Multiple sequence alignment - TraesCS3D01G085100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G085100 chr3D 100.000 4508 0 0 1 4508 42893829 42889322 0.000000e+00 8325
1 TraesCS3D01G085100 chr3D 99.415 171 1 0 601 771 336587992 336588162 1.220000e-80 311
2 TraesCS3D01G085100 chr3D 98.305 177 2 1 607 782 66122841 66122665 4.380000e-80 309
3 TraesCS3D01G085100 chr3B 96.275 3570 100 12 943 4507 66805470 66801929 0.000000e+00 5825
4 TraesCS3D01G085100 chr3B 91.459 562 36 4 3947 4506 754763273 754763824 0.000000e+00 761
5 TraesCS3D01G085100 chr3B 90.787 445 31 5 1 436 66806069 66805626 1.810000e-163 586
6 TraesCS3D01G085100 chr3A 96.578 3156 80 7 924 4076 54886034 54882904 0.000000e+00 5204
7 TraesCS3D01G085100 chr3A 89.689 611 37 8 1 609 54929872 54929286 0.000000e+00 756
8 TraesCS3D01G085100 chr3A 93.779 434 18 2 4075 4508 54882742 54882318 1.060000e-180 643
9 TraesCS3D01G085100 chr3A 95.636 275 10 2 1 275 54936040 54935768 1.490000e-119 440
10 TraesCS3D01G085100 chr3A 91.608 286 20 3 27 310 54982574 54982291 4.230000e-105 392
11 TraesCS3D01G085100 chr3A 89.815 216 13 2 300 515 54935769 54935563 7.430000e-68 268
12 TraesCS3D01G085100 chr6B 91.146 576 34 7 3933 4506 49374500 49373940 0.000000e+00 765
13 TraesCS3D01G085100 chr6B 89.641 473 36 3 4036 4506 706234663 706235124 1.400000e-164 590
14 TraesCS3D01G085100 chr6B 88.378 413 38 2 4096 4506 706029555 706029959 5.240000e-134 488
15 TraesCS3D01G085100 chr4B 85.736 659 60 12 3653 4305 646220696 646221326 0.000000e+00 665
16 TraesCS3D01G085100 chr4B 85.736 659 58 13 3653 4305 351618007 351617379 0.000000e+00 664
17 TraesCS3D01G085100 chr2A 85.736 659 60 12 3653 4305 692227539 692228169 0.000000e+00 665
18 TraesCS3D01G085100 chr2A 94.667 225 12 0 2497 2721 266078002 266078226 2.580000e-92 350
19 TraesCS3D01G085100 chr7A 85.417 672 61 11 3640 4305 31952835 31952195 0.000000e+00 664
20 TraesCS3D01G085100 chr7A 85.268 672 62 11 3640 4305 31924586 31923946 0.000000e+00 658
21 TraesCS3D01G085100 chr7A 85.129 659 64 12 3653 4305 220510284 220509654 1.060000e-180 643
22 TraesCS3D01G085100 chr1B 85.355 676 60 11 3636 4305 330226497 330227139 0.000000e+00 664
23 TraesCS3D01G085100 chr5B 85.584 659 61 12 3653 4305 600927146 600927776 0.000000e+00 660
24 TraesCS3D01G085100 chr5B 90.021 481 36 3 4028 4506 119416390 119416860 2.980000e-171 612
25 TraesCS3D01G085100 chrUn 85.268 672 62 11 3640 4305 317739980 317739340 0.000000e+00 658
26 TraesCS3D01G085100 chr2B 89.813 481 37 3 4028 4506 17578173 17577703 1.390000e-169 606
27 TraesCS3D01G085100 chr2B 90.533 338 25 5 3639 3973 770715784 770715451 1.490000e-119 440
28 TraesCS3D01G085100 chr7B 88.856 341 27 8 3639 3973 704462484 704462819 4.200000e-110 409
29 TraesCS3D01G085100 chr7D 89.803 304 23 6 3629 3929 618365741 618366039 2.540000e-102 383
30 TraesCS3D01G085100 chr7D 98.286 175 2 1 608 782 185180389 185180216 5.670000e-79 305
31 TraesCS3D01G085100 chr7D 97.714 175 4 0 597 771 102575929 102576103 7.330000e-78 302
32 TraesCS3D01G085100 chr7D 95.213 188 7 1 608 795 14654684 14654499 3.410000e-76 296
33 TraesCS3D01G085100 chr7D 96.133 181 7 0 593 773 32014249 32014429 3.410000e-76 296
34 TraesCS3D01G085100 chr7D 89.655 174 16 1 4335 4506 618370166 618370339 2.110000e-53 220
35 TraesCS3D01G085100 chr4D 99.401 167 1 0 605 771 113187150 113186984 2.040000e-78 303
36 TraesCS3D01G085100 chr5D 95.213 188 7 2 601 786 51932413 51932226 3.410000e-76 296
37 TraesCS3D01G085100 chr2D 96.133 181 6 1 604 784 641099194 641099373 1.230000e-75 294


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G085100 chr3D 42889322 42893829 4507 True 8325.0 8325 100.0000 1 4508 1 chr3D.!!$R1 4507
1 TraesCS3D01G085100 chr3B 66801929 66806069 4140 True 3205.5 5825 93.5310 1 4507 2 chr3B.!!$R1 4506
2 TraesCS3D01G085100 chr3B 754763273 754763824 551 False 761.0 761 91.4590 3947 4506 1 chr3B.!!$F1 559
3 TraesCS3D01G085100 chr3A 54882318 54886034 3716 True 2923.5 5204 95.1785 924 4508 2 chr3A.!!$R3 3584
4 TraesCS3D01G085100 chr3A 54929286 54929872 586 True 756.0 756 89.6890 1 609 1 chr3A.!!$R1 608
5 TraesCS3D01G085100 chr6B 49373940 49374500 560 True 765.0 765 91.1460 3933 4506 1 chr6B.!!$R1 573
6 TraesCS3D01G085100 chr4B 646220696 646221326 630 False 665.0 665 85.7360 3653 4305 1 chr4B.!!$F1 652
7 TraesCS3D01G085100 chr4B 351617379 351618007 628 True 664.0 664 85.7360 3653 4305 1 chr4B.!!$R1 652
8 TraesCS3D01G085100 chr2A 692227539 692228169 630 False 665.0 665 85.7360 3653 4305 1 chr2A.!!$F2 652
9 TraesCS3D01G085100 chr7A 31952195 31952835 640 True 664.0 664 85.4170 3640 4305 1 chr7A.!!$R2 665
10 TraesCS3D01G085100 chr7A 31923946 31924586 640 True 658.0 658 85.2680 3640 4305 1 chr7A.!!$R1 665
11 TraesCS3D01G085100 chr7A 220509654 220510284 630 True 643.0 643 85.1290 3653 4305 1 chr7A.!!$R3 652
12 TraesCS3D01G085100 chr1B 330226497 330227139 642 False 664.0 664 85.3550 3636 4305 1 chr1B.!!$F1 669
13 TraesCS3D01G085100 chr5B 600927146 600927776 630 False 660.0 660 85.5840 3653 4305 1 chr5B.!!$F2 652
14 TraesCS3D01G085100 chrUn 317739340 317739980 640 True 658.0 658 85.2680 3640 4305 1 chrUn.!!$R1 665

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
621 631 0.108281 GCAACTACTCCCTCCGTTCC 60.108 60.0 0.00 0.0 0.00 3.62 F
855 865 0.321346 TGTGGCGATGCTTCAGAAGA 59.679 50.0 14.86 0.0 0.00 2.87 F
1891 1914 0.315869 CTCGGTGCACAACGTGTTTC 60.316 55.0 20.43 0.0 43.08 2.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1638 1661 0.742281 CCTGGAACACTCTCATGCCG 60.742 60.0 0.0 0.0 0.0 5.69 R
1926 1949 1.088340 CCATCTCAGCAAGGCAGTCG 61.088 60.0 0.0 0.0 0.0 4.18 R
3850 3876 0.810648 GCACGAAGGCAATGGATTCA 59.189 50.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 2.830923 CCAGATAACCAATGTTGCCCAA 59.169 45.455 0.00 0.00 35.87 4.12
159 163 4.081642 GTCTCATCACCACTACTGGCTAAA 60.082 45.833 0.00 0.00 42.08 1.85
257 267 2.176045 TGTAGCTCGGAATCACTTGGA 58.824 47.619 0.00 0.00 0.00 3.53
382 392 3.953612 TGCCGAGGAAATATGCAAAATCT 59.046 39.130 0.00 0.00 0.00 2.40
387 397 7.080099 CCGAGGAAATATGCAAAATCTGTATG 58.920 38.462 0.00 0.00 32.02 2.39
436 446 4.397420 TGTGTGGCACTATGAAAAGTCAT 58.603 39.130 19.83 0.00 38.92 3.06
439 449 5.411361 GTGTGGCACTATGAAAAGTCATGTA 59.589 40.000 19.83 0.00 44.49 2.29
