Multiple sequence alignment - TraesCS3D01G085600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G085600 chr3D 100.000 3459 0 0 1 3459 43045095 43041637 0.000000e+00 6388.0
1 TraesCS3D01G085600 chr3B 90.547 2084 138 30 618 2680 67062840 67060795 0.000000e+00 2702.0
2 TraesCS3D01G085600 chr3B 94.555 551 27 3 1 550 67069039 67068491 0.000000e+00 848.0
3 TraesCS3D01G085600 chr3B 78.713 202 29 11 3058 3251 612112552 612112357 4.690000e-24 122.0
4 TraesCS3D01G085600 chr3B 95.312 64 3 0 3396 3459 67060109 67060046 6.110000e-18 102.0
5 TraesCS3D01G085600 chr3A 90.739 1231 65 25 712 1938 55087904 55086719 0.000000e+00 1596.0
6 TraesCS3D01G085600 chr3A 91.425 793 46 19 2015 2798 55086701 55085922 0.000000e+00 1068.0
7 TraesCS3D01G085600 chr3A 89.670 697 57 8 1 683 55088563 55087868 0.000000e+00 874.0
8 TraesCS3D01G085600 chrUn 88.312 154 15 2 1313 1464 296590452 296590300 7.630000e-42 182.0
9 TraesCS3D01G085600 chrUn 88.235 119 11 1 1346 1464 342776694 342776809 4.660000e-29 139.0
10 TraesCS3D01G085600 chr6D 88.312 154 15 2 1313 1464 2175073 2174921 7.630000e-42 182.0
11 TraesCS3D01G085600 chr6D 88.312 154 15 2 1313 1464 2181232 2181080 7.630000e-42 182.0
12 TraesCS3D01G085600 chr6B 86.275 153 17 2 1313 1464 41243917 41244066 2.760000e-36 163.0
13 TraesCS3D01G085600 chr6B 90.566 106 7 3 2212 2315 528890804 528890700 1.670000e-28 137.0
14 TraesCS3D01G085600 chr6B 90.566 106 7 3 2212 2315 528891183 528891079 1.670000e-28 137.0
15 TraesCS3D01G085600 chr6B 78.846 208 29 12 3052 3251 660098206 660098006 3.620000e-25 126.0
16 TraesCS3D01G085600 chr6B 78.680 197 31 9 3058 3247 371587601 371587409 1.690000e-23 121.0
17 TraesCS3D01G085600 chr6B 97.872 47 1 0 2409 2455 196627414 196627368 7.960000e-12 82.4
18 TraesCS3D01G085600 chr6B 94.231 52 3 0 2403 2454 259277369 259277318 2.860000e-11 80.5
19 TraesCS3D01G085600 chr2B 85.621 153 18 2 1313 1464 52233567 52233716 1.290000e-34 158.0
20 TraesCS3D01G085600 chr2B 87.050 139 15 3 1328 1463 788678042 788678180 1.660000e-33 154.0
21 TraesCS3D01G085600 chr2B 79.602 201 29 10 3058 3250 263144194 263144390 2.170000e-27 134.0
22 TraesCS3D01G085600 chr2B 78.846 208 29 12 3058 3255 371420733 371420531 3.620000e-25 126.0
23 TraesCS3D01G085600 chr2B 78.571 196 29 10 3058 3245 646965160 646965350 2.180000e-22 117.0
24 TraesCS3D01G085600 chr2B 77.157 197 31 10 3060 3248 288939580 288939390 6.110000e-18 102.0
25 TraesCS3D01G085600 chr2B 94.340 53 3 0 2403 2455 482991744 482991796 7.960000e-12 82.4
26 TraesCS3D01G085600 chr7B 80.193 207 28 10 3058 3256 354694634 354694835 3.600000e-30 143.0
27 TraesCS3D01G085600 chr7B 91.262 103 6 3 2212 2312 236021109 236021210 1.670000e-28 137.0
28 TraesCS3D01G085600 chr4A 91.262 103 6 3 2212 2312 577156196 577156297 1.670000e-28 137.0
29 TraesCS3D01G085600 chr1B 91.919 99 7 1 2215 2312 227081637 227081735 1.670000e-28 137.0
30 TraesCS3D01G085600 chr1B 79.104 201 28 11 3058 3249 250496003 250496198 3.620000e-25 126.0
31 TraesCS3D01G085600 chr1B 94.231 52 3 0 2403 2454 463582669 463582618 2.860000e-11 80.5
32 TraesCS3D01G085600 chr5B 92.553 94 6 1 2223 2315 410418975 410418882 2.170000e-27 134.0
33 TraesCS3D01G085600 chr5B 96.226 53 2 0 2403 2455 368060173 368060121 1.710000e-13 87.9
34 TraesCS3D01G085600 chr5B 94.340 53 3 0 2403 2455 431125639 431125691 7.960000e-12 82.4
35 TraesCS3D01G085600 chr4B 91.753 97 7 1 2219 2314 154270037 154270133 2.170000e-27 134.0
36 TraesCS3D01G085600 chr4B 94.340 53 3 0 2403 2455 199125782 199125730 7.960000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G085600 chr3D 43041637 43045095 3458 True 6388.000000 6388 100.000000 1 3459 1 chr3D.!!$R1 3458
1 TraesCS3D01G085600 chr3B 67060046 67062840 2794 True 1402.000000 2702 92.929500 618 3459 2 chr3B.!!$R3 2841
2 TraesCS3D01G085600 chr3B 67068491 67069039 548 True 848.000000 848 94.555000 1 550 1 chr3B.!!$R1 549
3 TraesCS3D01G085600 chr3A 55085922 55088563 2641 True 1179.333333 1596 90.611333 1 2798 3 chr3A.!!$R1 2797

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
816 838 1.001406 GGATTCAGCGAATCGGATCCT 59.999 52.381 10.75 0.0 46.47 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2774 2858 0.966179 GGGAATCGGCCAAAGTTGTT 59.034 50.0 2.24 0.0 0.0 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 1.981636 AGCCTCAGTTCCAGCTCAG 59.018 57.895 0.00 0.00 0.00 3.35
67 68 8.095792 GGACTTCAATCTCAGACATATGATCAT 58.904 37.037 13.81 13.81 0.00 2.45
70 71 9.274206 CTTCAATCTCAGACATATGATCATGTT 57.726 33.333 18.72 2.81 39.25 2.71
90 91 8.623903 TCATGTTTGATTGCATAGAAGTTATCC 58.376 33.333 0.00 0.00 0.00 2.59
234 236 2.890311 AGCATCTTCGACTCTCCCTATG 59.110 50.000 0.00 0.00 0.00 2.23
288 290 6.478344 CAGATATCACTTTGTACTCCTTCTGC 59.522 42.308 5.32 0.00 0.00 4.26
291 293 4.569943 TCACTTTGTACTCCTTCTGCATC 58.430 43.478 0.00 0.00 0.00 3.91
307 309 5.379003 TCTGCATCGAACGTTGAATAAAAC 58.621 37.500 5.00 0.00 0.00 2.43
495 499 8.680039 AAATTGATGTGAATTTTGGTGTCATT 57.320 26.923 0.00 0.00 32.70 2.57
496 500 7.894376 ATTGATGTGAATTTTGGTGTCATTC 57.106 32.000 0.00 0.00 0.00 2.67
532 536 5.304101 ACAATTTTGGTGCCATTCTCACTAA 59.696 36.000 0.00 0.00 33.96 2.24
545 549 7.657354 GCCATTCTCACTAATCATGTACATACA 59.343 37.037 8.32 0.00 40.98 2.29
567 571 5.250774 ACATAGTGTGAGATTAGGGTGGTTT 59.749 40.000 0.00 0.00 0.00 3.27
569 573 4.398319 AGTGTGAGATTAGGGTGGTTTTG 58.602 43.478 0.00 0.00 0.00 2.44
583 587 7.406916 AGGGTGGTTTTGTTTTCCTTTATTTT 58.593 30.769 0.00 0.00 0.00 1.82
607 622 6.709018 TTTCGAGAATTTCCTTTCCTTTGT 57.291 33.333 0.00 0.00 0.00 2.83
608 623 5.941948 TCGAGAATTTCCTTTCCTTTGTC 57.058 39.130 0.00 0.00 0.00 3.18
611 626 5.459536 AGAATTTCCTTTCCTTTGTCAGC 57.540 39.130 0.00 0.00 0.00 4.26
612 627 4.895297 AGAATTTCCTTTCCTTTGTCAGCA 59.105 37.500 0.00 0.00 0.00 4.41
614 629 3.576078 TTCCTTTCCTTTGTCAGCAGA 57.424 42.857 0.00 0.00 0.00 4.26
615 630 3.576078 TCCTTTCCTTTGTCAGCAGAA 57.424 42.857 0.00 0.00 0.00 3.02
616 631 3.897239 TCCTTTCCTTTGTCAGCAGAAA 58.103 40.909 0.00 0.00 0.00 2.52
622 637 5.964958 TCCTTTGTCAGCAGAAAATTAGG 57.035 39.130 0.00 0.00 0.00 2.69
631 646 1.478105 CAGAAAATTAGGGTGCTGGGC 59.522 52.381 0.00 0.00 0.00 5.36
639 654 2.356278 GGTGCTGGGCTTGGATGA 59.644 61.111 0.00 0.00 0.00 2.92
640 655 1.076485 GGTGCTGGGCTTGGATGAT 60.076 57.895 0.00 0.00 0.00 2.45
645 660 1.135721 GCTGGGCTTGGATGATGTTTC 59.864 52.381 0.00 0.00 0.00 2.78
650 665 3.367703 GGGCTTGGATGATGTTTCTGTTG 60.368 47.826 0.00 0.00 0.00 3.33
653 668 4.801891 CTTGGATGATGTTTCTGTTGTGG 58.198 43.478 0.00 0.00 0.00 4.17
655 670 4.665451 TGGATGATGTTTCTGTTGTGGAT 58.335 39.130 0.00 0.00 0.00 3.41
658 673 5.882557 GGATGATGTTTCTGTTGTGGATACT 59.117 40.000 0.00 0.00 37.61 2.12
