Multiple sequence alignment - TraesCS3D01G086000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G086000 chr3D 100.000 2291 0 0 1 2291 43532307 43534597 0.000000e+00 4231.0
1 TraesCS3D01G086000 chr3D 91.321 507 32 9 1388 1888 43568608 43569108 0.000000e+00 682.0
2 TraesCS3D01G086000 chr3D 96.393 305 10 1 1987 2291 43576853 43577156 3.400000e-138 501.0
3 TraesCS3D01G086000 chr3D 89.844 384 26 11 1389 1766 43510436 43510812 4.430000e-132 481.0
4 TraesCS3D01G086000 chr3D 91.071 112 7 3 1 110 555574492 555574382 5.100000e-32 148.0
5 TraesCS3D01G086000 chr3D 96.491 57 2 0 1889 1945 43576849 43576793 6.740000e-16 95.3
6 TraesCS3D01G086000 chr3A 91.730 919 41 18 1388 2288 55485019 55485920 0.000000e+00 1243.0
7 TraesCS3D01G086000 chr3A 88.506 87 9 1 1567 1652 481877372 481877286 1.120000e-18 104.0
8 TraesCS3D01G086000 chr3B 90.940 894 49 14 1388 2262 68254811 68255691 0.000000e+00 1173.0
9 TraesCS3D01G086000 chr3B 88.643 361 37 2 1838 2195 67942368 67942727 9.720000e-119 436.0
10 TraesCS3D01G086000 chr7D 76.917 1239 240 30 152 1372 73607911 73609121 0.000000e+00 662.0
11 TraesCS3D01G086000 chr7D 97.849 93 2 0 1 93 382587789 382587881 6.550000e-36 161.0
12 TraesCS3D01G086000 chr7D 95.000 100 4 1 1 100 429488094 429488192 3.050000e-34 156.0
13 TraesCS3D01G086000 chr7D 92.157 51 3 1 1342 1392 454538107 454538156 1.140000e-08 71.3
14 TraesCS3D01G086000 chr7D 89.474 57 5 1 1334 1390 580318923 580318868 1.140000e-08 71.3
15 TraesCS3D01G086000 chr7A 76.204 727 122 31 658 1372 78131053 78131740 1.010000e-88 337.0
16 TraesCS3D01G086000 chr7A 94.118 102 5 1 1 102 304321943 304322043 1.100000e-33 154.0
17 TraesCS3D01G086000 chr7A 92.308 52 2 2 1341 1391 228180809 228180759 3.160000e-09 73.1
18 TraesCS3D01G086000 chr2D 96.117 103 3 1 1 103 584190685 584190786 1.410000e-37 167.0
19 TraesCS3D01G086000 chr5D 81.553 206 33 5 1569 1769 553292654 553292859 5.060000e-37 165.0
20 TraesCS3D01G086000 chr5D 88.506 87 9 1 1567 1652 195652879 195652793 1.120000e-18 104.0
21 TraesCS3D01G086000 chr5D 94.118 51 2 1 1342 1392 225261722 225261673 2.440000e-10 76.8
22 TraesCS3D01G086000 chr6B 97.872 94 2 0 1 94 697619206 697619113 1.820000e-36 163.0
23 TraesCS3D01G086000 chr7B 95.960 99 2 2 1 98 330531920 330532017 2.360000e-35 159.0
24 TraesCS3D01G086000 chr5B 94.231 104 5 1 1 103 69008588 69008485 8.470000e-35 158.0
25 TraesCS3D01G086000 chr5B 93.878 49 2 1 1342 1390 342744511 342744558 3.160000e-09 73.1
26 TraesCS3D01G086000 chr5B 92.157 51 3 1 1342 1392 194405525 194405574 1.140000e-08 71.3
27 TraesCS3D01G086000 chr6A 90.435 115 9 2 1 114 145719992 145719879 1.420000e-32 150.0
28 TraesCS3D01G086000 chr6A 86.567 67 7 2 1327 1391 175722094 175722028 3.160000e-09 73.1
29 TraesCS3D01G086000 chr5A 88.506 87 9 1 1567 1652 232836531 232836445 1.120000e-18 104.0
30 TraesCS3D01G086000 chr5A 90.164 61 3 3 1342 1400 110661502 110661561 2.440000e-10 76.8
31 TraesCS3D01G086000 chr5A 93.750 48 2 1 1345 1392 389329198 389329152 1.140000e-08 71.3
32 TraesCS3D01G086000 chr6D 73.529 272 61 6 272 542 452707288 452707549 2.420000e-15 93.5
33 TraesCS3D01G086000 chr2B 86.207 87 9 3 1568 1652 745509578 745509493 8.720000e-15 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G086000 chr3D 43532307 43534597 2290 False 4231 4231 100.000 1 2291 1 chr3D.!!$F2 2290
1 TraesCS3D01G086000 chr3D 43568608 43569108 500 False 682 682 91.321 1388 1888 1 chr3D.!!$F3 500
2 TraesCS3D01G086000 chr3A 55485019 55485920 901 False 1243 1243 91.730 1388 2288 1 chr3A.!!$F1 900
3 TraesCS3D01G086000 chr3B 68254811 68255691 880 False 1173 1173 90.940 1388 2262 1 chr3B.!!$F2 874
4 TraesCS3D01G086000 chr7D 73607911 73609121 1210 False 662 662 76.917 152 1372 1 chr7D.!!$F1 1220
5 TraesCS3D01G086000 chr7A 78131053 78131740 687 False 337 337 76.204 658 1372 1 chr7A.!!$F1 714

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
831 832 0.030603 TTGGAAAAACTGGGCCCCTT 60.031 50.0 22.27 7.8 0.0 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1810 1827 0.036765 AAGGAGGAAATACGTGCGCA 60.037 50.0 5.66 5.66 0.0 6.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.649831 TACGTGGACACACTCTCCC 58.350 57.895 0.00 0.00 45.50 4.30
19 20 0.896940 TACGTGGACACACTCTCCCC 60.897 60.000 0.00 0.00 45.50 4.81
20 21 1.908793 CGTGGACACACTCTCCCCT 60.909 63.158 3.12 0.00 45.50 4.79
21 22 1.878656 CGTGGACACACTCTCCCCTC 61.879 65.000 3.12 0.00 45.50 4.30
22 23 0.543174 GTGGACACACTCTCCCCTCT 60.543 60.000 0.00 0.00 44.29 3.69
23 24 0.251832 TGGACACACTCTCCCCTCTC 60.252 60.000 0.00 0.00 0.00 3.20
24 25 1.316706 GGACACACTCTCCCCTCTCG 61.317 65.000 0.00 0.00 0.00 4.04
25 26 0.609681 GACACACTCTCCCCTCTCGT 60.610 60.000 0.00 0.00 0.00 4.18
26 27 0.178958 ACACACTCTCCCCTCTCGTT 60.179 55.000 0.00 0.00 0.00 3.85
27 28 0.244994 CACACTCTCCCCTCTCGTTG 59.755 60.000 0.00 0.00 0.00 4.10
28 29 1.216710 CACTCTCCCCTCTCGTTGC 59.783 63.158 0.00 0.00 0.00 4.17
29 30 1.077625 ACTCTCCCCTCTCGTTGCT 59.922 57.895 0.00 0.00 0.00 3.91
30 31 0.331954 ACTCTCCCCTCTCGTTGCTA 59.668 55.000 0.00 0.00 0.00 3.49
31 32 1.063567 ACTCTCCCCTCTCGTTGCTAT 60.064 52.381 0.00 0.00 0.00 2.97
32 33 1.339610 CTCTCCCCTCTCGTTGCTATG 59.660 57.143 0.00 0.00 0.00 2.23
33 34 0.249657 CTCCCCTCTCGTTGCTATGC 60.250 60.000 0.00 0.00 0.00 3.14
34 35 0.975556 TCCCCTCTCGTTGCTATGCA 60.976 55.000 0.00 0.00 36.47 3.96
35 36 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.000 3.79 3.79 38.76 3.96
36 37 1.506493 CCCTCTCGTTGCTATGCATC 58.494 55.000 0.19 0.00 38.76 3.91
37 38 1.202568 CCCTCTCGTTGCTATGCATCA 60.203 52.381 0.19 0.00 38.76 3.07
38 39 1.863454 CCTCTCGTTGCTATGCATCAC 59.137 52.381 0.19 0.00 38.76 3.06
39 40 1.863454 CTCTCGTTGCTATGCATCACC 59.137 52.381 0.19 0.00 38.76 4.02
40 41 1.206849 TCTCGTTGCTATGCATCACCA 59.793 47.619 0.19 0.00 38.76 4.17
41 42 2.158914 TCTCGTTGCTATGCATCACCAT 60.159 45.455 0.19 0.00 38.76 3.55
42 43 1.941975 TCGTTGCTATGCATCACCATG 59.058 47.619 0.19 0.00 38.76 3.66
43 44 1.941975 CGTTGCTATGCATCACCATGA 59.058 47.619 0.19 0.00 38.76 3.07
44 45 2.551032 CGTTGCTATGCATCACCATGAT 59.449 45.455 0.19 0.00 38.76 2.45
45 46 3.364664 CGTTGCTATGCATCACCATGATC 60.365 47.826 0.19 0.00 38.76 2.92
46 47 2.786777 TGCTATGCATCACCATGATCC 58.213 47.619 0.19 0.00 34.28 3.36
47 48 2.374170 TGCTATGCATCACCATGATCCT 59.626 45.455 0.19 0.00 34.28 3.24
48 49 2.747989 GCTATGCATCACCATGATCCTG 59.252 50.000 0.19 0.00 34.28 3.86
49 50 3.809678 GCTATGCATCACCATGATCCTGT 60.810 47.826 0.19 0.00 34.28 4.00
50 51 2.047002 TGCATCACCATGATCCTGTG 57.953 50.000 0.00 0.00 34.28 3.66
51 52 1.282738 TGCATCACCATGATCCTGTGT 59.717 47.619 0.00 0.00 34.28 3.72
52 53 1.674441 GCATCACCATGATCCTGTGTG 59.326 52.381 0.00 10.98 34.28 3.82
53 54 2.942752 GCATCACCATGATCCTGTGTGT 60.943 50.000 14.49 0.00 34.28 3.72
54 55 2.477845 TCACCATGATCCTGTGTGTG 57.522 50.000 14.49 8.57 0.00 3.82
55 56 0.806868 CACCATGATCCTGTGTGTGC 59.193 55.000 0.00 0.00 0.00 4.57
56 57 0.674581 ACCATGATCCTGTGTGTGCG 60.675 55.000 0.00 0.00 0.00 5.34
57 58 0.674581 CCATGATCCTGTGTGTGCGT 60.675 55.000 0.00 0.00 0.00 5.24
58 59 1.405391 CCATGATCCTGTGTGTGCGTA 60.405 52.381 0.00 0.00 0.00 4.42
59 60 1.929169 CATGATCCTGTGTGTGCGTAG 59.071 52.381 0.00 0.00 0.00 3.51
60 61 0.246360 TGATCCTGTGTGTGCGTAGG 59.754 55.000 0.00 0.00 0.00 3.18
61 62 0.530744 GATCCTGTGTGTGCGTAGGA 59.469 55.000 0.00 0.00 43.01 2.94
62 63 0.973632 ATCCTGTGTGTGCGTAGGAA 59.026 50.000 0.00 0.00 42.20 3.36
63 64 0.753867 TCCTGTGTGTGCGTAGGAAA 59.246 50.000 0.00 0.00 36.44 3.13