440 450 5.643348 TGTGGCACTATGAAAAGTCATGTAG 59.357 40.000 19.83 0.00 44.49 2.74
446 456 8.454106 GCACTATGAAAAGTCATGTAGTTTCAT 58.546 33.333 23.59 23.59 46.84 2.57
515 525 4.717629 TGCCGCCTCGAGTTCGTG 62.718 66.667 12.31 9.39 40.80 4.35
549 559 2.288948 TGTTTGCAGCATTTGGGATGTC 60.289 45.455 0.00 0.00 0.00 3.06
555 565 3.305813 GCAGCATTTGGGATGTCATATGG 60.306 47.826 2.13 0.00 30.36 2.74
570 580 4.294523 TGGAAATCCAAGGCGTCG 57.705 55.556 0.00 0.00 44.35 5.12
571 581 1.376683 TGGAAATCCAAGGCGTCGG 60.377 57.895 0.00 0.00 44.35 4.79
572 582 1.078708 GGAAATCCAAGGCGTCGGA 60.079 57.895 0.00 0.00 35.64 4.55
573 583 1.090052 GGAAATCCAAGGCGTCGGAG 61.090 60.000 0.00 0.00 33.97 4.63
574 584 0.108329 GAAATCCAAGGCGTCGGAGA 60.108 55.000 0.00 0.00 33.97 3.71
575 585 0.323629 AAATCCAAGGCGTCGGAGAA 59.676 50.000 0.00 0.00 39.69 2.87
576 586 0.323629 AATCCAAGGCGTCGGAGAAA 59.676 50.000 0.00 0.00 39.69 2.52
577 587 0.323629 ATCCAAGGCGTCGGAGAAAA 59.676 50.000 0.00 0.00 39.69 2.29
578 588 0.323629 TCCAAGGCGTCGGAGAAAAT 59.676 50.000 0.00 0.00 39.69 1.82
579 589 0.727398 CCAAGGCGTCGGAGAAAATC 59.273 55.000 0.00 0.00 39.69 2.17
580 590 1.438651 CAAGGCGTCGGAGAAAATCA 58.561 50.000 0.00 0.00 39.69 2.57
581 591 2.009774 CAAGGCGTCGGAGAAAATCAT 58.990 47.619 0.00 0.00 39.69 2.45
582 592 3.194861 CAAGGCGTCGGAGAAAATCATA 58.805 45.455 0.00 0.00 39.69 2.15
583 593 3.536956 AGGCGTCGGAGAAAATCATAA 57.463 42.857 0.00 0.00 39.69 1.90
584 594 4.073293 AGGCGTCGGAGAAAATCATAAT 57.927 40.909 0.00 0.00 39.69 1.28
585 595 4.451900 AGGCGTCGGAGAAAATCATAATT 58.548 39.130 0.00 0.00 39.69 1.40
586 596 4.881850 AGGCGTCGGAGAAAATCATAATTT 59.118 37.500 0.00 0.00 39.69 1.82
587 597 5.357032 AGGCGTCGGAGAAAATCATAATTTT 59.643 36.000 0.00 0.00 45.55 1.82
588 598 5.455525 GGCGTCGGAGAAAATCATAATTTTG 59.544 40.000 0.00 0.00 43.48 2.44
589 599 5.455525 GCGTCGGAGAAAATCATAATTTTGG 59.544 40.000 0.00 0.00 43.48 3.28
590 600 5.971202 CGTCGGAGAAAATCATAATTTTGGG 59.029 40.000 0.00 0.00 43.48 4.12
591 601 6.183360 CGTCGGAGAAAATCATAATTTTGGGA 60.183 38.462 0.00 0.00 43.48 4.37
592 602 7.468631 CGTCGGAGAAAATCATAATTTTGGGAT 60.469 37.037 0.00 0.00 43.48 3.85
593 603 8.197439 GTCGGAGAAAATCATAATTTTGGGATT 58.803 33.333 0.00 0.00 43.48 3.01
594 604 8.196771 TCGGAGAAAATCATAATTTTGGGATTG 58.803 33.333 0.00 0.00 43.48 2.67
595 605 7.439056 CGGAGAAAATCATAATTTTGGGATTGG 59.561 37.037 0.00 0.00 43.48 3.16
596 606 8.485392 GGAGAAAATCATAATTTTGGGATTGGA 58.515 33.333 0.00 0.00 43.48 3.53
598 608 9.841295 AGAAAATCATAATTTTGGGATTGGATG 57.159 29.630 0.00 0.00 43.48 3.51
599 609 8.983702 AAAATCATAATTTTGGGATTGGATGG 57.016 30.769 0.00 0.00 42.21 3.51
600 610 7.695074 AATCATAATTTTGGGATTGGATGGT 57.305 32.000 0.00 0.00 0.00 3.55
601 611 8.795899 AATCATAATTTTGGGATTGGATGGTA 57.204 30.769 0.00 0.00 0.00 3.25
602 612 7.838079 TCATAATTTTGGGATTGGATGGTAG 57.162 36.000 0.00 0.00 0.00 3.18
603 613 6.267471 TCATAATTTTGGGATTGGATGGTAGC 59.733 38.462 0.00 0.00 0.00 3.58
604 614 3.464720 TTTTGGGATTGGATGGTAGCA 57.535 42.857 0.00 0.00 0.00 3.49
605 615 3.464720 TTTGGGATTGGATGGTAGCAA 57.535 42.857 0.00 0.00 0.00 3.91
606 616 2.435372 TGGGATTGGATGGTAGCAAC 57.565 50.000 0.00 0.00 0.00 4.17
607 617 1.922447 TGGGATTGGATGGTAGCAACT 59.078 47.619 0.00 0.00 0.00 3.16
608 618 3.119319 TGGGATTGGATGGTAGCAACTA 58.881 45.455 0.00 0.00 0.00 2.24
609 619 3.118038 TGGGATTGGATGGTAGCAACTAC 60.118 47.826 0.00 0.00 36.33 2.73
610 620 3.136626 GGGATTGGATGGTAGCAACTACT 59.863 47.826 0.00 0.00 37.16 2.57
611 621 4.381411 GGATTGGATGGTAGCAACTACTC 58.619 47.826 0.00 0.00 37.16 2.59
612 622 3.906720 TTGGATGGTAGCAACTACTCC 57.093 47.619 0.00 1.24 37.16 3.85
613 623 2.116238 TGGATGGTAGCAACTACTCCC 58.884 52.381 8.61 6.96 37.16 4.30
614 624 2.292918 TGGATGGTAGCAACTACTCCCT 60.293 50.000 8.61 0.00 37.16 4.20
615 625 2.365941 GGATGGTAGCAACTACTCCCTC 59.634 54.545 0.00 0.00 37.16 4.30
616 626 1.861982 TGGTAGCAACTACTCCCTCC 58.138 55.000 4.86 0.00 37.16 4.30
617 627 0.745468 GGTAGCAACTACTCCCTCCG 59.255 60.000 4.86 0.00 37.16 4.63
618 628 1.472188 GTAGCAACTACTCCCTCCGT 58.528 55.000 0.00 0.00 34.45 4.69
619 629 1.823610 GTAGCAACTACTCCCTCCGTT 59.176 52.381 0.00 0.00 34.45 4.44
620 630 0.896226 AGCAACTACTCCCTCCGTTC 59.104 55.000 0.00 0.00 0.00 3.95
621 631 0.108281 GCAACTACTCCCTCCGTTCC 60.108 60.000 0.00 0.00 0.00 3.62
622 632 1.558233 CAACTACTCCCTCCGTTCCT 58.442 55.000 0.00 0.00 0.00 3.36
623 633 2.731572 CAACTACTCCCTCCGTTCCTA 58.268 52.381 0.00 0.00 0.00 2.94
624 634 3.094572 CAACTACTCCCTCCGTTCCTAA 58.905 50.000 0.00 0.00 0.00 2.69
625 635 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
626 636 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
627 637 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
628 638 4.892345 ACTACTCCCTCCGTTCCTAAATAC 59.108 45.833 0.00 0.00 0.00 1.89
629 639 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
630 640 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
631 641 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
632 642 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
633 643 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
634 644 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
635 645 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
636 646 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
637 647 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
638 648 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
639 649 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
640 650 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
641 651 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
642 652 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
643 653 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
644 654 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
645 655 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
646 656 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
648 658 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
649 659 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
650 660 6.959639 ACTTGTCTTTCTAGGCATTTCAAA 57.040 33.333 0.00 0.00 35.56 2.69
651 661 7.530426 ACTTGTCTTTCTAGGCATTTCAAAT 57.470 32.000 0.00 0.00 35.56 2.32
652 662 7.373493 ACTTGTCTTTCTAGGCATTTCAAATG 58.627 34.615 5.68 5.68 35.56 2.32