684 699 4.344359 TGGGCCCAAAAGAAAAACATAC 57.656 40.909 26.33 0.00 0.00 2.39
685 700 3.711704 TGGGCCCAAAAGAAAAACATACA 59.288 39.130 26.33 0.00 0.00 2.29
688 703 4.749598 GGCCCAAAAGAAAAACATACACAG 59.250 41.667 0.00 0.00 0.00 3.66
703 725 8.472007 AACATACACAGAAAATTAGGGTTTGA 57.528 30.769 0.00 0.00 0.00 2.69
710 732 7.063780 CACAGAAAATTAGGGTTTGAATGATGC 59.936 37.037 0.00 0.00 0.00 3.91
752 774 1.798223 GGGCCGAAAAGAAAAACATGC 59.202 47.619 0.00 0.00 0.00 4.06
759 781 4.259770 CGAAAAGAAAAACATGCACACCAC 60.260 41.667 0.00 0.00 0.00 4.16
815 837 1.433534 GGATTCAGCGAATCGGATCC 58.566 55.000 18.45 0.00 46.47 3.36
816 838 1.001406 GGATTCAGCGAATCGGATCCT 59.999 52.381 10.75 0.00 46.47 3.24
951 973 3.782656 TCCACTAGGTTTTCCAACTCC 57.217 47.619 0.00 0.00 43.73 3.85
958 980 1.408969 GTTTTCCAACTCCCCTGCAA 58.591 50.000 0.00 0.00 0.00 4.08
1107 1130 2.127297 CCCCTCCTCCCTTTCCCA 59.873 66.667 0.00 0.00 0.00 4.37
1244 1269 1.540267 ACGTCGATGAAGCACTACACT 59.460 47.619 12.58 0.00 0.00 3.55
1259 1284 2.032681 ACTTTCCTGCCGCACTCC 59.967 61.111 0.00 0.00 0.00 3.85
1472 1497 1.481871 TCAACAGGTACCGATCTCCC 58.518 55.000 6.18 0.00 0.00 4.30
1477 1502 0.468400 AGGTACCGATCTCCCTCTGC 60.468 60.000 6.18 0.00 0.00 4.26
1480 1505 2.584236 GTACCGATCTCCCTCTGCTTA 58.416 52.381 0.00 0.00 0.00 3.09
1483 1508 2.158385 ACCGATCTCCCTCTGCTTATCT 60.158 50.000 0.00 0.00 0.00 1.98
1487 1512 5.007034 CGATCTCCCTCTGCTTATCTTCTA 58.993 45.833 0.00 0.00 0.00 2.10
1519 1546 3.197983 GTCTAGGTGATGGTAGTTTGCCT 59.802 47.826 0.00 0.00 0.00 4.75
1540 1567 5.242838 GCCTGCAGTGACTAGTATTAGATCT 59.757 44.000 13.81 0.00 0.00 2.75
1574 1601 4.565564 GTGGTGTTGGTAGTCGAATATCAC 59.434 45.833 5.14 8.25 30.82 3.06
1623 1650 9.239551 GAAACTATTCCAGTACCCAGTTTAATT 57.760 33.333 0.00 0.00 36.60 1.40
1711 1740 4.598807 TGGATGATAGCCATGTGGTAATCT 59.401 41.667 13.34 1.43 35.17 2.40
1722 1751 4.010667 TGTGGTAATCTGCTAAACGGTT 57.989 40.909 0.00 0.00 0.00 4.44
1757 1786 5.215252 TGCTTCATATTAGGCTCTACCAC 57.785 43.478 0.00 0.00 43.14 4.16
1771 1800 5.212934 GCTCTACCACTTTTACTGTTTTGC 58.787 41.667 0.00 0.00 0.00 3.68
1773 1802 6.459710 GCTCTACCACTTTTACTGTTTTGCTT 60.460 38.462 0.00 0.00 0.00 3.91
1777 1806 6.569780 ACCACTTTTACTGTTTTGCTTTAGG 58.430 36.000 0.00 0.00 0.00 2.69
1783 1812 7.820044 TTTACTGTTTTGCTTTAGGTGTTTG 57.180 32.000 0.00 0.00 0.00 2.93
1794 1824 5.186992 GCTTTAGGTGTTTGGGTAATGGATT 59.813 40.000 0.00 0.00 0.00 3.01
1799 1829 5.195756 AGGTGTTTGGGTAATGGATTATCCT 59.804 40.000 12.91 0.00 42.71 3.24
1813 1843 9.449719 AATGGATTATCCTTATTAGGTTTAGCG 57.550 33.333 12.91 0.00 42.60 4.26
1819 1849 6.303903 TCCTTATTAGGTTTAGCGGACTTT 57.696 37.500 0.00 0.00 42.60 2.66
1876 1906 4.800582 GCAGCACCTAAAATTTCTTGCCTT 60.801 41.667 8.74 0.00 0.00 4.35
1877 1907 4.687483 CAGCACCTAAAATTTCTTGCCTTG 59.313 41.667 8.74 1.34 0.00 3.61
1881 1911 6.259829 GCACCTAAAATTTCTTGCCTTGAAAA 59.740 34.615 0.00 0.00 37.05 2.29
1893 1923 2.485814 GCCTTGAAAAGCTCGATTCTGT 59.514 45.455 7.95 0.00 44.44 3.41
1900 1930 1.933247 AGCTCGATTCTGTTAGCAGC 58.067 50.000 0.97 0.00 42.29 5.25
1924 1954 5.669477 GCTGAGGAAATTCTAGTGAGTGAT 58.331 41.667 0.00 0.00 0.00 3.06
1993 2023 5.797934 GTGACGTCTGTTGATTTTGTTCAAA 59.202 36.000 17.92 0.00 37.36 2.69
2029 2059 2.724977 TCTCACTGAGTGCCTTAACG 57.275 50.000 7.93 0.00 32.98 3.18
2085 2115 8.292448 TCTTGATTTCTGTATGAACTTTGCTTC 58.708 33.333 0.00 0.00 33.88 3.86
2201 2231 1.920835 GAGGAGGGTGAACCAGGCT 60.921 63.158 1.16 0.00 43.89 4.58
2270 2300 0.403271 AGACCATTGCTGAGTGCCTT 59.597 50.000 0.00 0.00 42.00 4.35
2327 2358 4.166531 TCCAACAGGTATACCATAAACCCC 59.833 45.833 23.87 0.00 38.89 4.95
2329 2360 5.399727 CCAACAGGTATACCATAAACCCCAT 60.400 44.000 23.87 0.00 38.89 4.00
2334 2365 6.490040 CAGGTATACCATAAACCCCATTTCTG 59.510 42.308 23.87 3.68 38.89 3.02
2386 2417 2.224597 TGAGTGTGTGTGCTCATGGATT 60.225 45.455 0.00 0.00 36.89 3.01
2503 2537 2.030007 CGCTTTTGGCTGGAGATTTTGA 60.030 45.455 0.00 0.00 39.13 2.69
2505 2539 3.992427 GCTTTTGGCTGGAGATTTTGAAG 59.008 43.478 0.00 0.00 38.06 3.02
2548 2582 8.749841 ATATCTAGAACTGTTTTAGCTATGCG 57.250 34.615 11.99 0.00 0.00 4.73
2557 2591 7.645402 ACTGTTTTAGCTATGCGTTAAGTTTT 58.355 30.769 0.00 0.00 0.00 2.43
2558 2592 8.776470 ACTGTTTTAGCTATGCGTTAAGTTTTA 58.224 29.630 0.00 0.00 0.00 1.52
2559 2593 9.769093 CTGTTTTAGCTATGCGTTAAGTTTTAT 57.231 29.630 0.00 0.00 0.00 1.40
2560 2594 9.549509 TGTTTTAGCTATGCGTTAAGTTTTATG 57.450 29.630 0.00 0.00 0.00 1.90
2564 2599 7.568199 AGCTATGCGTTAAGTTTTATGGAAT 57.432 32.000 0.00 0.00 0.00 3.01
2581 2616 8.731275 TTATGGAATGAACATTTCGATGTAGT 57.269 30.769 1.56 0.00 33.81 2.73
2588 2623 3.937814 ACATTTCGATGTAGTGGCAAGA 58.062 40.909 0.00 0.00 32.14 3.02
2591 2626 1.990799 TCGATGTAGTGGCAAGAACG 58.009 50.000 0.00 0.00 0.00 3.95
2609 2644 0.877071 CGTGCCTGATGCTTGTCTTT 59.123 50.000 0.00 0.00 42.00 2.52
2610 2645 1.400629 CGTGCCTGATGCTTGTCTTTG 60.401 52.381 0.00 0.00 42.00 2.77
2618 2654 3.953612 TGATGCTTGTCTTTGTGAAACCT 59.046 39.130 0.00 0.00 34.36 3.50
2634 2670 5.940470 GTGAAACCTATTCCTGTTCAGACAT 59.060 40.000 1.00 0.00 34.72 3.06
2642 2678 7.941238 CCTATTCCTGTTCAGACATATTTGGAT 59.059 37.037 1.00 0.00 34.72 3.41
2670 2754 5.719173 TGAATGTCGATGTGTTCTGTCATA 58.281 37.500 0.00 0.00 0.00 2.15
2680 2764 8.271487 CGATGTGTTCTGTCATAATATGTCTTG 58.729 37.037 0.00 0.00 0.00 3.02
2681 2765 7.848223 TGTGTTCTGTCATAATATGTCTTGG 57.152 36.000 0.00 0.00 0.00 3.61
2682 2766 7.394016 TGTGTTCTGTCATAATATGTCTTGGT 58.606 34.615 0.00 0.00 0.00 3.67
2683 2767 7.882791 TGTGTTCTGTCATAATATGTCTTGGTT 59.117 33.333 0.00 0.00 0.00 3.67
2684 2768 8.730680 GTGTTCTGTCATAATATGTCTTGGTTT 58.269 33.333 0.00 0.00 0.00 3.27
2685 2769 8.729756 TGTTCTGTCATAATATGTCTTGGTTTG 58.270 33.333 0.00 0.00 0.00 2.93
2697 2781 6.500684 TGTCTTGGTTTGATCTATTCTTGC 57.499 37.500 0.00 0.00 0.00 4.01
2709 2793 7.800767 TGATCTATTCTTGCGAATGCTTATTC 58.199 34.615 0.00 0.00 40.04 1.75
2727 2811 7.339212 TGCTTATTCCACTTTGCAATAGTGTAT 59.661 33.333 26.02 22.06 41.08 2.29
2728 2812 7.645340 GCTTATTCCACTTTGCAATAGTGTATG 59.355 37.037 26.02 18.73 41.08 2.39
2729 2813 4.963276 TCCACTTTGCAATAGTGTATGC 57.037 40.909 26.02 0.00 41.08 3.14
2751 2835 7.800155 TGCATGCTTACTATTGCATACTTAA 57.200 32.000 20.33 0.00 46.65 1.85
2763 2847 4.669318 TGCATACTTAAGCTCTGTCGTAC 58.331 43.478 1.29 0.00 0.00 3.67
2774 2858 4.217767 AGCTCTGTCGTACTTGTCATTACA 59.782 41.667 0.00 0.00 0.00 2.41
2789 2873 3.823873 TCATTACAACAACTTTGGCCGAT 59.176 39.130 0.00 0.00 0.00 4.18
2799 2883 2.224548 ACTTTGGCCGATTCCCTATAGC 60.225 50.000 0.00 0.00 0.00 2.97
2800 2884 1.429930 TTGGCCGATTCCCTATAGCA 58.570 50.000 0.00 0.00 0.00 3.49
2801 2885 0.976641 TGGCCGATTCCCTATAGCAG 59.023 55.000 0.00 0.00 0.00 4.24
