAATTCATAT 58.945 33.333 0.00 0.00 43.39 1.78
263 264 8.906867 CACCCTCATGAACAGTAAATTCATATT 58.093 33.333 0.00 0.00 43.39 1.28
315 316 8.884124 TGAAACTTTCAGGGATCAAAGATTAT 57.116 30.769 9.54 0.00 34.08 1.28
316 317 8.960591 TGAAACTTTCAGGGATCAAAGATTATC 58.039 33.333 9.54 0.00 34.08 1.75
317 318 8.884124 AAACTTTCAGGGATCAAAGATTATCA 57.116 30.769 9.54 0.00 34.30 2.15
318 319 8.884124 AACTTTCAGGGATCAAAGATTATCAA 57.116 30.769 9.54 0.00 34.30 2.57
319 320 8.884124 ACTTTCAGGGATCAAAGATTATCAAA 57.116 30.769 9.54 0.00 34.30 2.69
320 321 8.964772 ACTTTCAGGGATCAAAGATTATCAAAG 58.035 33.333 9.54 0.00 34.30 2.77
321 322 7.886629 TTCAGGGATCAAAGATTATCAAAGG 57.113 36.000 0.00 0.00 0.00 3.11
322 323 6.973642 TCAGGGATCAAAGATTATCAAAGGT 58.026 36.000 0.00 0.00 0.00 3.50
323 324 7.413446 TCAGGGATCAAAGATTATCAAAGGTT 58.587 34.615 0.00 0.00 0.00 3.50
324 325 7.895429 TCAGGGATCAAAGATTATCAAAGGTTT 59.105 33.333 0.00 0.00 0.00 3.27
325 326 7.977853 CAGGGATCAAAGATTATCAAAGGTTTG 59.022 37.037 0.00 0.00 39.48 2.93
336 337 4.933505 TCAAAGGTTTGATGTTCATGCA 57.066 36.364 0.87 0.00 41.88 3.96
337 338 5.273674 TCAAAGGTTTGATGTTCATGCAA 57.726 34.783 0.87 0.00 41.88 4.08
338 339 5.668471 TCAAAGGTTTGATGTTCATGCAAA 58.332 33.333 0.87 0.00 41.88 3.68
339 340 5.754406 TCAAAGGTTTGATGTTCATGCAAAG 59.246 36.000 0.87 0.00 41.88 2.77
340 341 4.942761 AGGTTTGATGTTCATGCAAAGT 57.057 36.364 0.00 0.00 32.76 2.66
341 342 5.280654 AGGTTTGATGTTCATGCAAAGTT 57.719 34.783 0.00 0.00 32.76 2.66
342 343 5.673514 AGGTTTGATGTTCATGCAAAGTTT 58.326 33.333 0.00 0.00 32.76 2.66
343 344 6.114767 AGGTTTGATGTTCATGCAAAGTTTT 58.885 32.000 0.00 0.00 32.76 2.43
344 345 7.271511 AGGTTTGATGTTCATGCAAAGTTTTA 58.728 30.769 0.00 0.00 32.76 1.52
345 346 7.439056 AGGTTTGATGTTCATGCAAAGTTTTAG 59.561 33.333 0.00 0.00 32.76 1.85
346 347 7.437862 GGTTTGATGTTCATGCAAAGTTTTAGA 59.562 33.333 0.00 0.00 32.76 2.10
347 348 8.816144 GTTTGATGTTCATGCAAAGTTTTAGAA 58.184 29.630 0.00 0.00 32.76 2.10
348 349 8.939201 TTGATGTTCATGCAAAGTTTTAGAAA 57.061 26.923 0.00 0.00 0.00 2.52
349 350 8.351495 TGATGTTCATGCAAAGTTTTAGAAAC 57.649 30.769 0.00 0.00 0.00 2.78
350 351 7.978414 TGATGTTCATGCAAAGTTTTAGAAACA 59.022 29.630 6.35 0.00 0.00 2.83
351 352 8.715191 ATGTTCATGCAAAGTTTTAGAAACAA 57.285 26.923 6.35 0.00 0.00 2.83
352 353 8.539770 TGTTCATGCAAAGTTTTAGAAACAAA 57.460 26.923 6.35 0.00 0.00 2.83
353 354 9.160496 TGTTCATGCAAAGTTTTAGAAACAAAT 57.840 25.926 6.35 0.00 0.00 2.32
357 358 9.862585 CATGCAAAGTTTTAGAAACAAATAACC 57.137 29.630 6.35 0.00 0.00 2.85
358 359 9.830975 ATGCAAAGTTTTAGAAACAAATAACCT 57.169 25.926 6.35 0.00 0.00 3.50
359 360 9.660180 TGCAAAGTTTTAGAAACAAATAACCTT 57.340 25.926 6.35 0.00 0.00 3.50
363 364 9.511144 AAGTTTTAGAAACAAATAACCTTCGTG 57.489 29.630 6.35 0.00 0.00 4.35
364 365 8.895737 AGTTTTAGAAACAAATAACCTTCGTGA 58.104 29.630 6.35 0.00 0.00 4.35
365 366 9.505995 GTTTTAGAAACAAATAACCTTCGTGAA 57.494 29.630 0.00 0.00 0.00 3.18
366 367 9.724839 TTTTAGAAACAAATAACCTTCGTGAAG 57.275 29.630 2.57 2.57 38.14 3.02
367 368 5.758924 AGAAACAAATAACCTTCGTGAAGC 58.241 37.500 4.05 0.00 37.11 3.86
368 369 4.499037 AACAAATAACCTTCGTGAAGCC 57.501 40.909 4.05 0.00 37.11 4.35
369 370 2.817844 ACAAATAACCTTCGTGAAGCCC 59.182 45.455 4.05 0.00 37.11 5.19
370 371 3.081804 CAAATAACCTTCGTGAAGCCCT 58.918 45.455 4.05 0.00 37.11 5.19
371 372 2.693267 ATAACCTTCGTGAAGCCCTC 57.307 50.000 4.05 0.00 37.11 4.30
372 373 1.344065 TAACCTTCGTGAAGCCCTCA 58.656 50.000 4.05 0.00 37.11 3.86
380 381 3.935371 TGAAGCCCTCACCCAAAAA 57.065 47.368 0.00 0.00 0.00 1.94
403 404 8.898983 AAAAACAAAATCACTGCTCAAAAATG 57.101 26.923 0.00 0.00 0.00 2.32
404 405 7.614124 AAACAAAATCACTGCTCAAAAATGT 57.386 28.000 0.00 0.00 0.00 2.71
405 406 8.715191 AAACAAAATCACTGCTCAAAAATGTA 57.285 26.923 0.00 0.00 0.00 2.29
406 407 7.698836 ACAAAATCACTGCTCAAAAATGTAC 57.301 32.000 0.00 0.00 0.00 2.90
407 408 7.264221 ACAAAATCACTGCTCAAAAATGTACA 58.736 30.769 0.00 0.00 0.00 2.90
408 409 7.927629 ACAAAATCACTGCTCAAAAATGTACAT 59.072 29.630 1.41 1.41 0.00 2.29
409 410 9.409312 CAAAATCACTGCTCAAAAATGTACATA 57.591 29.630 9.21 0.00 0.00 2.29
410 411 9.979578 AAAATCACTGCTCAAAAATGTACATAA 57.020 25.926 9.21 0.00 0.00 1.90
411 412 9.979578 AAATCACTGCTCAAAAATGTACATAAA 57.020 25.926 9.21 0.00 0.00 1.40
412 413 8.970691 ATCACTGCTCAAAAATGTACATAAAC 57.029 30.769 9.21 0.00 0.00 2.01
413 414 8.165239 TCACTGCTCAAAAATGTACATAAACT 57.835 30.769 9.21 0.00 0.00 2.66
414 415 8.629158 TCACTGCTCAAAAATGTACATAAACTT 58.371 29.630 9.21 0.00 0.00 2.66
415 416 9.248291 CACTGCTCAAAAATGTACATAAACTTT 57.752 29.630 9.21 3.08 0.00 2.66
416 417 9.248291 ACTGCTCAAAAATGTACATAAACTTTG 57.752 29.630 9.21 15.07 0.00 2.77
417 418 9.462174 CTGCTCAAAAATGTACATAAACTTTGA 57.538 29.630 21.64 21.64 32.20 2.69
418 419 9.809096 TGCTCAAAAATGTACATAAACTTTGAA 57.191 25.926 22.42 13.83 32.61 2.69
457 458 6.801539 TTTATTTGAGTGCTCTTCGAATGT 57.198 33.333 0.00 0.00 0.00 2.71
458 459 6.801539 TTATTTGAGTGCTCTTCGAATGTT 57.198 33.333 0.00 0.00 0.00 2.71
459 460 7.899178 TTATTTGAGTGCTCTTCGAATGTTA 57.101 32.000 0.00 0.00 0.00 2.41
460 461 6.992063 ATTTGAGTGCTCTTCGAATGTTAT 57.008 33.333 0.00 0.00 0.00 1.89
461 462 6.801539 TTTGAGTGCTCTTCGAATGTTATT 57.198 33.333 0.00 0.00 0.00 1.40
462 463 6.801539 TTGAGTGCTCTTCGAATGTTATTT 57.198 33.333 0.00 0.00 0.00 1.40
463 464 6.801539 TGAGTGCTCTTCGAATGTTATTTT 57.198 33.333 0.00 0.00 0.00 1.82
464 465 7.202016 TGAGTGCTCTTCGAATGTTATTTTT 57.798 32.000 0.00 0.00 0.00 1.94
465 466 8.317891 TGAGTGCTCTTCGAATGTTATTTTTA 57.682 30.769 0.00 0.00 0.00 1.52
466 467 8.443160 TGAGTGCTCTTCGAATGTTATTTTTAG 58.557 33.333 0.00 0.00 0.00 1.85
467 468 7.244192 AGTGCTCTTCGAATGTTATTTTTAGC 58.756 34.615 0.00 0.00 0.00 3.09
468 469 7.119846 AGTGCTCTTCGAATGTTATTTTTAGCT 59.880 33.333 0.00 0.00 0.00 3.32
469 470 8.388103 GTGCTCTTCGAATGTTATTTTTAGCTA 58.612 33.333 0.00 0.00 0.00 3.32
470 471 8.941977 TGCTCTTCGAATGTTATTTTTAGCTAA 58.058 29.630 0.86 0.86 0.00 3.09
471 472 9.769093 GCTCTTCGAATGTTATTTTTAGCTAAA 57.231 29.630 14.96 14.96 0.00 1.85
485 486 9.762933 ATTTTTAGCTAAAACTTTGCAAGATCA 57.237 25.926 27.22 11.33 38.48 2.92
486 487 9.762933 TTTTTAGCTAAAACTTTGCAAGATCAT 57.237 25.926 27.22 0.00 35.14 2.45
487 488 8.970691 TTTAGCTAAAACTTTGCAAGATCATC 57.029 30.769 16.53 0.00 0.00 2.92
488 489 6.579666 AGCTAAAACTTTGCAAGATCATCA 57.420 33.333 0.00 0.00 0.00 3.07