653 663 7.231317 ACTTGTCTTTCTAGGCATTTCAAATGA 59.769 33.333 14.65 0.00 35.56 2.57
654 664 6.913170 TGTCTTTCTAGGCATTTCAAATGAC 58.087 36.000 14.65 11.48 29.10 3.06
655 665 6.716628 TGTCTTTCTAGGCATTTCAAATGACT 59.283 34.615 22.35 22.35 41.04 3.41
656 666 7.882791 TGTCTTTCTAGGCATTTCAAATGACTA 59.117 33.333 22.19 22.19 38.54 2.59
657 667 8.897752 GTCTTTCTAGGCATTTCAAATGACTAT 58.102 33.333 23.50 4.64 38.80 2.12
658 668 9.113838 TCTTTCTAGGCATTTCAAATGACTATC 57.886 33.333 23.50 1.52 38.80 2.08
659 669 8.806429 TTTCTAGGCATTTCAAATGACTATCA 57.194 30.769 23.50 12.23 38.80 2.15
660 670 7.792374 TCTAGGCATTTCAAATGACTATCAC 57.208 36.000 23.50 0.15 38.80 3.06
661 671 7.337938 TCTAGGCATTTCAAATGACTATCACA 58.662 34.615 23.50 5.75 38.80 3.58
662 672 7.994911 TCTAGGCATTTCAAATGACTATCACAT 59.005 33.333 23.50 1.77 38.80 3.21
663 673 9.276590 CTAGGCATTTCAAATGACTATCACATA 57.723 33.333 23.50 4.36 38.80 2.29
664 674 7.934457 AGGCATTTCAAATGACTATCACATAC 58.066 34.615 17.52 0.00 35.20 2.39
665 675 6.852853 GGCATTTCAAATGACTATCACATACG 59.147 38.462 14.65 0.00 0.00 3.06
666 676 6.852853 GCATTTCAAATGACTATCACATACGG 59.147 38.462 14.65 0.00 0.00 4.02
667 677 7.254761 GCATTTCAAATGACTATCACATACGGA 60.255 37.037 14.65 0.00 0.00 4.69
668 678 8.777413 CATTTCAAATGACTATCACATACGGAT 58.223 33.333 3.82 0.00 0.00 4.18
669 679 7.713764 TTCAAATGACTATCACATACGGATG 57.286 36.000 5.94 5.94 39.16 3.51
671 681 7.947282 TCAAATGACTATCACATACGGATGTA 58.053 34.615 14.23 2.61 44.82 2.29
672 682 8.585018 TCAAATGACTATCACATACGGATGTAT 58.415 33.333 14.23 10.02 44.82 2.29
713 723 7.036220 AGTGTAGATTCACTCATTTTACTCCG 58.964 38.462 0.00 0.00 44.07 4.63
714 724 6.812160 GTGTAGATTCACTCATTTTACTCCGT 59.188 38.462 0.00 0.00 35.68 4.69
715 725 7.972277 GTGTAGATTCACTCATTTTACTCCGTA 59.028 37.037 0.00 0.00 35.68 4.02
716 726 8.692710 TGTAGATTCACTCATTTTACTCCGTAT 58.307 33.333 0.00 0.00 0.00 3.06
717 727 8.969267 GTAGATTCACTCATTTTACTCCGTATG 58.031 37.037 0.00 0.00 0.00 2.39
718 728 7.556844 AGATTCACTCATTTTACTCCGTATGT 58.443 34.615 0.00 0.00 0.00 2.29
719 729 8.692710 AGATTCACTCATTTTACTCCGTATGTA 58.307 33.333 0.00 0.00 0.00 2.29
720 730 8.873215 ATTCACTCATTTTACTCCGTATGTAG 57.127 34.615 0.00 0.00 0.00 2.74
721 731 7.400599 TCACTCATTTTACTCCGTATGTAGT 57.599 36.000 0.00 0.00 0.00 2.73
722 732 7.478322 TCACTCATTTTACTCCGTATGTAGTC 58.522 38.462 0.00 0.00 0.00 2.59
723 733 7.121611 TCACTCATTTTACTCCGTATGTAGTCA 59.878 37.037 0.00 0.00 0.00 3.41
724 734 7.220300 CACTCATTTTACTCCGTATGTAGTCAC 59.780 40.741 0.00 0.00 0.00 3.67
725 735 7.122353 ACTCATTTTACTCCGTATGTAGTCACT 59.878 37.037 0.00 0.00 0.00 3.41
726 736 7.833786 TCATTTTACTCCGTATGTAGTCACTT 58.166 34.615 0.00 0.00 0.00 3.16
727 737 7.758076 TCATTTTACTCCGTATGTAGTCACTTG 59.242 37.037 0.00 0.00 0.00 3.16
728 738 6.579666 TTTACTCCGTATGTAGTCACTTGT 57.420 37.500 0.00 0.00 0.00 3.16
729 739 6.579666 TTACTCCGTATGTAGTCACTTGTT 57.420 37.500 0.00 0.00 0.00 2.83
730 740 4.806330 ACTCCGTATGTAGTCACTTGTTG 58.194 43.478 0.00 0.00 0.00 3.33
731 741 4.521639 ACTCCGTATGTAGTCACTTGTTGA 59.478 41.667 0.00 0.00 0.00 3.18
732 742 5.010314 ACTCCGTATGTAGTCACTTGTTGAA 59.990 40.000 0.00 0.00 35.39 2.69
733 743 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
734 744 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
735 745 6.367695 TCCGTATGTAGTCACTTGTTGAAATG 59.632 38.462 0.00 0.00 35.39 2.32
736 746 6.015504 CGTATGTAGTCACTTGTTGAAATGC 58.984 40.000 0.00 0.00 35.39 3.56
737 747 4.829064 TGTAGTCACTTGTTGAAATGCC 57.171 40.909 0.00 0.00 35.39 4.40
738 748 4.460263 TGTAGTCACTTGTTGAAATGCCT 58.540 39.130 0.00 0.00 35.39 4.75
739 749 5.616270 TGTAGTCACTTGTTGAAATGCCTA 58.384 37.500 0.00 0.00 35.39 3.93
740 750 6.058833 TGTAGTCACTTGTTGAAATGCCTAA 58.941 36.000 0.00 0.00 35.39 2.69
741 751 6.544197 TGTAGTCACTTGTTGAAATGCCTAAA 59.456 34.615 0.00 0.00 35.39 1.85
742 752 6.463995 AGTCACTTGTTGAAATGCCTAAAA 57.536 33.333 0.00 0.00 35.39 1.52
743 753 6.872920 AGTCACTTGTTGAAATGCCTAAAAA 58.127 32.000 0.00 0.00 35.39 1.94
744 754 6.980397 AGTCACTTGTTGAAATGCCTAAAAAG 59.020 34.615 0.00 0.00 35.39 2.27
745 755 6.978080 GTCACTTGTTGAAATGCCTAAAAAGA 59.022 34.615 0.00 0.00 35.39 2.52
746 756 6.978080 TCACTTGTTGAAATGCCTAAAAAGAC 59.022 34.615 0.00 0.00 0.00 3.01
747 757 6.756074 CACTTGTTGAAATGCCTAAAAAGACA 59.244 34.615 0.00 0.00 0.00 3.41
748 758 7.277539 CACTTGTTGAAATGCCTAAAAAGACAA 59.722 33.333 0.00 0.00 0.00 3.18
749 759 7.492344 ACTTGTTGAAATGCCTAAAAAGACAAG 59.508 33.333 0.00 0.00 43.36 3.16
750 760 6.872920 TGTTGAAATGCCTAAAAAGACAAGT 58.127 32.000 0.00 0.00 0.00 3.16
751 761 8.001881 TGTTGAAATGCCTAAAAAGACAAGTA 57.998 30.769 0.00 0.00 0.00 2.24
752 762 8.637986 TGTTGAAATGCCTAAAAAGACAAGTAT 58.362 29.630 0.00 0.00 0.00 2.12
753 763 9.476202 GTTGAAATGCCTAAAAAGACAAGTATT 57.524 29.630 0.00 0.00 0.00 1.89
763 773 9.211485 CTAAAAAGACAAGTATTTAGGAACGGA 57.789 33.333 0.00 0.00 33.69 4.69
764 774 7.668525 AAAAGACAAGTATTTAGGAACGGAG 57.331 36.000 0.00 0.00 0.00 4.63
765 775 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
766 776 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
767 777 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
768 778 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
769 779 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
770 780 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
771 781 5.522641 AGTATTTAGGAACGGAGGGAGTAA 58.477 41.667 0.00 0.00 0.00 2.24
772 782 6.141790 AGTATTTAGGAACGGAGGGAGTAAT 58.858 40.000 0.00 0.00 0.00 1.89
773 783 7.300658 AGTATTTAGGAACGGAGGGAGTAATA 58.699 38.462 0.00 0.00 0.00 0.98
774 784 5.859205 TTTAGGAACGGAGGGAGTAATAC 57.141 43.478 0.00 0.00 0.00 1.89
775 785 3.684408 AGGAACGGAGGGAGTAATACT 57.316 47.619 0.00 0.00 0.00 2.12
776 786 3.991683 AGGAACGGAGGGAGTAATACTT 58.008 45.455 0.00 0.00 0.00 2.24
777 787 4.359996 AGGAACGGAGGGAGTAATACTTT 58.640 43.478 0.00 0.00 0.00 2.66
778 788 5.522641 AGGAACGGAGGGAGTAATACTTTA 58.477 41.667 0.00 0.00 0.00 1.85
779 789 5.597594 AGGAACGGAGGGAGTAATACTTTAG 59.402 44.000 0.00 0.00 0.00 1.85
780 790 4.933505 ACGGAGGGAGTAATACTTTAGC 57.066 45.455 0.00 0.00 0.00 3.09
781 791 4.544683 ACGGAGGGAGTAATACTTTAGCT 58.455 43.478 0.00 0.00 0.00 3.32
782 792 5.699143 ACGGAGGGAGTAATACTTTAGCTA 58.301 41.667 0.00 0.00 0.00 3.32
783 793 5.534278 ACGGAGGGAGTAATACTTTAGCTAC 59.466 44.000 0.00 0.00 0.00 3.58