64 65 1.346395 TCCTGTGTGTGCGTAGGAAAT 59.654 47.619 0.00 0.00 36.44 2.17
65 66 2.151202 CCTGTGTGTGCGTAGGAAATT 58.849 47.619 0.00 0.00 31.91 1.82
66 67 2.552315 CCTGTGTGTGCGTAGGAAATTT 59.448 45.455 0.00 0.00 31.91 1.82
67 68 3.004315 CCTGTGTGTGCGTAGGAAATTTT 59.996 43.478 0.00 0.00 31.91 1.82
68 69 4.499019 CCTGTGTGTGCGTAGGAAATTTTT 60.499 41.667 0.00 0.00 31.91 1.94
100 101 7.391148 ACTATGTTCACCAACAAATATCACC 57.609 36.000 0.00 0.00 45.78 4.02
101 102 6.945435 ACTATGTTCACCAACAAATATCACCA 59.055 34.615 0.00 0.00 45.78 4.17
102 103 6.855763 ATGTTCACCAACAAATATCACCAT 57.144 33.333 0.00 0.00 45.78 3.55
103 104 6.023357 TGTTCACCAACAAATATCACCATG 57.977 37.500 0.00 0.00 39.69 3.66
104 105 5.047448 TGTTCACCAACAAATATCACCATGG 60.047 40.000 11.19 11.19 39.69 3.66
105 106 3.446873 TCACCAACAAATATCACCATGGC 59.553 43.478 13.04 0.00 0.00 4.40
106 107 3.448301 CACCAACAAATATCACCATGGCT 59.552 43.478 13.04 0.00 0.00 4.75
107 108 3.448301 ACCAACAAATATCACCATGGCTG 59.552 43.478 13.04 9.79 0.00 4.85
109 110 3.668141 ACAAATATCACCATGGCTGGA 57.332 42.857 13.04 7.80 46.37 3.86
110 111 3.290710 ACAAATATCACCATGGCTGGAC 58.709 45.455 13.04 0.00 46.37 4.02
111 112 2.260844 AATATCACCATGGCTGGACG 57.739 50.000 13.04 0.00 46.37 4.79
112 113 1.423584 ATATCACCATGGCTGGACGA 58.576 50.000 13.04 0.00 46.37 4.20
113 114 1.199615 TATCACCATGGCTGGACGAA 58.800 50.000 13.04 0.00 46.37 3.85
114 115 0.327924 ATCACCATGGCTGGACGAAA 59.672 50.000 13.04 0.00 46.37 3.46
115 116 0.327924 TCACCATGGCTGGACGAAAT 59.672 50.000 13.04 0.00 46.37 2.17
116 117 1.557371 TCACCATGGCTGGACGAAATA 59.443 47.619 13.04 0.00 46.37 1.40
117 118 1.670811 CACCATGGCTGGACGAAATAC 59.329 52.381 13.04 0.00 46.37 1.89
118 119 1.559682 ACCATGGCTGGACGAAATACT 59.440 47.619 13.04 0.00 46.37 2.12
119 120 2.026262 ACCATGGCTGGACGAAATACTT 60.026 45.455 13.04 0.00 46.37 2.24
120 121 3.199071 ACCATGGCTGGACGAAATACTTA 59.801 43.478 13.04 0.00 46.37 2.24
121 122 3.560068 CCATGGCTGGACGAAATACTTAC 59.440 47.826 0.00 0.00 46.37 2.34
122 123 2.883574 TGGCTGGACGAAATACTTACG 58.116 47.619 0.00 0.00 0.00 3.18
123 124 1.591619 GGCTGGACGAAATACTTACGC 59.408 52.381 0.00 0.00 0.00 4.42
124 125 1.591619 GCTGGACGAAATACTTACGCC 59.408 52.381 0.00 0.00 0.00 5.68
125 126 2.883574 CTGGACGAAATACTTACGCCA 58.116 47.619 0.00 0.00 34.37 5.69
126 127 3.255725 CTGGACGAAATACTTACGCCAA 58.744 45.455 0.00 0.00 34.80 4.52
127 128 3.255725 TGGACGAAATACTTACGCCAAG 58.744 45.455 0.00 0.00 40.38 3.61
129 130 3.305361 GGACGAAATACTTACGCCAAGTC 59.695 47.826 6.30 0.00 44.48 3.01
130 131 2.919229 ACGAAATACTTACGCCAAGTCG 59.081 45.455 6.30 6.94 44.48 4.18
131 132 2.919229 CGAAATACTTACGCCAAGTCGT 59.081 45.455 6.30 0.00 44.48 4.34
132 133 3.001365 CGAAATACTTACGCCAAGTCGTC 60.001 47.826 6.30 3.21 44.48 4.20
133 134 2.573941 ATACTTACGCCAAGTCGTCC 57.426 50.000 6.30 0.00 44.48 4.79
134 135 1.246649 TACTTACGCCAAGTCGTCCA 58.753 50.000 6.30 0.00 44.48 4.02
135 136 0.606604 ACTTACGCCAAGTCGTCCAT 59.393 50.000 0.00 0.00 44.48 3.41
136 137 1.820519 ACTTACGCCAAGTCGTCCATA 59.179 47.619 0.00 0.00 44.48 2.74
137 138 2.231964 ACTTACGCCAAGTCGTCCATAA 59.768 45.455 0.00 0.00 44.48 1.90
138 139 2.282701 TACGCCAAGTCGTCCATAAC 57.717 50.000 0.00 0.00 43.15 1.89
139 140 0.390735 ACGCCAAGTCGTCCATAACC 60.391 55.000 0.00 0.00 38.44 2.85
140 141 0.108329 CGCCAAGTCGTCCATAACCT 60.108 55.000 0.00 0.00 0.00 3.50
141 142 1.653151 GCCAAGTCGTCCATAACCTC 58.347 55.000 0.00 0.00 0.00 3.85
142 143 1.742750 GCCAAGTCGTCCATAACCTCC 60.743 57.143 0.00 0.00 0.00 4.30
143 144 1.134491 CCAAGTCGTCCATAACCTCCC 60.134 57.143 0.00 0.00 0.00 4.30
144 145 1.553248 CAAGTCGTCCATAACCTCCCA 59.447 52.381 0.00 0.00 0.00 4.37
145 146 1.946984 AGTCGTCCATAACCTCCCAA 58.053 50.000 0.00 0.00 0.00 4.12
146 147 1.831736 AGTCGTCCATAACCTCCCAAG 59.168 52.381 0.00 0.00 0.00 3.61
147 148 0.539986 TCGTCCATAACCTCCCAAGC 59.460 55.000 0.00 0.00 0.00 4.01
148 149 0.463833 CGTCCATAACCTCCCAAGCC 60.464 60.000 0.00 0.00 0.00 4.35
149 150 0.623723 GTCCATAACCTCCCAAGCCA 59.376 55.000 0.00 0.00 0.00 4.75
150 151 1.215423 GTCCATAACCTCCCAAGCCAT 59.785 52.381 0.00 0.00 0.00 4.40
154 155 1.607225 TAACCTCCCAAGCCATCCAT 58.393 50.000 0.00 0.00 0.00 3.41
157 158 0.178998 CCTCCCAAGCCATCCATCAG 60.179 60.000 0.00 0.00 0.00 2.90
163 164 2.224695 CCAAGCCATCCATCAGCTCATA 60.225 50.000 0.00 0.00 35.30 2.15
166 167 1.072806 GCCATCCATCAGCTCATACCA 59.927 52.381 0.00 0.00 0.00 3.25
169 170 3.580022 CCATCCATCAGCTCATACCACTA 59.420 47.826 0.00 0.00 0.00 2.74
172 173 3.384789 TCCATCAGCTCATACCACTACAC 59.615 47.826 0.00 0.00 0.00 2.90
181 182 5.521735 GCTCATACCACTACACATGAAGAAG 59.478 44.000 0.00 0.00 0.00 2.85
192 193 2.158623 ACATGAAGAAGGGTGTTCTGCA 60.159 45.455 0.00 0.00 38.38 4.41
193 194 1.967319 TGAAGAAGGGTGTTCTGCAC 58.033 50.000 0.00 0.00 46.97 4.57
208 209 6.036517 GTGTTCTGCACGAGATCATTAAGATT 59.963 38.462 0.00 0.00 38.45 2.40
209 210 7.222805 GTGTTCTGCACGAGATCATTAAGATTA 59.777 37.037 0.00 0.00 38.45 1.75
210 211 7.928167 TGTTCTGCACGAGATCATTAAGATTAT 59.072 33.333 0.00 0.00 37.00 1.28
217 218 8.037758 CACGAGATCATTAAGATTATAAGGGCT 58.962 37.037 0.00 0.00 37.00 5.19
231 232 1.216990 AGGGCTTTCCTATGGTCTGG 58.783 55.000 0.00 0.00 45.98 3.86
235 236 1.340017 GCTTTCCTATGGTCTGGCACA 60.340 52.381 0.00 0.00 0.00 4.57
236 237 2.359900 CTTTCCTATGGTCTGGCACAC 58.640 52.381 0.00 0.00 0.00 3.82
244 245 0.751643 GGTCTGGCACACACAAGGTT 60.752 55.000 0.00 0.00 0.00 3.50
258 259 6.158598 CACACAAGGTTAATGGAGGAAAATG 58.841 40.000 0.00 0.00 0.00 2.32
259 260 5.170748 CACAAGGTTAATGGAGGAAAATGC 58.829 41.667 0.00 0.00 0.00 3.56
263 264 6.041423 AGGTTAATGGAGGAAAATGCAAAG 57.959 37.500 0.00 0.00 0.00 2.77
267 268 4.796038 ATGGAGGAAAATGCAAAGTGAG 57.204 40.909 0.00 0.00 0.00 3.51
268 269 2.892852 TGGAGGAAAATGCAAAGTGAGG 59.107 45.455 0.00 0.00 0.00 3.86
270 271 3.305608 GGAGGAAAATGCAAAGTGAGGTG 60.306 47.826 0.00 0.00 0.00 4.00
276 277 1.067295 TGCAAAGTGAGGTGGGAGAT 58.933 50.000 0.00 0.00 0.00 2.75
277 278 1.425066 TGCAAAGTGAGGTGGGAGATT 59.575 47.619 0.00 0.00 0.00 2.40
292 293 0.178981 AGATTGTGTGCAGGCCAACT 60.179 50.000 5.01 0.00 0.00 3.16
295 296 0.395586 TTGTGTGCAGGCCAACTTCT 60.396 50.000 5.01 0.00 0.00 2.85
296 297 0.819259 TGTGTGCAGGCCAACTTCTC 60.819 55.000 5.01 0.00 0.00 2.87
297 298 1.228245 TGTGCAGGCCAACTTCTCC 60.228 57.895 5.01 0.00 0.00 3.71
305 306 1.003718 CCAACTTCTCCGGGTGGTC 60.004 63.158 0.00 0.00 36.30 4.02
307 308 1.263356 CAACTTCTCCGGGTGGTCTA 58.737 55.000 0.00 0.00 36.30 2.59
319 320 0.755686 GTGGTCTAGGCATCCTGGAG 59.244 60.000 1.52 0.00 41.70 3.86
320 321 0.339859 TGGTCTAGGCATCCTGGAGT 59.660 55.000 1.52 0.00 41.70 3.85
321 322 1.273838 TGGTCTAGGCATCCTGGAGTT 60.274 52.381 1.52 0.00 41.70 3.01
322 323 1.139853 GGTCTAGGCATCCTGGAGTTG 59.860 57.143 1.52 0.00 41.70 3.16
336 337 2.225017 TGGAGTTGGACAAATTCTCCCC 60.225 50.000 14.12 0.67 42.58 4.81
343 344 0.040204 ACAAATTCTCCCCTGCCCTG 59.960 55.000 0.00 0.00 0.00 4.45
350 351 3.260100 CCCCTGCCCTGAGGTTGT 61.260 66.667 0.00 0.00 34.57 3.32
351 352 2.034687 CCCTGCCCTGAGGTTGTG 59.965 66.667 0.00 0.00 34.57 3.33
352 353 2.833913 CCCTGCCCTGAGGTTGTGT 61.834 63.158 0.00 0.00 34.57 3.72
355 356 1.152777 TGCCCTGAGGTTGTGTTGG 60.153 57.895 0.00 0.00 34.57 3.77
379 380 2.204090 TGGGAGTGGAAGGACCCC 60.204 66.667 0.00 0.00 41.44 4.95
380 381 3.015753 GGGAGTGGAAGGACCCCC 61.016 72.222 0.00 0.00 36.65 5.40
382 383 2.284405 GAGTGGAAGGACCCCCGA 60.284 66.667 0.00 0.00 38.00 5.14