489 490 6.985117 AGCTAAAACTTTGCAAGATCATCAA 58.015 32.000 0.00 0.00 0.00 2.57
490 491 7.436118 AGCTAAAACTTTGCAAGATCATCAAA 58.564 30.769 0.00 1.46 0.00 2.69
491 492 7.927629 AGCTAAAACTTTGCAAGATCATCAAAA 59.072 29.630 0.00 0.00 30.47 2.44
492 493 8.219105 GCTAAAACTTTGCAAGATCATCAAAAG 58.781 33.333 0.00 2.72 30.47 2.27
493 494 9.252962 CTAAAACTTTGCAAGATCATCAAAAGT 57.747 29.630 0.00 9.50 30.47 2.66
494 495 8.496707 AAAACTTTGCAAGATCATCAAAAGTT 57.503 26.923 16.93 16.93 30.47 2.66
495 496 8.496707 AAACTTTGCAAGATCATCAAAAGTTT 57.503 26.923 22.79 22.79 32.73 2.66
496 497 7.704789 ACTTTGCAAGATCATCAAAAGTTTC 57.295 32.000 0.00 0.00 30.47 2.78
497 498 7.267128 ACTTTGCAAGATCATCAAAAGTTTCA 58.733 30.769 0.00 0.00 30.47 2.69
498 499 7.929785 ACTTTGCAAGATCATCAAAAGTTTCAT 59.070 29.630 0.00 0.00 30.47 2.57
499 500 7.646446 TTGCAAGATCATCAAAAGTTTCATG 57.354 32.000 0.00 0.00 0.00 3.07
500 501 6.983984 TGCAAGATCATCAAAAGTTTCATGA 58.016 32.000 10.94 10.94 0.00 3.07
501 502 7.608153 TGCAAGATCATCAAAAGTTTCATGAT 58.392 30.769 17.17 17.17 38.44 2.45
503 504 7.544566 GCAAGATCATCAAAAGTTTCATGATGT 59.455 33.333 21.45 16.53 46.61 3.06
504 505 9.419297 CAAGATCATCAAAAGTTTCATGATGTT 57.581 29.630 21.45 19.76 46.61 2.71
505 506 9.635520 AAGATCATCAAAAGTTTCATGATGTTC 57.364 29.630 21.45 21.29 46.61 3.18
506 507 7.966753 AGATCATCAAAAGTTTCATGATGTTCG 59.033 33.333 21.45 5.21 45.79 3.95
507 508 7.200778 TCATCAAAAGTTTCATGATGTTCGA 57.799 32.000 21.45 7.37 46.61 3.71
508 509 7.819644 TCATCAAAAGTTTCATGATGTTCGAT 58.180 30.769 21.45 0.00 46.61 3.59
509 510 7.751793 TCATCAAAAGTTTCATGATGTTCGATG 59.248 33.333 21.45 4.26 46.61 3.84
510 511 6.969366 TCAAAAGTTTCATGATGTTCGATGT 58.031 32.000 0.00 0.00 0.00 3.06
511 512 7.077605 TCAAAAGTTTCATGATGTTCGATGTC 58.922 34.615 0.00 0.00 0.00 3.06
512 513 5.551760 AAGTTTCATGATGTTCGATGTCC 57.448 39.130 0.00 0.00 0.00 4.02
513 514 3.941483 AGTTTCATGATGTTCGATGTCCC 59.059 43.478 0.00 0.00 0.00 4.46
514 515 3.625649 TTCATGATGTTCGATGTCCCA 57.374 42.857 0.00 0.00 0.00 4.37
515 516 3.625649 TCATGATGTTCGATGTCCCAA 57.374 42.857 0.00 0.00 0.00 4.12
516 517 3.949132 TCATGATGTTCGATGTCCCAAA 58.051 40.909 0.00 0.00 0.00 3.28
517 518 3.940852 TCATGATGTTCGATGTCCCAAAG 59.059 43.478 0.00 0.00 0.00 2.77
518 519 3.417069 TGATGTTCGATGTCCCAAAGT 57.583 42.857 0.00 0.00 0.00 2.66
519 520 3.750371 TGATGTTCGATGTCCCAAAGTT 58.250 40.909 0.00 0.00 0.00 2.66
520 521 4.141287 TGATGTTCGATGTCCCAAAGTTT 58.859 39.130 0.00 0.00 0.00 2.66
521 522 4.215399 TGATGTTCGATGTCCCAAAGTTTC 59.785 41.667 0.00 0.00 0.00 2.78
522 523 3.546724 TGTTCGATGTCCCAAAGTTTCA 58.453 40.909 0.00 0.00 0.00 2.69
523 524 3.563808 TGTTCGATGTCCCAAAGTTTCAG 59.436 43.478 0.00 0.00 0.00 3.02
524 525 3.762407 TCGATGTCCCAAAGTTTCAGA 57.238 42.857 0.00 0.00 0.00 3.27
525 526 4.286297 TCGATGTCCCAAAGTTTCAGAT 57.714 40.909 0.00 0.00 0.00 2.90
526 527 4.651778 TCGATGTCCCAAAGTTTCAGATT 58.348 39.130 0.00 0.00 0.00 2.40
527 528 5.070001 TCGATGTCCCAAAGTTTCAGATTT 58.930 37.500 0.00 0.00 0.00 2.17
528 529 5.534654 TCGATGTCCCAAAGTTTCAGATTTT 59.465 36.000 0.00 0.00 0.00 1.82
529 530 6.040391 TCGATGTCCCAAAGTTTCAGATTTTT 59.960 34.615 0.00 0.00 0.00 1.94
562 563 8.792633 TGTTTTGAATTTACTGTTCATAGAGGG 58.207 33.333 0.00 0.00 35.68 4.30
563 564 8.793592 GTTTTGAATTTACTGTTCATAGAGGGT 58.206 33.333 0.00 0.00 35.68 4.34
564 565 7.921786 TTGAATTTACTGTTCATAGAGGGTG 57.078 36.000 0.00 0.00 35.68 4.61
565 566 7.016153 TGAATTTACTGTTCATAGAGGGTGT 57.984 36.000 0.00 0.00 31.07 4.16
566 567 8.141298 TGAATTTACTGTTCATAGAGGGTGTA 57.859 34.615 0.00 0.00 31.07 2.90
567 568 8.258007 TGAATTTACTGTTCATAGAGGGTGTAG 58.742 37.037 0.00 0.00 31.07 2.74
568 569 6.540438 TTTACTGTTCATAGAGGGTGTAGG 57.460 41.667 0.00 0.00 0.00 3.18
569 570 3.375699 ACTGTTCATAGAGGGTGTAGGG 58.624 50.000 0.00 0.00 0.00 3.53
570 571 2.700897 CTGTTCATAGAGGGTGTAGGGG 59.299 54.545 0.00 0.00 0.00 4.79
571 572 1.416772 GTTCATAGAGGGTGTAGGGGC 59.583 57.143 0.00 0.00 0.00 5.80
572 573 0.639943 TCATAGAGGGTGTAGGGGCA 59.360 55.000 0.00 0.00 0.00 5.36
573 574 0.759346 CATAGAGGGTGTAGGGGCAC 59.241 60.000 0.00 0.00 38.56 5.01
588 589 4.095590 CACCCGGGTGCTGAAAAT 57.904 55.556 39.44 4.30 39.39 1.82
589 590 1.883021 CACCCGGGTGCTGAAAATC 59.117 57.895 39.44 0.00 39.39 2.17
590 591 1.304134 ACCCGGGTGCTGAAAATCC 60.304 57.895 29.69 0.00 0.00 3.01
591 592 1.000896 CCCGGGTGCTGAAAATCCT 60.001 57.895 14.18 0.00 0.00 3.24
592 593 0.254747 CCCGGGTGCTGAAAATCCTA 59.745 55.000 14.18 0.00 0.00 2.94
593 594 1.133792 CCCGGGTGCTGAAAATCCTAT 60.134 52.381 14.18 0.00 0.00 2.57
594 595 2.222027 CCGGGTGCTGAAAATCCTATC 58.778 52.381 0.00 0.00 0.00 2.08
595 596 2.158755 CCGGGTGCTGAAAATCCTATCT 60.159 50.000 0.00 0.00 0.00 1.98
596 597 3.134458 CGGGTGCTGAAAATCCTATCTC 58.866 50.000 0.00 0.00 0.00 2.75
634 740 5.565509 TCATATGGCTAAACAAGTGGACAA 58.434 37.500 2.13 0.00 0.00 3.18
643 749 1.006639 ACAAGTGGACAAAAGTGGGGT 59.993 47.619 0.00 0.00 0.00 4.95
644 750 1.408702 CAAGTGGACAAAAGTGGGGTG 59.591 52.381 0.00 0.00 0.00 4.61
664 778 3.339731 GCTACAACAAGTGGCGCA 58.660 55.556 10.83 0.00 45.00 6.09
725 846 5.630415 AGTGTATGGCTACAATATGTGGT 57.370 39.130 0.00 0.00 39.51 4.16
784 918 7.207164 CATTCCATGCAAAACAAAACAAAAC 57.793 32.000 0.00 0.00 0.00 2.43
785 919 5.947228 TCCATGCAAAACAAAACAAAACA 57.053 30.435 0.00 0.00 0.00 2.83
786 920 6.317789 TCCATGCAAAACAAAACAAAACAA 57.682 29.167 0.00 0.00 0.00 2.83
787 921 6.738114 TCCATGCAAAACAAAACAAAACAAA 58.262 28.000 0.00 0.00 0.00 2.83
788 922 7.202526 TCCATGCAAAACAAAACAAAACAAAA 58.797 26.923 0.00 0.00 0.00 2.44
789 923 7.706179 TCCATGCAAAACAAAACAAAACAAAAA 59.294 25.926 0.00 0.00 0.00 1.94
800 934 9.500864 CAAAACAAAACAAAAATGGATTACAGG 57.499 29.630 0.00 0.00 0.00 4.00
870 1129 6.512091 GCATGATTTGACAACTTGCAAACAAT 60.512 34.615 0.00 7.33 36.89 2.71
908 1167 6.661805 TGTTTCTTTTTACCAACAGAAGGACT 59.338 34.615 0.00 0.00 0.00 3.85
1014 1277 3.069872 ACAGTTCAATGGCAGCAATTCAA 59.930 39.130 0.00 0.00 0.00 2.69
1118 1381 3.194755 TCTTCAGCGCAGGTTAATACTCA 59.805 43.478 11.47 0.00 33.74 3.41
1150 1421 4.092771 TCAACGTTGTCTAAGATCCTCG 57.907 45.455 26.47 0.00 0.00 4.63
1183 1454 5.761234 AGCTTCCGTGTAAACAGTGAAATAA 59.239 36.000 0.00 0.00 0.00 1.40
1257 1530 1.931172 CGAAGTTGAACAACGGAGTGT 59.069 47.619 11.21 0.00 45.00 3.55
1269 1542 5.695818 ACAACGGAGTGTGTAATTAATTGC 58.304 37.500 11.05 10.05 45.00 3.56
1398 1678 2.424956 GGAACTTCATGAAGCACCATCC 59.575 50.000 30.95 24.46 41.99 3.51