784 794 5.048154 CGGAGGGAGTAATACTTTAGCTACC 60.048 48.000 0.00 0.00 0.00 3.18
785 795 5.837438 GGAGGGAGTAATACTTTAGCTACCA 59.163 44.000 0.00 0.00 32.69 3.25
786 796 6.325804 GGAGGGAGTAATACTTTAGCTACCAA 59.674 42.308 0.00 0.00 32.69 3.67
787 797 7.147602 GGAGGGAGTAATACTTTAGCTACCAAA 60.148 40.741 0.00 0.00 32.69 3.28
788 798 7.563020 AGGGAGTAATACTTTAGCTACCAAAC 58.437 38.462 0.00 0.00 32.69 2.93
789 799 7.181485 AGGGAGTAATACTTTAGCTACCAAACA 59.819 37.037 0.00 0.00 32.69 2.83
790 800 7.279536 GGGAGTAATACTTTAGCTACCAAACAC 59.720 40.741 0.00 0.00 30.69 3.32
791 801 7.820872 GGAGTAATACTTTAGCTACCAAACACA 59.179 37.037 0.00 0.00 0.00 3.72
792 802 9.211485 GAGTAATACTTTAGCTACCAAACACAA 57.789 33.333 0.00 0.00 0.00 3.33
793 803 9.734984 AGTAATACTTTAGCTACCAAACACAAT 57.265 29.630 0.00 0.00 0.00 2.71
798 808 7.654568 ACTTTAGCTACCAAACACAATAAACC 58.345 34.615 0.00 0.00 0.00 3.27
799 809 4.759516 AGCTACCAAACACAATAAACCG 57.240 40.909 0.00 0.00 0.00 4.44
800 810 4.391155 AGCTACCAAACACAATAAACCGA 58.609 39.130 0.00 0.00 0.00 4.69
801 811 4.822896 AGCTACCAAACACAATAAACCGAA 59.177 37.500 0.00 0.00 0.00 4.30
802 812 5.048991 AGCTACCAAACACAATAAACCGAAG 60.049 40.000 0.00 0.00 0.00 3.79
803 813 5.049267 GCTACCAAACACAATAAACCGAAGA 60.049 40.000 0.00 0.00 0.00 2.87
804 814 5.432885 ACCAAACACAATAAACCGAAGAG 57.567 39.130 0.00 0.00 0.00 2.85
805 815 5.127491 ACCAAACACAATAAACCGAAGAGA 58.873 37.500 0.00 0.00 0.00 3.10
806 816 5.591067 ACCAAACACAATAAACCGAAGAGAA 59.409 36.000 0.00 0.00 0.00 2.87
807 817 5.912955 CCAAACACAATAAACCGAAGAGAAC 59.087 40.000 0.00 0.00 0.00 3.01
808 818 6.459024 CCAAACACAATAAACCGAAGAGAACA 60.459 38.462 0.00 0.00 0.00 3.18
809 819 6.877611 AACACAATAAACCGAAGAGAACAT 57.122 33.333 0.00 0.00 0.00 2.71
810 820 6.877611 ACACAATAAACCGAAGAGAACATT 57.122 33.333 0.00 0.00 0.00 2.71
811 821 7.972832 ACACAATAAACCGAAGAGAACATTA 57.027 32.000 0.00 0.00 0.00 1.90
812 822 8.029642 ACACAATAAACCGAAGAGAACATTAG 57.970 34.615 0.00 0.00 0.00 1.73
813 823 7.876068 ACACAATAAACCGAAGAGAACATTAGA 59.124 33.333 0.00 0.00 0.00 2.10
814 824 8.717821 CACAATAAACCGAAGAGAACATTAGAA 58.282 33.333 0.00 0.00 0.00 2.10
815 825 8.718734 ACAATAAACCGAAGAGAACATTAGAAC 58.281 33.333 0.00 0.00 0.00 3.01
816 826 8.936864 CAATAAACCGAAGAGAACATTAGAACT 58.063 33.333 0.00 0.00 0.00 3.01
817 827 9.503399 AATAAACCGAAGAGAACATTAGAACTT 57.497 29.630 0.00 0.00 0.00 2.66
818 828 6.787085 AACCGAAGAGAACATTAGAACTTG 57.213 37.500 0.00 0.00 0.00 3.16
819 829 4.691216 ACCGAAGAGAACATTAGAACTTGC 59.309 41.667 0.00 0.00 0.00 4.01
820 830 4.932200 CCGAAGAGAACATTAGAACTTGCT 59.068 41.667 0.00 0.00 0.00 3.91
821 831 5.163913 CCGAAGAGAACATTAGAACTTGCTG 60.164 44.000 0.00 0.00 0.00 4.41
822 832 5.635280 CGAAGAGAACATTAGAACTTGCTGA 59.365 40.000 0.00 0.00 0.00 4.26
823 833 6.312426 CGAAGAGAACATTAGAACTTGCTGAT 59.688 38.462 0.00 0.00 0.00 2.90
824 834 6.981762 AGAGAACATTAGAACTTGCTGATG 57.018 37.500 0.00 0.00 37.74 3.07
825 835 6.471146 AGAGAACATTAGAACTTGCTGATGT 58.529 36.000 0.00 0.00 44.10 3.06
829 839 6.017400 ACATTAGAACTTGCTGATGTTTGG 57.983 37.500 0.00 0.00 40.80 3.28
830 840 5.769662 ACATTAGAACTTGCTGATGTTTGGA 59.230 36.000 0.00 0.00 40.80 3.53
831 841 5.689383 TTAGAACTTGCTGATGTTTGGAC 57.311 39.130 0.00 0.00 0.00 4.02
832 842 3.825328 AGAACTTGCTGATGTTTGGACT 58.175 40.909 0.00 0.00 0.00 3.85
833 843 4.973168 AGAACTTGCTGATGTTTGGACTA 58.027 39.130 0.00 0.00 0.00 2.59
834 844 5.564550 AGAACTTGCTGATGTTTGGACTAT 58.435 37.500 0.00 0.00 0.00 2.12
835 845 6.006449 AGAACTTGCTGATGTTTGGACTATT 58.994 36.000 0.00 0.00 0.00 1.73
836 846 6.491403 AGAACTTGCTGATGTTTGGACTATTT 59.509 34.615 0.00 0.00 0.00 1.40
837 847 6.017400 ACTTGCTGATGTTTGGACTATTTG 57.983 37.500 0.00 0.00 0.00 2.32
838 848 5.536161 ACTTGCTGATGTTTGGACTATTTGT 59.464 36.000 0.00 0.00 0.00 2.83
839 849 5.375417 TGCTGATGTTTGGACTATTTGTG 57.625 39.130 0.00 0.00 0.00 3.33
840 850 4.218200 TGCTGATGTTTGGACTATTTGTGG 59.782 41.667 0.00 0.00 0.00 4.17
841 851 4.737054 CTGATGTTTGGACTATTTGTGGC 58.263 43.478 0.00 0.00 0.00 5.01
842 852 3.190327 TGATGTTTGGACTATTTGTGGCG 59.810 43.478 0.00 0.00 0.00 5.69
843 853 2.852449 TGTTTGGACTATTTGTGGCGA 58.148 42.857 0.00 0.00 0.00 5.54
844 854 3.417101 TGTTTGGACTATTTGTGGCGAT 58.583 40.909 0.00 0.00 0.00 4.58
845 855 3.190327 TGTTTGGACTATTTGTGGCGATG 59.810 43.478 0.00 0.00 0.00 3.84
846 856 1.378531 TGGACTATTTGTGGCGATGC 58.621 50.000 0.00 0.00 0.00 3.91
847 857 1.065491 TGGACTATTTGTGGCGATGCT 60.065 47.619 0.00 0.00 0.00 3.79
848 858 2.017049 GGACTATTTGTGGCGATGCTT 58.983 47.619 0.00 0.00 0.00 3.91
849 859 2.032178 GGACTATTTGTGGCGATGCTTC 59.968 50.000 0.00 0.00 0.00 3.86
850 860 2.677836 GACTATTTGTGGCGATGCTTCA 59.322 45.455 0.08 0.00 0.00 3.02
851 861 2.679837 ACTATTTGTGGCGATGCTTCAG 59.320 45.455 0.08 0.00 0.00 3.02
852 862 1.825090 ATTTGTGGCGATGCTTCAGA 58.175 45.000 0.08 0.00 0.00 3.27
853 863 1.603456 TTTGTGGCGATGCTTCAGAA 58.397 45.000 0.08 0.00 0.00 3.02
854 864 1.159285 TTGTGGCGATGCTTCAGAAG 58.841 50.000 5.72 5.72 0.00 2.85
855 865 0.321346 TGTGGCGATGCTTCAGAAGA 59.679 50.000 14.86 0.00 0.00 2.87
856 866 1.065926 TGTGGCGATGCTTCAGAAGAT 60.066 47.619 14.86 4.73 0.00 2.40
857 867 1.329906 GTGGCGATGCTTCAGAAGATG 59.670 52.381 14.86 1.11 0.00 2.90
858 868 1.207811 TGGCGATGCTTCAGAAGATGA 59.792 47.619 14.86 0.00 35.62 2.92
859 869 2.283298 GGCGATGCTTCAGAAGATGAA 58.717 47.619 14.86 0.00 45.79 2.57
860 870 2.877168 GGCGATGCTTCAGAAGATGAAT 59.123 45.455 14.86 1.44 46.71 2.57
861 871 4.060900 GGCGATGCTTCAGAAGATGAATA 58.939 43.478 14.86 0.00 46.71 1.75
862 872 4.694509 GGCGATGCTTCAGAAGATGAATAT 59.305 41.667 14.86 0.00 46.71 1.28
863 873 5.163874 GGCGATGCTTCAGAAGATGAATATC 60.164 44.000 14.86 6.23 46.71 1.63
864 874 5.407691 GCGATGCTTCAGAAGATGAATATCA 59.592 40.000 14.86 0.00 46.71 2.15
865 875 6.092396 GCGATGCTTCAGAAGATGAATATCAT 59.908 38.462 14.86 4.99 46.71 2.45
866 876 7.457060 CGATGCTTCAGAAGATGAATATCATG 58.543 38.462 14.86 0.00 46.71 3.07
867 877 6.555812 TGCTTCAGAAGATGAATATCATGC 57.444 37.500 14.86 0.00 46.71 4.06
868 878 6.059484 TGCTTCAGAAGATGAATATCATGCA 58.941 36.000 14.86 0.00 46.71 3.96
869 879 6.204882 TGCTTCAGAAGATGAATATCATGCAG 59.795 38.462 14.86 0.00 46.71 4.41
870 880 6.205076 GCTTCAGAAGATGAATATCATGCAGT 59.795 38.462 14.86 0.00 46.71 4.40