2802 2886 1.267121 GGCCGATTCCCTATAGCAGA 58.733 55.000 0.00 0.00 0.00 4.26
2804 2888 3.031736 GGCCGATTCCCTATAGCAGATA 58.968 50.000 0.00 0.00 0.00 1.98
2806 2890 4.502259 GGCCGATTCCCTATAGCAGATATG 60.502 50.000 0.00 0.00 0.00 1.78
2809 2893 5.360999 CCGATTCCCTATAGCAGATATGTCA 59.639 44.000 0.00 0.00 0.00 3.58
2810 2894 6.041409 CCGATTCCCTATAGCAGATATGTCAT 59.959 42.308 0.00 0.00 0.00 3.06
2811 2895 7.418368 CCGATTCCCTATAGCAGATATGTCATT 60.418 40.741 0.00 0.00 0.00 2.57
2812 2896 8.633561 CGATTCCCTATAGCAGATATGTCATTA 58.366 37.037 0.00 0.00 0.00 1.90
2813 2897 9.757227 GATTCCCTATAGCAGATATGTCATTAC 57.243 37.037 0.00 0.00 0.00 1.89
2814 2898 7.661536 TCCCTATAGCAGATATGTCATTACC 57.338 40.000 0.00 0.00 0.00 2.85
2815 2899 7.189087 TCCCTATAGCAGATATGTCATTACCA 58.811 38.462 0.00 0.00 0.00 3.25
2816 2900 7.124298 TCCCTATAGCAGATATGTCATTACCAC 59.876 40.741 0.00 0.00 0.00 4.16
2817 2901 7.093333 CCCTATAGCAGATATGTCATTACCACA 60.093 40.741 0.00 0.00 0.00 4.17
2818 2902 8.314021 CCTATAGCAGATATGTCATTACCACAA 58.686 37.037 0.00 0.00 0.00 3.33
2819 2903 7.969536 ATAGCAGATATGTCATTACCACAAC 57.030 36.000 0.00 0.00 0.00 3.32
2820 2904 5.126067 AGCAGATATGTCATTACCACAACC 58.874 41.667 0.00 0.00 0.00 3.77
2821 2905 5.104360 AGCAGATATGTCATTACCACAACCT 60.104 40.000 0.00 0.00 0.00 3.50
2822 2906 5.590259 GCAGATATGTCATTACCACAACCTT 59.410 40.000 0.00 0.00 0.00 3.50
2825 2909 9.173021 CAGATATGTCATTACCACAACCTTTTA 57.827 33.333 0.00 0.00 0.00 1.52
2828 2912 9.693739 ATATGTCATTACCACAACCTTTTATGA 57.306 29.630 0.00 0.00 0.00 2.15
2829 2913 7.209471 TGTCATTACCACAACCTTTTATGAC 57.791 36.000 0.00 0.00 40.42 3.06
2831 2915 7.040755 TGTCATTACCACAACCTTTTATGACTG 60.041 37.037 0.00 0.00 40.57 3.51
2832 2916 7.001674 TCATTACCACAACCTTTTATGACTGT 58.998 34.615 0.00 0.00 0.00 3.55
2833 2917 7.504238 TCATTACCACAACCTTTTATGACTGTT 59.496 33.333 0.00 0.00 0.00 3.16
2834 2918 7.648039 TTACCACAACCTTTTATGACTGTTT 57.352 32.000 0.00 0.00 0.00 2.83
2835 2919 6.538945 ACCACAACCTTTTATGACTGTTTT 57.461 33.333 0.00 0.00 0.00 2.43
2836 2920 7.648039 ACCACAACCTTTTATGACTGTTTTA 57.352 32.000 0.00 0.00 0.00 1.52
2838 2922 8.357402 ACCACAACCTTTTATGACTGTTTTATC 58.643 33.333 0.00 0.00 0.00 1.75
2839 2923 8.356657 CCACAACCTTTTATGACTGTTTTATCA 58.643 33.333 0.00 0.00 0.00 2.15
2848 2967 9.513906 TTTATGACTGTTTTATCATCAAGTCCA 57.486 29.630 0.00 0.00 36.87 4.02
2853 2972 9.167311 GACTGTTTTATCATCAAGTCCATTAGT 57.833 33.333 0.00 0.00 0.00 2.24
2855 2974 9.166173 CTGTTTTATCATCAAGTCCATTAGTCA 57.834 33.333 0.00 0.00 0.00 3.41
2864 2983 2.237392 AGTCCATTAGTCACCTGCCTTC 59.763 50.000 0.00 0.00 0.00 3.46
2869 2988 2.009681 TAGTCACCTGCCTTCTGTGA 57.990 50.000 0.00 0.00 36.71 3.58
2872 2991 2.079925 GTCACCTGCCTTCTGTGATTC 58.920 52.381 0.00 0.00 40.75 2.52
2878 2997 4.202461 ACCTGCCTTCTGTGATTCTGTTTA 60.202 41.667 0.00 0.00 0.00 2.01
2879 2998 4.761739 CCTGCCTTCTGTGATTCTGTTTAA 59.238 41.667 0.00 0.00 0.00 1.52
2880 2999 5.241506 CCTGCCTTCTGTGATTCTGTTTAAA 59.758 40.000 0.00 0.00 0.00 1.52
2883 3002 7.725251 TGCCTTCTGTGATTCTGTTTAAATTT 58.275 30.769 0.00 0.00 0.00 1.82
2896 3015 8.835467 TCTGTTTAAATTTTGACTTTCGACTG 57.165 30.769 0.00 0.00 0.00 3.51
2897 3016 7.431084 TCTGTTTAAATTTTGACTTTCGACTGC 59.569 33.333 0.00 0.00 0.00 4.40
2898 3017 6.474102 TGTTTAAATTTTGACTTTCGACTGCC 59.526 34.615 0.00 0.00 0.00 4.85
2899 3018 4.918810 AAATTTTGACTTTCGACTGCCT 57.081 36.364 0.00 0.00 0.00 4.75
2900 3019 3.904136 ATTTTGACTTTCGACTGCCTG 57.096 42.857 0.00 0.00 0.00 4.85
2901 3020 2.325583 TTTGACTTTCGACTGCCTGT 57.674 45.000 0.00 0.00 0.00 4.00
2902 3021 2.325583 TTGACTTTCGACTGCCTGTT 57.674 45.000 0.00 0.00 0.00 3.16
2903 3022 2.325583 TGACTTTCGACTGCCTGTTT 57.674 45.000 0.00 0.00 0.00 2.83
2904 3023 2.210116 TGACTTTCGACTGCCTGTTTC 58.790 47.619 0.00 0.00 0.00 2.78
2905 3024 2.158957 TGACTTTCGACTGCCTGTTTCT 60.159 45.455 0.00 0.00 0.00 2.52
2906 3025 2.872858 GACTTTCGACTGCCTGTTTCTT 59.127 45.455 0.00 0.00 0.00 2.52
2907 3026 4.056050 GACTTTCGACTGCCTGTTTCTTA 58.944 43.478 0.00 0.00 0.00 2.10
2908 3027 4.058817 ACTTTCGACTGCCTGTTTCTTAG 58.941 43.478 0.00 0.00 0.00 2.18
2909 3028 3.746045 TTCGACTGCCTGTTTCTTAGT 57.254 42.857 0.00 0.00 0.00 2.24
2910 3029 3.299340 TCGACTGCCTGTTTCTTAGTC 57.701 47.619 0.00 0.00 35.58 2.59
2911 3030 2.891580 TCGACTGCCTGTTTCTTAGTCT 59.108 45.455 0.00 0.00 36.50 3.24
2912 3031 3.321111 TCGACTGCCTGTTTCTTAGTCTT 59.679 43.478 0.00 0.00 36.50 3.01
2913 3032 4.058817 CGACTGCCTGTTTCTTAGTCTTT 58.941 43.478 0.00 0.00 36.50 2.52
2914 3033 4.511826 CGACTGCCTGTTTCTTAGTCTTTT 59.488 41.667 0.00 0.00 36.50 2.27
2915 3034 5.559035 CGACTGCCTGTTTCTTAGTCTTTTG 60.559 44.000 0.00 0.00 36.50 2.44
2916 3035 4.036852 ACTGCCTGTTTCTTAGTCTTTTGC 59.963 41.667 0.00 0.00 0.00 3.68
2917 3036 3.951037 TGCCTGTTTCTTAGTCTTTTGCA 59.049 39.130 0.00 0.00 0.00 4.08
2918 3037 4.400884 TGCCTGTTTCTTAGTCTTTTGCAA 59.599 37.500 0.00 0.00 0.00 4.08
2919 3038 5.105554 TGCCTGTTTCTTAGTCTTTTGCAAA 60.106 36.000 8.05 8.05 0.00 3.68
2920 3039 5.810074 GCCTGTTTCTTAGTCTTTTGCAAAA 59.190 36.000 22.61 22.61 0.00 2.44
2921 3040 6.312672 GCCTGTTTCTTAGTCTTTTGCAAAAA 59.687 34.615 23.92 13.00 0.00 1.94
2922 3041 7.674008 GCCTGTTTCTTAGTCTTTTGCAAAAAC 60.674 37.037 23.92 21.76 0.00 2.43
2923 3042 7.545615 CCTGTTTCTTAGTCTTTTGCAAAAACT 59.454 33.333 27.29 27.29 0.00 2.66
2924 3043 9.567848 CTGTTTCTTAGTCTTTTGCAAAAACTA 57.432 29.630 25.97 25.97 0.00 2.24
2925 3044 9.349145 TGTTTCTTAGTCTTTTGCAAAAACTAC 57.651 29.630 27.73 23.15 29.66 2.73
2926 3045 8.804743 GTTTCTTAGTCTTTTGCAAAAACTACC 58.195 33.333 27.73 16.06 29.66 3.18
2937 3056 6.072112 TGCAAAAACTACCAGACATCTTTC 57.928 37.500 0.00 0.00 0.00 2.62
2938 3057 5.827797 TGCAAAAACTACCAGACATCTTTCT 59.172 36.000 0.00 0.00 0.00 2.52
2939 3058 6.321181 TGCAAAAACTACCAGACATCTTTCTT 59.679 34.615 0.00 0.00 0.00 2.52
2940 3059 6.638468 GCAAAAACTACCAGACATCTTTCTTG 59.362 38.462 0.00 0.00 0.00 3.02
2941 3060 7.468631 GCAAAAACTACCAGACATCTTTCTTGA 60.469 37.037 0.00 0.00 0.00 3.02
2942 3061 8.405531 CAAAAACTACCAGACATCTTTCTTGAA 58.594 33.333 0.00 0.00 0.00 2.69
2943 3062 7.497925 AAACTACCAGACATCTTTCTTGAAC 57.502 36.000 0.00 0.00 0.00 3.18
2944 3063 6.174720 ACTACCAGACATCTTTCTTGAACA 57.825 37.500 0.00 0.00 0.00 3.18
2947 3066 6.773976 ACCAGACATCTTTCTTGAACAAAA 57.226 33.333 0.00 0.00 0.00 2.44
2948 3067 7.352079 ACCAGACATCTTTCTTGAACAAAAT 57.648 32.000 0.00 0.00 0.00 1.82
2950 3069 8.912988 ACCAGACATCTTTCTTGAACAAAATTA 58.087 29.630 0.00 0.00 0.00 1.40
2951 3070 9.403110 CCAGACATCTTTCTTGAACAAAATTAG 57.597 33.333 0.00 0.00 0.00 1.73
2952 3071 9.403110 CAGACATCTTTCTTGAACAAAATTAGG 57.597 33.333 0.00 0.00 0.00 2.69