1416 1696 1.206132 TCCGGTTAGTGTATGCAGTGG 59.794 52.381 0.00 0.00 0.00 4.00
1431 1711 4.397420 TGCAGTGGTTCTACAAATGATGT 58.603 39.130 0.00 0.00 46.36 3.06
1442 1722 6.475504 TCTACAAATGATGTGGACACAAGAT 58.524 36.000 9.42 1.87 43.73 2.40
1458 1738 7.312657 ACACAAGATAATCAGCACATAACTG 57.687 36.000 0.00 0.00 36.44 3.16
1467 1747 5.947228 TCAGCACATAACTGAAAGAAAGG 57.053 39.130 0.00 0.00 41.10 3.11
1473 1753 7.284489 AGCACATAACTGAAAGAAAGGTAAACA 59.716 33.333 0.00 0.00 37.43 2.83
1491 1771 9.981114 AGGTAAACAAGGAAATAAAACTGAATG 57.019 29.630 0.00 0.00 0.00 2.67
1545 1826 2.967397 TGGAGGTCCAGCGTAACG 59.033 61.111 0.00 0.00 42.01 3.18
1572 1853 4.634012 ACATCAAACTGCAGTACCCTTA 57.366 40.909 22.01 3.23 0.00 2.69
1588 1869 3.013648 ACCCTTAAGTGATACTCCCTCCA 59.986 47.826 0.97 0.00 0.00 3.86
1609 1890 9.740239 CCTCCATTCACAAATATAAGATGTTTG 57.260 33.333 7.02 7.02 44.03 2.93
1634 1915 7.068103 TGGGATATTTCAACATGAACCACATAC 59.932 37.037 0.00 0.00 35.89 2.39
1662 1943 6.323739 ACTTAAATGAGTGAACAAACCCACAT 59.676 34.615 0.00 0.00 35.84 3.21
1666 1948 6.723298 ATGAGTGAACAAACCCACATAAAA 57.277 33.333 0.00 0.00 35.84 1.52
1726 2009 5.964477 TCTTATAGTTGTGAATGGAGGGAGT 59.036 40.000 0.00 0.00 0.00 3.85
1780 2063 6.513806 TGTAATAATCATGCAGCAAACTGT 57.486 33.333 0.00 0.00 46.30 3.55
1805 2088 5.615289 AGAATTAGAAGCACGGCATAGAAT 58.385 37.500 0.00 0.00 0.00 2.40
1818 2101 8.221766 GCACGGCATAGAATTTTAGATACTAAC 58.778 37.037 0.00 0.00 0.00 2.34
1886 2169 2.493278 GTGTGCAGCCTGAAATTGGTAT 59.507 45.455 0.00 0.00 0.00 2.73
1907 2190 4.168922 TGATGCTTCAAATCTTGTGCAG 57.831 40.909 0.00 0.00 41.38 4.41
1914 2197 5.574443 GCTTCAAATCTTGTGCAGTATTTCC 59.426 40.000 0.00 0.00 33.79 3.13
1915 2198 6.571150 GCTTCAAATCTTGTGCAGTATTTCCT 60.571 38.462 0.00 0.00 33.79 3.36
1916 2199 6.258230 TCAAATCTTGTGCAGTATTTCCTG 57.742 37.500 0.00 0.00 35.49 3.86
1968 2251 2.552315 CACTCCACAAAATAGGCGTGTT 59.448 45.455 0.00 0.00 36.22 3.32
1987 2270 9.209175 GGCGTGTTGAATAAATTCTATAGAGAT 57.791 33.333 2.02 0.00 37.67 2.75
2044 2327 1.301677 GGCTTTGCTTGGAGGACTCG 61.302 60.000 0.00 0.00 0.00 4.18
2092 2375 2.939103 CCTAAAGCACATGTCAGTAGCC 59.061 50.000 0.00 0.00 0.00 3.93
2113 2396 3.058016 CCATATGCGCCTTCTGGTTTATG 60.058 47.826 4.18 0.00 35.27 1.90
2424 2709 7.582667 TTGGAGATCTAGAAATACATGTCGA 57.417 36.000 0.00 0.00 0.00 4.20
2445 2730 5.950549 TCGACCTTATAAACTGGAAGAGAGT 59.049 40.000 0.00 0.00 37.43 3.24
2467 2752 9.213777 AGAGTGAGTATTAATCTTGGTCCATAA 57.786 33.333 0.00 0.00 0.00 1.90
2485 2770 7.957484 GGTCCATAATAAAATCATTCGACATCG 59.043 37.037 0.00 0.00 41.45 3.84
2495 2780 3.118775 TCATTCGACATCGGACATCCTTT 60.119 43.478 0.73 0.00 40.29 3.11
2497 2782 0.652592 CGACATCGGACATCCTTTGC 59.347 55.000 0.00 0.00 35.37 3.68
2519 2804 4.667161 GCGGAAACATTTTTGCATGACATG 60.667 41.667 11.27 11.27 32.75 3.21
2670 3253 6.265196 AGCTCTTTTGTGGAAACATGACAATA 59.735 34.615 0.00 0.00 46.14 1.90
2671 3254 6.363357 GCTCTTTTGTGGAAACATGACAATAC 59.637 38.462 0.00 0.00 46.14 1.89
2672 3255 7.340122 TCTTTTGTGGAAACATGACAATACA 57.660 32.000 0.00 0.00 46.14 2.29
2673 3256 7.424803 TCTTTTGTGGAAACATGACAATACAG 58.575 34.615 0.00 0.00 46.14 2.74
2773 3357 1.153842 CGCACTACTGTGGCGATCA 60.154 57.895 15.09 0.00 43.97 2.92
2811 3395 3.219281 TCCACCTAAGAACTGCCAAAAC 58.781 45.455 0.00 0.00 0.00 2.43
2813 3397 3.243401 CCACCTAAGAACTGCCAAAACAC 60.243 47.826 0.00 0.00 0.00 3.32
2814 3398 3.632145 CACCTAAGAACTGCCAAAACACT 59.368 43.478 0.00 0.00 0.00 3.55
2815 3399 3.883489 ACCTAAGAACTGCCAAAACACTC 59.117 43.478 0.00 0.00 0.00 3.51
2860 3445 3.708631 ACATTTTCATGTGGTGGAAACCA 59.291 39.130 0.00 0.00 42.46 3.67
2900 3485 7.660208 TGGAACATCTTTACTTTTGTAGGAGTC 59.340 37.037 0.00 0.00 36.14 3.36
3283 3878 9.163894 AGATTCATCCAACTTAGAATAGATGGA 57.836 33.333 5.30 5.30 46.88 3.41
3385 3981 6.185399 GCTAATATGACACAATCACACGAAC 58.815 40.000 0.00 0.00 41.24 3.95
3655 4251 3.568430 ACACTTGGTTTCCCTTCGATTTC 59.432 43.478 0.00 0.00 0.00 2.17
3763 4359 9.632807 TTTTACTAATGAAATGGAAATTGTCGG 57.367 29.630 0.00 0.00 0.00 4.79
3982 4578 1.276138 CCATTTGCAGGGGAAGTTTCC 59.724 52.381 2.17 2.17 46.82 3.13
4092 4688 2.658285 TGAAGCCATATTGGAGCTTGG 58.342 47.619 0.51 0.00 46.44 3.61
4105 4701 4.317488 TGGAGCTTGGCAAATTGAATTTC 58.683 39.130 0.00 0.00 0.00 2.17
4208 4807 9.520515 TTAATCTAGGTTGCTCTTCATTTTTCT 57.479 29.630 0.00 0.00 0.00 2.52
4211 4810 9.692325 ATCTAGGTTGCTCTTCATTTTTCTAAT 57.308 29.630 0.00 0.00 0.00 1.73
4366 4969 8.622948 ACCTTGAATATTCTTATTCCCGAATC 57.377 34.615 16.24 0.00 42.02 2.52
4581 5433 8.925161 TTGTTTTCTATCAAAGAACAAAGTGG 57.075 30.769 0.00 0.00 44.02 4.00
4585 5437 6.707440 TCTATCAAAGAACAAAGTGGCAAA 57.293 33.333 0.00 0.00 0.00 3.68
4701 5554 6.880484 TGCATTAAGAGGAATTCATTGCATT 58.120 32.000 11.26 0.67 0.00 3.56
4702 5555 8.009622 TGCATTAAGAGGAATTCATTGCATTA 57.990 30.769 11.26 0.00 0.00 1.90
4703 5556 8.476447 TGCATTAAGAGGAATTCATTGCATTAA 58.524 29.630 11.26 7.44 31.53 1.40
4704 5557 9.485206 GCATTAAGAGGAATTCATTGCATTAAT 57.515 29.630 7.93 7.51 35.14 1.40
5063 5937 9.108284 TGTGTCATATGTGAAAGTACCATTATG 57.892 33.333 1.90 0.00 35.80 1.90
5127 6002 8.423349 ACAAATTGATTGGAATCTGAAGTTTCA 58.577 29.630 0.00 0.00 43.66 2.69
5186 6066 7.886629 ATAAGCATTATGTTCTGACATGGTT 57.113 32.000 0.00 0.00 45.80 3.67
5201 6081 0.535553 TGGTTAAACGCAGGTGGGAC 60.536 55.000 0.37 0.00 0.00 4.46
5382 6262 5.668558 ACAAAGTTGGTCGTGTAGAAATC 57.331 39.130 0.00 0.00 0.00 2.17
5383 6263 5.120399 ACAAAGTTGGTCGTGTAGAAATCA 58.880 37.500 0.00 0.00 0.00 2.57
5435 6317 7.404671 TTTTTAAATATCTCCCAGTTGAGCC 57.595 36.000 0.00 0.00 32.22 4.70
5438 6320 2.856760 TATCTCCCAGTTGAGCCTCT 57.143 50.000 0.00 0.00 32.22 3.69
5439 6321 1.963985 ATCTCCCAGTTGAGCCTCTT 58.036 50.000 0.00 0.00 32.22 2.85
5446 6328 2.224378 CCAGTTGAGCCTCTTCAAGACA 60.224 50.000 0.00 0.00 37.72 3.41
5458 6340 5.006165 CCTCTTCAAGACAGAATAACATCGC 59.994 44.000 0.00 0.00 0.00 4.58
5607 6523 3.575256 ACAATGTGTAGGACTACGTTGGA 59.425 43.478 17.96 0.00 44.22 3.53
5671 6587 7.138054 AGGGGTGGTTATAAATAGTCTTCAG 57.862 40.000 0.00 0.00 0.00 3.02
5781 6702 6.066690 AGCATACATGGCAATCTCATAAAGT 58.933 36.000 0.00 0.00 0.00 2.66
5796 6717 5.801380 TCATAAAGTCCCTCACCACTAAAC 58.199 41.667 0.00 0.00 0.00 2.01
5876 6798 0.326595 TGCTGAAATTCTGGCCCGTA 59.673 50.000 0.00 0.00 0.00 4.02
5984 7212 6.425721 TGTTTCCACTAAAGTATTTGACTCGG 59.574 38.462 0.00 0.00 39.63 4.63