871 881 7.255173 GCTTCAGAAGATGAATATCATGCAGTT 60.255 37.037 14.86 0.00 46.71 3.16
872 882 7.492352 TCAGAAGATGAATATCATGCAGTTG 57.508 36.000 0.00 0.00 37.20 3.16
873 883 7.052248 TCAGAAGATGAATATCATGCAGTTGT 58.948 34.615 0.00 0.00 37.20 3.32
874 884 7.012044 TCAGAAGATGAATATCATGCAGTTGTG 59.988 37.037 0.00 0.00 37.20 3.33
875 885 6.262496 AGAAGATGAATATCATGCAGTTGTGG 59.738 38.462 0.00 0.00 37.20 4.17
876 886 4.277672 AGATGAATATCATGCAGTTGTGGC 59.722 41.667 0.00 0.00 37.20 5.01
877 887 3.354467 TGAATATCATGCAGTTGTGGCA 58.646 40.909 0.00 0.00 46.66 4.92
882 892 2.729455 TGCAGTTGTGGCATGCAC 59.271 55.556 21.36 15.73 44.56 4.57
883 893 1.829096 TGCAGTTGTGGCATGCACT 60.829 52.632 21.36 11.45 44.56 4.40
884 894 0.536915 TGCAGTTGTGGCATGCACTA 60.537 50.000 21.36 9.87 44.56 2.74
885 895 0.597568 GCAGTTGTGGCATGCACTAA 59.402 50.000 21.36 7.82 39.75 2.24
886 896 1.000385 GCAGTTGTGGCATGCACTAAA 60.000 47.619 21.36 5.13 39.75 1.85
887 897 2.545532 GCAGTTGTGGCATGCACTAAAA 60.546 45.455 21.36 3.65 39.75 1.52
888 898 3.311106 CAGTTGTGGCATGCACTAAAAG 58.689 45.455 21.36 0.00 0.00 2.27
889 899 2.061028 GTTGTGGCATGCACTAAAAGC 58.939 47.619 21.36 0.00 0.00 3.51
891 901 1.270274 TGTGGCATGCACTAAAAGCAG 59.730 47.619 21.36 0.00 46.36 4.24
892 902 1.541147 GTGGCATGCACTAAAAGCAGA 59.459 47.619 21.36 0.00 46.36 4.26
893 903 1.814394 TGGCATGCACTAAAAGCAGAG 59.186 47.619 21.36 0.00 46.36 3.35
894 904 1.468736 GGCATGCACTAAAAGCAGAGC 60.469 52.381 21.36 0.00 46.36 4.09
895 905 1.468736 GCATGCACTAAAAGCAGAGCC 60.469 52.381 14.21 0.00 46.36 4.70
896 906 2.089980 CATGCACTAAAAGCAGAGCCT 58.910 47.619 0.00 0.00 46.36 4.58
914 924 2.622942 GCCTTGACAACTGACAATGGAA 59.377 45.455 11.46 0.00 0.00 3.53
918 928 5.499139 TTGACAACTGACAATGGAAAGAC 57.501 39.130 0.00 0.00 0.00 3.01
919 929 3.882888 TGACAACTGACAATGGAAAGACC 59.117 43.478 0.00 0.00 39.54 3.85
920 930 2.878406 ACAACTGACAATGGAAAGACCG 59.122 45.455 0.00 0.00 42.61 4.79
922 932 3.485463 ACTGACAATGGAAAGACCGAA 57.515 42.857 0.00 0.00 42.61 4.30
1209 1232 1.185618 TCAACCTCCACCTCCAGTCG 61.186 60.000 0.00 0.00 0.00 4.18
1320 1343 3.155167 GGCTACTCCAGGTCGGGG 61.155 72.222 0.00 0.00 43.42 5.73
1360 1383 1.308326 CTCTTCCTCTCCTCCCCGT 59.692 63.158 0.00 0.00 0.00 5.28
1605 1628 2.250485 GTCTGCAACACGCTGCTG 59.750 61.111 0.00 5.94 43.07 4.41
1664 1687 1.830477 GAGAGTGTTCCAGGAGATGCT 59.170 52.381 0.00 0.00 0.00 3.79
1734 1757 4.666253 GGGCTGCACAGGGAAGCA 62.666 66.667 4.55 0.00 38.73 3.91
1891 1914 0.315869 CTCGGTGCACAACGTGTTTC 60.316 55.000 20.43 0.00 43.08 2.78
1926 1949 3.696051 TGCTGGATTTCTACTCCAAATGC 59.304 43.478 0.00 0.00 42.12 3.56
2195 2218 2.284190 CCTTTCTTCGGAGGATCTTGC 58.716 52.381 0.00 0.00 34.91 4.01
2586 2609 2.102084 TGAGATGCCTGAGAGGAATTCG 59.898 50.000 0.00 0.00 32.27 3.34
2650 2673 3.406682 GCAAAGAACGCCATCAAGG 57.593 52.632 0.00 0.00 41.84 3.61
2676 2699 6.663093 TGTTTGAAGGTATGCTTCATTATGGT 59.337 34.615 0.00 0.00 40.06 3.55
2799 2822 1.544764 ATGGCATATCCCCCTGGAAA 58.455 50.000 0.00 0.00 45.98 3.13
2873 2896 8.902806 TGATAAAGTTCAGAAAATGTTGAGTGT 58.097 29.630 0.00 0.00 0.00 3.55
2880 2903 2.995466 AAATGTTGAGTGTGATGCCG 57.005 45.000 0.00 0.00 0.00 5.69
3036 3059 3.636300 TGTCCAACATATATGCAAAGGCC 59.364 43.478 12.79 0.00 40.13 5.19
3071 3094 1.199097 CGCTGCCCGTGTTAAAAAGAT 59.801 47.619 0.00 0.00 0.00 2.40
3195 3218 6.717084 TGATATCCGAGATGAAAGAAGAGCTA 59.283 38.462 0.00 0.00 0.00 3.32
3225 3248 6.374333 GGCTGTACAAAGAGATGGATAAACAA 59.626 38.462 0.00 0.00 0.00 2.83
3369 3392 5.066593 GGGAGGCCAATTAGAGTTATGAAG 58.933 45.833 5.01 0.00 0.00 3.02
3514 3537 5.601313 TGTGGAGACTATTGGTAGGGATTAC 59.399 44.000 0.00 0.00 31.96 1.89
3766 3790 7.524698 GCTTGACACTACCCCATTTCAAATAAA 60.525 37.037 0.00 0.00 0.00 1.40
3790 3815 7.989947 ATAAGGGAACACTACTCCTCAAATA 57.010 36.000 0.00 0.00 33.11 1.40
3932 3959 7.676947 TCTGTAGCTGTAGGTGATAACTTTTT 58.323 34.615 0.00 0.00 0.00 1.94
4150 4354 8.548025 TCTTCTATTATCTTCATGTGTTTGGGA 58.452 33.333 0.00 0.00 0.00 4.37
4151 4355 8.506168 TTCTATTATCTTCATGTGTTTGGGAC 57.494 34.615 0.00 0.00 0.00 4.46
4152 4356 7.861629 TCTATTATCTTCATGTGTTTGGGACT 58.138 34.615 0.00 0.00 0.00 3.85
4153 4357 8.328758 TCTATTATCTTCATGTGTTTGGGACTT 58.671 33.333 0.00 0.00 0.00 3.01
4154 4358 7.781324 ATTATCTTCATGTGTTTGGGACTTT 57.219 32.000 0.00 0.00 0.00 2.66
4155 4359 4.916983 TCTTCATGTGTTTGGGACTTTG 57.083 40.909 0.00 0.00 0.00 2.77
4156 4360 3.636300 TCTTCATGTGTTTGGGACTTTGG 59.364 43.478 0.00 0.00 0.00 3.28
4157 4361 2.315176 TCATGTGTTTGGGACTTTGGG 58.685 47.619 0.00 0.00 0.00 4.12
4169 4373 3.073209 GGGACTTTGGGGATAGGATTCTC 59.927 52.174 0.00 0.00 0.00 2.87
4274 4480 8.392372 ACAGTTCTGTTCTTATTCCCTAAAAC 57.608 34.615 0.00 0.00 0.00 2.43
4390 4597 6.893958 TTTCAGCAGATTTCTCTATTCGTC 57.106 37.500 0.00 0.00 0.00 4.20
4394 4601 4.892934 AGCAGATTTCTCTATTCGTCCTCT 59.107 41.667 0.00 0.00 0.00 3.69
4397 4604 5.300539 CAGATTTCTCTATTCGTCCTCTGGA 59.699 44.000 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
205 209 8.816894 GGATTATGGTTCATCTATCTCTGGTTA 58.183 37.037 0.00 0.00 0.00 2.85
382 392 1.003812 GGTGGTACTGGTTGGCATACA 59.996 52.381 0.00 0.00 0.00 2.29
387 397 1.375523 CTCGGTGGTACTGGTTGGC 60.376 63.158 0.00 0.00 0.00 4.52
436 446 3.748048 GCACTCTTGAGCATGAAACTACA 59.252 43.478 0.00 0.00 0.00 2.74
439 449 2.854963 TGCACTCTTGAGCATGAAACT 58.145 42.857 0.00 0.00 34.99 2.66
440 450 3.631145 TTGCACTCTTGAGCATGAAAC 57.369 42.857 0.00 0.00 39.36 2.78
446 456 1.405105 GGTTGTTTGCACTCTTGAGCA 59.595 47.619 0.00 0.00 37.97 4.26
477 487 1.474330 AAATTCCATGAGTTCGCCCC 58.526 50.000 0.00 0.00 0.00 5.80
479 489 2.667969 GCAAAAATTCCATGAGTTCGCC 59.332 45.455 0.00 0.00 0.00 5.54
480 490 2.667969 GGCAAAAATTCCATGAGTTCGC 59.332 45.455 0.00 0.00 0.00 4.70
515 525 3.514645 CTGCAAACATATGCCTTTCCAC 58.485 45.455 1.58 0.00 45.83 4.02
549 559 2.224079 CGACGCCTTGGATTTCCATATG 59.776 50.000 0.00 0.00 46.97 1.78
555 565 0.108329 TCTCCGACGCCTTGGATTTC 60.108 55.000 0.00 0.00 32.83 2.17
561 571 1.438651 TGATTTTCTCCGACGCCTTG 58.561 50.000 0.00 0.00 0.00 3.61
562 572 2.403252 ATGATTTTCTCCGACGCCTT 57.597 45.000 0.00 0.00 0.00 4.35
563 573 3.536956 TTATGATTTTCTCCGACGCCT 57.463 42.857 0.00 0.00 0.00 5.52
564 574 4.813296 AATTATGATTTTCTCCGACGCC 57.187 40.909 0.00 0.00 0.00 5.68
565 575 5.455525 CCAAAATTATGATTTTCTCCGACGC 59.544 40.000 5.28 0.00 42.14 5.19