393 394 3.330720 CCCCCGAAGAGCTTGGGT 61.331 66.667 9.88 0.00 41.63 4.51
394 395 2.757077 CCCCGAAGAGCTTGGGTT 59.243 61.111 9.88 0.00 41.63 4.11
406 407 1.286248 CTTGGGTTGGGCTAGGTACT 58.714 55.000 0.00 0.00 46.37 2.73
419 420 3.489398 GCTAGGTACTCCTTGTGACGATG 60.489 52.174 0.00 0.00 42.12 3.84
421 422 2.755655 AGGTACTCCTTGTGACGATGAG 59.244 50.000 3.88 3.88 42.12 2.90
423 424 1.924731 ACTCCTTGTGACGATGAGGA 58.075 50.000 9.47 3.96 36.85 3.71
424 425 1.546476 ACTCCTTGTGACGATGAGGAC 59.454 52.381 9.47 0.00 34.70 3.85
430 431 1.204704 TGTGACGATGAGGACATGGAC 59.795 52.381 0.00 0.00 36.82 4.02
431 432 0.824109 TGACGATGAGGACATGGACC 59.176 55.000 0.00 0.00 36.82 4.46
436 437 2.939103 CGATGAGGACATGGACCTTTTC 59.061 50.000 13.54 12.05 37.93 2.29
437 438 3.369892 CGATGAGGACATGGACCTTTTCT 60.370 47.826 13.54 1.92 37.93 2.52
439 440 5.453903 CGATGAGGACATGGACCTTTTCTAT 60.454 44.000 13.54 5.75 37.93 1.98
452 453 2.589798 TTTCTATAAGGCCACGTCCG 57.410 50.000 5.01 0.00 0.00 4.79
466 467 1.814527 GTCCGTCACGCTTAGGGAT 59.185 57.895 2.58 0.00 33.06 3.85
471 472 0.105039 GTCACGCTTAGGGATGGGAG 59.895 60.000 2.58 0.00 33.06 4.30
475 476 1.048724 CGCTTAGGGATGGGAGGACA 61.049 60.000 0.00 0.00 0.00 4.02
476 477 1.213296 GCTTAGGGATGGGAGGACAA 58.787 55.000 0.00 0.00 0.00 3.18
484 485 2.490902 GGATGGGAGGACAACCAAGTTT 60.491 50.000 0.00 0.00 40.73 2.66
486 487 2.383855 TGGGAGGACAACCAAGTTTTG 58.616 47.619 0.00 0.00 38.94 2.44
532 533 2.887152 CAAGCCTAAGGATATTGCACCC 59.113 50.000 0.00 0.00 0.00 4.61
538 539 3.515602 AAGGATATTGCACCCTCCATC 57.484 47.619 9.59 0.00 0.00 3.51
542 543 2.620251 TATTGCACCCTCCATCTTCG 57.380 50.000 0.00 0.00 0.00 3.79
543 544 0.911769 ATTGCACCCTCCATCTTCGA 59.088 50.000 0.00 0.00 0.00 3.71
545 546 1.519455 GCACCCTCCATCTTCGACG 60.519 63.158 0.00 0.00 0.00 5.12
550 551 1.384525 CCTCCATCTTCGACGTCTCT 58.615 55.000 14.70 0.00 0.00 3.10
551 552 2.562635 CCTCCATCTTCGACGTCTCTA 58.437 52.381 14.70 0.00 0.00 2.43
556 557 3.128938 CCATCTTCGACGTCTCTAGGTTT 59.871 47.826 14.70 0.00 0.00 3.27
559 560 3.686726 TCTTCGACGTCTCTAGGTTTACC 59.313 47.826 14.70 0.00 0.00 2.85
566 567 4.346127 ACGTCTCTAGGTTTACCAAAGGTT 59.654 41.667 1.13 0.00 37.09 3.50
576 577 1.408969 ACCAAAGGTTGCGTCCAAAT 58.591 45.000 0.03 0.00 27.29 2.32
577 578 1.760029 ACCAAAGGTTGCGTCCAAATT 59.240 42.857 0.03 0.00 27.29 1.82
578 579 2.959707 ACCAAAGGTTGCGTCCAAATTA 59.040 40.909 0.03 0.00 27.29 1.40
579 580 3.385111 ACCAAAGGTTGCGTCCAAATTAA 59.615 39.130 0.03 0.00 27.29 1.40
580 581 4.141914 ACCAAAGGTTGCGTCCAAATTAAA 60.142 37.500 0.03 0.00 27.29 1.52
581 582 4.811557 CCAAAGGTTGCGTCCAAATTAAAA 59.188 37.500 0.03 0.00 31.68 1.52
582 583 5.050431 CCAAAGGTTGCGTCCAAATTAAAAG 60.050 40.000 0.03 0.00 31.68 2.27
583 584 3.649073 AGGTTGCGTCCAAATTAAAAGC 58.351 40.909 0.03 0.00 31.68 3.51
584 585 3.320826 AGGTTGCGTCCAAATTAAAAGCT 59.679 39.130 0.03 0.00 31.68 3.74
586 587 5.185056 AGGTTGCGTCCAAATTAAAAGCTAT 59.815 36.000 0.00 0.00 31.68 2.97
587 588 5.288472 GGTTGCGTCCAAATTAAAAGCTATG 59.712 40.000 0.00 0.00 31.68 2.23
588 589 4.420168 TGCGTCCAAATTAAAAGCTATGC 58.580 39.130 0.00 0.00 0.00 3.14
590 591 4.265320 GCGTCCAAATTAAAAGCTATGCAC 59.735 41.667 0.00 0.00 0.00 4.57
591 592 5.398169 CGTCCAAATTAAAAGCTATGCACA 58.602 37.500 0.00 0.00 0.00 4.57
593 594 6.183359 CGTCCAAATTAAAAGCTATGCACAAC 60.183 38.462 0.00 0.00 0.00 3.32
594 595 5.861251 TCCAAATTAAAAGCTATGCACAACG 59.139 36.000 0.00 0.00 0.00 4.10
595 596 5.062058 CCAAATTAAAAGCTATGCACAACGG 59.938 40.000 0.00 0.00 0.00 4.44
596 597 2.911819 TAAAAGCTATGCACAACGGC 57.088 45.000 0.00 0.00 0.00 5.68
597 598 0.109781 AAAAGCTATGCACAACGGCG 60.110 50.000 4.80 4.80 36.28 6.46
598 599 0.953471 AAAGCTATGCACAACGGCGA 60.953 50.000 16.62 0.00 36.28 5.54
599 600 1.635663 AAGCTATGCACAACGGCGAC 61.636 55.000 16.62 0.00 36.28 5.19
605 606 3.041940 CACAACGGCGACTGGGTC 61.042 66.667 16.62 0.00 0.00 4.46
614 615 2.125106 GACTGGGTCCGGCACATC 60.125 66.667 0.00 0.00 0.00 3.06
615 616 2.927856 ACTGGGTCCGGCACATCA 60.928 61.111 0.00 0.00 0.00 3.07
620 621 2.332654 GGTCCGGCACATCAACACC 61.333 63.158 0.00 0.00 0.00 4.16
621 622 1.302511 GTCCGGCACATCAACACCT 60.303 57.895 0.00 0.00 0.00 4.00
626 627 1.327303 GGCACATCAACACCTCCAAA 58.673 50.000 0.00 0.00 0.00 3.28
627 628 1.686052 GGCACATCAACACCTCCAAAA 59.314 47.619 0.00 0.00 0.00 2.44
629 630 3.578688 GCACATCAACACCTCCAAAATC 58.421 45.455 0.00 0.00 0.00 2.17
633 634 3.304911 TCAACACCTCCAAAATCACCA 57.695 42.857 0.00 0.00 0.00 4.17
637 638 0.893727 ACCTCCAAAATCACCACCGC 60.894 55.000 0.00 0.00 0.00 5.68
638 639 0.893270 CCTCCAAAATCACCACCGCA 60.893 55.000 0.00 0.00 0.00 5.69
644 645 1.327303 AAATCACCACCGCACAACAT 58.673 45.000 0.00 0.00 0.00 2.71
648 649 2.509569 TCACCACCGCACAACATATTT 58.490 42.857 0.00 0.00 0.00 1.40
650 651 3.319405 TCACCACCGCACAACATATTTTT 59.681 39.130 0.00 0.00 0.00 1.94
653 654 3.919804 CCACCGCACAACATATTTTTGAG 59.080 43.478 1.56 0.00 0.00 3.02
656 657 5.116983 CACCGCACAACATATTTTTGAGTTC 59.883 40.000 1.56 0.00 0.00 3.01
667 668 2.154854 TTTGAGTTCGTGGCTCTCTG 57.845 50.000 0.00 0.00 34.30 3.35
673 674 0.541998 TTCGTGGCTCTCTGGGAGAA 60.542 55.000 9.17 0.00 44.45 2.87
675 676 1.904032 GTGGCTCTCTGGGAGAAGG 59.096 63.158 9.17 0.00 44.45 3.46
681 682 1.920325 CTCTGGGAGAAGGTGGCCA 60.920 63.158 0.00 0.00 0.00 5.36
682 683 1.229951 TCTGGGAGAAGGTGGCCAT 60.230 57.895 9.72 0.00 0.00 4.40
683 684 0.846427 TCTGGGAGAAGGTGGCCATT 60.846 55.000 9.72 0.00 0.00 3.16
686 687 0.623723 GGGAGAAGGTGGCCATTGTA 59.376 55.000 9.72 0.00 0.00 2.41
695 696 0.961857 TGGCCATTGTACAGCTGCAG 60.962 55.000 15.27 10.11 0.00 4.41
698 699 1.089920 CCATTGTACAGCTGCAGGAC 58.910 55.000 17.12 7.65 0.00 3.85
699 700 1.611410 CCATTGTACAGCTGCAGGACA 60.611 52.381 17.12 5.94 0.00 4.02
700 701 1.466167 CATTGTACAGCTGCAGGACAC 59.534 52.381 17.12 3.05 0.00 3.67
704 705 2.111999 TACAGCTGCAGGACACCACC 62.112 60.000 17.12 0.00 0.00 4.61
707 708 3.569210 CTGCAGGACACCACCCCA 61.569 66.667 5.57 0.00 0.00 4.96
710 711 2.606587 GCAGGACACCACCCCAGAT 61.607 63.158 0.00 0.00 0.00 2.90
711 712 1.604378 CAGGACACCACCCCAGATC 59.396 63.158 0.00 0.00 0.00 2.75
712 713 1.160870 AGGACACCACCCCAGATCA 59.839 57.895 0.00 0.00 0.00 2.92
713 714 1.201429 AGGACACCACCCCAGATCAC 61.201 60.000 0.00 0.00 0.00 3.06
716 717 1.004745 GACACCACCCCAGATCACATT 59.995 52.381 0.00 0.00 0.00 2.71
719 720 1.428912 ACCACCCCAGATCACATTGTT 59.571 47.619 0.00 0.00 0.00 2.83
720 721 2.158325 ACCACCCCAGATCACATTGTTT 60.158 45.455 0.00 0.00 0.00 2.83
722 723 1.895131 ACCCCAGATCACATTGTTTGC 59.105 47.619 0.00 0.00 0.00 3.68
728 729 3.073678 AGATCACATTGTTTGCACGCTA 58.926 40.909 0.00 0.00 0.00 4.26
729 730 3.691118 AGATCACATTGTTTGCACGCTAT 59.309 39.130 0.00 0.00 0.00 2.97
732 733 4.907579 TCACATTGTTTGCACGCTATATG 58.092 39.130 0.00 0.00 0.00 1.78
733 734 3.483196 CACATTGTTTGCACGCTATATGC 59.517 43.478 0.00 0.00 43.68 3.14
737 738 2.213499 GTTTGCACGCTATATGCCTCT 58.787 47.619 0.00 0.00 42.69 3.69
740 741 0.318441 GCACGCTATATGCCTCTGGA 59.682 55.000 0.00 0.00 37.08 3.86
743 744 2.036475 CACGCTATATGCCTCTGGAGTT 59.964 50.000 0.00 0.00 38.78 3.01
746 747 4.238514 CGCTATATGCCTCTGGAGTTTAC 58.761 47.826 0.00 0.00 38.78 2.01
753 754 1.207089 CCTCTGGAGTTTACGATGCCA 59.793 52.381 0.00 0.00 0.00 4.92
757 758 1.066430 TGGAGTTTACGATGCCACCTC 60.066 52.381 0.00 0.00 0.00 3.85
759 760 0.108329 AGTTTACGATGCCACCTCGG 60.108 55.000 0.00 0.00 40.37 4.63
779 780 1.775385 CTTACCGGGCCCAATTTGAT 58.225 50.000 24.92 0.00 0.00 2.57
783 784 0.969917 CCGGGCCCAATTTGATGACA 60.970 55.000 24.92 0.00 0.00 3.58