6217 7452 9.308000 TGGGATTTTATAATCAACAACTCTTGT 57.692 29.630 7.99 0.00 41.62 3.16
6256 7491 3.387374 TCATTTGGCAATTGTCAGTTGGT 59.613 39.130 13.27 0.00 0.00 3.67
6267 7502 6.707440 ATTGTCAGTTGGTGTTTAACATGA 57.293 33.333 0.00 0.00 0.00 3.07
6345 7603 5.355350 CAGTCCTCAATGTCAATTTAGGGAC 59.645 44.000 0.00 0.00 37.64 4.46
6358 7631 3.906720 TTAGGGACCTACATGCACTTC 57.093 47.619 0.00 0.00 0.00 3.01
6397 7670 7.600960 AGTTGAACCTAGCTAGTTTGTAGTAC 58.399 38.462 19.31 8.68 0.00 2.73
6459 7741 4.335594 CCTCCAATTGAAAATAGACCGGAC 59.664 45.833 9.46 0.10 0.00 4.79
6511 7793 1.993370 GTCGGTGACTCAACTACATGC 59.007 52.381 0.00 0.00 0.00 4.06
6702 10026 7.233348 TGAACTTTCCATGAAAAGCCTTATTCT 59.767 33.333 4.07 0.00 39.39 2.40
6827 10151 7.015289 CGATACAAGAAACACGAATTCACATT 58.985 34.615 6.22 0.00 0.00 2.71
6838 10162 1.825090 ATTCACATTCGGCTTCTGCA 58.175 45.000 0.00 0.00 41.91 4.41
6885 10209 1.276705 ACCACACACACACACACACTA 59.723 47.619 0.00 0.00 0.00 2.74
6917 10265 3.219981 CACGCAAAATGCTTGCAAAATC 58.780 40.909 0.00 0.00 45.14 2.17
7745 11107 4.035684 CGATGATTGTAGGACGTACACAG 58.964 47.826 7.49 0.00 41.58 3.66
7770 11133 3.071747 TGAATAGGGGCGCATAACATGTA 59.928 43.478 10.83 0.00 0.00 2.29
7847 11210 2.667473 AGTGTCGTTGGCCTATGTAC 57.333 50.000 3.32 6.39 0.00 2.90
7902 11265 2.465813 AGGAACATGAGGAGAGACTGG 58.534 52.381 0.00 0.00 0.00 4.00
7968 11363 1.318576 CGAACAATAAGGCCATCCCC 58.681 55.000 5.01 0.00 0.00 4.81
7979 11374 0.472471 GCCATCCCCGAGATTAACCA 59.528 55.000 0.00 0.00 30.59 3.67
7985 11380 4.577988 TCCCCGAGATTAACCAAATGAA 57.422 40.909 0.00 0.00 0.00 2.57
7986 11381 5.124036 TCCCCGAGATTAACCAAATGAAT 57.876 39.130 0.00 0.00 0.00 2.57
7987 11382 4.887071 TCCCCGAGATTAACCAAATGAATG 59.113 41.667 0.00 0.00 0.00 2.67
7991 11388 6.238648 CCCGAGATTAACCAAATGAATGTACC 60.239 42.308 0.00 0.00 0.00 3.34
8279 11728 9.703892 GATGCATACACTAATTCAGAGATACTT 57.296 33.333 0.00 0.00 0.00 2.24
8313 11762 1.403780 GGATGCTTTTTGCTGAGCCAG 60.404 52.381 0.23 0.00 43.37 4.85
8328 11777 5.047021 GCTGAGCCAGTGGAATAGATATACA 60.047 44.000 15.20 0.00 33.43 2.29
8334 11783 6.350612 GCCAGTGGAATAGATATACAGGTCTC 60.351 46.154 15.20 0.00 0.00 3.36
8358 11807 1.299541 CCACAAGGGATGCATACGTC 58.700 55.000 4.22 0.00 40.01 4.34
8383 11832 1.348064 TGGTCATCGGAAGTGGTCTT 58.652 50.000 0.00 0.00 36.51 3.01
8599 12049 4.129380 TCATTCATTTGCTCATCTACGGG 58.871 43.478 0.00 0.00 0.00 5.28
8609 12059 1.068083 ATCTACGGGCATGCACTCG 59.932 57.895 19.64 20.08 0.00 4.18
8634 12084 4.251268 GACCATGCTAACCTAGACGTTTT 58.749 43.478 0.00 0.00 0.00 2.43
8662 12112 4.102367 TGCACATGGTATAATGCACTAGGA 59.898 41.667 2.55 0.00 42.92 2.94
8782 12232 5.386958 AGCAATTGACATGGATATGATGC 57.613 39.130 10.34 0.00 37.73 3.91
8901 12353 7.967890 AACTTAAAGGGAAAATGCTCAATTG 57.032 32.000 0.00 0.00 0.00 2.32
8945 12397 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
8946 12398 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
8947 12399 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
8948 12400 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
8949 12401 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
8950 12402 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
8951 12403 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
8952 12404 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
8953 12405 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
8954 12406 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
8955 12407 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
8956 12408 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
8957 12409 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
8958 12410 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
8979 12431 2.952310 GAGAGAGAGAGAGAGAAAGGCC 59.048 54.545 0.00 0.00 0.00 5.19
9013 12465 9.256228 TCTTAGCTAAGAGAAAGATGGTCTTTA 57.744 33.333 28.47 4.06 40.51 1.85
9039 12491 0.324943 AGACAAGGCAGCCGTTGTAT 59.675 50.000 22.08 18.34 46.58 2.29
9171 12623 1.135373 TCGGCTTCTCTCAATGACGTC 60.135 52.381 9.11 9.11 0.00 4.34
9191 12643 7.658167 TGACGTCAAATACATAGGAGAAAAACA 59.342 33.333 17.62 0.00 0.00 2.83
9202 12654 5.485209 AGGAGAAAAACACCTTATCGACT 57.515 39.130 0.00 0.00 36.18 4.18
9214 12666 4.100963 ACCTTATCGACTATTGACATGCCA 59.899 41.667 0.00 0.00 0.00 4.92
9238 12690 8.402472 CCATAAGCATCATTTTCCGTAAGTTAA 58.598 33.333 0.00 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 5.862924 ATTACTTGTCACTCAAACGGATG 57.137 39.130 0.00 0.00 35.48 3.51
12 13 5.872617 TCCATATTACTTGTCACTCAAACGG 59.127 40.000 0.00 0.00 35.48 4.44
14 15 7.254455 CCGATCCATATTACTTGTCACTCAAAC 60.254 40.741 0.00 0.00 35.48 2.93
21 22 5.600898 TCCTTCCGATCCATATTACTTGTCA 59.399 40.000 0.00 0.00 0.00 3.58
55 56 3.192844 ACCACTGTCGTTATGTCTACCTG 59.807 47.826 0.00 0.00 0.00 4.00
61 62 6.759827 ACCATATAAACCACTGTCGTTATGTC 59.240 38.462 0.00 0.00 0.00 3.06
68 69 3.734231 CGCTACCATATAAACCACTGTCG 59.266 47.826 0.00 0.00 0.00 4.35
74 75 8.788806 CCATTAAATTCGCTACCATATAAACCA 58.211 33.333 0.00 0.00 0.00 3.67
78 79 7.463431 ACCCCATTAAATTCGCTACCATATAA 58.537 34.615 0.00 0.00 0.00 0.98
167 168 4.196193 TCTCCAACAAAGTCATGACGTTT 58.804 39.130 22.17 17.53 36.20 3.60
171 172 5.702670 TCTTCATCTCCAACAAAGTCATGAC 59.297 40.000 18.47 18.47 0.00 3.06
200 201 5.121454 GGAGCTGTTAGACATTTCTCTTGTG 59.879 44.000 0.00 0.00 32.75 3.33
201 202 5.241662 GGAGCTGTTAGACATTTCTCTTGT 58.758 41.667 0.00 0.00 32.75 3.16
202 203 4.633565 GGGAGCTGTTAGACATTTCTCTTG 59.366 45.833 0.00 0.00 32.75 3.02
203 204 4.287067 TGGGAGCTGTTAGACATTTCTCTT 59.713 41.667 0.00 0.00 32.75 2.85
204 205 3.840666 TGGGAGCTGTTAGACATTTCTCT 59.159 43.478 0.00 0.00 32.75 3.10
205 206 4.187694 CTGGGAGCTGTTAGACATTTCTC 58.812 47.826 0.00 0.00 32.75 2.87
206 207 3.054802 CCTGGGAGCTGTTAGACATTTCT 60.055 47.826 0.00 0.00 35.66 2.52
207 208 3.274288 CCTGGGAGCTGTTAGACATTTC 58.726 50.000 0.00 0.00 0.00 2.17
208 209 2.644798 ACCTGGGAGCTGTTAGACATTT 59.355 45.455 0.00 0.00 0.00 2.32
209 210 2.026822 CACCTGGGAGCTGTTAGACATT 60.027 50.000 0.00 0.00 0.00 2.71
210 211 1.556911 CACCTGGGAGCTGTTAGACAT 59.443 52.381 0.00 0.00 0.00 3.06
211 212 0.976641 CACCTGGGAGCTGTTAGACA 59.023 55.000 0.00 0.00 0.00 3.41
212 213 0.391793 GCACCTGGGAGCTGTTAGAC 60.392 60.000 0.00 0.00 0.00 2.59
213 214 1.553690 GGCACCTGGGAGCTGTTAGA 61.554 60.000 12.19 0.00 32.43 2.10