566 576 5.971202 CCCAAAATTATGATTTTCTCCGACG 59.029 40.000 5.28 0.00 42.14 5.12
567 577 7.095695 TCCCAAAATTATGATTTTCTCCGAC 57.904 36.000 5.28 0.00 42.14 4.79
568 578 7.896383 ATCCCAAAATTATGATTTTCTCCGA 57.104 32.000 5.28 0.68 42.14 4.55
569 579 7.439056 CCAATCCCAAAATTATGATTTTCTCCG 59.561 37.037 5.28 0.00 42.14 4.63
570 580 8.485392 TCCAATCCCAAAATTATGATTTTCTCC 58.515 33.333 5.28 0.00 42.14 3.71
572 582 9.841295 CATCCAATCCCAAAATTATGATTTTCT 57.159 29.630 5.28 0.00 42.14 2.52
573 583 9.059260 CCATCCAATCCCAAAATTATGATTTTC 57.941 33.333 5.28 0.00 42.14 2.29
574 584 8.559175 ACCATCCAATCCCAAAATTATGATTTT 58.441 29.630 2.50 2.50 44.24 1.82
575 585 8.104838 ACCATCCAATCCCAAAATTATGATTT 57.895 30.769 0.00 0.00 37.06 2.17
576 586 7.695074 ACCATCCAATCCCAAAATTATGATT 57.305 32.000 0.00 0.00 0.00 2.57
577 587 7.038799 GCTACCATCCAATCCCAAAATTATGAT 60.039 37.037 0.00 0.00 0.00 2.45
578 588 6.267471 GCTACCATCCAATCCCAAAATTATGA 59.733 38.462 0.00 0.00 0.00 2.15
579 589 6.041865 TGCTACCATCCAATCCCAAAATTATG 59.958 38.462 0.00 0.00 0.00 1.90
580 590 6.142498 TGCTACCATCCAATCCCAAAATTAT 58.858 36.000 0.00 0.00 0.00 1.28
581 591 5.523588 TGCTACCATCCAATCCCAAAATTA 58.476 37.500 0.00 0.00 0.00 1.40
582 592 4.360889 TGCTACCATCCAATCCCAAAATT 58.639 39.130 0.00 0.00 0.00 1.82
583 593 3.992999 TGCTACCATCCAATCCCAAAAT 58.007 40.909 0.00 0.00 0.00 1.82
584 594 3.464720 TGCTACCATCCAATCCCAAAA 57.535 42.857 0.00 0.00 0.00 2.44
585 595 3.096092 GTTGCTACCATCCAATCCCAAA 58.904 45.455 0.00 0.00 0.00 3.28
586 596 2.311542 AGTTGCTACCATCCAATCCCAA 59.688 45.455 0.00 0.00 0.00 4.12
587 597 1.922447 AGTTGCTACCATCCAATCCCA 59.078 47.619 0.00 0.00 0.00 4.37
588 598 2.736670 AGTTGCTACCATCCAATCCC 57.263 50.000 0.00 0.00 0.00 3.85
589 599 4.381411 GAGTAGTTGCTACCATCCAATCC 58.619 47.826 3.01 0.00 37.65 3.01
590 600 4.381411 GGAGTAGTTGCTACCATCCAATC 58.619 47.826 8.48 0.00 37.65 2.67
591 601 3.136626 GGGAGTAGTTGCTACCATCCAAT 59.863 47.826 13.31 0.00 39.32 3.16
592 602 2.504175 GGGAGTAGTTGCTACCATCCAA 59.496 50.000 13.31 0.00 39.32 3.53
593 603 2.116238 GGGAGTAGTTGCTACCATCCA 58.884 52.381 13.31 0.00 39.32 3.41
594 604 2.365941 GAGGGAGTAGTTGCTACCATCC 59.634 54.545 1.16 0.37 42.02 3.51
595 605 2.365941 GGAGGGAGTAGTTGCTACCATC 59.634 54.545 1.16 0.00 42.02 3.51
596 606 2.399580 GGAGGGAGTAGTTGCTACCAT 58.600 52.381 1.16 0.00 42.02 3.55
597 607 1.861982 GGAGGGAGTAGTTGCTACCA 58.138 55.000 1.16 0.00 42.02 3.25
598 608 0.745468 CGGAGGGAGTAGTTGCTACC 59.255 60.000 3.01 0.00 39.83 3.18
599 609 1.472188 ACGGAGGGAGTAGTTGCTAC 58.528 55.000 0.00 0.00 37.23 3.58
600 610 2.097825 GAACGGAGGGAGTAGTTGCTA 58.902 52.381 0.00 0.00 0.00 3.49
601 611 0.896226 GAACGGAGGGAGTAGTTGCT 59.104 55.000 0.00 0.00 0.00 3.91
602 612 0.108281 GGAACGGAGGGAGTAGTTGC 60.108 60.000 0.00 0.00 0.00 4.17
603 613 1.558233 AGGAACGGAGGGAGTAGTTG 58.442 55.000 0.00 0.00 0.00 3.16
604 614 3.463048 TTAGGAACGGAGGGAGTAGTT 57.537 47.619 0.00 0.00 0.00 2.24
605 615 3.463048 TTTAGGAACGGAGGGAGTAGT 57.537 47.619 0.00 0.00 0.00 2.73
606 616 5.139001 AGTATTTAGGAACGGAGGGAGTAG 58.861 45.833 0.00 0.00 0.00 2.57
607 617 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
608 618 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
609 619 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
610 620 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
611 621 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
612 622 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
613 623 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
614 624 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
615 625 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
616 626 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
617 627 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
618 628 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
619 629 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
620 630 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
622 632 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
623 633 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
624 634 8.635765 TTGAAATGCCTAGAAAGACAAGTATT 57.364 30.769 0.00 0.00 0.00 1.89
625 635 8.635765 TTTGAAATGCCTAGAAAGACAAGTAT 57.364 30.769 0.00 0.00 0.00 2.12
626 636 8.514594 CATTTGAAATGCCTAGAAAGACAAGTA 58.485 33.333 4.82 0.00 0.00 2.24
627 637 6.959639 TTTGAAATGCCTAGAAAGACAAGT 57.040 33.333 0.00 0.00 0.00 3.16
628 638 7.540055 GTCATTTGAAATGCCTAGAAAGACAAG 59.460 37.037 12.86 0.00 0.00 3.16
629 639 7.231317 AGTCATTTGAAATGCCTAGAAAGACAA 59.769 33.333 12.86 0.00 0.00 3.18
630 640 6.716628 AGTCATTTGAAATGCCTAGAAAGACA 59.283 34.615 12.86 0.00 0.00 3.41
631 641 7.150783 AGTCATTTGAAATGCCTAGAAAGAC 57.849 36.000 12.86 3.23 0.00 3.01
632 642 9.113838 GATAGTCATTTGAAATGCCTAGAAAGA 57.886 33.333 13.20 0.00 0.00 2.52
633 643 8.896744 TGATAGTCATTTGAAATGCCTAGAAAG 58.103 33.333 13.20 0.00 0.00 2.62
634 644 8.677300 GTGATAGTCATTTGAAATGCCTAGAAA 58.323 33.333 13.20 0.91 0.00 2.52
635 645 7.828717 TGTGATAGTCATTTGAAATGCCTAGAA 59.171 33.333 13.20 2.99 0.00 2.10
636 646 7.337938 TGTGATAGTCATTTGAAATGCCTAGA 58.662 34.615 13.20 1.78 0.00 2.43
637 647 7.558161 TGTGATAGTCATTTGAAATGCCTAG 57.442 36.000 13.20 0.00 0.00 3.02
638 648 9.056005 GTATGTGATAGTCATTTGAAATGCCTA 57.944 33.333 10.59 10.59 0.00 3.93
639 649 7.254898 CGTATGTGATAGTCATTTGAAATGCCT 60.255 37.037 12.86 9.73 0.00 4.75
640 650 6.852853 CGTATGTGATAGTCATTTGAAATGCC 59.147 38.462 12.86 1.61 0.00 4.40
641 651 6.852853 CCGTATGTGATAGTCATTTGAAATGC 59.147 38.462 12.86 8.33 0.00 3.56
642 652 8.141835 TCCGTATGTGATAGTCATTTGAAATG 57.858 34.615 11.54 11.54 0.00 2.32
643 653 8.777413 CATCCGTATGTGATAGTCATTTGAAAT 58.223 33.333 0.00 0.00 0.00 2.17
644 654 7.768582 ACATCCGTATGTGATAGTCATTTGAAA 59.231 33.333 0.00 0.00 44.79 2.69
645 655 7.272244 ACATCCGTATGTGATAGTCATTTGAA 58.728 34.615 0.00 0.00 44.79 2.69
646 656 6.816136 ACATCCGTATGTGATAGTCATTTGA 58.184 36.000 0.00 0.00 44.79 2.69
647 657 8.650714 CATACATCCGTATGTGATAGTCATTTG 58.349 37.037 3.56 0.00 46.70 2.32
648 658 8.763049 CATACATCCGTATGTGATAGTCATTT 57.237 34.615 3.56 0.00 46.70 2.32
689 699 6.812160 ACGGAGTAAAATGAGTGAATCTACAC 59.188 38.462 0.00 0.00 41.94 2.90
690 700 6.931838 ACGGAGTAAAATGAGTGAATCTACA 58.068 36.000 0.00 0.00 41.94 2.74