799 800 6.239217 TGATGACATTGCTCCTACAACTAT 57.761 37.500 0.00 0.00 31.03 2.12
806 807 3.178046 TGCTCCTACAACTATGAACCCA 58.822 45.455 0.00 0.00 0.00 4.51
807 808 3.055385 TGCTCCTACAACTATGAACCCAC 60.055 47.826 0.00 0.00 0.00 4.61
822 823 2.827755 ACCCACTGGTTTGGAAAAACT 58.172 42.857 0.00 0.00 44.75 2.66
826 827 1.484653 ACTGGTTTGGAAAAACTGGGC 59.515 47.619 1.76 0.00 33.37 5.36
831 832 0.030603 TTGGAAAAACTGGGCCCCTT 60.031 50.000 22.27 7.80 0.00 3.95
834 835 0.471022 GAAAAACTGGGCCCCTTCCA 60.471 55.000 22.27 0.00 0.00 3.53
840 841 1.902765 CTGGGCCCCTTCCAAAATGC 61.903 60.000 22.27 0.00 33.36 3.56
843 844 0.399833 GGCCCCTTCCAAAATGCAAA 59.600 50.000 0.00 0.00 0.00 3.68
846 847 3.308046 GGCCCCTTCCAAAATGCAAAATA 60.308 43.478 0.00 0.00 0.00 1.40
850 851 6.625520 GCCCCTTCCAAAATGCAAAATATTTG 60.626 38.462 0.39 0.00 33.62 2.32
872 873 2.299993 TGGCTCGTGCTTCAAGATAG 57.700 50.000 9.61 0.00 39.59 2.08
874 875 2.159184 TGGCTCGTGCTTCAAGATAGAG 60.159 50.000 9.61 0.00 39.59 2.43
876 877 3.112580 GCTCGTGCTTCAAGATAGAGTC 58.887 50.000 1.41 0.00 36.03 3.36
882 883 3.129462 TGCTTCAAGATAGAGTCTGGACG 59.871 47.826 1.86 0.00 36.61 4.79
885 886 3.280295 TCAAGATAGAGTCTGGACGACC 58.720 50.000 1.86 0.00 43.91 4.79
888 889 2.105134 AGATAGAGTCTGGACGACCGAT 59.895 50.000 1.86 0.00 43.91 4.18
892 893 2.105134 AGAGTCTGGACGACCGATAGAT 59.895 50.000 0.00 0.00 43.91 1.98
897 898 1.067060 TGGACGACCGATAGATTGCAG 59.933 52.381 0.00 0.00 39.42 4.41
898 899 1.067212 GGACGACCGATAGATTGCAGT 59.933 52.381 0.00 0.00 39.76 4.40
912 916 3.137687 CAGTGGGGTTGGCCAAAC 58.862 61.111 26.15 26.15 38.12 2.93
915 919 1.760480 GTGGGGTTGGCCAAACTGT 60.760 57.895 31.79 0.00 38.92 3.55
930 934 0.536006 ACTGTGGAGTTTGCCAGCTC 60.536 55.000 0.00 0.00 38.95 4.09
942 946 1.584380 GCCAGCTCTGCAAAGTCCAG 61.584 60.000 0.00 0.00 0.00 3.86
985 989 1.063616 TCTTCAAGCGTCGATACTCCG 59.936 52.381 0.00 0.00 0.00 4.63
993 997 1.008881 TCGATACTCCGTGCGCATC 60.009 57.895 15.91 3.69 0.00 3.91
1019 1023 2.236766 GATGATCCAATCCTGGCTTGG 58.763 52.381 20.73 20.73 43.17 3.61
1025 1029 0.038744 CAATCCTGGCTTGGTCTGGT 59.961 55.000 2.32 0.00 0.00 4.00
1026 1030 0.779997 AATCCTGGCTTGGTCTGGTT 59.220 50.000 0.00 0.00 0.00 3.67
1030 1034 2.116125 GGCTTGGTCTGGTTGGCT 59.884 61.111 0.00 0.00 0.00 4.75
1031 1035 1.531602 GGCTTGGTCTGGTTGGCTT 60.532 57.895 0.00 0.00 0.00 4.35
1032 1036 1.662044 GCTTGGTCTGGTTGGCTTG 59.338 57.895 0.00 0.00 0.00 4.01
1033 1037 1.809567 GCTTGGTCTGGTTGGCTTGG 61.810 60.000 0.00 0.00 0.00 3.61
1035 1039 0.467290 TTGGTCTGGTTGGCTTGGAC 60.467 55.000 0.00 0.00 0.00 4.02
1036 1040 1.603739 GGTCTGGTTGGCTTGGACC 60.604 63.158 0.00 0.00 39.41 4.46
1037 1041 1.603739 GTCTGGTTGGCTTGGACCC 60.604 63.158 0.00 0.00 34.99 4.46
1038 1042 2.283173 CTGGTTGGCTTGGACCCC 60.283 66.667 0.00 0.00 34.99 4.95
1039 1043 4.278513 TGGTTGGCTTGGACCCCG 62.279 66.667 0.00 0.00 34.99 5.73
1040 1044 3.961414 GGTTGGCTTGGACCCCGA 61.961 66.667 0.00 0.00 0.00 5.14
1052 1056 4.821589 CCCCGACTCTTGGAGCGC 62.822 72.222 0.00 0.00 32.04 5.92
1057 1061 2.734673 GACTCTTGGAGCGCGCTTG 61.735 63.158 36.87 23.83 32.04 4.01
1058 1062 2.740055 CTCTTGGAGCGCGCTTGT 60.740 61.111 36.87 14.37 0.00 3.16
1059 1063 2.280797 TCTTGGAGCGCGCTTGTT 60.281 55.556 36.87 13.90 0.00 2.83
1061 1065 1.441016 CTTGGAGCGCGCTTGTTTC 60.441 57.895 36.87 21.93 0.00 2.78
1063 1067 3.411351 GGAGCGCGCTTGTTTCGA 61.411 61.111 36.87 0.00 0.00 3.71
1064 1068 2.740714 GGAGCGCGCTTGTTTCGAT 61.741 57.895 36.87 9.72 0.00 3.59
1068 1072 1.122419 GCGCGCTTGTTTCGATCAAG 61.122 55.000 26.67 19.71 43.31 3.02
1078 1082 1.348064 TTCGATCAAGGAGTGGTGGT 58.652 50.000 0.00 0.00 0.00 4.16
1097 1101 1.676967 CCTCCTTGTGCCTTCCTGC 60.677 63.158 0.00 0.00 0.00 4.85
1098 1102 1.377994 CTCCTTGTGCCTTCCTGCT 59.622 57.895 0.00 0.00 0.00 4.24
1101 1105 1.228367 CTTGTGCCTTCCTGCTGGT 60.228 57.895 9.73 0.00 34.23 4.00
1107 1111 1.517832 CCTTCCTGCTGGTAGACGG 59.482 63.158 16.42 4.85 33.18 4.79
1128 1132 1.376037 CCGTGCTTTGTCCTCCCTC 60.376 63.158 0.00 0.00 0.00 4.30
1131 1135 0.402121 GTGCTTTGTCCTCCCTCCTT 59.598 55.000 0.00 0.00 0.00 3.36
1137 1141 0.178891 TGTCCTCCCTCCTTCTGCTT 60.179 55.000 0.00 0.00 0.00 3.91
1138 1142 0.251634 GTCCTCCCTCCTTCTGCTTG 59.748 60.000 0.00 0.00 0.00 4.01
1140 1144 0.251634 CCTCCCTCCTTCTGCTTGTC 59.748 60.000 0.00 0.00 0.00 3.18
1143 1147 0.671781 CCCTCCTTCTGCTTGTCGTG 60.672 60.000 0.00 0.00 0.00 4.35
1149 1153 0.249868 TTCTGCTTGTCGTGTGGGAG 60.250 55.000 0.00 0.00 0.00 4.30
1150 1154 2.280797 TGCTTGTCGTGTGGGAGC 60.281 61.111 0.00 0.00 0.00 4.70
1152 1156 2.320587 GCTTGTCGTGTGGGAGCTG 61.321 63.158 0.00 0.00 0.00 4.24
1184 1188 1.091771 AATGCTCGCGTCTTCCATGG 61.092 55.000 4.97 4.97 0.00 3.66
1185 1189 1.960040 ATGCTCGCGTCTTCCATGGA 61.960 55.000 11.44 11.44 0.00 3.41
1186 1190 1.447838 GCTCGCGTCTTCCATGGAA 60.448 57.895 25.53 25.53 0.00 3.53
1202 1206 1.492176 TGGAATCTCCTCCATGCCTTC 59.508 52.381 0.00 0.00 40.71 3.46
1206 1210 1.523258 CTCCTCCATGCCTTCTGCG 60.523 63.158 0.00 0.00 45.60 5.18
1209 1213 1.817099 CTCCATGCCTTCTGCGGTC 60.817 63.158 0.00 0.00 45.60 4.79
1212 1216 1.372087 CCATGCCTTCTGCGGTCTTC 61.372 60.000 0.00 0.00 45.60 2.87
1224 1228 2.247311 CGGTCTTCGCCAAAATCAAG 57.753 50.000 0.00 0.00 0.00 3.02
1227 1231 2.094545 GGTCTTCGCCAAAATCAAGCAT 60.095 45.455 0.00 0.00 0.00 3.79
1293 1298 1.008309 GATGCCGCGAGAGTAGTCC 60.008 63.158 8.23 0.00 0.00 3.85
1295 1300 4.253257 GCCGCGAGAGTAGTCCCG 62.253 72.222 8.23 0.00 0.00 5.14
1296 1301 2.823147 CCGCGAGAGTAGTCCCGT 60.823 66.667 8.23 0.00 0.00 5.28
1299 1304 0.522915 CGCGAGAGTAGTCCCGTTTC 60.523 60.000 0.00 0.00 0.00 2.78
1303 1308 3.860002 GCGAGAGTAGTCCCGTTTCTTTT 60.860 47.826 3.30 0.00 0.00 2.27
1304 1309 4.304939 CGAGAGTAGTCCCGTTTCTTTTT 58.695 43.478 0.00 0.00 0.00 1.94
1306 1311 5.539979 GAGAGTAGTCCCGTTTCTTTTTCT 58.460 41.667 0.00 0.00 0.00 2.52
1307 1312 5.298347 AGAGTAGTCCCGTTTCTTTTTCTG 58.702 41.667 0.00 0.00 0.00 3.02
1308 1313 4.386711 AGTAGTCCCGTTTCTTTTTCTGG 58.613 43.478 0.00 0.00 0.00 3.86
1309 1314 2.583143 AGTCCCGTTTCTTTTTCTGGG 58.417 47.619 0.00 0.00 38.02 4.45
1310 1315 1.000607 GTCCCGTTTCTTTTTCTGGGC 60.001 52.381 0.00 0.00 36.56 5.36
1311 1316 1.036707 CCCGTTTCTTTTTCTGGGCA 58.963 50.000 0.00 0.00 0.00 5.36
1312 1317 1.618343 CCCGTTTCTTTTTCTGGGCAT 59.382 47.619 0.00 0.00 0.00 4.40
1314 1319 2.558359 CCGTTTCTTTTTCTGGGCATCT 59.442 45.455 0.00 0.00 0.00 2.90
1315 1320 3.756434 CCGTTTCTTTTTCTGGGCATCTA 59.244 43.478 0.00 0.00 0.00 1.98
1317 1322 5.335127 CGTTTCTTTTTCTGGGCATCTATG 58.665 41.667 0.00 0.00 0.00 2.23
1318 1323 5.106157 CGTTTCTTTTTCTGGGCATCTATGT 60.106 40.000 0.00 0.00 0.00 2.29
1319 1324 6.325596 GTTTCTTTTTCTGGGCATCTATGTC 58.674 40.000 0.00 0.00 0.00 3.06
1332 1337 6.465894 GGGCATCTATGTCCCTATTACTTTGT 60.466 42.308 1.94 0.00 46.74 2.83
1369 1374 6.726490 ATTGAATATGATGAGGCAAAGCTT 57.274 33.333 0.00 0.00 0.00 3.74
1372 1377 6.334989 TGAATATGATGAGGCAAAGCTTTTG 58.665 36.000 9.53 6.62 0.00 2.44
1490 1497 9.838339 ACAAATCATAAGTATAGAACAGGAAGG 57.162 33.333 0.00 0.00 0.00 3.46
1629 1640 5.506483 CGTTGTACACCCATGTTCATTTTCA 60.506 40.000 0.00 0.00 40.48 2.69
1630 1641 6.454795 GTTGTACACCCATGTTCATTTTCAT 58.545 36.000 0.00 0.00 40.48 2.57
1649 1660 2.283101 TGGAATGGGTGCCTGTGC 60.283 61.111 0.00 0.00 38.26 4.57
1660 1671 2.584064 CCTGTGCTATCCGTGGCA 59.416 61.111 0.00 0.00 39.74 4.92
1671 1682 0.035820 TCCGTGGCACTGGAATTACC 60.036 55.000 22.74 0.00 39.54 2.85