214 215 1.078143 GGCACCTGGGAGCTGTTAG 60.078 63.158 12.19 0.00 32.43 2.34
228 229 1.224592 CATGAGGGTGTAGGGGCAC 59.775 63.158 0.00 0.00 38.56 5.01
229 230 0.548926 TTCATGAGGGTGTAGGGGCA 60.549 55.000 0.00 0.00 0.00 5.36
230 231 0.107165 GTTCATGAGGGTGTAGGGGC 60.107 60.000 0.00 0.00 0.00 5.80
231 232 1.210478 CTGTTCATGAGGGTGTAGGGG 59.790 57.143 0.00 0.00 0.00 4.79
232 233 1.909302 ACTGTTCATGAGGGTGTAGGG 59.091 52.381 0.00 0.00 0.00 3.53
233 234 4.819105 TTACTGTTCATGAGGGTGTAGG 57.181 45.455 0.00 0.00 0.00 3.18
234 235 6.878923 TGAATTTACTGTTCATGAGGGTGTAG 59.121 38.462 0.00 0.00 31.07 2.74
235 236 6.774673 TGAATTTACTGTTCATGAGGGTGTA 58.225 36.000 0.00 0.00 31.07 2.90
236 237 5.630121 TGAATTTACTGTTCATGAGGGTGT 58.370 37.500 0.00 0.00 31.07 4.16
237 238 6.764308 ATGAATTTACTGTTCATGAGGGTG 57.236 37.500 0.00 0.00 42.87 4.61
290 291 8.884124 ATAATCTTTGATCCCTGAAAGTTTCA 57.116 30.769 17.16 17.16 38.17 2.69
291 292 8.960591 TGATAATCTTTGATCCCTGAAAGTTTC 58.039 33.333 8.75 8.75 32.11 2.78
292 293 8.884124 TGATAATCTTTGATCCCTGAAAGTTT 57.116 30.769 3.88 0.00 32.11 2.66
293 294 8.884124 TTGATAATCTTTGATCCCTGAAAGTT 57.116 30.769 3.88 1.94 32.11 2.66
294 295 8.884124 TTTGATAATCTTTGATCCCTGAAAGT 57.116 30.769 3.88 0.00 32.11 2.66
295 296 8.411683 CCTTTGATAATCTTTGATCCCTGAAAG 58.588 37.037 0.00 0.00 0.00 2.62
296 297 7.895429 ACCTTTGATAATCTTTGATCCCTGAAA 59.105 33.333 0.00 0.00 0.00 2.69
297 298 7.413446 ACCTTTGATAATCTTTGATCCCTGAA 58.587 34.615 0.00 0.00 0.00 3.02
298 299 6.973642 ACCTTTGATAATCTTTGATCCCTGA 58.026 36.000 0.00 0.00 0.00 3.86
299 300 7.651027 AACCTTTGATAATCTTTGATCCCTG 57.349 36.000 0.00 0.00 0.00 4.45
300 301 7.895429 TCAAACCTTTGATAATCTTTGATCCCT 59.105 33.333 0.00 0.00 41.88 4.20
301 302 8.066612 TCAAACCTTTGATAATCTTTGATCCC 57.933 34.615 0.00 0.00 41.88 3.85
316 317 5.524646 ACTTTGCATGAACATCAAACCTTTG 59.475 36.000 0.00 0.00 39.48 2.77
317 318 5.673514 ACTTTGCATGAACATCAAACCTTT 58.326 33.333 0.00 0.00 0.00 3.11
318 319 5.280654 ACTTTGCATGAACATCAAACCTT 57.719 34.783 0.00 0.00 0.00 3.50
319 320 4.942761 ACTTTGCATGAACATCAAACCT 57.057 36.364 0.00 0.00 0.00 3.50
320 321 5.989551 AAACTTTGCATGAACATCAAACC 57.010 34.783 0.00 0.00 0.00 3.27
321 322 8.351495 TCTAAAACTTTGCATGAACATCAAAC 57.649 30.769 0.00 0.00 0.00 2.93
322 323 8.939201 TTCTAAAACTTTGCATGAACATCAAA 57.061 26.923 0.00 0.00 0.00 2.69
323 324 8.816144 GTTTCTAAAACTTTGCATGAACATCAA 58.184 29.630 0.00 0.00 0.00 2.57
324 325 7.978414 TGTTTCTAAAACTTTGCATGAACATCA 59.022 29.630 0.00 0.00 0.00 3.07
325 326 8.351495 TGTTTCTAAAACTTTGCATGAACATC 57.649 30.769 0.00 0.00 0.00 3.06
326 327 8.715191 TTGTTTCTAAAACTTTGCATGAACAT 57.285 26.923 0.00 0.00 0.00 2.71
327 328 8.539770 TTTGTTTCTAAAACTTTGCATGAACA 57.460 26.923 0.00 0.00 0.00 3.18
331 332 9.862585 GGTTATTTGTTTCTAAAACTTTGCATG 57.137 29.630 4.40 0.00 0.00 4.06
332 333 9.830975 AGGTTATTTGTTTCTAAAACTTTGCAT 57.169 25.926 4.40 0.00 0.00 3.96
333 334 9.660180 AAGGTTATTTGTTTCTAAAACTTTGCA 57.340 25.926 4.40 0.00 0.00 4.08
337 338 9.511144 CACGAAGGTTATTTGTTTCTAAAACTT 57.489 29.630 4.40 0.00 0.00 2.66
338 339 8.895737 TCACGAAGGTTATTTGTTTCTAAAACT 58.104 29.630 4.40 0.00 0.00 2.66
339 340 9.505995 TTCACGAAGGTTATTTGTTTCTAAAAC 57.494 29.630 0.00 0.00 0.00 2.43
340 341 9.724839 CTTCACGAAGGTTATTTGTTTCTAAAA 57.275 29.630 0.00 0.00 34.87 1.52
341 342 7.858879 GCTTCACGAAGGTTATTTGTTTCTAAA 59.141 33.333 8.78 0.00 38.80 1.85
342 343 7.357303 GCTTCACGAAGGTTATTTGTTTCTAA 58.643 34.615 8.78 0.00 38.80 2.10
343 344 6.072893 GGCTTCACGAAGGTTATTTGTTTCTA 60.073 38.462 8.78 0.00 38.80 2.10
344 345 5.278315 GGCTTCACGAAGGTTATTTGTTTCT 60.278 40.000 8.78 0.00 38.80 2.52
345 346 4.915667 GGCTTCACGAAGGTTATTTGTTTC 59.084 41.667 8.78 0.00 38.80 2.78
346 347 4.261867 GGGCTTCACGAAGGTTATTTGTTT 60.262 41.667 8.78 0.00 38.80 2.83
347 348 3.254903 GGGCTTCACGAAGGTTATTTGTT 59.745 43.478 8.78 0.00 38.80 2.83
348 349 2.817844 GGGCTTCACGAAGGTTATTTGT 59.182 45.455 8.78 0.00 38.80 2.83
349 350 3.081804 AGGGCTTCACGAAGGTTATTTG 58.918 45.455 8.78 0.00 38.80 2.32
350 351 3.244770 TGAGGGCTTCACGAAGGTTATTT 60.245 43.478 8.78 0.00 38.80 1.40
351 352 2.304761 TGAGGGCTTCACGAAGGTTATT 59.695 45.455 8.78 0.00 38.80 1.40
352 353 1.906574 TGAGGGCTTCACGAAGGTTAT 59.093 47.619 8.78 0.00 38.80 1.89
353 354 1.001633 GTGAGGGCTTCACGAAGGTTA 59.998 52.381 14.25 0.00 46.13 2.85
354 355 0.250338 GTGAGGGCTTCACGAAGGTT 60.250 55.000 14.25 0.00 46.13 3.50
355 356 1.371558 GTGAGGGCTTCACGAAGGT 59.628 57.895 14.25 0.00 46.13 3.50
356 357 4.285851 GTGAGGGCTTCACGAAGG 57.714 61.111 14.25 0.00 46.13 3.46
362 363 3.935371 TTTTTGGGTGAGGGCTTCA 57.065 47.368 0.00 0.00 0.00 3.02
378 379 8.513774 ACATTTTTGAGCAGTGATTTTGTTTTT 58.486 25.926 0.00 0.00 0.00 1.94
379 380 8.042944 ACATTTTTGAGCAGTGATTTTGTTTT 57.957 26.923 0.00 0.00 0.00 2.43
380 381 7.614124 ACATTTTTGAGCAGTGATTTTGTTT 57.386 28.000 0.00 0.00 0.00 2.83
381 382 7.763528 TGTACATTTTTGAGCAGTGATTTTGTT 59.236 29.630 0.00 0.00 0.00 2.83
382 383 7.264221 TGTACATTTTTGAGCAGTGATTTTGT 58.736 30.769 0.00 0.00 0.00 2.83
383 384 7.697352 TGTACATTTTTGAGCAGTGATTTTG 57.303 32.000 0.00 0.00 0.00 2.44
384 385 9.979578 TTATGTACATTTTTGAGCAGTGATTTT 57.020 25.926 14.77 0.00 0.00 1.82
385 386 9.979578 TTTATGTACATTTTTGAGCAGTGATTT 57.020 25.926 14.77 0.00 0.00 2.17
386 387 9.410556 GTTTATGTACATTTTTGAGCAGTGATT 57.589 29.630 14.77 0.00 0.00 2.57
387 388 8.796475 AGTTTATGTACATTTTTGAGCAGTGAT 58.204 29.630 14.77 0.00 0.00 3.06
388 389 8.165239 AGTTTATGTACATTTTTGAGCAGTGA 57.835 30.769 14.77 0.00 0.00 3.41
389 390 8.801715 AAGTTTATGTACATTTTTGAGCAGTG 57.198 30.769 14.77 0.00 0.00 3.66
390 391 9.248291 CAAAGTTTATGTACATTTTTGAGCAGT 57.752 29.630 14.77 0.00 0.00 4.40
391 392 9.462174 TCAAAGTTTATGTACATTTTTGAGCAG 57.538 29.630 14.77 0.00 31.64 4.24
392 393 9.809096 TTCAAAGTTTATGTACATTTTTGAGCA 57.191 25.926 14.77 8.68 35.35 4.26
432 433 7.648142 ACATTCGAAGAGCACTCAAATAAAAA 58.352 30.769 3.35 0.00 38.43 1.94
433 434 7.202016 ACATTCGAAGAGCACTCAAATAAAA 57.798 32.000 3.35 0.00 38.43 1.52
434 435 6.801539 ACATTCGAAGAGCACTCAAATAAA 57.198 33.333 3.35 0.00 38.43 1.40
435 436 6.801539 AACATTCGAAGAGCACTCAAATAA 57.198 33.333 3.35 0.00 38.43 1.40
436 437 8.492673 AATAACATTCGAAGAGCACTCAAATA 57.507 30.769 3.35 0.00 38.43 1.40
437 438 6.992063 ATAACATTCGAAGAGCACTCAAAT 57.008 33.333 3.35 0.00 38.43 2.32
438 439 6.801539 AATAACATTCGAAGAGCACTCAAA 57.198 33.333 3.35 0.00 38.43 2.69