706 716 7.255555 TTCAACAAGTGACTACATACGGAGTAA 60.256 37.037 0.00 0.00 41.03 2.24
707 717 6.207221 TTCAACAAGTGACTACATACGGAGTA 59.793 38.462 0.00 0.00 41.66 2.59
708 718 5.010314 TTCAACAAGTGACTACATACGGAGT 59.990 40.000 0.00 0.00 39.84 3.85
709 719 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
710 720 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
711 721 6.534059 CATTTCAACAAGTGACTACATACGG 58.466 40.000 0.00 0.00 35.39 4.02
712 722 6.015504 GCATTTCAACAAGTGACTACATACG 58.984 40.000 0.00 0.00 35.39 3.06
713 723 6.149474 AGGCATTTCAACAAGTGACTACATAC 59.851 38.462 0.00 0.00 35.84 2.39
714 724 6.237901 AGGCATTTCAACAAGTGACTACATA 58.762 36.000 0.00 0.00 35.84 2.29
715 725 5.072741 AGGCATTTCAACAAGTGACTACAT 58.927 37.500 0.00 0.00 35.84 2.29
716 726 4.460263 AGGCATTTCAACAAGTGACTACA 58.540 39.130 0.00 0.00 35.84 2.74
717 727 6.554334 TTAGGCATTTCAACAAGTGACTAC 57.446 37.500 0.00 0.00 39.07 2.73
718 728 7.575414 TTTTAGGCATTTCAACAAGTGACTA 57.425 32.000 0.00 0.00 38.51 2.59
719 729 6.463995 TTTTAGGCATTTCAACAAGTGACT 57.536 33.333 0.00 0.00 40.60 3.41
720 730 6.978080 TCTTTTTAGGCATTTCAACAAGTGAC 59.022 34.615 0.00 0.00 35.39 3.67
721 731 6.978080 GTCTTTTTAGGCATTTCAACAAGTGA 59.022 34.615 0.00 0.00 0.00 3.41
722 732 6.756074 TGTCTTTTTAGGCATTTCAACAAGTG 59.244 34.615 0.00 0.00 0.00 3.16
723 733 6.872920 TGTCTTTTTAGGCATTTCAACAAGT 58.127 32.000 0.00 0.00 0.00 3.16
724 734 7.492344 ACTTGTCTTTTTAGGCATTTCAACAAG 59.508 33.333 0.00 0.00 43.26 3.16
725 735 7.327214 ACTTGTCTTTTTAGGCATTTCAACAA 58.673 30.769 0.00 0.00 0.00 2.83
726 736 6.872920 ACTTGTCTTTTTAGGCATTTCAACA 58.127 32.000 0.00 0.00 0.00 3.33
727 737 9.476202 AATACTTGTCTTTTTAGGCATTTCAAC 57.524 29.630 0.00 0.00 0.00 3.18
732 742 9.528489 TCCTAAATACTTGTCTTTTTAGGCATT 57.472 29.630 13.09 0.00 45.31 3.56
733 743 9.528489 TTCCTAAATACTTGTCTTTTTAGGCAT 57.472 29.630 13.09 0.00 45.31 4.40
734 744 8.789762 GTTCCTAAATACTTGTCTTTTTAGGCA 58.210 33.333 13.09 2.93 45.31 4.75
735 745 7.961283 CGTTCCTAAATACTTGTCTTTTTAGGC 59.039 37.037 13.09 3.06 45.31 3.93
736 746 8.448615 CCGTTCCTAAATACTTGTCTTTTTAGG 58.551 37.037 12.11 12.11 46.30 2.69
737 747 9.211485 TCCGTTCCTAAATACTTGTCTTTTTAG 57.789 33.333 0.00 0.00 33.47 1.85
738 748 9.211485 CTCCGTTCCTAAATACTTGTCTTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
739 749 7.174426 CCTCCGTTCCTAAATACTTGTCTTTTT 59.826 37.037 0.00 0.00 0.00 1.94
740 750 6.653740 CCTCCGTTCCTAAATACTTGTCTTTT 59.346 38.462 0.00 0.00 0.00 2.27
741 751 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
742 752 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
743 753 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
744 754 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
745 755 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
746 756 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
747 757 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
748 758 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
749 759 5.859205 TTACTCCCTCCGTTCCTAAATAC 57.141 43.478 0.00 0.00 0.00 1.89
750 760 7.300658 AGTATTACTCCCTCCGTTCCTAAATA 58.699 38.462 0.00 0.00 0.00 1.40
751 761 6.141790 AGTATTACTCCCTCCGTTCCTAAAT 58.858 40.000 0.00 0.00 0.00 1.40
752 762 5.522641 AGTATTACTCCCTCCGTTCCTAAA 58.477 41.667 0.00 0.00 0.00 1.85
753 763 5.134725 AGTATTACTCCCTCCGTTCCTAA 57.865 43.478 0.00 0.00 0.00 2.69
754 764 4.803329 AGTATTACTCCCTCCGTTCCTA 57.197 45.455 0.00 0.00 0.00 2.94
755 765 3.684408 AGTATTACTCCCTCCGTTCCT 57.316 47.619 0.00 0.00 0.00 3.36
756 766 4.750021 AAAGTATTACTCCCTCCGTTCC 57.250 45.455 0.00 0.00 0.00 3.62
757 767 5.068855 AGCTAAAGTATTACTCCCTCCGTTC 59.931 44.000 0.00 0.00 0.00 3.95
758 768 4.961099 AGCTAAAGTATTACTCCCTCCGTT 59.039 41.667 0.00 0.00 0.00 4.44
759 769 4.544683 AGCTAAAGTATTACTCCCTCCGT 58.455 43.478 0.00 0.00 0.00 4.69
760 770 5.048154 GGTAGCTAAAGTATTACTCCCTCCG 60.048 48.000 0.00 0.00 0.00 4.63
761 771 5.837438 TGGTAGCTAAAGTATTACTCCCTCC 59.163 44.000 0.00 0.00 0.00 4.30
762 772 6.973460 TGGTAGCTAAAGTATTACTCCCTC 57.027 41.667 0.00 0.00 0.00 4.30
763 773 7.181485 TGTTTGGTAGCTAAAGTATTACTCCCT 59.819 37.037 0.00 0.00 0.00 4.20
764 774 7.279536 GTGTTTGGTAGCTAAAGTATTACTCCC 59.720 40.741 0.00 0.00 0.00 4.30
765 775 7.820872 TGTGTTTGGTAGCTAAAGTATTACTCC 59.179 37.037 0.00 0.00 0.00 3.85
766 776 8.767478 TGTGTTTGGTAGCTAAAGTATTACTC 57.233 34.615 0.00 0.00 0.00 2.59
767 777 9.734984 ATTGTGTTTGGTAGCTAAAGTATTACT 57.265 29.630 0.00 0.00 0.00 2.24
772 782 8.785946 GGTTTATTGTGTTTGGTAGCTAAAGTA 58.214 33.333 0.00 0.00 0.00 2.24
773 783 7.520937 CGGTTTATTGTGTTTGGTAGCTAAAGT 60.521 37.037 0.00 0.00 0.00 2.66
774 784 6.799925 CGGTTTATTGTGTTTGGTAGCTAAAG 59.200 38.462 0.00 0.00 0.00 1.85
775 785 6.485984 TCGGTTTATTGTGTTTGGTAGCTAAA 59.514 34.615 0.00 0.00 0.00 1.85
776 786 5.996513 TCGGTTTATTGTGTTTGGTAGCTAA 59.003 36.000 0.00 0.00 0.00 3.09
777 787 5.549347 TCGGTTTATTGTGTTTGGTAGCTA 58.451 37.500 0.00 0.00 0.00 3.32
778 788 4.391155 TCGGTTTATTGTGTTTGGTAGCT 58.609 39.130 0.00 0.00 0.00 3.32
779 789 4.752661 TCGGTTTATTGTGTTTGGTAGC 57.247 40.909 0.00 0.00 0.00 3.58
780 790 6.425721 TCTCTTCGGTTTATTGTGTTTGGTAG 59.574 38.462 0.00 0.00 0.00 3.18
781 791 6.289834 TCTCTTCGGTTTATTGTGTTTGGTA 58.710 36.000 0.00 0.00 0.00 3.25
782 792 5.127491 TCTCTTCGGTTTATTGTGTTTGGT 58.873 37.500 0.00 0.00 0.00 3.67
783 793 5.682943 TCTCTTCGGTTTATTGTGTTTGG 57.317 39.130 0.00 0.00 0.00 3.28
784 794 6.491394 TGTTCTCTTCGGTTTATTGTGTTTG 58.509 36.000 0.00 0.00 0.00 2.93
785 795 6.687081 TGTTCTCTTCGGTTTATTGTGTTT 57.313 33.333 0.00 0.00 0.00 2.83
786 796 6.877611 ATGTTCTCTTCGGTTTATTGTGTT 57.122 33.333 0.00 0.00 0.00 3.32
787 797 6.877611 AATGTTCTCTTCGGTTTATTGTGT 57.122 33.333 0.00 0.00 0.00 3.72
788 798 8.251750 TCTAATGTTCTCTTCGGTTTATTGTG 57.748 34.615 0.00 0.00 0.00 3.33
789 799 8.718734 GTTCTAATGTTCTCTTCGGTTTATTGT 58.281 33.333 0.00 0.00 0.00 2.71
790 800 8.936864 AGTTCTAATGTTCTCTTCGGTTTATTG 58.063 33.333 0.00 0.00 0.00 1.90
791 801 9.503399 AAGTTCTAATGTTCTCTTCGGTTTATT 57.497 29.630 0.00 0.00 0.00 1.40
792 802 8.936864 CAAGTTCTAATGTTCTCTTCGGTTTAT 58.063 33.333 0.00 0.00 0.00 1.40
793 803 7.095355 GCAAGTTCTAATGTTCTCTTCGGTTTA 60.095 37.037 0.00 0.00 0.00 2.01
794 804 6.293462 GCAAGTTCTAATGTTCTCTTCGGTTT 60.293 38.462 0.00 0.00 0.00 3.27