2953 3072 9.354673 AGACATCTTTCTTGAACAAAATTAGGA 57.645 29.630 0.00 0.00 0.00 2.94
2957 3076 8.396272 TCTTTCTTGAACAAAATTAGGAGGAG 57.604 34.615 0.00 0.00 0.00 3.69
2958 3077 7.448469 TCTTTCTTGAACAAAATTAGGAGGAGG 59.552 37.037 0.00 0.00 0.00 4.30
2960 3079 6.610830 TCTTGAACAAAATTAGGAGGAGGTT 58.389 36.000 0.00 0.00 0.00 3.50
2961 3080 7.751646 TCTTGAACAAAATTAGGAGGAGGTTA 58.248 34.615 0.00 0.00 0.00 2.85
2962 3081 8.221944 TCTTGAACAAAATTAGGAGGAGGTTAA 58.778 33.333 0.00 0.00 0.00 2.01
2963 3082 8.770010 TTGAACAAAATTAGGAGGAGGTTAAA 57.230 30.769 0.00 0.00 0.00 1.52
2964 3083 8.950007 TGAACAAAATTAGGAGGAGGTTAAAT 57.050 30.769 0.00 0.00 0.00 1.40
2979 3098 9.996554 AGGAGGTTAAATATTTGTTTTCTTTGG 57.003 29.630 11.05 0.00 0.00 3.28
2980 3099 9.990360 GGAGGTTAAATATTTGTTTTCTTTGGA 57.010 29.630 11.05 0.00 0.00 3.53
2982 3101 9.996554 AGGTTAAATATTTGTTTTCTTTGGAGG 57.003 29.630 11.05 0.00 0.00 4.30
2983 3102 9.990360 GGTTAAATATTTGTTTTCTTTGGAGGA 57.010 29.630 11.05 0.00 0.00 3.71
2986 3105 8.491045 AAATATTTGTTTTCTTTGGAGGAGGA 57.509 30.769 0.00 0.00 0.00 3.71
2987 3106 7.709149 ATATTTGTTTTCTTTGGAGGAGGAG 57.291 36.000 0.00 0.00 0.00 3.69
2988 3107 3.508845 TGTTTTCTTTGGAGGAGGAGG 57.491 47.619 0.00 0.00 0.00 4.30
2989 3108 2.783510 TGTTTTCTTTGGAGGAGGAGGT 59.216 45.455 0.00 0.00 0.00 3.85
2992 3111 3.269592 TTCTTTGGAGGAGGAGGTGTA 57.730 47.619 0.00 0.00 0.00 2.90
2993 3112 2.821437 TCTTTGGAGGAGGAGGTGTAG 58.179 52.381 0.00 0.00 0.00 2.74
2994 3113 1.834263 CTTTGGAGGAGGAGGTGTAGG 59.166 57.143 0.00 0.00 0.00 3.18
2995 3114 1.089978 TTGGAGGAGGAGGTGTAGGA 58.910 55.000 0.00 0.00 0.00 2.94
3000 3119 1.044611 GGAGGAGGTGTAGGAGCATC 58.955 60.000 0.00 0.00 0.00 3.91
3002 3121 2.393646 GAGGAGGTGTAGGAGCATCTT 58.606 52.381 0.00 0.00 33.73 2.40
3003 3122 3.567397 GAGGAGGTGTAGGAGCATCTTA 58.433 50.000 0.00 0.00 33.73 2.10
3005 3124 3.964031 AGGAGGTGTAGGAGCATCTTAAG 59.036 47.826 0.00 0.00 33.73 1.85
3008 3127 5.091261 AGGTGTAGGAGCATCTTAAGTTG 57.909 43.478 8.87 8.87 33.73 3.16
3009 3128 3.623510 GGTGTAGGAGCATCTTAAGTTGC 59.376 47.826 24.76 24.76 40.15 4.17
3019 3138 7.130681 AGCATCTTAAGTTGCTATAGGAAGT 57.869 36.000 30.64 7.75 45.97 3.01
3020 3139 6.989169 AGCATCTTAAGTTGCTATAGGAAGTG 59.011 38.462 30.64 3.68 45.97 3.16
3021 3140 6.763610 GCATCTTAAGTTGCTATAGGAAGTGT 59.236 38.462 24.83 7.99 37.66 3.55
3023 3142 8.821894 CATCTTAAGTTGCTATAGGAAGTGTTC 58.178 37.037 14.35 0.00 0.00 3.18
3025 3144 9.251440 TCTTAAGTTGCTATAGGAAGTGTTCTA 57.749 33.333 14.35 1.72 0.00 2.10
3026 3145 9.522804 CTTAAGTTGCTATAGGAAGTGTTCTAG 57.477 37.037 14.35 5.26 0.00 2.43
3027 3146 5.908341 AGTTGCTATAGGAAGTGTTCTAGC 58.092 41.667 13.03 0.00 33.81 3.42
3028 3147 5.422331 AGTTGCTATAGGAAGTGTTCTAGCA 59.578 40.000 13.03 5.46 38.43 3.49
3029 3148 5.521906 TGCTATAGGAAGTGTTCTAGCAG 57.478 43.478 1.04 0.00 36.58 4.24
3030 3149 4.342378 TGCTATAGGAAGTGTTCTAGCAGG 59.658 45.833 1.04 0.00 36.58 4.85
3032 3151 5.508320 GCTATAGGAAGTGTTCTAGCAGGAC 60.508 48.000 1.04 0.00 33.56 3.85
3033 3152 2.609747 AGGAAGTGTTCTAGCAGGACA 58.390 47.619 0.00 0.00 0.00 4.02
3034 3153 2.972713 AGGAAGTGTTCTAGCAGGACAA 59.027 45.455 0.00 0.00 0.00 3.18
3035 3154 3.391296 AGGAAGTGTTCTAGCAGGACAAA 59.609 43.478 0.00 0.00 0.00 2.83
3036 3155 4.134563 GGAAGTGTTCTAGCAGGACAAAA 58.865 43.478 0.00 0.00 0.00 2.44
3037 3156 4.214332 GGAAGTGTTCTAGCAGGACAAAAG 59.786 45.833 0.00 0.00 0.00 2.27
3038 3157 4.423625 AGTGTTCTAGCAGGACAAAAGT 57.576 40.909 0.00 0.00 0.00 2.66
3039 3158 4.781934 AGTGTTCTAGCAGGACAAAAGTT 58.218 39.130 0.00 0.00 0.00 2.66
3040 3159 5.193679 AGTGTTCTAGCAGGACAAAAGTTT 58.806 37.500 0.00 0.00 0.00 2.66
3041 3160 5.652452 AGTGTTCTAGCAGGACAAAAGTTTT 59.348 36.000 0.00 0.00 0.00 2.43
3042 3161 6.152831 AGTGTTCTAGCAGGACAAAAGTTTTT 59.847 34.615 0.00 0.00 0.00 1.94
3043 3162 6.472486 GTGTTCTAGCAGGACAAAAGTTTTTC 59.528 38.462 0.00 0.71 0.00 2.29
3044 3163 6.151985 TGTTCTAGCAGGACAAAAGTTTTTCA 59.848 34.615 0.00 0.00 0.00 2.69
3045 3164 6.767524 TCTAGCAGGACAAAAGTTTTTCAA 57.232 33.333 0.00 0.00 0.00 2.69
3046 3165 7.164230 TCTAGCAGGACAAAAGTTTTTCAAA 57.836 32.000 0.00 0.00 0.00 2.69
3139 3286 8.629158 TGGTGAATGTAGTGATAATTATTTGGC 58.371 33.333 0.00 0.00 0.00 4.52
3140 3287 8.629158 GGTGAATGTAGTGATAATTATTTGGCA 58.371 33.333 0.00 0.00 0.00 4.92
3141 3288 9.450807 GTGAATGTAGTGATAATTATTTGGCAC 57.549 33.333 0.00 3.46 0.00 5.01
3149 3296 6.263168 GTGATAATTATTTGGCACTGTAGGCT 59.737 38.462 0.00 0.00 34.73 4.58
3152 3299 6.358974 AATTATTTGGCACTGTAGGCTTTT 57.641 33.333 0.00 0.00 34.73 2.27
3153 3300 5.799827 TTATTTGGCACTGTAGGCTTTTT 57.200 34.783 0.00 0.00 34.73 1.94
3154 3301 3.451141 TTTGGCACTGTAGGCTTTTTG 57.549 42.857 0.00 0.00 34.73 2.44
3155 3302 2.065899 TGGCACTGTAGGCTTTTTGT 57.934 45.000 0.00 0.00 34.73 2.83
3156 3303 1.953686 TGGCACTGTAGGCTTTTTGTC 59.046 47.619 0.00 0.00 34.73 3.18
3158 3305 3.181449 TGGCACTGTAGGCTTTTTGTCTA 60.181 43.478 0.00 0.00 34.73 2.59
3159 3306 4.010349 GGCACTGTAGGCTTTTTGTCTAT 58.990 43.478 0.00 0.00 35.10 1.98
3160 3307 5.183228 GGCACTGTAGGCTTTTTGTCTATA 58.817 41.667 0.00 0.00 35.10 1.31
3161 3308 5.646360 GGCACTGTAGGCTTTTTGTCTATAA 59.354 40.000 0.00 0.00 35.10 0.98
3162 3309 6.150474 GGCACTGTAGGCTTTTTGTCTATAAA 59.850 38.462 0.00 0.00 35.10 1.40
3197 3344 7.524294 ACATGTCAATGTTTGAAGTTTTGAC 57.476 32.000 8.33 8.33 44.94 3.18
3198 3345 7.322664 ACATGTCAATGTTTGAAGTTTTGACT 58.677 30.769 13.99 1.88 44.94 3.41
3199 3346 7.818930 ACATGTCAATGTTTGAAGTTTTGACTT 59.181 29.630 13.99 7.53 44.94 3.01
3200 3347 8.658609 CATGTCAATGTTTGAAGTTTTGACTTT 58.341 29.630 13.99 3.28 44.00 2.66
3201 3348 8.600449 TGTCAATGTTTGAAGTTTTGACTTTT 57.400 26.923 13.99 0.00 44.00 2.27
3202 3349 9.050601 TGTCAATGTTTGAAGTTTTGACTTTTT 57.949 25.926 13.99 0.00 44.00 1.94
3203 3350 9.316859 GTCAATGTTTGAAGTTTTGACTTTTTG 57.683 29.630 8.09 0.00 42.15 2.44
3204 3351 9.265901 TCAATGTTTGAAGTTTTGACTTTTTGA 57.734 25.926 0.00 0.00 36.59 2.69
3291 3438 2.100584 AGAAATTGTTCTTTGTGCCGCA 59.899 40.909 0.00 0.00 41.55 5.69
3293 3440 2.068837 ATTGTTCTTTGTGCCGCATG 57.931 45.000 0.00 0.00 0.00 4.06
3303 3450 4.575076 GCCGCATGCAACAAATCA 57.425 50.000 19.57 0.00 40.77 2.57
3304 3451 2.072490 GCCGCATGCAACAAATCAC 58.928 52.632 19.57 0.00 40.77 3.06
3306 3453 0.038435 CCGCATGCAACAAATCACCA 60.038 50.000 19.57 0.00 0.00 4.17
3307 3454 1.604947 CCGCATGCAACAAATCACCAA 60.605 47.619 19.57 0.00 0.00 3.67
3308 3455 1.456544 CGCATGCAACAAATCACCAAC 59.543 47.619 19.57 0.00 0.00 3.77
3309 3456 1.456544 GCATGCAACAAATCACCAACG 59.543 47.619 14.21 0.00 0.00 4.10
3310 3457 2.060284 CATGCAACAAATCACCAACGG 58.940 47.619 0.00 0.00 0.00 4.44
3315 3462 4.113354 GCAACAAATCACCAACGGTTTTA 58.887 39.130 0.00 0.00 31.02 1.52
3324 3471 8.725405 AATCACCAACGGTTTTAAAGAAAATT 57.275 26.923 0.00 0.00 36.92 1.82