439 440 6.801539 AAATAACATTCGAAGAGCACTCAA 57.198 33.333 3.35 0.00 38.43 3.02
440 441 6.801539 AAAATAACATTCGAAGAGCACTCA 57.198 33.333 3.35 0.00 38.43 3.41
441 442 7.426743 GCTAAAAATAACATTCGAAGAGCACTC 59.573 37.037 3.35 0.00 38.43 3.51
442 443 7.119846 AGCTAAAAATAACATTCGAAGAGCACT 59.880 33.333 3.35 0.00 38.43 4.40
443 444 7.244192 AGCTAAAAATAACATTCGAAGAGCAC 58.756 34.615 3.35 0.00 38.43 4.40
444 445 7.377766 AGCTAAAAATAACATTCGAAGAGCA 57.622 32.000 3.35 0.00 38.43 4.26
445 446 9.769093 TTTAGCTAAAAATAACATTCGAAGAGC 57.231 29.630 16.53 0.03 38.43 4.09
459 460 9.762933 TGATCTTGCAAAGTTTTAGCTAAAAAT 57.237 25.926 28.54 25.54 46.34 1.82
460 461 9.762933 ATGATCTTGCAAAGTTTTAGCTAAAAA 57.237 25.926 28.54 12.79 46.34 1.94
461 462 9.410556 GATGATCTTGCAAAGTTTTAGCTAAAA 57.589 29.630 24.42 24.42 46.34 1.52
462 463 8.575589 TGATGATCTTGCAAAGTTTTAGCTAAA 58.424 29.630 14.96 14.96 46.34 1.85
463 464 8.109705 TGATGATCTTGCAAAGTTTTAGCTAA 57.890 30.769 0.86 0.86 46.34 3.09
464 465 7.686438 TGATGATCTTGCAAAGTTTTAGCTA 57.314 32.000 0.00 0.00 46.34 3.32
465 466 6.579666 TGATGATCTTGCAAAGTTTTAGCT 57.420 33.333 0.00 0.00 46.34 3.32
466 467 7.642071 TTTGATGATCTTGCAAAGTTTTAGC 57.358 32.000 0.00 0.00 46.34 3.09
467 468 9.252962 ACTTTTGATGATCTTGCAAAGTTTTAG 57.747 29.630 0.00 0.00 46.34 1.85
468 469 9.598517 AACTTTTGATGATCTTGCAAAGTTTTA 57.401 25.926 15.31 0.00 46.34 1.52
469 470 8.496707 AACTTTTGATGATCTTGCAAAGTTTT 57.503 26.923 15.31 6.88 46.34 2.43
470 471 8.496707 AAACTTTTGATGATCTTGCAAAGTTT 57.503 26.923 21.05 21.05 46.34 2.66
471 472 7.765360 TGAAACTTTTGATGATCTTGCAAAGTT 59.235 29.630 15.31 15.31 46.34 2.66
472 473 7.267128 TGAAACTTTTGATGATCTTGCAAAGT 58.733 30.769 0.00 2.14 46.34 2.66
473 474 8.221100 CATGAAACTTTTGATGATCTTGCAAAG 58.779 33.333 0.00 1.54 38.40 2.77
474 475 7.927092 TCATGAAACTTTTGATGATCTTGCAAA 59.073 29.630 0.00 0.00 36.18 3.68
475 476 7.435305 TCATGAAACTTTTGATGATCTTGCAA 58.565 30.769 0.00 0.00 36.18 4.08
476 477 6.983984 TCATGAAACTTTTGATGATCTTGCA 58.016 32.000 0.00 0.00 36.18 4.08
477 478 7.544566 ACATCATGAAACTTTTGATGATCTTGC 59.455 33.333 17.52 0.00 44.48 4.01
478 479 8.981724 ACATCATGAAACTTTTGATGATCTTG 57.018 30.769 17.52 7.39 44.48 3.02
479 480 9.635520 GAACATCATGAAACTTTTGATGATCTT 57.364 29.630 17.52 8.42 44.48 2.40
480 481 7.966753 CGAACATCATGAAACTTTTGATGATCT 59.033 33.333 17.52 4.92 44.48 2.75
481 482 7.964559 TCGAACATCATGAAACTTTTGATGATC 59.035 33.333 17.52 14.77 44.48 2.92
483 484 7.200778 TCGAACATCATGAAACTTTTGATGA 57.799 32.000 17.52 11.56 46.16 2.92
485 486 7.596494 ACATCGAACATCATGAAACTTTTGAT 58.404 30.769 0.00 3.06 0.00 2.57
486 487 6.969366 ACATCGAACATCATGAAACTTTTGA 58.031 32.000 0.00 0.71 0.00 2.69
487 488 6.306356 GGACATCGAACATCATGAAACTTTTG 59.694 38.462 0.00 0.00 0.00 2.44
488 489 6.381801 GGACATCGAACATCATGAAACTTTT 58.618 36.000 0.00 0.00 0.00 2.27
489 490 5.106157 GGGACATCGAACATCATGAAACTTT 60.106 40.000 0.00 0.00 0.00 2.66
490 491 4.396166 GGGACATCGAACATCATGAAACTT 59.604 41.667 0.00 0.00 0.00 2.66
491 492 3.941483 GGGACATCGAACATCATGAAACT 59.059 43.478 0.00 0.00 0.00 2.66
492 493 3.689161 TGGGACATCGAACATCATGAAAC 59.311 43.478 0.00 0.00 0.00 2.78
493 494 3.949132 TGGGACATCGAACATCATGAAA 58.051 40.909 0.00 0.00 0.00 2.69
494 495 3.625649 TGGGACATCGAACATCATGAA 57.374 42.857 0.00 0.00 0.00 2.57
495 496 3.625649 TTGGGACATCGAACATCATGA 57.374 42.857 0.00 0.00 39.30 3.07
496 497 3.691118 ACTTTGGGACATCGAACATCATG 59.309 43.478 0.00 0.00 39.30 3.07
497 498 3.955471 ACTTTGGGACATCGAACATCAT 58.045 40.909 0.00 0.00 39.30 2.45
498 499 3.417069 ACTTTGGGACATCGAACATCA 57.583 42.857 0.00 0.00 39.30 3.07
499 500 4.215399 TGAAACTTTGGGACATCGAACATC 59.785 41.667 0.00 0.00 39.30 3.06
500 501 4.141287 TGAAACTTTGGGACATCGAACAT 58.859 39.130 0.00 0.00 39.30 2.71
501 502 3.546724 TGAAACTTTGGGACATCGAACA 58.453 40.909 0.00 0.00 39.30 3.18
502 503 3.813166 TCTGAAACTTTGGGACATCGAAC 59.187 43.478 0.00 0.00 39.30 3.95
503 504 4.079980 TCTGAAACTTTGGGACATCGAA 57.920 40.909 0.00 0.00 39.30 3.71
504 505 3.762407 TCTGAAACTTTGGGACATCGA 57.238 42.857 0.00 0.00 39.30 3.59
505 506 5.376854 AAATCTGAAACTTTGGGACATCG 57.623 39.130 0.00 0.00 39.30 3.84
536 537 8.792633 CCCTCTATGAACAGTAAATTCAAAACA 58.207 33.333 0.00 0.00 39.43 2.83
537 538 8.793592 ACCCTCTATGAACAGTAAATTCAAAAC 58.206 33.333 0.00 0.00 39.43 2.43
538 539 8.792633 CACCCTCTATGAACAGTAAATTCAAAA 58.207 33.333 0.00 0.00 39.43 2.44
539 540 7.942341 ACACCCTCTATGAACAGTAAATTCAAA 59.058 33.333 0.00 0.00 39.43 2.69
540 541 7.458397 ACACCCTCTATGAACAGTAAATTCAA 58.542 34.615 0.00 0.00 39.43 2.69
541 542 7.016153 ACACCCTCTATGAACAGTAAATTCA 57.984 36.000 0.00 0.00 40.25 2.57
542 543 7.711339 CCTACACCCTCTATGAACAGTAAATTC 59.289 40.741 0.00 0.00 0.00 2.17
543 544 7.365652 CCCTACACCCTCTATGAACAGTAAATT 60.366 40.741 0.00 0.00 0.00 1.82
544 545 6.099845 CCCTACACCCTCTATGAACAGTAAAT 59.900 42.308 0.00 0.00 0.00 1.40
545 546 5.424252 CCCTACACCCTCTATGAACAGTAAA 59.576 44.000 0.00 0.00 0.00 2.01
546 547 4.960469 CCCTACACCCTCTATGAACAGTAA 59.040 45.833 0.00 0.00 0.00 2.24
547 548 4.543689 CCCTACACCCTCTATGAACAGTA 58.456 47.826 0.00 0.00 0.00 2.74
548 549 3.375699 CCCTACACCCTCTATGAACAGT 58.624 50.000 0.00 0.00 0.00 3.55
549 550 2.700897 CCCCTACACCCTCTATGAACAG 59.299 54.545 0.00 0.00 0.00 3.16
550 551 2.759355 CCCCTACACCCTCTATGAACA 58.241 52.381 0.00 0.00 0.00 3.18
551 552 1.416772 GCCCCTACACCCTCTATGAAC 59.583 57.143 0.00 0.00 0.00 3.18
552 553 1.009060 TGCCCCTACACCCTCTATGAA 59.991 52.381 0.00 0.00 0.00 2.57
553 554 0.639943 TGCCCCTACACCCTCTATGA 59.360 55.000 0.00 0.00 0.00 2.15
554 555 0.759346 GTGCCCCTACACCCTCTATG 59.241 60.000 0.00 0.00 34.35 2.23
555 556 3.242355 GTGCCCCTACACCCTCTAT 57.758 57.895 0.00 0.00 34.35 1.98
556 557 4.800764 GTGCCCCTACACCCTCTA 57.199 61.111 0.00 0.00 34.35 2.43
572 573 1.304134 GGATTTTCAGCACCCGGGT 60.304 57.895 24.16 24.16 0.00 5.28
573 574 0.254747 TAGGATTTTCAGCACCCGGG 59.745 55.000 22.25 22.25 0.00 5.73
574 575 2.158755 AGATAGGATTTTCAGCACCCGG 60.159 50.000 0.00 0.00 0.00 5.73
575 576 3.134458 GAGATAGGATTTTCAGCACCCG 58.866 50.000 0.00 0.00 0.00 5.28
576 577 4.429854 AGAGATAGGATTTTCAGCACCC 57.570 45.455 0.00 0.00 0.00 4.61
577 578 5.298026 GGAAAGAGATAGGATTTTCAGCACC 59.702 44.000 0.00 0.00 32.57 5.01
578 579 5.882557 TGGAAAGAGATAGGATTTTCAGCAC 59.117 40.000 0.00 0.00 32.57 4.40
579 580 5.882557 GTGGAAAGAGATAGGATTTTCAGCA 59.117 40.000 0.00 0.00 32.57 4.41