1675 1686 0.398696 TGGCACTGGAATTACCGTGT 59.601 50.000 13.11 1.68 41.51 4.49
1678 1689 2.356135 GCACTGGAATTACCGTGTGAT 58.644 47.619 13.11 0.00 43.31 3.06
1792 1809 4.284178 CAGGGATTCCTTGACAATTCCAT 58.716 43.478 9.14 0.00 42.67 3.41
1806 1823 4.129380 CAATTCCATGAATACTCGCCTCA 58.871 43.478 0.00 0.00 31.46 3.86
1810 1827 2.549563 CCATGAATACTCGCCTCAGCAT 60.550 50.000 0.00 0.00 39.83 3.79
1874 1891 2.423898 GGGCGAGAAGACCGATGGA 61.424 63.158 0.00 0.00 38.99 3.41
1875 1892 1.742768 GGCGAGAAGACCGATGGAT 59.257 57.895 0.00 0.00 0.00 3.41
1907 1924 2.599082 GTGGATCATCAGTTTCGTCGAC 59.401 50.000 5.18 5.18 0.00 4.20
1964 1981 4.746611 AGCTTGCTTTTTATTCACAAGTGC 59.253 37.500 0.00 0.00 39.86 4.40
1999 2016 2.509052 TGTGTGACTGAAGAAGGACG 57.491 50.000 0.00 0.00 0.00 4.79
2002 2019 1.340248 TGTGACTGAAGAAGGACGGAC 59.660 52.381 0.00 0.00 0.00 4.79
2003 2020 0.966920 TGACTGAAGAAGGACGGACC 59.033 55.000 0.00 0.00 39.35 4.46
2034 2051 4.899239 GCCCGAGGCCATCACGAG 62.899 72.222 5.01 0.00 44.06 4.18
2035 2052 4.227134 CCCGAGGCCATCACGAGG 62.227 72.222 5.01 5.31 0.00 4.63
2040 2065 1.383109 AGGCCATCACGAGGGATGA 60.383 57.895 16.24 0.00 46.00 2.92
2074 2099 6.800408 TCGTCGAGATTAGTTAGTTTGTCTTG 59.200 38.462 0.00 0.00 0.00 3.02
2075 2100 6.581542 CGTCGAGATTAGTTAGTTTGTCTTGT 59.418 38.462 0.00 0.00 0.00 3.16
2097 2122 9.226345 CTTGTTTTTCTCAGAGTTGTGAATAAC 57.774 33.333 13.60 13.60 42.49 1.89
2218 2243 8.682936 AGAAATCATCCTGGTATGTTATTGTC 57.317 34.615 0.00 0.00 0.00 3.18
2221 2246 3.188159 TCCTGGTATGTTATTGTCGGC 57.812 47.619 0.00 0.00 0.00 5.54
2264 2289 5.783100 CAAGTTTGCAATTCACTTGTTGT 57.217 34.783 24.72 1.04 41.64 3.32
2269 2294 7.908230 AGTTTGCAATTCACTTGTTGTATTTG 58.092 30.769 0.00 0.00 37.18 2.32
2288 2313 9.428097 TGTATTTGTGCTCTCATATGTGATATC 57.572 33.333 7.88 0.00 32.98 1.63
2289 2314 9.650539 GTATTTGTGCTCTCATATGTGATATCT 57.349 33.333 7.88 0.00 32.98 1.98
2290 2315 8.774890 ATTTGTGCTCTCATATGTGATATCTC 57.225 34.615 7.88 0.63 32.98 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.896940 GGGGAGAGTGTGTCCACGTA 60.897 60.000 0.00 0.00 46.56 3.57
2 3 1.878656 GAGGGGAGAGTGTGTCCACG 61.879 65.000 0.00 0.00 46.56 4.94
3 4 0.543174 AGAGGGGAGAGTGTGTCCAC 60.543 60.000 0.00 0.00 42.17 4.02
5 6 1.316706 CGAGAGGGGAGAGTGTGTCC 61.317 65.000 0.00 0.00 0.00 4.02
6 7 0.609681 ACGAGAGGGGAGAGTGTGTC 60.610 60.000 0.00 0.00 0.00 3.67
7 8 0.178958 AACGAGAGGGGAGAGTGTGT 60.179 55.000 0.00 0.00 0.00 3.72
8 9 0.244994 CAACGAGAGGGGAGAGTGTG 59.755 60.000 0.00 0.00 0.00 3.82
9 10 1.536943 GCAACGAGAGGGGAGAGTGT 61.537 60.000 0.00 0.00 0.00 3.55
10 11 1.216710 GCAACGAGAGGGGAGAGTG 59.783 63.158 0.00 0.00 0.00 3.51
11 12 0.331954 TAGCAACGAGAGGGGAGAGT 59.668 55.000 0.00 0.00 0.00 3.24
12 13 1.339610 CATAGCAACGAGAGGGGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
13 14 1.403814 CATAGCAACGAGAGGGGAGA 58.596 55.000 0.00 0.00 0.00 3.71
14 15 0.249657 GCATAGCAACGAGAGGGGAG 60.250 60.000 0.00 0.00 0.00 4.30
15 16 0.975556 TGCATAGCAACGAGAGGGGA 60.976 55.000 0.00 0.00 34.76 4.81
16 17 0.107456 ATGCATAGCAACGAGAGGGG 59.893 55.000 0.00 0.00 43.62 4.79
17 18 1.202568 TGATGCATAGCAACGAGAGGG 60.203 52.381 0.00 0.00 43.62 4.30
18 19 1.863454 GTGATGCATAGCAACGAGAGG 59.137 52.381 0.00 0.00 43.62 3.69
19 20 1.863454 GGTGATGCATAGCAACGAGAG 59.137 52.381 0.00 0.00 43.62 3.20
20 21 1.206849 TGGTGATGCATAGCAACGAGA 59.793 47.619 0.00 0.00 43.62 4.04
21 22 1.655484 TGGTGATGCATAGCAACGAG 58.345 50.000 0.00 0.00 43.62 4.18
22 23 1.941975 CATGGTGATGCATAGCAACGA 59.058 47.619 0.00 0.00 43.62 3.85
23 24 1.941975 TCATGGTGATGCATAGCAACG 59.058 47.619 0.00 1.35 43.62 4.10
24 25 3.057736 GGATCATGGTGATGCATAGCAAC 60.058 47.826 0.00 0.00 43.55 4.17
25 26 3.151554 GGATCATGGTGATGCATAGCAA 58.848 45.455 0.00 0.00 43.55 3.91
26 27 2.374170 AGGATCATGGTGATGCATAGCA 59.626 45.455 12.83 4.86 46.03 3.49
27 28 2.747989 CAGGATCATGGTGATGCATAGC 59.252 50.000 12.83 0.00 46.03 2.97
28 29 3.751698 CACAGGATCATGGTGATGCATAG 59.248 47.826 12.66 5.87 46.03 2.23
29 30 3.136992 ACACAGGATCATGGTGATGCATA 59.863 43.478 12.66 0.00 46.03 3.14
30 31 2.092049 ACACAGGATCATGGTGATGCAT 60.092 45.455 12.66 0.00 46.03 3.96
31 32 1.282738 ACACAGGATCATGGTGATGCA 59.717 47.619 12.66 0.00 46.03 3.96
32 33 1.674441 CACACAGGATCATGGTGATGC 59.326 52.381 18.31 3.59 44.29 3.91
33 34 2.681344 CACACACAGGATCATGGTGATG 59.319 50.000 25.47 18.22 37.20 3.07
34 35 2.942752 GCACACACAGGATCATGGTGAT 60.943 50.000 25.47 13.21 40.34 3.06
35 36 1.611410 GCACACACAGGATCATGGTGA 60.611 52.381 25.47 0.00 36.42 4.02
36 37 0.806868 GCACACACAGGATCATGGTG 59.193 55.000 20.27 20.27 38.47 4.17
37 38 0.674581 CGCACACACAGGATCATGGT 60.675 55.000 12.66 4.08 0.00 3.55
38 39 0.674581 ACGCACACACAGGATCATGG 60.675 55.000 12.66 3.43 0.00 3.66
39 40 1.929169 CTACGCACACACAGGATCATG 59.071 52.381 5.68 5.68 0.00 3.07
40 41 1.134699 CCTACGCACACACAGGATCAT 60.135 52.381 0.00 0.00 0.00 2.45
41 42 0.246360 CCTACGCACACACAGGATCA 59.754 55.000 0.00 0.00 0.00 2.92
42 43 0.530744 TCCTACGCACACACAGGATC 59.469 55.000 0.00 0.00 32.20 3.36
43 44 0.973632 TTCCTACGCACACACAGGAT 59.026 50.000 0.00 0.00 37.06 3.24
44 45 0.753867 TTTCCTACGCACACACAGGA 59.246 50.000 0.00 0.00 35.38 3.86
45 46 1.808411 ATTTCCTACGCACACACAGG 58.192 50.000 0.00 0.00 0.00 4.00
46 47 3.896648 AAATTTCCTACGCACACACAG 57.103 42.857 0.00 0.00 0.00 3.66
47 48 4.640789 AAAAATTTCCTACGCACACACA 57.359 36.364 0.00 0.00 0.00 3.72
74 75 8.952278 GGTGATATTTGTTGGTGAACATAGTAA 58.048 33.333 0.00 0.00 41.77 2.24
75 76 8.103935 TGGTGATATTTGTTGGTGAACATAGTA 58.896 33.333 0.00 0.00 41.77 1.82
76 77 6.945435 TGGTGATATTTGTTGGTGAACATAGT 59.055 34.615 0.00 0.00 41.77 2.12
77 78 7.389803 TGGTGATATTTGTTGGTGAACATAG 57.610 36.000 0.00 0.00 41.77 2.23
78 79 7.147932 CCATGGTGATATTTGTTGGTGAACATA 60.148 37.037 2.57 0.00 41.77 2.29
79 80 6.351202 CCATGGTGATATTTGTTGGTGAACAT 60.351 38.462 2.57 0.00 41.77 2.71
80 81 5.047448 CCATGGTGATATTTGTTGGTGAACA 60.047 40.000 2.57 0.00 40.45 3.18
81 82 5.410067 CCATGGTGATATTTGTTGGTGAAC 58.590 41.667 2.57 0.00 0.00 3.18
82 83 4.081752 GCCATGGTGATATTTGTTGGTGAA 60.082 41.667 14.67 0.00 0.00 3.18
83 84 3.446873 GCCATGGTGATATTTGTTGGTGA 59.553 43.478 14.67 0.00 0.00 4.02
84 85 3.448301 AGCCATGGTGATATTTGTTGGTG 59.552 43.478 14.67 0.00 0.00 4.17
85 86 3.448301 CAGCCATGGTGATATTTGTTGGT 59.552 43.478 14.67 0.00 32.22 3.67
86 87 3.181473 CCAGCCATGGTGATATTTGTTGG 60.181 47.826 14.67 0.00 42.17 3.77
87 88 4.049546 CCAGCCATGGTGATATTTGTTG 57.950 45.455 14.67 0.00 42.17 3.33
99 100 5.788313 CGTAAGTATTTCGTCCAGCCATGG 61.788 50.000 7.63 7.63 37.70 3.66
100 101 3.245284 CGTAAGTATTTCGTCCAGCCATG 59.755 47.826 0.00 0.00 34.05 3.66
101 102 3.454375 CGTAAGTATTTCGTCCAGCCAT 58.546 45.455 0.00 0.00 34.05 4.40
102 103 2.883574 CGTAAGTATTTCGTCCAGCCA 58.116 47.619 0.00 0.00 34.05 4.75
103 104 1.591619 GCGTAAGTATTTCGTCCAGCC 59.408 52.381 0.00 0.00 41.12 4.85
104 105 1.591619 GGCGTAAGTATTTCGTCCAGC 59.408 52.381 0.00 0.00 41.12 4.85
105 106 2.883574 TGGCGTAAGTATTTCGTCCAG 58.116 47.619 0.00 0.00 42.95 3.86
106 107 3.255725 CTTGGCGTAAGTATTTCGTCCA 58.744 45.455 0.00 0.00 42.95 4.02
107 108 3.920112 CTTGGCGTAAGTATTTCGTCC 57.080 47.619 0.00 0.00 42.95 4.79
117 118 2.572191 TATGGACGACTTGGCGTAAG 57.428 50.000 0.00 0.85 45.72 2.34
118 119 2.609350 GTTATGGACGACTTGGCGTAA 58.391 47.619 0.00 0.00 45.72 3.18
119 120 1.135024 GGTTATGGACGACTTGGCGTA 60.135 52.381 0.00 0.00 45.72 4.42
121 122 0.108329 AGGTTATGGACGACTTGGCG 60.108 55.000 0.00 0.00 37.29 5.69
122 123 1.653151 GAGGTTATGGACGACTTGGC 58.347 55.000 0.00 0.00 0.00 4.52