3325 3472 8.725405 ATCACCAACGGTTTTAAAGAAAATTT 57.275 26.923 0.00 0.00 36.92 1.82
3335 3482 9.811995 GGTTTTAAAGAAAATTTACTGACCTGT 57.188 29.630 0.00 0.00 36.92 4.00
3354 3501 5.886960 CTGTTCAAGGAGGGAAATAACAG 57.113 43.478 0.00 0.00 37.20 3.16
3356 3503 5.947663 TGTTCAAGGAGGGAAATAACAGAA 58.052 37.500 0.00 0.00 0.00 3.02
3357 3504 6.552008 TGTTCAAGGAGGGAAATAACAGAAT 58.448 36.000 0.00 0.00 0.00 2.40
3358 3505 7.010160 TGTTCAAGGAGGGAAATAACAGAATT 58.990 34.615 0.00 0.00 0.00 2.17
3359 3506 7.176690 TGTTCAAGGAGGGAAATAACAGAATTC 59.823 37.037 0.00 0.00 0.00 2.17
3360 3507 5.880332 TCAAGGAGGGAAATAACAGAATTCG 59.120 40.000 0.00 0.00 0.00 3.34
3377 3524 7.610305 ACAGAATTCGAGTATAATTGGGTTTGT 59.390 33.333 0.00 0.00 0.00 2.83
3378 3525 8.122952 CAGAATTCGAGTATAATTGGGTTTGTC 58.877 37.037 0.00 0.00 0.00 3.18
3380 3527 7.787725 ATTCGAGTATAATTGGGTTTGTCTC 57.212 36.000 0.00 0.00 0.00 3.36
3381 3528 6.540438 TCGAGTATAATTGGGTTTGTCTCT 57.460 37.500 0.00 0.00 0.00 3.10
3383 3530 6.816640 TCGAGTATAATTGGGTTTGTCTCTTG 59.183 38.462 0.00 0.00 0.00 3.02
3384 3531 6.594159 CGAGTATAATTGGGTTTGTCTCTTGT 59.406 38.462 0.00 0.00 0.00 3.16
3387 3534 9.449719 AGTATAATTGGGTTTGTCTCTTGTAAG 57.550 33.333 0.00 0.00 0.00 2.34
3388 3535 9.444600 GTATAATTGGGTTTGTCTCTTGTAAGA 57.555 33.333 0.00 0.00 0.00 2.10
3390 3537 6.824305 ATTGGGTTTGTCTCTTGTAAGATG 57.176 37.500 0.00 0.00 33.93 2.90
3391 3538 5.304686 TGGGTTTGTCTCTTGTAAGATGT 57.695 39.130 0.00 0.00 33.93 3.06
3392 3539 6.428083 TGGGTTTGTCTCTTGTAAGATGTA 57.572 37.500 0.00 0.00 33.93 2.29
3393 3540 6.833041 TGGGTTTGTCTCTTGTAAGATGTAA 58.167 36.000 0.00 0.00 33.93 2.41
3394 3541 7.284074 TGGGTTTGTCTCTTGTAAGATGTAAA 58.716 34.615 0.00 0.00 33.93 2.01
3441 3600 1.131883 CTAGCATGCTCTGTGGCAAAC 59.868 52.381 26.57 0.00 45.68 2.93
3445 3604 1.237285 ATGCTCTGTGGCAAACCGTC 61.237 55.000 0.00 0.00 45.68 4.79
3452 3611 1.525077 TGGCAAACCGTCACTCACC 60.525 57.895 0.00 0.00 39.70 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 7.440198 TGATCATATGTCTGAGATTGAAGTCC 58.560 38.462 1.90 0.00 0.00 3.85
67 68 6.889177 TGGGATAACTTCTATGCAATCAAACA 59.111 34.615 0.00 0.00 0.00 2.83
70 71 7.395772 TGTTTGGGATAACTTCTATGCAATCAA 59.604 33.333 0.00 0.00 0.00 2.57
90 91 0.318120 GCACCCCTGTTGATGTTTGG 59.682 55.000 0.00 0.00 0.00 3.28
113 114 7.886338 AGTTCAAAACCAAATCATAGGAAGTC 58.114 34.615 0.00 0.00 0.00 3.01
234 236 0.249489 CTAGCCACATGTAGCGACCC 60.249 60.000 10.66 0.00 0.00 4.46
288 290 4.155280 AGGGGTTTTATTCAACGTTCGATG 59.845 41.667 0.00 0.00 0.00 3.84
291 293 4.692155 ACTAGGGGTTTTATTCAACGTTCG 59.308 41.667 0.00 0.00 0.00 3.95
307 309 9.184523 TGATATTTGTTTTATGTGAACTAGGGG 57.815 33.333 0.00 0.00 0.00 4.79
475 479 7.951530 AAAGAATGACACCAAAATTCACATC 57.048 32.000 0.00 0.00 33.61 3.06
504 508 5.069648 TGAGAATGGCACCAAAATTGTGTAA 59.930 36.000 0.00 0.00 0.00 2.41
505 509 4.586421 TGAGAATGGCACCAAAATTGTGTA 59.414 37.500 0.00 0.00 0.00 2.90
507 511 3.742369 GTGAGAATGGCACCAAAATTGTG 59.258 43.478 0.00 0.00 0.00 3.33
520 524 9.716531 ATGTATGTACATGATTAGTGAGAATGG 57.283 33.333 18.81 0.00 44.66 3.16
545 549 6.180472 CAAAACCACCCTAATCTCACACTAT 58.820 40.000 0.00 0.00 0.00 2.12
554 558 5.801531 AGGAAAACAAAACCACCCTAATC 57.198 39.130 0.00 0.00 0.00 1.75
559 563 7.633193 AAAATAAAGGAAAACAAAACCACCC 57.367 32.000 0.00 0.00 0.00 4.61
583 587 7.107639 ACAAAGGAAAGGAAATTCTCGAAAA 57.892 32.000 0.00 0.00 0.00 2.29
587 591 5.689383 TGACAAAGGAAAGGAAATTCTCG 57.311 39.130 0.00 0.00 0.00 4.04
588 592 5.010012 TGCTGACAAAGGAAAGGAAATTCTC 59.990 40.000 0.00 0.00 0.00 2.87
589 593 4.895297 TGCTGACAAAGGAAAGGAAATTCT 59.105 37.500 0.00 0.00 0.00 2.40
590 594 5.010012 TCTGCTGACAAAGGAAAGGAAATTC 59.990 40.000 0.00 0.00 0.00 2.17
591 595 4.895297 TCTGCTGACAAAGGAAAGGAAATT 59.105 37.500 0.00 0.00 0.00 1.82
592 596 4.473444 TCTGCTGACAAAGGAAAGGAAAT 58.527 39.130 0.00 0.00 0.00 2.17
597 612 6.865205 CCTAATTTTCTGCTGACAAAGGAAAG 59.135 38.462 4.89 0.00 0.00 2.62
607 622 3.439857 AGCACCCTAATTTTCTGCTGA 57.560 42.857 0.00 0.00 36.83 4.26
608 623 3.498927 CAGCACCCTAATTTTCTGCTG 57.501 47.619 10.75 10.75 46.41 4.41
611 626 1.478105 GCCCAGCACCCTAATTTTCTG 59.522 52.381 0.00 0.00 0.00 3.02
612 627 1.359130 AGCCCAGCACCCTAATTTTCT 59.641 47.619 0.00 0.00 0.00 2.52
614 629 1.901833 CAAGCCCAGCACCCTAATTTT 59.098 47.619 0.00 0.00 0.00 1.82
615 630 1.560505 CAAGCCCAGCACCCTAATTT 58.439 50.000 0.00 0.00 0.00 1.82
616 631 0.324645 CCAAGCCCAGCACCCTAATT 60.325 55.000 0.00 0.00 0.00 1.40
622 637 1.076485 ATCATCCAAGCCCAGCACC 60.076 57.895 0.00 0.00 0.00 5.01
631 646 4.520111 TCCACAACAGAAACATCATCCAAG 59.480 41.667 0.00 0.00 0.00 3.61
672 687 9.981114 CCCTAATTTTCTGTGTATGTTTTTCTT 57.019 29.630 0.00 0.00 0.00 2.52
679 694 8.472007 TTCAAACCCTAATTTTCTGTGTATGT 57.528 30.769 0.00 0.00 0.00 2.29
684 699 7.063780 GCATCATTCAAACCCTAATTTTCTGTG 59.936 37.037 0.00 0.00 0.00 3.66
685 700 7.038799 AGCATCATTCAAACCCTAATTTTCTGT 60.039 33.333 0.00 0.00 0.00 3.41
688 703 8.552083 AAAGCATCATTCAAACCCTAATTTTC 57.448 30.769 0.00 0.00 0.00 2.29
720 742 7.941431 TTCTTTTCGGCCCAAATAATAAGTA 57.059 32.000 0.00 0.00 0.00 2.24
723 745 7.931948 TGTTTTTCTTTTCGGCCCAAATAATAA 59.068 29.630 0.00 0.00 0.00 1.40
727 749 5.277857 TGTTTTTCTTTTCGGCCCAAATA 57.722 34.783 0.00 0.00 0.00 1.40
759 781 1.376037 GGGACTTCGCTGAACCCAG 60.376 63.158 0.00 0.00 43.22 4.45
798 820 1.688735 TGAGGATCCGATTCGCTGAAT 59.311 47.619 5.98 3.90 34.71 2.57
815 837 4.436998 GGCCAGACGGACGGTGAG 62.437 72.222 0.00 0.00 0.00 3.51
984 1007 1.676635 CATGGCTGAGGGTGTGGTG 60.677 63.158 0.00 0.00 0.00 4.17
1133 1157 4.479993 ATCTGCGCCTCCCACTGC 62.480 66.667 4.18 0.00 0.00 4.40
1134 1158 2.202987 GATCTGCGCCTCCCACTG 60.203 66.667 4.18 0.00 0.00 3.66
1135 1159 2.364842 AGATCTGCGCCTCCCACT 60.365 61.111 4.18 0.00 0.00 4.00
1136 1160 2.202987 CAGATCTGCGCCTCCCAC 60.203 66.667 10.38 0.00 0.00 4.61
1137 1161 3.473647 CCAGATCTGCGCCTCCCA 61.474 66.667 17.76 0.00 0.00 4.37
1183 1208 1.591703 GAGATGTCGGTCACCTGCA 59.408 57.895 0.00 0.00 0.00 4.41
1355 1380 1.743772 CGGACGGCCATGATCTTCTTT 60.744 52.381 8.76 0.00 0.00 2.52
1477 1502 9.853555 CCTAGACAATACTGCATAGAAGATAAG 57.146 37.037 0.00 0.00 0.00 1.73
1480 1505 7.507277 TCACCTAGACAATACTGCATAGAAGAT 59.493 37.037 0.00 0.00 0.00 2.40
1483 1508 7.436933 CATCACCTAGACAATACTGCATAGAA 58.563 38.462 0.00 0.00 0.00 2.10
1487 1512 4.410228 ACCATCACCTAGACAATACTGCAT 59.590 41.667 0.00 0.00 0.00 3.96
1494 1519 5.186198 GCAAACTACCATCACCTAGACAAT 58.814 41.667 0.00 0.00 0.00 2.71
1519 1546 8.841300 CAACTAGATCTAATACTAGTCACTGCA 58.159 37.037 0.00 0.00 45.40 4.41
1540 1567 2.769663 ACCAACACCACTCACTCAACTA 59.230 45.455 0.00 0.00 0.00 2.24