580 581 5.882557 TGTGGAAAGAGATAGGATTTTCAGC 59.117 40.000 0.00 0.00 32.57 4.26
581 582 7.928307 TTGTGGAAAGAGATAGGATTTTCAG 57.072 36.000 0.00 0.00 32.57 3.02
582 583 8.742777 CATTTGTGGAAAGAGATAGGATTTTCA 58.257 33.333 0.00 0.00 32.57 2.69
583 584 8.743714 ACATTTGTGGAAAGAGATAGGATTTTC 58.256 33.333 0.00 0.00 0.00 2.29
584 585 8.655935 ACATTTGTGGAAAGAGATAGGATTTT 57.344 30.769 0.00 0.00 0.00 1.82
585 586 9.927081 ATACATTTGTGGAAAGAGATAGGATTT 57.073 29.630 0.00 0.00 0.00 2.17
586 587 9.566432 GATACATTTGTGGAAAGAGATAGGATT 57.434 33.333 0.00 0.00 0.00 3.01
587 588 8.717717 TGATACATTTGTGGAAAGAGATAGGAT 58.282 33.333 0.00 0.00 0.00 3.24
588 589 8.089625 TGATACATTTGTGGAAAGAGATAGGA 57.910 34.615 0.00 0.00 0.00 2.94
589 590 8.915057 ATGATACATTTGTGGAAAGAGATAGG 57.085 34.615 0.00 0.00 0.00 2.57
592 593 9.293404 CCATATGATACATTTGTGGAAAGAGAT 57.707 33.333 3.65 0.00 0.00 2.75
593 594 7.229306 GCCATATGATACATTTGTGGAAAGAGA 59.771 37.037 3.65 0.00 0.00 3.10
594 595 7.230108 AGCCATATGATACATTTGTGGAAAGAG 59.770 37.037 3.65 0.00 0.00 2.85
595 596 7.062322 AGCCATATGATACATTTGTGGAAAGA 58.938 34.615 3.65 0.00 0.00 2.52
596 597 7.281040 AGCCATATGATACATTTGTGGAAAG 57.719 36.000 3.65 0.00 0.00 2.62
617 723 4.359706 CACTTTTGTCCACTTGTTTAGCC 58.640 43.478 0.00 0.00 0.00 3.93
634 740 0.553819 TTGTAGCCACACCCCACTTT 59.446 50.000 0.00 0.00 33.30 2.66
643 749 1.163420 CGCCACTTGTTGTAGCCACA 61.163 55.000 0.00 0.00 29.40 4.17
644 750 1.574428 CGCCACTTGTTGTAGCCAC 59.426 57.895 0.00 0.00 29.40 5.01
662 776 4.216257 CCAGTTATGGCCATACATACTTGC 59.784 45.833 25.39 8.00 40.52 4.01
774 908 9.500864 CCTGTAATCCATTTTTGTTTTGTTTTG 57.499 29.630 0.00 0.00 0.00 2.44
777 911 6.825721 TGCCTGTAATCCATTTTTGTTTTGTT 59.174 30.769 0.00 0.00 0.00 2.83
779 913 6.482973 AGTGCCTGTAATCCATTTTTGTTTTG 59.517 34.615 0.00 0.00 0.00 2.44
783 917 5.806654 AAGTGCCTGTAATCCATTTTTGT 57.193 34.783 0.00 0.00 0.00 2.83
784 918 5.807011 GCTAAGTGCCTGTAATCCATTTTTG 59.193 40.000 0.00 0.00 35.15 2.44
785 919 5.965922 GCTAAGTGCCTGTAATCCATTTTT 58.034 37.500 0.00 0.00 35.15 1.94
786 920 5.582689 GCTAAGTGCCTGTAATCCATTTT 57.417 39.130 0.00 0.00 35.15 1.82
800 934 1.809684 AAGAAGAACCGGCTAAGTGC 58.190 50.000 0.00 0.00 41.94 4.40
1014 1277 0.246086 CTTCGCCAGAGCAGTCTTCT 59.754 55.000 0.00 0.00 39.83 2.85
1118 1381 8.355169 TCTTAGACAACGTTGAAGTACAAGTAT 58.645 33.333 33.66 7.32 39.30 2.12
1150 1421 7.117379 ACTGTTTACACGGAAGCTTAAAGATAC 59.883 37.037 0.00 0.00 32.93 2.24
1183 1454 4.924305 TCTAGAAATATGTAACGGGCGT 57.076 40.909 0.00 0.00 0.00 5.68
1269 1542 6.233434 ACCCACATGTGCAGATAATACTATG 58.767 40.000 20.81 1.32 0.00 2.23
1398 1678 2.380084 ACCACTGCATACACTAACCG 57.620 50.000 0.00 0.00 0.00 4.44
1416 1696 5.940192 TGTGTCCACATCATTTGTAGAAC 57.060 39.130 0.00 0.00 36.57 3.01
1431 1711 4.284829 TGTGCTGATTATCTTGTGTCCA 57.715 40.909 0.00 0.00 0.00 4.02
1435 1715 7.543947 TCAGTTATGTGCTGATTATCTTGTG 57.456 36.000 0.00 0.00 37.98 3.33
1438 1718 9.453572 TTCTTTCAGTTATGTGCTGATTATCTT 57.546 29.630 0.00 0.00 41.87 2.40
1442 1722 7.665559 ACCTTTCTTTCAGTTATGTGCTGATTA 59.334 33.333 0.00 0.00 41.87 1.75
1545 1826 3.293311 ACTGCAGTTTGATGTTGATGC 57.707 42.857 15.25 0.00 0.00 3.91
1552 1833 5.003804 ACTTAAGGGTACTGCAGTTTGATG 58.996 41.667 27.06 10.40 0.00 3.07
1609 1890 5.913137 TGTGGTTCATGTTGAAATATCCC 57.087 39.130 0.00 0.00 38.22 3.85
1622 1903 9.077885 ACTCATTTAAGTTTGTATGTGGTTCAT 57.922 29.630 0.00 0.00 40.25 2.57
1634 1915 7.010091 GTGGGTTTGTTCACTCATTTAAGTTTG 59.990 37.037 0.00 0.00 27.08 2.93
1726 2009 9.974980 GTTTCATTATGAGGTTTCAAAAAGGTA 57.025 29.630 0.00 0.00 36.78 3.08
1780 2063 6.156748 TCTATGCCGTGCTTCTAATTCTAA 57.843 37.500 0.00 0.00 0.00 2.10
1860 2143 3.641434 ATTTCAGGCTGCACACTAGAT 57.359 42.857 10.34 0.00 0.00 1.98
1864 2147 0.963962 CCAATTTCAGGCTGCACACT 59.036 50.000 10.34 0.00 0.00 3.55
1886 2169 3.570975 ACTGCACAAGATTTGAAGCATCA 59.429 39.130 11.66 0.00 41.49 3.07
1907 2190 4.828072 AGGTGAGTCTTCCAGGAAATAC 57.172 45.455 2.72 4.86 0.00 1.89
1914 2197 5.420409 GGTATTTGTAGGTGAGTCTTCCAG 58.580 45.833 7.47 0.00 0.00 3.86
1915 2198 4.224370 GGGTATTTGTAGGTGAGTCTTCCA 59.776 45.833 7.47 0.00 0.00 3.53
1916 2199 4.224370 TGGGTATTTGTAGGTGAGTCTTCC 59.776 45.833 0.00 0.00 0.00 3.46
2044 2327 5.011227 CCTGCTTCCTTCCTATAGAGGTTAC 59.989 48.000 2.72 0.00 44.19 2.50
2054 2337 0.417841 AGGTCCCTGCTTCCTTCCTA 59.582 55.000 0.00 0.00 0.00 2.94
2055 2338 0.417841 TAGGTCCCTGCTTCCTTCCT 59.582 55.000 0.00 0.00 33.34 3.36
2056 2339 1.286248 TTAGGTCCCTGCTTCCTTCC 58.714 55.000 0.00 0.00 33.34 3.46
2057 2340 2.941860 GCTTTAGGTCCCTGCTTCCTTC 60.942 54.545 0.00 0.00 33.34 3.46
2058 2341 1.004862 GCTTTAGGTCCCTGCTTCCTT 59.995 52.381 0.00 0.00 33.34 3.36
2067 2350 2.290323 ACTGACATGTGCTTTAGGTCCC 60.290 50.000 1.15 0.00 0.00 4.46
2092 2375 3.814842 TCATAAACCAGAAGGCGCATATG 59.185 43.478 10.83 4.79 39.06 1.78
2099 2382 2.128771 TGCCTCATAAACCAGAAGGC 57.871 50.000 4.77 4.77 39.06 4.35
2113 2396 4.054780 TCCAGAAATACGTACATGCCTC 57.945 45.455 0.00 0.00 0.00 4.70
2424 2709 6.726764 ACTCACTCTCTTCCAGTTTATAAGGT 59.273 38.462 0.00 0.00 0.00 3.50
2467 2752 6.147821 GGATGTCCGATGTCGAATGATTTTAT 59.852 38.462 3.62 0.00 43.02 1.40
2495 2780 2.799412 GTCATGCAAAAATGTTTCCGCA 59.201 40.909 0.00 0.00 33.59 5.69
2497 2782 4.448395 ACATGTCATGCAAAAATGTTTCCG 59.552 37.500 12.91 0.00 0.00 4.30
2555 3133 3.305064 GCATGTGGTTGTCGTATTGGTTT 60.305 43.478 0.00 0.00 0.00 3.27
2563 3141 2.177394 TACATGCATGTGGTTGTCGT 57.823 45.000 36.72 13.48 41.89 4.34
2670 3253 1.176527 GTACAATGGTGGCATGCTGT 58.823 50.000 18.92 14.94 0.00 4.40
2671 3254 1.135315 GTGTACAATGGTGGCATGCTG 60.135 52.381 18.92 9.29 0.00 4.41
2672 3255 1.176527 GTGTACAATGGTGGCATGCT 58.823 50.000 18.92 0.00 0.00 3.79
2673 3256 0.887247 TGTGTACAATGGTGGCATGC 59.113 50.000 9.90 9.90 0.00 4.06
2743 3327 3.436704 ACAGTAGTGCGGATTTTCACATG 59.563 43.478 0.00 0.00 35.76 3.21
2750 3334 1.019278 CGCCACAGTAGTGCGGATTT 61.019 55.000 8.87 0.00 44.53 2.17
2767 3351 4.542662 ACTGCTTGTGATATTTGATCGC 57.457 40.909 0.00 0.00 0.00 4.58
2773 3357 5.079643 AGGTGGAAACTGCTTGTGATATTT 58.920 37.500 0.00 0.00 0.00 1.40
3283 3878 7.821846 CCTGATTAAGCAAAGAAGAGTAGAAGT 59.178 37.037 0.00 0.00 0.00 3.01
3385 3981 2.826674 ACCATGTGGACCCTTAATGG 57.173 50.000 5.96 9.25 42.88 3.16
3431 4027 0.109272 CATGTGAGCTTGCTGCAAGG 60.109 55.000 35.43 21.27 45.94 3.61