123 124 1.134491 GGGAGGTTATGGACGACTTGG 60.134 57.143 0.00 0.00 0.00 3.61
124 125 1.553248 TGGGAGGTTATGGACGACTTG 59.447 52.381 0.00 0.00 0.00 3.16
125 126 1.946984 TGGGAGGTTATGGACGACTT 58.053 50.000 0.00 0.00 0.00 3.01
126 127 1.831736 CTTGGGAGGTTATGGACGACT 59.168 52.381 0.00 0.00 0.00 4.18
127 128 1.742750 GCTTGGGAGGTTATGGACGAC 60.743 57.143 0.00 0.00 0.00 4.34
128 129 0.539986 GCTTGGGAGGTTATGGACGA 59.460 55.000 0.00 0.00 0.00 4.20
129 130 0.463833 GGCTTGGGAGGTTATGGACG 60.464 60.000 0.00 0.00 0.00 4.79
130 131 0.623723 TGGCTTGGGAGGTTATGGAC 59.376 55.000 0.00 0.00 0.00 4.02
131 132 1.494721 GATGGCTTGGGAGGTTATGGA 59.505 52.381 0.00 0.00 0.00 3.41
132 133 1.479389 GGATGGCTTGGGAGGTTATGG 60.479 57.143 0.00 0.00 0.00 2.74
133 134 1.215173 TGGATGGCTTGGGAGGTTATG 59.785 52.381 0.00 0.00 0.00 1.90
134 135 1.607225 TGGATGGCTTGGGAGGTTAT 58.393 50.000 0.00 0.00 0.00 1.89
135 136 1.494721 GATGGATGGCTTGGGAGGTTA 59.505 52.381 0.00 0.00 0.00 2.85
136 137 0.259938 GATGGATGGCTTGGGAGGTT 59.740 55.000 0.00 0.00 0.00 3.50
137 138 0.920763 TGATGGATGGCTTGGGAGGT 60.921 55.000 0.00 0.00 0.00 3.85
138 139 0.178998 CTGATGGATGGCTTGGGAGG 60.179 60.000 0.00 0.00 0.00 4.30
139 140 0.822532 GCTGATGGATGGCTTGGGAG 60.823 60.000 0.00 0.00 0.00 4.30
140 141 1.228228 GCTGATGGATGGCTTGGGA 59.772 57.895 0.00 0.00 0.00 4.37
141 142 0.822532 GAGCTGATGGATGGCTTGGG 60.823 60.000 0.00 0.00 36.37 4.12
142 143 0.106868 TGAGCTGATGGATGGCTTGG 60.107 55.000 0.00 0.00 36.37 3.61
143 144 1.982660 ATGAGCTGATGGATGGCTTG 58.017 50.000 0.00 0.00 36.37 4.01
144 145 2.224719 GGTATGAGCTGATGGATGGCTT 60.225 50.000 0.00 0.00 36.37 4.35
145 146 1.350351 GGTATGAGCTGATGGATGGCT 59.650 52.381 0.00 0.00 39.16 4.75
146 147 1.072806 TGGTATGAGCTGATGGATGGC 59.927 52.381 0.00 0.00 0.00 4.40
147 148 2.371179 AGTGGTATGAGCTGATGGATGG 59.629 50.000 0.00 0.00 0.00 3.51
148 149 3.766068 AGTGGTATGAGCTGATGGATG 57.234 47.619 0.00 0.00 0.00 3.51
149 150 4.039730 GTGTAGTGGTATGAGCTGATGGAT 59.960 45.833 0.00 0.00 0.00 3.41
150 151 3.384789 GTGTAGTGGTATGAGCTGATGGA 59.615 47.826 0.00 0.00 0.00 3.41
154 155 4.023291 TCATGTGTAGTGGTATGAGCTGA 58.977 43.478 0.00 0.00 0.00 4.26
157 158 5.011090 TCTTCATGTGTAGTGGTATGAGC 57.989 43.478 0.00 0.00 31.85 4.26
163 164 2.979678 ACCCTTCTTCATGTGTAGTGGT 59.020 45.455 0.00 0.00 0.00 4.16
166 167 4.348168 AGAACACCCTTCTTCATGTGTAGT 59.652 41.667 0.00 0.00 40.83 2.73
169 170 3.480470 CAGAACACCCTTCTTCATGTGT 58.520 45.455 0.00 0.00 43.36 3.72
172 173 2.227388 GTGCAGAACACCCTTCTTCATG 59.773 50.000 0.00 0.00 44.02 3.07
192 193 8.140112 AGCCCTTATAATCTTAATGATCTCGT 57.860 34.615 0.00 0.00 33.57 4.18
193 194 9.442047 AAAGCCCTTATAATCTTAATGATCTCG 57.558 33.333 0.00 0.00 33.57 4.04
196 197 9.746457 AGGAAAGCCCTTATAATCTTAATGATC 57.254 33.333 0.00 0.00 44.85 2.92
201 202 8.955794 ACCATAGGAAAGCCCTTATAATCTTAA 58.044 33.333 0.00 0.00 44.85 1.85
208 209 4.597507 CCAGACCATAGGAAAGCCCTTATA 59.402 45.833 0.00 0.00 44.85 0.98
209 210 3.395941 CCAGACCATAGGAAAGCCCTTAT 59.604 47.826 0.00 0.00 44.85 1.73
210 211 2.777692 CCAGACCATAGGAAAGCCCTTA 59.222 50.000 0.00 0.00 44.85 2.69
217 218 1.702401 TGTGTGCCAGACCATAGGAAA 59.298 47.619 0.00 0.00 0.00 3.13
223 224 0.538057 CCTTGTGTGTGCCAGACCAT 60.538 55.000 0.00 0.00 0.00 3.55
225 226 0.751643 AACCTTGTGTGTGCCAGACC 60.752 55.000 0.00 0.00 0.00 3.85
227 228 2.719531 TTAACCTTGTGTGTGCCAGA 57.280 45.000 0.00 0.00 0.00 3.86
230 231 2.228822 CTCCATTAACCTTGTGTGTGCC 59.771 50.000 0.00 0.00 0.00 5.01
231 232 2.228822 CCTCCATTAACCTTGTGTGTGC 59.771 50.000 0.00 0.00 0.00 4.57
235 236 5.279456 GCATTTTCCTCCATTAACCTTGTGT 60.279 40.000 0.00 0.00 0.00 3.72
236 237 5.170748 GCATTTTCCTCCATTAACCTTGTG 58.829 41.667 0.00 0.00 0.00 3.33
244 245 5.185635 CCTCACTTTGCATTTTCCTCCATTA 59.814 40.000 0.00 0.00 0.00 1.90
258 259 1.815003 CAATCTCCCACCTCACTTTGC 59.185 52.381 0.00 0.00 0.00 3.68
259 260 2.816087 CACAATCTCCCACCTCACTTTG 59.184 50.000 0.00 0.00 0.00 2.77
263 264 1.813513 CACACAATCTCCCACCTCAC 58.186 55.000 0.00 0.00 0.00 3.51
267 268 0.962356 CCTGCACACAATCTCCCACC 60.962 60.000 0.00 0.00 0.00 4.61
268 269 1.589716 GCCTGCACACAATCTCCCAC 61.590 60.000 0.00 0.00 0.00 4.61
270 271 2.048603 GGCCTGCACACAATCTCCC 61.049 63.158 0.00 0.00 0.00 4.30
276 277 0.395586 AGAAGTTGGCCTGCACACAA 60.396 50.000 3.32 0.00 0.00 3.33
277 278 0.819259 GAGAAGTTGGCCTGCACACA 60.819 55.000 3.32 0.00 0.00 3.72
292 293 1.684734 GCCTAGACCACCCGGAGAA 60.685 63.158 0.73 0.00 35.59 2.87
295 296 1.760875 GATGCCTAGACCACCCGGA 60.761 63.158 0.73 0.00 35.59 5.14
296 297 2.808206 GGATGCCTAGACCACCCGG 61.808 68.421 0.00 0.00 38.77 5.73
297 298 1.762460 AGGATGCCTAGACCACCCG 60.762 63.158 0.00 0.00 28.47 5.28
305 306 1.139853 GTCCAACTCCAGGATGCCTAG 59.860 57.143 0.00 0.00 37.52 3.02
307 308 0.842030 TGTCCAACTCCAGGATGCCT 60.842 55.000 0.00 0.00 37.52 4.75
319 320 1.546029 GCAGGGGAGAATTTGTCCAAC 59.454 52.381 14.02 6.65 35.57 3.77
320 321 1.549950 GGCAGGGGAGAATTTGTCCAA 60.550 52.381 14.02 0.00 35.57 3.53
321 322 0.039618 GGCAGGGGAGAATTTGTCCA 59.960 55.000 14.02 0.00 35.57 4.02
322 323 0.684479 GGGCAGGGGAGAATTTGTCC 60.684 60.000 3.99 3.99 0.00 4.02
336 337 1.174712 CCAACACAACCTCAGGGCAG 61.175 60.000 0.00 0.00 35.63 4.85
343 344 0.755327 ACCAAGGCCAACACAACCTC 60.755 55.000 5.01 0.00 31.86 3.85
350 351 2.391130 ACTCCCACCAAGGCCAACA 61.391 57.895 5.01 0.00 35.39 3.33
351 352 1.903404 CACTCCCACCAAGGCCAAC 60.903 63.158 5.01 0.00 35.39 3.77
352 353 2.520458 CACTCCCACCAAGGCCAA 59.480 61.111 5.01 0.00 35.39 4.52
355 356 1.303643 CTTCCACTCCCACCAAGGC 60.304 63.158 0.00 0.00 35.39 4.35
379 380 1.675641 CCCAACCCAAGCTCTTCGG 60.676 63.158 0.00 0.00 0.00 4.30
380 381 2.335712 GCCCAACCCAAGCTCTTCG 61.336 63.158 0.00 0.00 0.00 3.79
382 383 0.329596 CTAGCCCAACCCAAGCTCTT 59.670 55.000 0.00 0.00 38.06 2.85
406 407 1.627864 TGTCCTCATCGTCACAAGGA 58.372 50.000 0.00 0.00 35.56 3.36
419 420 6.292150 CCTTATAGAAAAGGTCCATGTCCTC 58.708 44.000 7.07 0.00 41.06 3.71
421 422 4.822350 GCCTTATAGAAAAGGTCCATGTCC 59.178 45.833 4.67 0.00 46.61 4.02
423 424 4.793201 GGCCTTATAGAAAAGGTCCATGT 58.207 43.478 0.00 0.00 44.08 3.21
431 432 2.864343 CGGACGTGGCCTTATAGAAAAG 59.136 50.000 3.32 0.00 0.00 2.27
436 437 0.742505 TGACGGACGTGGCCTTATAG 59.257 55.000 3.32 0.00 0.00 1.31
437 438 0.457035 GTGACGGACGTGGCCTTATA 59.543 55.000 3.32 0.00 0.00 0.98
439 440 2.652530 GTGACGGACGTGGCCTTA 59.347 61.111 3.32 0.00 0.00 2.69
448 449 0.527817 CATCCCTAAGCGTGACGGAC 60.528 60.000 7.25 0.00 0.00 4.79
452 453 0.105039 CTCCCATCCCTAAGCGTGAC 59.895 60.000 0.00 0.00 0.00 3.67
457 458 1.134068 GTTGTCCTCCCATCCCTAAGC 60.134 57.143 0.00 0.00 0.00 3.09
461 462 0.477597 TTGGTTGTCCTCCCATCCCT 60.478 55.000 0.00 0.00 34.23 4.20
463 464 0.698818 ACTTGGTTGTCCTCCCATCC 59.301 55.000 0.00 0.00 34.23 3.51
466 467 2.383855 CAAAACTTGGTTGTCCTCCCA 58.616 47.619 0.00 0.00 34.23 4.37
509 510 2.294512 GTGCAATATCCTTAGGCTTGGC 59.705 50.000 0.00 0.00 0.00 4.52
510 511 2.887152 GGTGCAATATCCTTAGGCTTGG 59.113 50.000 0.00 0.00 0.00 3.61
517 518 4.242811 AGATGGAGGGTGCAATATCCTTA 58.757 43.478 12.18 2.11 32.79 2.69
527 528 1.519455 CGTCGAAGATGGAGGGTGC 60.519 63.158 0.00 0.00 40.43 5.01
538 539 3.438087 TGGTAAACCTAGAGACGTCGAAG 59.562 47.826 10.46 8.74 36.82 3.79
542 543 4.021632 ACCTTTGGTAAACCTAGAGACGTC 60.022 45.833 7.70 7.70 32.11 4.34
543 544 3.899980 ACCTTTGGTAAACCTAGAGACGT 59.100 43.478 0.02 0.00 32.11 4.34
545 546 4.454847 GCAACCTTTGGTAAACCTAGAGAC 59.545 45.833 0.02 0.00 33.12 3.36