1606 1633 9.847224 AGACAATATAATTAAACTGGGTACTGG 57.153 33.333 0.00 0.00 0.00 4.00
1646 1675 6.698380 TCAACTAAGAGATGAACCTGGTAAC 58.302 40.000 0.00 0.00 0.00 2.50
1650 1679 7.108847 AGATTTCAACTAAGAGATGAACCTGG 58.891 38.462 0.00 0.00 36.85 4.45
1682 1711 4.770531 CCACATGGCTATCATCCAAATCAT 59.229 41.667 0.00 0.00 37.13 2.45
1688 1717 4.598807 AGATTACCACATGGCTATCATCCA 59.401 41.667 12.74 0.00 39.32 3.41
1711 1740 2.961526 TTTGCCAAAACCGTTTAGCA 57.038 40.000 14.52 14.52 39.21 3.49
1722 1751 5.680594 ATATGAAGCAGGAATTTGCCAAA 57.319 34.783 0.00 0.00 45.18 3.28
1757 1786 8.379902 CAAACACCTAAAGCAAAACAGTAAAAG 58.620 33.333 0.00 0.00 0.00 2.27
1771 1800 6.850752 AATCCATTACCCAAACACCTAAAG 57.149 37.500 0.00 0.00 0.00 1.85
1773 1802 7.064229 GGATAATCCATTACCCAAACACCTAA 58.936 38.462 0.00 0.00 36.28 2.69
1777 1806 8.706322 ATAAGGATAATCCATTACCCAAACAC 57.294 34.615 0.00 0.00 39.61 3.32
1827 1857 7.174107 AGCAAACTAGCATCCAACATTTATT 57.826 32.000 0.00 0.00 36.85 1.40
1876 1906 4.314961 TGCTAACAGAATCGAGCTTTTCA 58.685 39.130 0.00 0.00 35.89 2.69
1877 1907 4.928661 TGCTAACAGAATCGAGCTTTTC 57.071 40.909 0.00 0.00 35.89 2.29
1893 1923 2.009774 GAATTTCCTCAGCGCTGCTAA 58.990 47.619 32.44 21.32 36.40 3.09
1900 1930 3.862267 CACTCACTAGAATTTCCTCAGCG 59.138 47.826 0.00 0.00 0.00 5.18
1924 1954 4.394729 GAAAACACTGGGAATGGACACTA 58.605 43.478 0.00 0.00 0.00 2.74
1993 2023 9.388506 CTCAGTGAGAAACTACATTATCCAAAT 57.611 33.333 15.46 0.00 36.83 2.32
2002 2032 3.580458 AGGCACTCAGTGAGAAACTACAT 59.420 43.478 26.86 0.00 36.83 2.29
2013 2043 2.736144 TACCGTTAAGGCACTCAGTG 57.264 50.000 0.00 0.00 46.52 3.66
2029 2059 9.128107 CAGATACAACACAAATTCACAATTACC 57.872 33.333 0.00 0.00 0.00 2.85
2085 2115 3.016031 TGCAACAGGGTAATAGCACATG 58.984 45.455 0.00 0.00 0.00 3.21
2201 2231 4.023980 CACCAGTGGTCAGAAGGTAGATA 58.976 47.826 13.31 0.00 31.02 1.98
2327 2358 4.202040 TGACAGACAAGGCAAACAGAAATG 60.202 41.667 0.00 0.00 0.00 2.32
2329 2360 3.351740 TGACAGACAAGGCAAACAGAAA 58.648 40.909 0.00 0.00 0.00 2.52
2334 2365 4.681744 TCAAATTGACAGACAAGGCAAAC 58.318 39.130 0.00 0.00 42.02 2.93
2386 2417 2.656947 AGCTGCAACCAAGTTAAGGA 57.343 45.000 1.02 0.00 0.00 3.36
2557 2591 7.226523 CCACTACATCGAAATGTTCATTCCATA 59.773 37.037 0.00 0.00 43.74 2.74
2558 2592 6.038603 CCACTACATCGAAATGTTCATTCCAT 59.961 38.462 0.00 0.00 43.74 3.41
2559 2593 5.353956 CCACTACATCGAAATGTTCATTCCA 59.646 40.000 0.00 0.00 43.74 3.53
2560 2594 5.730568 GCCACTACATCGAAATGTTCATTCC 60.731 44.000 0.00 0.00 43.74 3.01
2564 2599 3.669536 TGCCACTACATCGAAATGTTCA 58.330 40.909 0.00 0.00 43.74 3.18
2609 2644 5.163248 TGTCTGAACAGGAATAGGTTTCACA 60.163 40.000 1.93 0.00 0.00 3.58
2610 2645 5.305585 TGTCTGAACAGGAATAGGTTTCAC 58.694 41.667 1.93 0.00 0.00 3.18
2634 2670 8.558700 CACATCGACATTCAACATATCCAAATA 58.441 33.333 0.00 0.00 0.00 1.40
2642 2678 5.931724 ACAGAACACATCGACATTCAACATA 59.068 36.000 0.00 0.00 0.00 2.29
2656 2740 8.049117 ACCAAGACATATTATGACAGAACACAT 58.951 33.333 10.62 0.00 0.00 3.21
2693 2777 4.361451 AAGTGGAATAAGCATTCGCAAG 57.639 40.909 0.00 0.00 41.37 4.01
2694 2778 4.484236 CAAAGTGGAATAAGCATTCGCAA 58.516 39.130 0.00 0.00 41.37 4.85
2695 2779 3.673052 GCAAAGTGGAATAAGCATTCGCA 60.673 43.478 0.00 0.00 41.37 5.10
2697 2781 4.095410 TGCAAAGTGGAATAAGCATTCG 57.905 40.909 0.00 0.00 41.37 3.34
2709 2793 4.700268 TGCATACACTATTGCAAAGTGG 57.300 40.909 28.95 19.43 46.97 4.00
2730 2814 8.153550 AGAGCTTAAGTATGCAATAGTAAGCAT 58.846 33.333 25.04 15.20 46.27 3.79
2731 2815 7.439356 CAGAGCTTAAGTATGCAATAGTAAGCA 59.561 37.037 25.04 3.49 46.27 3.91
2732 2816 7.439655 ACAGAGCTTAAGTATGCAATAGTAAGC 59.560 37.037 19.79 19.79 45.29 3.09
2733 2817 8.879342 ACAGAGCTTAAGTATGCAATAGTAAG 57.121 34.615 4.02 0.00 33.68 2.34
2746 2830 4.277672 TGACAAGTACGACAGAGCTTAAGT 59.722 41.667 4.02 0.00 0.00 2.24
2750 2834 3.944055 ATGACAAGTACGACAGAGCTT 57.056 42.857 0.00 0.00 0.00 3.74
2751 2835 3.944055 AATGACAAGTACGACAGAGCT 57.056 42.857 0.00 0.00 0.00 4.09
2763 2847 4.744631 GGCCAAAGTTGTTGTAATGACAAG 59.255 41.667 0.00 0.00 46.20 3.16
2774 2858 0.966179 GGGAATCGGCCAAAGTTGTT 59.034 50.000 2.24 0.00 0.00 2.83
2789 2873 7.678171 TGGTAATGACATATCTGCTATAGGGAA 59.322 37.037 1.04 0.00 0.00 3.97
2799 2883 7.630242 AAAGGTTGTGGTAATGACATATCTG 57.370 36.000 0.00 0.00 0.00 2.90
2800 2884 9.920946 ATAAAAGGTTGTGGTAATGACATATCT 57.079 29.630 0.00 0.00 0.00 1.98
2801 2885 9.950680 CATAAAAGGTTGTGGTAATGACATATC 57.049 33.333 0.00 0.00 0.00 1.63
2802 2886 9.693739 TCATAAAAGGTTGTGGTAATGACATAT 57.306 29.630 0.00 0.00 0.00 1.78
2804 2888 7.669722 AGTCATAAAAGGTTGTGGTAATGACAT 59.330 33.333 12.92 0.00 42.68 3.06
2806 2890 7.040686 ACAGTCATAAAAGGTTGTGGTAATGAC 60.041 37.037 0.00 0.00 41.30 3.06
2809 2893 7.833285 AACAGTCATAAAAGGTTGTGGTAAT 57.167 32.000 0.00 0.00 0.00 1.89
2810 2894 7.648039 AAACAGTCATAAAAGGTTGTGGTAA 57.352 32.000 0.00 0.00 0.00 2.85
2811 2895 7.648039 AAAACAGTCATAAAAGGTTGTGGTA 57.352 32.000 0.00 0.00 0.00 3.25
2812 2896 6.538945 AAAACAGTCATAAAAGGTTGTGGT 57.461 33.333 0.00 0.00 0.00 4.16
2813 2897 8.356657 TGATAAAACAGTCATAAAAGGTTGTGG 58.643 33.333 0.00 0.00 0.00 4.17
2814 2898 9.912634 ATGATAAAACAGTCATAAAAGGTTGTG 57.087 29.630 0.00 0.00 33.52 3.33
2822 2906 9.513906 TGGACTTGATGATAAAACAGTCATAAA 57.486 29.630 0.00 0.00 35.33 1.40
2825 2909 8.585471 AATGGACTTGATGATAAAACAGTCAT 57.415 30.769 0.00 0.00 37.76 3.06
2828 2912 9.167311 GACTAATGGACTTGATGATAAAACAGT 57.833 33.333 0.00 0.00 0.00 3.55
2829 2913 9.166173 TGACTAATGGACTTGATGATAAAACAG 57.834 33.333 0.00 0.00 0.00 3.16
2831 2915 8.398665 GGTGACTAATGGACTTGATGATAAAAC 58.601 37.037 0.00 0.00 0.00 2.43
2832 2916 8.328758 AGGTGACTAATGGACTTGATGATAAAA 58.671 33.333 0.00 0.00 40.61 1.52
2833 2917 7.770433 CAGGTGACTAATGGACTTGATGATAAA 59.230 37.037 0.00 0.00 40.21 1.40
2834 2918 7.275183 CAGGTGACTAATGGACTTGATGATAA 58.725 38.462 0.00 0.00 40.21 1.75
2835 2919 6.686378 GCAGGTGACTAATGGACTTGATGATA 60.686 42.308 0.00 0.00 40.21 2.15
2836 2920 5.678583 CAGGTGACTAATGGACTTGATGAT 58.321 41.667 0.00 0.00 40.21 2.45
2838 2922 3.624861 GCAGGTGACTAATGGACTTGATG 59.375 47.826 0.00 0.00 40.21 3.07
2839 2923 3.370953 GGCAGGTGACTAATGGACTTGAT 60.371 47.826 0.00 0.00 40.21 2.57
2841 2925 2.026822 AGGCAGGTGACTAATGGACTTG 60.027 50.000 0.00 0.00 40.21 3.16
2846 2965 2.026822 ACAGAAGGCAGGTGACTAATGG 60.027 50.000 3.07 0.00 40.21 3.16
2848 2967 2.906389 TCACAGAAGGCAGGTGACTAAT 59.094 45.455 0.00 0.00 40.21 1.73
2853 2972 1.980765 AGAATCACAGAAGGCAGGTGA 59.019 47.619 0.00 0.00 44.73 4.02
2855 2974 1.701847 ACAGAATCACAGAAGGCAGGT 59.298 47.619 0.00 0.00 0.00 4.00
2872 2991 7.305993 GGCAGTCGAAAGTCAAAATTTAAACAG 60.306 37.037 0.00 0.00 0.00 3.16
2878 2997 4.097892 ACAGGCAGTCGAAAGTCAAAATTT 59.902 37.500 0.00 0.00 0.00 1.82