3684 4280 9.434275 TCAATCTATAAGGTCTTACCAGATGAA 57.566 33.333 13.15 6.29 41.95 2.57
3763 4359 6.347696 TGCAAATTTGATTGGGAATGGATAC 58.652 36.000 22.31 0.00 0.00 2.24
3982 4578 3.445987 AGGAGGTGTAAGAAGGGAAGAG 58.554 50.000 0.00 0.00 0.00 2.85
4092 4688 9.269415 GTTGCAGAATATTGAAATTCAATTTGC 57.731 29.630 23.98 23.96 44.03 3.68
4105 4701 8.980610 TCACAAAAATGAAGTTGCAGAATATTG 58.019 29.630 0.00 0.00 0.00 1.90
4366 4969 1.933853 GCGGTGACCTTTGTAGCTATG 59.066 52.381 0.00 0.00 0.00 2.23
4660 5513 3.502191 TGCAACACTTCACTTTGTTCC 57.498 42.857 0.00 0.00 33.59 3.62
4701 5554 7.774625 TGGACATCATGAGCATAGAAACAATTA 59.225 33.333 0.09 0.00 0.00 1.40
4702 5555 6.604396 TGGACATCATGAGCATAGAAACAATT 59.396 34.615 0.09 0.00 0.00 2.32
4703 5556 6.124340 TGGACATCATGAGCATAGAAACAAT 58.876 36.000 0.09 0.00 0.00 2.71
4704 5557 5.499313 TGGACATCATGAGCATAGAAACAA 58.501 37.500 0.09 0.00 0.00 2.83
4786 5640 4.742417 TGTGAAGTGAAACCATTGTTGTG 58.258 39.130 0.00 0.00 37.80 3.33
5186 6066 0.320073 CTTCGTCCCACCTGCGTTTA 60.320 55.000 0.00 0.00 0.00 2.01
5201 6081 4.337763 GAAGCACATTTACTGCATCTTCG 58.662 43.478 0.00 0.00 37.08 3.79
5354 6234 6.282167 TCTACACGACCAACTTTGTATGAAA 58.718 36.000 0.00 0.00 0.00 2.69
5435 6317 5.809562 AGCGATGTTATTCTGTCTTGAAGAG 59.190 40.000 0.00 0.00 0.00 2.85
5438 6320 5.724328 AGAGCGATGTTATTCTGTCTTGAA 58.276 37.500 0.00 0.00 0.00 2.69
5439 6321 5.330455 AGAGCGATGTTATTCTGTCTTGA 57.670 39.130 0.00 0.00 0.00 3.02
5607 6523 6.265649 AGAGGCATTACAATATACTCACTCGT 59.734 38.462 0.00 0.00 0.00 4.18
5748 6669 1.338020 GCCATGTATGCTTAAGTGCCC 59.662 52.381 4.02 0.00 0.00 5.36
5781 6702 5.895807 TCTAAGTAGTTTAGTGGTGAGGGA 58.104 41.667 0.00 0.00 39.83 4.20
5796 6717 4.894784 TCAAGTTTGGTGGCTCTAAGTAG 58.105 43.478 0.00 0.00 0.00 2.57
5876 6798 1.341531 CCTCTCGACTGTCCAAAGTGT 59.658 52.381 1.55 0.00 0.00 3.55
5984 7212 8.947115 TGGAAGCTTAAAATTTACTAGAAGCTC 58.053 33.333 17.36 13.02 46.63 4.09
6019 7247 7.722285 GGGATGCCACTACTTAACCATATTAAA 59.278 37.037 0.00 0.00 0.00 1.52
6174 7409 8.887036 AAAATCCCATTACAAAGTTTCTTGAC 57.113 30.769 0.00 0.00 0.00 3.18
6256 7491 2.566913 AGCACACGGTCATGTTAAACA 58.433 42.857 0.00 0.00 0.00 2.83
6345 7603 5.647658 TGACCTAAATTGAAGTGCATGTAGG 59.352 40.000 0.00 0.00 33.81 3.18
6358 7631 6.824305 AGGTTCAACTCATGACCTAAATTG 57.176 37.500 0.00 0.00 37.62 2.32
6397 7670 7.061673 TCCATTTCGAAGAAATAAAAACATGCG 59.938 33.333 7.57 0.00 45.90 4.73
6511 7793 8.390854 ACTACAAAATATCTACAAACGAGTCG 57.609 34.615 11.85 11.85 0.00 4.18
6684 10008 4.952335 ACCAGAGAATAAGGCTTTTCATGG 59.048 41.667 24.49 24.49 37.17 3.66
6725 10049 6.543430 TCCATTGATTACATTTTGGGGAAG 57.457 37.500 0.00 0.00 0.00 3.46
6827 10151 0.461548 CCTAGTCATGCAGAAGCCGA 59.538 55.000 0.00 0.00 41.13 5.54
6838 10162 1.687123 GGCCGTGTGTATCCTAGTCAT 59.313 52.381 0.00 0.00 0.00 3.06
6885 10209 3.184986 GCATTTTGCGTGCATTCTCTTTT 59.815 39.130 0.00 0.00 42.08 2.27
6917 10265 7.545615 GGCATTTCCTTGGTTCTTTATAACTTG 59.454 37.037 0.00 0.00 0.00 3.16
7405 10756 4.790766 GCATGCAAACTAATCATCGGAAGG 60.791 45.833 14.21 0.00 0.00 3.46
7438 10789 3.673338 TCAGATTACTTCGTCACTTTGCG 59.327 43.478 0.00 0.00 0.00 4.85
7662 11024 3.333804 TCAAAGCATGCATGAGTTACGA 58.666 40.909 30.64 17.25 0.00 3.43
7745 11107 1.607148 GTTATGCGCCCCTATTCAACC 59.393 52.381 4.18 0.00 0.00 3.77
7875 11238 4.081420 TCTCTCCTCATGTTCCTTTAGTGC 60.081 45.833 0.00 0.00 0.00 4.40
7902 11265 3.119495 AGACATTATTTGTTGCTTCCGCC 60.119 43.478 0.00 0.00 39.18 6.13
7918 11313 8.478066 GCCCCTAGATGAAATTTAAAAGACATT 58.522 33.333 0.00 0.00 0.00 2.71
7968 11363 7.315247 TGGTACATTCATTTGGTTAATCTCG 57.685 36.000 0.00 0.00 0.00 4.04
8279 11728 9.801873 GCAAAAAGCATCCTTATTGTATCTTTA 57.198 29.630 0.00 0.00 44.79 1.85
8313 11762 5.183331 TGCGAGACCTGTATATCTATTCCAC 59.817 44.000 0.00 0.00 0.00 4.02
8328 11777 1.071471 CCTTGTGGTTGCGAGACCT 59.929 57.895 8.78 0.00 40.47 3.85
8334 11783 2.568090 GCATCCCTTGTGGTTGCG 59.432 61.111 0.00 0.00 46.84 4.85
8358 11807 2.196749 CACTTCCGATGACCATCTTCG 58.803 52.381 8.20 7.04 41.76 3.79
8424 11873 6.209192 TCCTGAATAATGAGCACAACATGTTT 59.791 34.615 8.77 0.00 0.00 2.83
8557 12006 2.760634 ATGATGACCGTGTAACTGCA 57.239 45.000 0.00 0.00 31.75 4.41
8599 12049 1.811266 ATGGTCGACGAGTGCATGC 60.811 57.895 11.82 11.82 0.00 4.06
8609 12059 2.541178 CGTCTAGGTTAGCATGGTCGAC 60.541 54.545 7.13 7.13 0.00 4.20
8634 12084 4.205587 TGCATTATACCATGTGCATGACA 58.794 39.130 13.21 0.00 42.13 3.58
8901 12353 6.744112 TCTCTCTCTCTTTCTCTTGTTGAAC 58.256 40.000 0.00 0.00 0.00 3.18
8945 12397 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
8946 12398 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
8947 12399 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
8948 12400 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
8949 12401 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
8950 12402 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
8951 12403 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
8952 12404 5.860941 TTCTCTCTCTCTCTCTCTCTCTC 57.139 47.826 0.00 0.00 0.00 3.20
8953 12405 5.130145 CCTTTCTCTCTCTCTCTCTCTCTCT 59.870 48.000 0.00 0.00 0.00 3.10
8954 12406 5.363939 CCTTTCTCTCTCTCTCTCTCTCTC 58.636 50.000 0.00 0.00 0.00 3.20
8955 12407 4.384647 GCCTTTCTCTCTCTCTCTCTCTCT 60.385 50.000 0.00 0.00 0.00 3.10
8956 12408 3.879892 GCCTTTCTCTCTCTCTCTCTCTC 59.120 52.174 0.00 0.00 0.00 3.20
8957 12409 3.372025 GGCCTTTCTCTCTCTCTCTCTCT 60.372 52.174 0.00 0.00 0.00 3.10
8958 12410 2.952310 GGCCTTTCTCTCTCTCTCTCTC 59.048 54.545 0.00 0.00 0.00 3.20
8979 12431 4.966965 TCTCTTAGCTAAGACAAGACGG 57.033 45.455 28.47 18.14 37.40 4.79
9013 12465 2.890945 ACGGCTGCCTTGTCTTTTATTT 59.109 40.909 17.92 0.00 0.00 1.40
9084 12536 9.905713 TCTAGCAATTAATGTTTACAGGATCTT 57.094 29.630 0.00 0.00 0.00 2.40
9086 12538 9.547753 TCTCTAGCAATTAATGTTTACAGGATC 57.452 33.333 0.00 0.00 0.00 3.36
9149 12601 1.656095 CGTCATTGAGAGAAGCCGAAC 59.344 52.381 0.00 0.00 0.00 3.95
9191 12643 4.100963 TGGCATGTCAATAGTCGATAAGGT 59.899 41.667 0.00 0.00 0.00 3.50
9240 12692 8.573035 AGCCTTTTTCAGTTTTATCACGATAAA 58.427 29.630 7.91 7.91 40.39 1.40
9241 12693 8.106247 AGCCTTTTTCAGTTTTATCACGATAA 57.894 30.769 0.00 0.00 0.00 1.75
9243 12695 6.575162 AGCCTTTTTCAGTTTTATCACGAT 57.425 33.333 0.00 0.00 0.00 3.73
9248 12707 7.568267 GCAGTAAGCCTTTTTCAGTTTTATC 57.432 36.000 0.00 0.00 37.23 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.