550 551 3.140623 GACGCAACCTTTGGTAAACCTA 58.859 45.455 0.02 0.00 33.12 3.08
551 552 1.951602 GACGCAACCTTTGGTAAACCT 59.048 47.619 0.02 0.00 33.12 3.50
556 557 2.054232 TTTGGACGCAACCTTTGGTA 57.946 45.000 0.00 0.00 33.12 3.25
559 560 5.558083 GCTTTTAATTTGGACGCAACCTTTG 60.558 40.000 0.00 0.00 0.00 2.77
566 567 4.082517 TGCATAGCTTTTAATTTGGACGCA 60.083 37.500 0.00 0.00 0.00 5.24
576 577 2.413502 CGCCGTTGTGCATAGCTTTTAA 60.414 45.455 0.00 0.00 0.00 1.52
577 578 1.129624 CGCCGTTGTGCATAGCTTTTA 59.870 47.619 0.00 0.00 0.00 1.52
578 579 0.109781 CGCCGTTGTGCATAGCTTTT 60.110 50.000 0.00 0.00 0.00 2.27
579 580 0.953471 TCGCCGTTGTGCATAGCTTT 60.953 50.000 0.00 0.00 0.00 3.51
580 581 1.375396 TCGCCGTTGTGCATAGCTT 60.375 52.632 0.00 0.00 0.00 3.74
581 582 2.100631 GTCGCCGTTGTGCATAGCT 61.101 57.895 0.00 0.00 0.00 3.32
582 583 2.100631 AGTCGCCGTTGTGCATAGC 61.101 57.895 0.00 0.00 0.00 2.97
583 584 1.695893 CCAGTCGCCGTTGTGCATAG 61.696 60.000 0.00 0.00 0.00 2.23
584 585 1.739929 CCAGTCGCCGTTGTGCATA 60.740 57.895 0.00 0.00 0.00 3.14
588 589 3.041940 GACCCAGTCGCCGTTGTG 61.042 66.667 0.00 0.00 0.00 3.33
596 597 4.082523 ATGTGCCGGACCCAGTCG 62.083 66.667 5.05 0.00 32.65 4.18
597 598 2.125106 GATGTGCCGGACCCAGTC 60.125 66.667 5.05 0.00 0.00 3.51
598 599 2.525124 TTGATGTGCCGGACCCAGT 61.525 57.895 5.05 0.00 0.00 4.00
599 600 2.040544 GTTGATGTGCCGGACCCAG 61.041 63.158 5.05 0.00 0.00 4.45
605 606 2.040544 GGAGGTGTTGATGTGCCGG 61.041 63.158 0.00 0.00 0.00 6.13
608 609 3.005684 TGATTTTGGAGGTGTTGATGTGC 59.994 43.478 0.00 0.00 0.00 4.57
610 611 3.573967 GGTGATTTTGGAGGTGTTGATGT 59.426 43.478 0.00 0.00 0.00 3.06
614 615 2.035832 GGTGGTGATTTTGGAGGTGTTG 59.964 50.000 0.00 0.00 0.00 3.33
615 616 2.316108 GGTGGTGATTTTGGAGGTGTT 58.684 47.619 0.00 0.00 0.00 3.32
620 621 0.240945 GTGCGGTGGTGATTTTGGAG 59.759 55.000 0.00 0.00 0.00 3.86
621 622 0.466372 TGTGCGGTGGTGATTTTGGA 60.466 50.000 0.00 0.00 0.00 3.53
626 627 2.192664 TATGTTGTGCGGTGGTGATT 57.807 45.000 0.00 0.00 0.00 2.57
627 628 2.418368 ATATGTTGTGCGGTGGTGAT 57.582 45.000 0.00 0.00 0.00 3.06
629 630 3.296322 AAAATATGTTGTGCGGTGGTG 57.704 42.857 0.00 0.00 0.00 4.17
633 634 4.846779 ACTCAAAAATATGTTGTGCGGT 57.153 36.364 0.00 0.00 0.00 5.68
637 638 5.116983 GCCACGAACTCAAAAATATGTTGTG 59.883 40.000 0.00 0.00 0.00 3.33
638 639 5.009610 AGCCACGAACTCAAAAATATGTTGT 59.990 36.000 0.00 0.00 0.00 3.32
644 645 4.690748 CAGAGAGCCACGAACTCAAAAATA 59.309 41.667 0.00 0.00 36.58 1.40
648 649 1.270305 CCAGAGAGCCACGAACTCAAA 60.270 52.381 0.00 0.00 36.58 2.69
650 651 1.536073 CCCAGAGAGCCACGAACTCA 61.536 60.000 0.00 0.00 36.58 3.41
653 654 1.216710 CTCCCAGAGAGCCACGAAC 59.783 63.158 0.00 0.00 35.31 3.95
656 657 1.515020 CTTCTCCCAGAGAGCCACG 59.485 63.158 0.00 0.00 42.90 4.94
667 668 0.623723 TACAATGGCCACCTTCTCCC 59.376 55.000 8.16 0.00 0.00 4.30
673 674 0.322816 CAGCTGTACAATGGCCACCT 60.323 55.000 8.16 0.00 0.00 4.00
675 676 1.243342 TGCAGCTGTACAATGGCCAC 61.243 55.000 8.16 0.00 0.00 5.01
681 682 1.611673 GGTGTCCTGCAGCTGTACAAT 60.612 52.381 16.64 0.00 41.99 2.71
682 683 0.250295 GGTGTCCTGCAGCTGTACAA 60.250 55.000 16.64 0.00 41.99 2.41
683 684 1.371183 GGTGTCCTGCAGCTGTACA 59.629 57.895 16.64 11.82 41.99 2.90
686 687 2.111878 GTGGTGTCCTGCAGCTGT 59.888 61.111 16.64 0.00 45.23 4.40
695 696 1.299976 GTGATCTGGGGTGGTGTCC 59.700 63.158 0.00 0.00 0.00 4.02
698 699 1.272092 ACAATGTGATCTGGGGTGGTG 60.272 52.381 0.00 0.00 0.00 4.17
699 700 1.075601 ACAATGTGATCTGGGGTGGT 58.924 50.000 0.00 0.00 0.00 4.16
700 701 2.220653 AACAATGTGATCTGGGGTGG 57.779 50.000 0.00 0.00 0.00 4.61
704 705 2.669113 CGTGCAAACAATGTGATCTGGG 60.669 50.000 0.00 0.00 0.00 4.45
707 708 1.881973 AGCGTGCAAACAATGTGATCT 59.118 42.857 0.00 0.00 0.00 2.75
710 711 4.730324 GCATATAGCGTGCAAACAATGTGA 60.730 41.667 0.00 0.00 42.08 3.58
711 712 3.483196 GCATATAGCGTGCAAACAATGTG 59.517 43.478 0.00 0.00 42.08 3.21
712 713 3.694734 GCATATAGCGTGCAAACAATGT 58.305 40.909 0.00 0.00 42.08 2.71
728 729 4.800914 GCATCGTAAACTCCAGAGGCATAT 60.801 45.833 0.00 0.00 39.77 1.78
729 730 3.492656 GCATCGTAAACTCCAGAGGCATA 60.493 47.826 0.00 0.00 39.77 3.14
732 733 1.291132 GCATCGTAAACTCCAGAGGC 58.709 55.000 0.00 0.00 33.39 4.70
733 734 1.207089 TGGCATCGTAAACTCCAGAGG 59.793 52.381 0.00 0.00 0.00 3.69
737 738 0.981183 AGGTGGCATCGTAAACTCCA 59.019 50.000 0.00 0.00 0.00 3.86
740 741 0.108329 CCGAGGTGGCATCGTAAACT 60.108 55.000 9.39 0.00 38.50 2.66
759 760 0.968393 TCAAATTGGGCCCGGTAAGC 60.968 55.000 19.37 0.00 0.00 3.09
761 762 1.006043 TCATCAAATTGGGCCCGGTAA 59.994 47.619 19.37 6.36 0.00 2.85
773 774 5.948162 AGTTGTAGGAGCAATGTCATCAAAT 59.052 36.000 0.00 0.00 0.00 2.32
779 780 5.675684 TCATAGTTGTAGGAGCAATGTCA 57.324 39.130 0.00 0.00 0.00 3.58
783 784 4.227300 TGGGTTCATAGTTGTAGGAGCAAT 59.773 41.667 0.00 0.00 0.00 3.56
806 807 1.484653 GCCCAGTTTTTCCAAACCAGT 59.515 47.619 0.00 0.00 43.08 4.00
807 808 1.202639 GGCCCAGTTTTTCCAAACCAG 60.203 52.381 0.00 0.00 43.08 4.00
812 813 0.030603 AAGGGGCCCAGTTTTTCCAA 60.031 50.000 27.72 0.00 0.00 3.53
818 819 0.030603 TTTTGGAAGGGGCCCAGTTT 60.031 50.000 27.72 14.95 34.77 2.66
822 823 1.917787 GCATTTTGGAAGGGGCCCA 60.918 57.895 27.72 1.05 0.00 5.36
826 827 6.625520 GCAAATATTTTGCATTTTGGAAGGGG 60.626 38.462 17.54 0.00 44.34 4.79
840 841 3.000523 GCACGAGCCATGCAAATATTTTG 59.999 43.478 0.00 0.00 42.88 2.44
843 844 2.026641 AGCACGAGCCATGCAAATATT 58.973 42.857 0.00 0.00 45.92 1.28
846 847 0.171903 GAAGCACGAGCCATGCAAAT 59.828 50.000 0.00 0.00 45.92 2.32
850 851 1.136147 CTTGAAGCACGAGCCATGC 59.864 57.895 0.00 0.00 43.56 4.06
858 859 3.129462 TCCAGACTCTATCTTGAAGCACG 59.871 47.826 0.00 0.00 34.41 5.34
876 877 1.067060 TGCAATCTATCGGTCGTCCAG 59.933 52.381 0.00 0.00 0.00 3.86
882 883 1.541233 CCCCACTGCAATCTATCGGTC 60.541 57.143 0.00 0.00 0.00 4.79
885 886 1.942657 CAACCCCACTGCAATCTATCG 59.057 52.381 0.00 0.00 0.00 2.92
888 889 0.323360 GCCAACCCCACTGCAATCTA 60.323 55.000 0.00 0.00 0.00 1.98
892 893 3.686098 TTGGCCAACCCCACTGCAA 62.686 57.895 16.05 0.00 33.82 4.08
897 898 1.760480 ACAGTTTGGCCAACCCCAC 60.760 57.895 20.35 14.13 35.77 4.61
898 899 1.760086 CACAGTTTGGCCAACCCCA 60.760 57.895 20.35 0.00 35.77 4.96
912 916 0.250640 AGAGCTGGCAAACTCCACAG 60.251 55.000 12.26 0.00 33.18 3.66
915 919 1.601759 GCAGAGCTGGCAAACTCCA 60.602 57.895 12.26 0.00 33.18 3.86
924 928 0.959372 CCTGGACTTTGCAGAGCTGG 60.959 60.000 3.74 0.00 38.14 4.85
927 931 0.676151 CTCCCTGGACTTTGCAGAGC 60.676 60.000 3.74 0.00 38.14 4.09
930 934 0.689623 ACTCTCCCTGGACTTTGCAG 59.310 55.000 0.00 0.00 35.43 4.41
971 975 2.408022 GCACGGAGTATCGACGCT 59.592 61.111 0.00 0.00 41.61 5.07
972 976 3.017314 CGCACGGAGTATCGACGC 61.017 66.667 0.00 0.00 41.61 5.19
973 977 2.983761 ATGCGCACGGAGTATCGACG 62.984 60.000 14.90 0.00 41.61 5.12
975 979 1.008881 GATGCGCACGGAGTATCGA 60.009 57.895 14.90 0.00 41.61 3.59
978 982 1.068083 CCAGATGCGCACGGAGTAT 59.932 57.895 14.90 0.00 41.61 2.12
985 989 3.728474 CATCCTCCAGATGCGCAC 58.272 61.111 14.90 7.11 45.76 5.34
993 997 3.420300 CAGGATTGGATCATCCTCCAG 57.580 52.381 13.35 2.86 45.80 3.86
1007 1011 0.779997 AACCAGACCAAGCCAGGATT 59.220 50.000 0.00 0.00 0.00 3.01
1019 1023 1.603739 GGGTCCAAGCCAACCAGAC 60.604 63.158 0.00 0.00 37.28 3.51
1025 1029 2.852075 AGTCGGGGTCCAAGCCAA 60.852 61.111 0.00 0.00 37.54 4.52
1026 1030 3.319198 GAGTCGGGGTCCAAGCCA 61.319 66.667 0.00 0.00 37.54 4.75
1030 1034 1.152204 TCCAAGAGTCGGGGTCCAA 60.152 57.895 4.34 0.00 0.00 3.53
1031 1035 1.609501 CTCCAAGAGTCGGGGTCCA 60.610 63.158 4.34 0.00 0.00 4.02