2879 2998 3.632145 ACAGGCAGTCGAAAGTCAAAATT 59.368 39.130 0.00 0.00 0.00 1.82
2880 2999 3.214328 ACAGGCAGTCGAAAGTCAAAAT 58.786 40.909 0.00 0.00 0.00 1.82
2883 3002 2.325583 AACAGGCAGTCGAAAGTCAA 57.674 45.000 0.00 0.00 0.00 3.18
2887 3006 4.058817 ACTAAGAAACAGGCAGTCGAAAG 58.941 43.478 0.00 0.00 0.00 2.62
2888 3007 4.056050 GACTAAGAAACAGGCAGTCGAAA 58.944 43.478 0.00 0.00 0.00 3.46
2889 3008 3.321111 AGACTAAGAAACAGGCAGTCGAA 59.679 43.478 0.00 0.00 40.41 3.71
2890 3009 2.891580 AGACTAAGAAACAGGCAGTCGA 59.108 45.455 0.00 0.00 40.41 4.20
2891 3010 3.305398 AGACTAAGAAACAGGCAGTCG 57.695 47.619 0.00 0.00 40.41 4.18
2892 3011 5.752712 CAAAAGACTAAGAAACAGGCAGTC 58.247 41.667 0.00 0.00 36.67 3.51
2893 3012 4.036852 GCAAAAGACTAAGAAACAGGCAGT 59.963 41.667 0.00 0.00 0.00 4.40
2894 3013 4.036734 TGCAAAAGACTAAGAAACAGGCAG 59.963 41.667 0.00 0.00 0.00 4.85
2895 3014 3.951037 TGCAAAAGACTAAGAAACAGGCA 59.049 39.130 0.00 0.00 0.00 4.75
2896 3015 4.568152 TGCAAAAGACTAAGAAACAGGC 57.432 40.909 0.00 0.00 0.00 4.85
2897 3016 7.545615 AGTTTTTGCAAAAGACTAAGAAACAGG 59.454 33.333 25.13 0.00 0.00 4.00
2898 3017 8.466086 AGTTTTTGCAAAAGACTAAGAAACAG 57.534 30.769 25.13 0.00 0.00 3.16
2899 3018 9.349145 GTAGTTTTTGCAAAAGACTAAGAAACA 57.651 29.630 28.56 16.33 30.73 2.83
2900 3019 8.804743 GGTAGTTTTTGCAAAAGACTAAGAAAC 58.195 33.333 28.56 22.90 30.73 2.78
2901 3020 8.524487 TGGTAGTTTTTGCAAAAGACTAAGAAA 58.476 29.630 28.56 19.24 30.73 2.52
2902 3021 8.057536 TGGTAGTTTTTGCAAAAGACTAAGAA 57.942 30.769 28.56 20.64 30.73 2.52
2903 3022 7.554835 TCTGGTAGTTTTTGCAAAAGACTAAGA 59.445 33.333 28.56 25.96 30.73 2.10
2904 3023 7.644157 GTCTGGTAGTTTTTGCAAAAGACTAAG 59.356 37.037 28.56 24.96 30.73 2.18
2905 3024 7.121463 TGTCTGGTAGTTTTTGCAAAAGACTAA 59.879 33.333 28.56 20.55 30.67 2.24
2906 3025 6.600032 TGTCTGGTAGTTTTTGCAAAAGACTA 59.400 34.615 26.23 26.09 30.67 2.59
2907 3026 5.417580 TGTCTGGTAGTTTTTGCAAAAGACT 59.582 36.000 27.29 27.29 30.67 3.24
2908 3027 5.646606 TGTCTGGTAGTTTTTGCAAAAGAC 58.353 37.500 22.78 22.53 30.26 3.01
2909 3028 5.906113 TGTCTGGTAGTTTTTGCAAAAGA 57.094 34.783 22.78 13.09 0.00 2.52
2910 3029 6.507023 AGATGTCTGGTAGTTTTTGCAAAAG 58.493 36.000 22.78 11.02 0.00 2.27
2911 3030 6.463995 AGATGTCTGGTAGTTTTTGCAAAA 57.536 33.333 20.46 20.46 0.00 2.44
2912 3031 6.463995 AAGATGTCTGGTAGTTTTTGCAAA 57.536 33.333 8.05 8.05 0.00 3.68
2913 3032 6.321181 AGAAAGATGTCTGGTAGTTTTTGCAA 59.679 34.615 0.00 0.00 0.00 4.08
2914 3033 5.827797 AGAAAGATGTCTGGTAGTTTTTGCA 59.172 36.000 0.00 0.00 0.00 4.08
2915 3034 6.319141 AGAAAGATGTCTGGTAGTTTTTGC 57.681 37.500 0.00 0.00 0.00 3.68
2916 3035 7.930217 TCAAGAAAGATGTCTGGTAGTTTTTG 58.070 34.615 0.00 0.00 0.00 2.44
2917 3036 8.406297 GTTCAAGAAAGATGTCTGGTAGTTTTT 58.594 33.333 0.00 0.00 0.00 1.94
2918 3037 7.556275 TGTTCAAGAAAGATGTCTGGTAGTTTT 59.444 33.333 0.00 0.00 0.00 2.43
2919 3038 7.054124 TGTTCAAGAAAGATGTCTGGTAGTTT 58.946 34.615 0.00 0.00 0.00 2.66
2920 3039 6.591935 TGTTCAAGAAAGATGTCTGGTAGTT 58.408 36.000 0.00 0.00 0.00 2.24
2921 3040 6.174720 TGTTCAAGAAAGATGTCTGGTAGT 57.825 37.500 0.00 0.00 0.00 2.73
2922 3041 7.496529 TTTGTTCAAGAAAGATGTCTGGTAG 57.503 36.000 0.00 0.00 0.00 3.18
2923 3042 7.873719 TTTTGTTCAAGAAAGATGTCTGGTA 57.126 32.000 0.00 0.00 0.00 3.25
2924 3043 6.773976 TTTTGTTCAAGAAAGATGTCTGGT 57.226 33.333 0.00 0.00 0.00 4.00
2925 3044 9.403110 CTAATTTTGTTCAAGAAAGATGTCTGG 57.597 33.333 0.00 0.00 0.00 3.86
2926 3045 9.403110 CCTAATTTTGTTCAAGAAAGATGTCTG 57.597 33.333 0.00 0.00 0.00 3.51
2937 3056 6.901081 AACCTCCTCCTAATTTTGTTCAAG 57.099 37.500 0.00 0.00 0.00 3.02
2938 3057 8.770010 TTTAACCTCCTCCTAATTTTGTTCAA 57.230 30.769 0.00 0.00 0.00 2.69
2939 3058 8.950007 ATTTAACCTCCTCCTAATTTTGTTCA 57.050 30.769 0.00 0.00 0.00 3.18
2950 3069 9.601810 AAGAAAACAAATATTTAACCTCCTCCT 57.398 29.630 0.00 0.00 0.00 3.69
2953 3072 9.996554 CCAAAGAAAACAAATATTTAACCTCCT 57.003 29.630 0.00 0.00 0.00 3.69
2957 3076 9.990360 TCCTCCAAAGAAAACAAATATTTAACC 57.010 29.630 0.00 0.00 0.00 2.85
2960 3079 9.594936 TCCTCCTCCAAAGAAAACAAATATTTA 57.405 29.630 0.00 0.00 0.00 1.40
2961 3080 8.491045 TCCTCCTCCAAAGAAAACAAATATTT 57.509 30.769 0.00 0.00 0.00 1.40
2962 3081 7.179160 CCTCCTCCTCCAAAGAAAACAAATATT 59.821 37.037 0.00 0.00 0.00 1.28
2963 3082 6.665248 CCTCCTCCTCCAAAGAAAACAAATAT 59.335 38.462 0.00 0.00 0.00 1.28
2964 3083 6.010219 CCTCCTCCTCCAAAGAAAACAAATA 58.990 40.000 0.00 0.00 0.00 1.40
2965 3084 4.835056 CCTCCTCCTCCAAAGAAAACAAAT 59.165 41.667 0.00 0.00 0.00 2.32
2966 3085 4.215109 CCTCCTCCTCCAAAGAAAACAAA 58.785 43.478 0.00 0.00 0.00 2.83
2967 3086 3.204382 ACCTCCTCCTCCAAAGAAAACAA 59.796 43.478 0.00 0.00 0.00 2.83
2968 3087 2.783510 ACCTCCTCCTCCAAAGAAAACA 59.216 45.455 0.00 0.00 0.00 2.83
2969 3088 3.149981 CACCTCCTCCTCCAAAGAAAAC 58.850 50.000 0.00 0.00 0.00 2.43
2970 3089 2.783510 ACACCTCCTCCTCCAAAGAAAA 59.216 45.455 0.00 0.00 0.00 2.29
2971 3090 2.418669 ACACCTCCTCCTCCAAAGAAA 58.581 47.619 0.00 0.00 0.00 2.52
2972 3091 2.118403 ACACCTCCTCCTCCAAAGAA 57.882 50.000 0.00 0.00 0.00 2.52
2973 3092 2.559931 CCTACACCTCCTCCTCCAAAGA 60.560 54.545 0.00 0.00 0.00 2.52
2975 3094 1.435563 TCCTACACCTCCTCCTCCAAA 59.564 52.381 0.00 0.00 0.00 3.28
2977 3096 0.631753 CTCCTACACCTCCTCCTCCA 59.368 60.000 0.00 0.00 0.00 3.86
2978 3097 0.757561 GCTCCTACACCTCCTCCTCC 60.758 65.000 0.00 0.00 0.00 4.30
2979 3098 0.033011 TGCTCCTACACCTCCTCCTC 60.033 60.000 0.00 0.00 0.00 3.71
2980 3099 0.639392 ATGCTCCTACACCTCCTCCT 59.361 55.000 0.00 0.00 0.00 3.69
2982 3101 2.080654 AGATGCTCCTACACCTCCTC 57.919 55.000 0.00 0.00 0.00 3.71
2983 3102 2.559381 AAGATGCTCCTACACCTCCT 57.441 50.000 0.00 0.00 0.00 3.69
2984 3103 3.707102 ACTTAAGATGCTCCTACACCTCC 59.293 47.826 10.09 0.00 0.00 4.30
2985 3104 5.112686 CAACTTAAGATGCTCCTACACCTC 58.887 45.833 10.09 0.00 0.00 3.85
2986 3105 4.624125 GCAACTTAAGATGCTCCTACACCT 60.624 45.833 25.55 0.00 40.18 4.00
2987 3106 3.623510 GCAACTTAAGATGCTCCTACACC 59.376 47.826 25.55 0.00 40.18 4.16
2988 3107 4.866682 GCAACTTAAGATGCTCCTACAC 57.133 45.455 25.55 0.00 40.18 2.90
3000 3119 9.522804 CTAGAACACTTCCTATAGCAACTTAAG 57.477 37.037 0.00 0.00 0.00 1.85
3002 3121 7.123697 TGCTAGAACACTTCCTATAGCAACTTA 59.876 37.037 2.43 0.00 41.77 2.24
3003 3122 6.070767 TGCTAGAACACTTCCTATAGCAACTT 60.071 38.462 2.43 0.00 41.77 2.66
3005 3124 5.661458 TGCTAGAACACTTCCTATAGCAAC 58.339 41.667 2.43 0.00 41.77 4.17
3008 3127 4.585162 TCCTGCTAGAACACTTCCTATAGC 59.415 45.833 0.00 0.00 36.91 2.97
3009 3128 5.594725 TGTCCTGCTAGAACACTTCCTATAG 59.405 44.000 0.00 0.00 0.00 1.31
3010 3129 5.516044 TGTCCTGCTAGAACACTTCCTATA 58.484 41.667 0.00 0.00 0.00 1.31
3011 3130 4.353777 TGTCCTGCTAGAACACTTCCTAT 58.646 43.478 0.00 0.00 0.00 2.57