1032 1036 3.020237 GCTCCAAGAGTCGGGGTCC 62.020 68.421 4.34 0.00 31.39 4.46
1033 1037 2.579738 GCTCCAAGAGTCGGGGTC 59.420 66.667 4.34 0.00 31.39 4.46
1035 1039 4.821589 GCGCTCCAAGAGTCGGGG 62.822 72.222 0.00 0.89 32.82 5.73
1038 1042 4.785512 AGCGCGCTCCAAGAGTCG 62.786 66.667 31.32 4.72 34.33 4.18
1039 1043 2.433318 AAGCGCGCTCCAAGAGTC 60.433 61.111 36.57 0.00 31.39 3.36
1040 1044 2.740055 CAAGCGCGCTCCAAGAGT 60.740 61.111 36.57 14.68 31.39 3.24
1052 1056 2.069273 ACTCCTTGATCGAAACAAGCG 58.931 47.619 22.03 18.06 42.03 4.68
1053 1057 2.160417 CCACTCCTTGATCGAAACAAGC 59.840 50.000 22.03 0.00 42.03 4.01
1054 1058 3.187227 CACCACTCCTTGATCGAAACAAG 59.813 47.826 21.08 21.08 42.72 3.16
1057 1061 2.076863 CCACCACTCCTTGATCGAAAC 58.923 52.381 0.00 0.00 0.00 2.78
1058 1062 1.697432 ACCACCACTCCTTGATCGAAA 59.303 47.619 0.00 0.00 0.00 3.46
1059 1063 1.275291 GACCACCACTCCTTGATCGAA 59.725 52.381 0.00 0.00 0.00 3.71
1061 1065 0.108138 GGACCACCACTCCTTGATCG 60.108 60.000 0.00 0.00 35.97 3.69
1063 1067 1.280457 GAGGACCACCACTCCTTGAT 58.720 55.000 0.00 0.00 38.35 2.57
1064 1068 2.759985 GAGGACCACCACTCCTTGA 58.240 57.895 0.00 0.00 38.35 3.02
1078 1082 2.069776 CAGGAAGGCACAAGGAGGA 58.930 57.895 0.00 0.00 0.00 3.71
1107 1111 4.090057 GAGGACAAAGCACGGCGC 62.090 66.667 6.90 0.00 42.91 6.53
1113 1117 0.693049 GAAGGAGGGAGGACAAAGCA 59.307 55.000 0.00 0.00 0.00 3.91
1117 1121 0.178891 AGCAGAAGGAGGGAGGACAA 60.179 55.000 0.00 0.00 0.00 3.18
1128 1132 1.230635 CCCACACGACAAGCAGAAGG 61.231 60.000 0.00 0.00 0.00 3.46
1131 1135 1.367471 CTCCCACACGACAAGCAGA 59.633 57.895 0.00 0.00 0.00 4.26
1137 1141 2.421314 CACAGCTCCCACACGACA 59.579 61.111 0.00 0.00 0.00 4.35
1138 1142 2.357517 CCACAGCTCCCACACGAC 60.358 66.667 0.00 0.00 0.00 4.34
1140 1144 1.961277 GTTCCACAGCTCCCACACG 60.961 63.158 0.00 0.00 0.00 4.49
1143 1147 0.108585 TCTTGTTCCACAGCTCCCAC 59.891 55.000 0.00 0.00 0.00 4.61
1149 1153 1.668047 GCATTGCTCTTGTTCCACAGC 60.668 52.381 0.16 0.00 0.00 4.40
1150 1154 1.884579 AGCATTGCTCTTGTTCCACAG 59.115 47.619 5.03 0.00 30.62 3.66
1162 1166 2.103042 GGAAGACGCGAGCATTGCT 61.103 57.895 15.93 11.79 45.68 3.91
1166 1170 1.522355 CCATGGAAGACGCGAGCAT 60.522 57.895 15.93 0.00 0.00 3.79
1168 1172 0.811616 ATTCCATGGAAGACGCGAGC 60.812 55.000 29.98 3.96 37.56 5.03
1173 1177 2.224161 GGAGGAGATTCCATGGAAGACG 60.224 54.545 29.98 0.00 39.61 4.18
1184 1188 2.848691 CAGAAGGCATGGAGGAGATTC 58.151 52.381 0.00 0.00 0.00 2.52
1185 1189 1.133853 GCAGAAGGCATGGAGGAGATT 60.134 52.381 0.00 0.00 43.97 2.40
1186 1190 0.473326 GCAGAAGGCATGGAGGAGAT 59.527 55.000 0.00 0.00 43.97 2.75
1206 1210 1.269448 TGCTTGATTTTGGCGAAGACC 59.731 47.619 0.00 0.00 25.51 3.85
1209 1213 3.176708 CTCATGCTTGATTTTGGCGAAG 58.823 45.455 2.33 0.00 0.00 3.79
1212 1216 1.917273 CCTCATGCTTGATTTTGGCG 58.083 50.000 2.33 0.00 0.00 5.69
1224 1228 2.196319 CCAAAGGGAAGCCTCATGC 58.804 57.895 0.00 0.00 36.79 4.06
1239 1243 1.706995 TAGCACCGTCCAAACCCCAA 61.707 55.000 0.00 0.00 0.00 4.12
1241 1245 0.958876 CTTAGCACCGTCCAAACCCC 60.959 60.000 0.00 0.00 0.00 4.95
1244 1249 2.624169 TGCTTAGCACCGTCCAAAC 58.376 52.632 1.39 0.00 31.71 2.93
1270 1275 0.530744 TACTCTCGCGGCATCAAAGT 59.469 50.000 6.13 2.40 0.00 2.66
1293 1298 2.558359 AGATGCCCAGAAAAAGAAACGG 59.442 45.455 0.00 0.00 0.00 4.44
1295 1300 6.272822 ACATAGATGCCCAGAAAAAGAAAC 57.727 37.500 0.00 0.00 0.00 2.78
1296 1301 5.418840 GGACATAGATGCCCAGAAAAAGAAA 59.581 40.000 0.00 0.00 29.85 2.52
1299 1304 3.633986 GGGACATAGATGCCCAGAAAAAG 59.366 47.826 13.84 0.00 41.10 2.27
1303 1308 2.196742 AGGGACATAGATGCCCAGAA 57.803 50.000 18.41 0.00 42.72 3.02
1304 1309 3.567375 ATAGGGACATAGATGCCCAGA 57.433 47.619 18.41 10.05 42.72 3.86
1306 1311 4.763355 AGTAATAGGGACATAGATGCCCA 58.237 43.478 18.41 9.19 42.72 5.36
1307 1312 5.763876 AAGTAATAGGGACATAGATGCCC 57.236 43.478 11.82 11.82 41.48 5.36
1308 1313 6.534634 ACAAAGTAATAGGGACATAGATGCC 58.465 40.000 0.00 0.00 0.00 4.40
1309 1314 7.499232 ACAACAAAGTAATAGGGACATAGATGC 59.501 37.037 0.00 0.00 0.00 3.91
1310 1315 8.964476 ACAACAAAGTAATAGGGACATAGATG 57.036 34.615 0.00 0.00 0.00 2.90
1315 1320 9.582648 AGTTTTACAACAAAGTAATAGGGACAT 57.417 29.630 0.00 0.00 34.25 3.06
1317 1322 8.509690 GGAGTTTTACAACAAAGTAATAGGGAC 58.490 37.037 0.00 0.00 34.25 4.46
1318 1323 8.442374 AGGAGTTTTACAACAAAGTAATAGGGA 58.558 33.333 0.00 0.00 34.25 4.20
1319 1324 8.631480 AGGAGTTTTACAACAAAGTAATAGGG 57.369 34.615 0.00 0.00 34.25 3.53
1347 1352 6.534475 AAAGCTTTGCCTCATCATATTCAA 57.466 33.333 11.80 0.00 0.00 2.69
1349 1354 5.233689 GCAAAAGCTTTGCCTCATCATATTC 59.766 40.000 13.54 0.00 39.38 1.75
1353 1358 2.968675 GCAAAAGCTTTGCCTCATCAT 58.031 42.857 13.54 0.00 39.38 2.45
1490 1497 5.911280 CGATATTGTGTTCATCCAATTCAGC 59.089 40.000 0.00 0.00 33.54 4.26
1573 1584 9.880157 CCAGGTTTCATATCTCAAAAATTCAAT 57.120 29.630 0.00 0.00 0.00 2.57
1574 1585 8.313292 CCCAGGTTTCATATCTCAAAAATTCAA 58.687 33.333 0.00 0.00 0.00 2.69
1585 1596 2.736670 GGCACCCAGGTTTCATATCT 57.263 50.000 0.00 0.00 0.00 1.98
1629 1640 0.612732 CACAGGCACCCATTCCACAT 60.613 55.000 0.00 0.00 0.00 3.21
1630 1641 1.228521 CACAGGCACCCATTCCACA 60.229 57.895 0.00 0.00 0.00 4.17
1649 1660 2.332063 AATTCCAGTGCCACGGATAG 57.668 50.000 8.79 0.00 0.00 2.08
1660 1671 7.356089 TCTTATATCACACGGTAATTCCAGT 57.644 36.000 0.00 0.00 35.57 4.00
1719 1732 4.157105 GCCCGTGGTAATGTCAGTAAAAAT 59.843 41.667 0.00 0.00 0.00 1.82
1792 1809 1.807755 GCATGCTGAGGCGAGTATTCA 60.808 52.381 11.37 0.00 42.25 2.57
1806 1823 0.744414 AGGAAATACGTGCGCATGCT 60.744 50.000 28.93 17.90 43.34 3.79
1810 1827 0.036765 AAGGAGGAAATACGTGCGCA 60.037 50.000 5.66 5.66 0.00 6.09
1874 1891 3.459227 TGATGATCCACACCACACCATAT 59.541 43.478 0.00 0.00 0.00 1.78
1875 1892 2.843113 TGATGATCCACACCACACCATA 59.157 45.455 0.00 0.00 0.00 2.74
1907 1924 0.107017 AGAACCCATCAATCAGGCCG 60.107 55.000 0.00 0.00 0.00 6.13
1951 1968 1.164411 CCAGCGGCACTTGTGAATAA 58.836 50.000 1.45 0.00 0.00 1.40
1964 1981 1.078848 ACAAGCTAAGAGCCAGCGG 60.079 57.895 0.00 0.00 43.77 5.52
1999 2016 1.080705 CTTCACCACGACGAGGTCC 60.081 63.158 14.42 0.00 37.23 4.46
2002 2019 2.432628 GGCTTCACCACGACGAGG 60.433 66.667 9.97 9.97 38.86 4.63
2003 2020 2.432628 GGGCTTCACCACGACGAG 60.433 66.667 0.00 0.00 42.05 4.18
2004 2021 4.351938 CGGGCTTCACCACGACGA 62.352 66.667 0.00 0.00 42.05 4.20
2005 2022 4.351938 TCGGGCTTCACCACGACG 62.352 66.667 0.00 0.00 42.05 5.12
2006 2023 2.432628 CTCGGGCTTCACCACGAC 60.433 66.667 0.00 0.00 42.05 4.34
2007 2024 3.691342 CCTCGGGCTTCACCACGA 61.691 66.667 0.00 0.00 42.05 4.35
2034 2051 0.806492 GACGAGAACGGCTTCATCCC 60.806 60.000 0.00 0.00 45.04 3.85
2035 2052 1.140407 CGACGAGAACGGCTTCATCC 61.140 60.000 0.00 0.00 46.46 3.51
2040 2065 0.526662 AATCTCGACGAGAACGGCTT 59.473 50.000 29.68 16.86 46.46 4.35
2074 2099 9.567848 TTTGTTATTCACAACTCTGAGAAAAAC 57.432 29.630 12.44 4.96 45.54 2.43
2097 2122 6.869913 ACAACAAACAAGCTATCATCCATTTG 59.130 34.615 0.00 0.00 33.17 2.32
2217 2242 3.949885 TTGCCTCCTCCTACGCCGA 62.950 63.158 0.00 0.00 0.00 5.54
2218 2243 2.515996 TTTTGCCTCCTCCTACGCCG 62.516 60.000 0.00 0.00 0.00 6.46
2221 2246 1.270625 TGTGTTTTGCCTCCTCCTACG 60.271 52.381 0.00 0.00 0.00 3.51
2262 2287 9.428097 GATATCACATATGAGAGCACAAATACA 57.572 33.333 10.38 0.00 38.57 2.29
2263 2288 9.650539 AGATATCACATATGAGAGCACAAATAC 57.349 33.333 10.38 0.00 34.87 1.89
2264 2289 9.866798 GAGATATCACATATGAGAGCACAAATA 57.133 33.333 10.38 0.00 34.87 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.