3013 3132 2.609747 TGTCCTGCTAGAACACTTCCT 58.390 47.619 0.00 0.00 0.00 3.36
3014 3133 3.402628 TTGTCCTGCTAGAACACTTCC 57.597 47.619 0.00 0.00 0.00 3.46
3015 3134 4.816925 ACTTTTGTCCTGCTAGAACACTTC 59.183 41.667 0.00 0.00 0.00 3.01
3017 3136 4.423625 ACTTTTGTCCTGCTAGAACACT 57.576 40.909 0.00 0.00 0.00 3.55
3018 3137 5.500645 AAACTTTTGTCCTGCTAGAACAC 57.499 39.130 0.00 0.00 0.00 3.32
3019 3138 6.151985 TGAAAAACTTTTGTCCTGCTAGAACA 59.848 34.615 0.00 0.00 0.00 3.18
3020 3139 6.560711 TGAAAAACTTTTGTCCTGCTAGAAC 58.439 36.000 0.00 0.00 0.00 3.01
3021 3140 6.767524 TGAAAAACTTTTGTCCTGCTAGAA 57.232 33.333 0.00 0.00 0.00 2.10
3023 3142 7.826260 TTTTGAAAAACTTTTGTCCTGCTAG 57.174 32.000 0.00 0.00 0.00 3.42
3025 3144 6.710295 ACTTTTTGAAAAACTTTTGTCCTGCT 59.290 30.769 0.00 0.00 0.00 4.24
3026 3145 6.898041 ACTTTTTGAAAAACTTTTGTCCTGC 58.102 32.000 0.00 0.00 0.00 4.85
3027 3146 8.082334 TGACTTTTTGAAAAACTTTTGTCCTG 57.918 30.769 13.57 0.00 0.00 3.86
3028 3147 8.669946 TTGACTTTTTGAAAAACTTTTGTCCT 57.330 26.923 13.57 0.00 0.00 3.85
3029 3148 9.891828 ATTTGACTTTTTGAAAAACTTTTGTCC 57.108 25.926 13.57 2.19 0.00 4.02
3113 3260 8.629158 GCCAAATAATTATCACTACATTCACCA 58.371 33.333 0.00 0.00 0.00 4.17
3114 3261 8.629158 TGCCAAATAATTATCACTACATTCACC 58.371 33.333 0.00 0.00 0.00 4.02
3115 3262 9.450807 GTGCCAAATAATTATCACTACATTCAC 57.549 33.333 0.00 0.00 0.00 3.18
3116 3263 9.407380 AGTGCCAAATAATTATCACTACATTCA 57.593 29.630 13.20 0.00 32.14 2.57
3117 3264 9.669353 CAGTGCCAAATAATTATCACTACATTC 57.331 33.333 14.03 0.00 32.45 2.67
3118 3265 9.189156 ACAGTGCCAAATAATTATCACTACATT 57.811 29.630 14.03 0.00 32.45 2.71
3119 3266 8.752005 ACAGTGCCAAATAATTATCACTACAT 57.248 30.769 14.03 4.54 32.45 2.29
3120 3267 9.325198 CTACAGTGCCAAATAATTATCACTACA 57.675 33.333 14.03 7.11 32.45 2.74
3132 3279 4.586841 ACAAAAAGCCTACAGTGCCAAATA 59.413 37.500 0.00 0.00 0.00 1.40
3139 3286 9.559958 CAATTTATAGACAAAAAGCCTACAGTG 57.440 33.333 0.00 0.00 0.00 3.66
3140 3287 9.297037 ACAATTTATAGACAAAAAGCCTACAGT 57.703 29.630 0.00 0.00 0.00 3.55
3141 3288 9.774742 GACAATTTATAGACAAAAAGCCTACAG 57.225 33.333 0.00 0.00 0.00 2.74
3250 3397 9.439500 AATTTCTGCATTGCAAAACTAATATGT 57.561 25.926 13.18 0.00 38.41 2.29
3251 3398 9.697250 CAATTTCTGCATTGCAAAACTAATATG 57.303 29.630 13.18 0.00 38.41 1.78
3252 3399 9.439500 ACAATTTCTGCATTGCAAAACTAATAT 57.561 25.926 13.18 0.00 38.41 1.28
3253 3400 8.830201 ACAATTTCTGCATTGCAAAACTAATA 57.170 26.923 13.18 0.00 38.41 0.98
3254 3401 7.733402 ACAATTTCTGCATTGCAAAACTAAT 57.267 28.000 13.18 5.40 38.41 1.73
3255 3402 7.495279 AGAACAATTTCTGCATTGCAAAACTAA 59.505 29.630 13.18 3.37 40.82 2.24
3256 3403 6.985645 AGAACAATTTCTGCATTGCAAAACTA 59.014 30.769 13.18 0.00 40.82 2.24
3257 3404 5.818857 AGAACAATTTCTGCATTGCAAAACT 59.181 32.000 13.18 0.00 40.82 2.66
3258 3405 6.051646 AGAACAATTTCTGCATTGCAAAAC 57.948 33.333 13.18 0.00 40.82 2.43
3266 3413 4.060205 GGCACAAAGAACAATTTCTGCAT 58.940 39.130 0.00 0.00 41.56 3.96
3270 3417 2.100584 TGCGGCACAAAGAACAATTTCT 59.899 40.909 0.00 0.00 44.53 2.52
3291 3438 1.686052 ACCGTTGGTGATTTGTTGCAT 59.314 42.857 0.00 0.00 32.98 3.96
3293 3440 2.217429 AACCGTTGGTGATTTGTTGC 57.783 45.000 0.00 0.00 35.34 4.17
3300 3447 8.725405 AAATTTTCTTTAAAACCGTTGGTGAT 57.275 26.923 0.00 0.00 37.41 3.06
3302 3449 9.089601 AGTAAATTTTCTTTAAAACCGTTGGTG 57.910 29.630 0.00 0.00 37.41 4.17
3303 3450 9.089601 CAGTAAATTTTCTTTAAAACCGTTGGT 57.910 29.630 0.00 0.00 37.41 3.67
3304 3451 9.303537 TCAGTAAATTTTCTTTAAAACCGTTGG 57.696 29.630 0.00 0.00 37.41 3.77
3306 3453 9.304731 GGTCAGTAAATTTTCTTTAAAACCGTT 57.695 29.630 0.00 0.00 37.41 4.44
3307 3454 8.689061 AGGTCAGTAAATTTTCTTTAAAACCGT 58.311 29.630 0.00 0.00 37.41 4.83
3308 3455 8.964150 CAGGTCAGTAAATTTTCTTTAAAACCG 58.036 33.333 0.00 0.00 37.41 4.44
3309 3456 9.811995 ACAGGTCAGTAAATTTTCTTTAAAACC 57.188 29.630 0.00 0.00 37.41 3.27
3315 3462 8.197439 CCTTGAACAGGTCAGTAAATTTTCTTT 58.803 33.333 0.00 0.00 37.61 2.52
3324 3471 2.637872 CCCTCCTTGAACAGGTCAGTAA 59.362 50.000 0.00 0.00 44.37 2.24
3325 3472 2.158219 TCCCTCCTTGAACAGGTCAGTA 60.158 50.000 0.00 0.00 44.37 2.74
3335 3482 6.374333 CGAATTCTGTTATTTCCCTCCTTGAA 59.626 38.462 3.52 0.00 0.00 2.69
3336 3483 5.880332 CGAATTCTGTTATTTCCCTCCTTGA 59.120 40.000 3.52 0.00 0.00 3.02
3338 3485 6.062258 TCGAATTCTGTTATTTCCCTCCTT 57.938 37.500 3.52 0.00 0.00 3.36
3340 3487 5.429130 ACTCGAATTCTGTTATTTCCCTCC 58.571 41.667 3.52 0.00 0.00 4.30
3341 3488 9.760077 TTATACTCGAATTCTGTTATTTCCCTC 57.240 33.333 3.52 0.00 0.00 4.30
3347 3494 9.847224 ACCCAATTATACTCGAATTCTGTTATT 57.153 29.630 3.52 2.08 0.00 1.40
3348 3495 9.847224 AACCCAATTATACTCGAATTCTGTTAT 57.153 29.630 3.52 0.13 0.00 1.89
3349 3496 9.675464 AAACCCAATTATACTCGAATTCTGTTA 57.325 29.630 3.52 0.00 0.00 2.41
3351 3498 7.610305 ACAAACCCAATTATACTCGAATTCTGT 59.390 33.333 3.52 5.17 0.00 3.41
3352 3499 7.985476 ACAAACCCAATTATACTCGAATTCTG 58.015 34.615 3.52 0.00 0.00 3.02
3354 3501 8.209917 AGACAAACCCAATTATACTCGAATTC 57.790 34.615 0.00 0.00 0.00 2.17
3356 3503 7.565680 AGAGACAAACCCAATTATACTCGAAT 58.434 34.615 0.00 0.00 0.00 3.34
3357 3504 6.942976 AGAGACAAACCCAATTATACTCGAA 58.057 36.000 0.00 0.00 0.00 3.71
3358 3505 6.540438 AGAGACAAACCCAATTATACTCGA 57.460 37.500 0.00 0.00 0.00 4.04
3359 3506 6.594159 ACAAGAGACAAACCCAATTATACTCG 59.406 38.462 0.00 0.00 0.00 4.18
3360 3507 7.923414 ACAAGAGACAAACCCAATTATACTC 57.077 36.000 0.00 0.00 0.00 2.59
3369 3516 5.304686 ACATCTTACAAGAGACAAACCCA 57.695 39.130 0.00 0.00 38.66 4.51
3377 3524 9.645059 CAATCACTCTTTACATCTTACAAGAGA 57.355 33.333 13.40 0.00 43.39 3.10
3378 3525 8.386606 GCAATCACTCTTTACATCTTACAAGAG 58.613 37.037 6.28 6.28 45.30 2.85
3380 3527 8.261492 AGCAATCACTCTTTACATCTTACAAG 57.739 34.615 0.00 0.00 0.00 3.16
3381 3528 9.371136 CTAGCAATCACTCTTTACATCTTACAA 57.629 33.333 0.00 0.00 0.00 2.41
3383 3530 7.042389 GGCTAGCAATCACTCTTTACATCTTAC 60.042 40.741 18.24 0.00 0.00 2.34
3384 3531 6.986817 GGCTAGCAATCACTCTTTACATCTTA 59.013 38.462 18.24 0.00 0.00 2.10
3387 3534 5.118990 TGGCTAGCAATCACTCTTTACATC 58.881 41.667 18.24 0.00 0.00 3.06
3388 3535 5.102953 TGGCTAGCAATCACTCTTTACAT 57.897 39.130 18.24 0.00 0.00 2.29
3389 3536 4.551702 TGGCTAGCAATCACTCTTTACA 57.448 40.909 18.24 0.00 0.00 2.41
3390 3537 5.181245 TGTTTGGCTAGCAATCACTCTTTAC 59.819 40.000 18.24 2.18 0.00 2.01
3391 3538 5.312895 TGTTTGGCTAGCAATCACTCTTTA 58.687 37.500 18.24 0.00 0.00 1.85
3392 3539 4.144297 TGTTTGGCTAGCAATCACTCTTT 58.856 39.130 18.24 0.00 0.00 2.52
3393 3540 3.754965 TGTTTGGCTAGCAATCACTCTT 58.245 40.909 18.24 0.00 0.00 2.85
3394 3541 3.341823 CTGTTTGGCTAGCAATCACTCT 58.658 45.455 18.24 0.00 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.