795 805 5.179555 GCAAGTTCTAATGTTCTCTTCGGTT 59.820 40.000 0.00 0.00 0.00 4.44
796 806 4.691216 GCAAGTTCTAATGTTCTCTTCGGT 59.309 41.667 0.00 0.00 0.00 4.69
797 807 4.932200 AGCAAGTTCTAATGTTCTCTTCGG 59.068 41.667 0.00 0.00 0.00 4.30
798 808 5.635280 TCAGCAAGTTCTAATGTTCTCTTCG 59.365 40.000 0.00 0.00 0.00 3.79
799 809 7.118971 ACATCAGCAAGTTCTAATGTTCTCTTC 59.881 37.037 0.00 0.00 0.00 2.87
800 810 6.939163 ACATCAGCAAGTTCTAATGTTCTCTT 59.061 34.615 0.00 0.00 0.00 2.85
801 811 6.471146 ACATCAGCAAGTTCTAATGTTCTCT 58.529 36.000 0.00 0.00 0.00 3.10
802 812 6.734104 ACATCAGCAAGTTCTAATGTTCTC 57.266 37.500 0.00 0.00 0.00 2.87
803 813 7.365741 CAAACATCAGCAAGTTCTAATGTTCT 58.634 34.615 0.00 0.00 36.59 3.01
804 814 6.583806 CCAAACATCAGCAAGTTCTAATGTTC 59.416 38.462 0.00 0.00 36.59 3.18
805 815 6.265196 TCCAAACATCAGCAAGTTCTAATGTT 59.735 34.615 0.00 0.00 38.57 2.71
806 816 5.769662 TCCAAACATCAGCAAGTTCTAATGT 59.230 36.000 0.00 0.00 0.00 2.71
807 817 6.072286 AGTCCAAACATCAGCAAGTTCTAATG 60.072 38.462 0.00 0.00 0.00 1.90
808 818 6.006449 AGTCCAAACATCAGCAAGTTCTAAT 58.994 36.000 0.00 0.00 0.00 1.73
809 819 5.376625 AGTCCAAACATCAGCAAGTTCTAA 58.623 37.500 0.00 0.00 0.00 2.10
810 820 4.973168 AGTCCAAACATCAGCAAGTTCTA 58.027 39.130 0.00 0.00 0.00 2.10
811 821 3.825328 AGTCCAAACATCAGCAAGTTCT 58.175 40.909 0.00 0.00 0.00 3.01
812 822 5.886960 ATAGTCCAAACATCAGCAAGTTC 57.113 39.130 0.00 0.00 0.00 3.01
813 823 6.040842 ACAAATAGTCCAAACATCAGCAAGTT 59.959 34.615 0.00 0.00 0.00 2.66
814 824 5.536161 ACAAATAGTCCAAACATCAGCAAGT 59.464 36.000 0.00 0.00 0.00 3.16
815 825 5.860182 CACAAATAGTCCAAACATCAGCAAG 59.140 40.000 0.00 0.00 0.00 4.01
816 826 5.278907 CCACAAATAGTCCAAACATCAGCAA 60.279 40.000 0.00 0.00 0.00 3.91
817 827 4.218200 CCACAAATAGTCCAAACATCAGCA 59.782 41.667 0.00 0.00 0.00 4.41
818 828 4.737054 CCACAAATAGTCCAAACATCAGC 58.263 43.478 0.00 0.00 0.00 4.26
819 829 4.672542 CGCCACAAATAGTCCAAACATCAG 60.673 45.833 0.00 0.00 0.00 2.90
820 830 3.190327 CGCCACAAATAGTCCAAACATCA 59.810 43.478 0.00 0.00 0.00 3.07
821 831 3.438781 TCGCCACAAATAGTCCAAACATC 59.561 43.478 0.00 0.00 0.00 3.06
822 832 3.417101 TCGCCACAAATAGTCCAAACAT 58.583 40.909 0.00 0.00 0.00 2.71
823 833 2.852449 TCGCCACAAATAGTCCAAACA 58.148 42.857 0.00 0.00 0.00 2.83
824 834 3.758300 CATCGCCACAAATAGTCCAAAC 58.242 45.455 0.00 0.00 0.00 2.93
825 835 2.163412 GCATCGCCACAAATAGTCCAAA 59.837 45.455 0.00 0.00 0.00 3.28
826 836 1.742831 GCATCGCCACAAATAGTCCAA 59.257 47.619 0.00 0.00 0.00 3.53
827 837 1.065491 AGCATCGCCACAAATAGTCCA 60.065 47.619 0.00 0.00 0.00 4.02
828 838 1.668419 AGCATCGCCACAAATAGTCC 58.332 50.000 0.00 0.00 0.00 3.85
829 839 2.677836 TGAAGCATCGCCACAAATAGTC 59.322 45.455 0.00 0.00 0.00 2.59
830 840 2.679837 CTGAAGCATCGCCACAAATAGT 59.320 45.455 0.00 0.00 0.00 2.12
831 841 2.938451 TCTGAAGCATCGCCACAAATAG 59.062 45.455 0.00 0.00 0.00 1.73
832 842 2.984562 TCTGAAGCATCGCCACAAATA 58.015 42.857 0.00 0.00 0.00 1.40
833 843 1.825090 TCTGAAGCATCGCCACAAAT 58.175 45.000 0.00 0.00 0.00 2.32
834 844 1.536766 CTTCTGAAGCATCGCCACAAA 59.463 47.619 4.20 0.00 0.00 2.83
835 845 1.159285 CTTCTGAAGCATCGCCACAA 58.841 50.000 4.20 0.00 0.00 3.33
836 846 0.321346 TCTTCTGAAGCATCGCCACA 59.679 50.000 12.54 0.00 0.00 4.17
837 847 1.329906 CATCTTCTGAAGCATCGCCAC 59.670 52.381 12.54 0.00 0.00 5.01
838 848 1.207811 TCATCTTCTGAAGCATCGCCA 59.792 47.619 12.54 0.00 0.00 5.69
839 849 1.945387 TCATCTTCTGAAGCATCGCC 58.055 50.000 12.54 0.00 0.00 5.54
840 850 5.407691 TGATATTCATCTTCTGAAGCATCGC 59.592 40.000 12.54 0.00 46.71 4.58
841 851 7.457060 CATGATATTCATCTTCTGAAGCATCG 58.543 38.462 12.54 1.43 46.71 3.84
842 852 7.094762 TGCATGATATTCATCTTCTGAAGCATC 60.095 37.037 12.54 8.20 46.71 3.91
843 853 6.715264 TGCATGATATTCATCTTCTGAAGCAT 59.285 34.615 12.54 5.05 46.71 3.79
844 854 6.059484 TGCATGATATTCATCTTCTGAAGCA 58.941 36.000 12.54 2.91 46.71 3.91
845 855 6.205076 ACTGCATGATATTCATCTTCTGAAGC 59.795 38.462 12.54 0.00 46.71 3.86
846 856 7.731882 ACTGCATGATATTCATCTTCTGAAG 57.268 36.000 11.18 11.18 46.71 3.02
848 858 7.012044 CACAACTGCATGATATTCATCTTCTGA 59.988 37.037 0.00 0.00 34.28 3.27
849 859 7.132863 CACAACTGCATGATATTCATCTTCTG 58.867 38.462 0.00 0.00 34.28 3.02
850 860 6.262496 CCACAACTGCATGATATTCATCTTCT 59.738 38.462 0.00 0.00 34.28 2.85
851 861 6.436261 CCACAACTGCATGATATTCATCTTC 58.564 40.000 0.00 0.00 34.28 2.87
852 862 5.221185 GCCACAACTGCATGATATTCATCTT 60.221 40.000 0.00 0.00 34.28 2.40
853 863 4.277672 GCCACAACTGCATGATATTCATCT 59.722 41.667 0.00 0.00 34.28 2.90
854 864 4.037089 TGCCACAACTGCATGATATTCATC 59.963 41.667 0.00 0.00 34.28 2.92
855 865 3.955551 TGCCACAACTGCATGATATTCAT 59.044 39.130 0.00 0.00 37.65 2.57
856 866 3.354467 TGCCACAACTGCATGATATTCA 58.646 40.909 0.00 0.00 32.85 2.57
865 875 2.729455 GTGCATGCCACAACTGCA 59.271 55.556 16.68 0.00 44.06 4.41
872 882 1.541147 TCTGCTTTTAGTGCATGCCAC 59.459 47.619 16.68 13.29 45.01 5.01
873 883 1.814394 CTCTGCTTTTAGTGCATGCCA 59.186 47.619 16.68 1.78 39.86 4.92
874 884 1.468736 GCTCTGCTTTTAGTGCATGCC 60.469 52.381 16.68 6.65 39.86 4.40
875 885 1.468736 GGCTCTGCTTTTAGTGCATGC 60.469 52.381 11.82 11.82 39.86 4.06
876 886 2.089980 AGGCTCTGCTTTTAGTGCATG 58.910 47.619 0.00 0.00 39.86 4.06
877 887 2.490903 CAAGGCTCTGCTTTTAGTGCAT 59.509 45.455 0.00 0.00 39.86 3.96
878 888 1.881973 CAAGGCTCTGCTTTTAGTGCA 59.118 47.619 0.00 0.00 38.55 4.57
879 889 2.095516 GTCAAGGCTCTGCTTTTAGTGC 60.096 50.000 0.00 0.00 36.67 4.40
880 890 3.141398 TGTCAAGGCTCTGCTTTTAGTG 58.859 45.455 0.00 0.00 0.00 2.74
881 891 3.492102 TGTCAAGGCTCTGCTTTTAGT 57.508 42.857 0.00 0.00 0.00 2.24
882 892 3.817647 AGTTGTCAAGGCTCTGCTTTTAG 59.182 43.478 0.00 0.00 0.00 1.85
883 893 3.565482 CAGTTGTCAAGGCTCTGCTTTTA 59.435 43.478 0.00 0.00 0.00 1.52
884 894 2.360165 CAGTTGTCAAGGCTCTGCTTTT 59.640 45.455 0.00 0.00 0.00 2.27
885 895 1.952296 CAGTTGTCAAGGCTCTGCTTT 59.048 47.619 0.00 0.00 0.00 3.51
886 896 1.141657 TCAGTTGTCAAGGCTCTGCTT 59.858 47.619 0.00 0.00 0.00 3.91
887 897 0.761187 TCAGTTGTCAAGGCTCTGCT 59.239 50.000 0.00 0.00 0.00 4.24
888 898 0.871057 GTCAGTTGTCAAGGCTCTGC 59.129 55.000 0.00 0.00 0.00 4.26
889 899 2.245159 TGTCAGTTGTCAAGGCTCTG 57.755 50.000 0.00 0.00 0.00 3.35
890 900 3.144506 CATTGTCAGTTGTCAAGGCTCT 58.855 45.455 0.00 0.00 0.00 4.09
891 901 2.227388 CCATTGTCAGTTGTCAAGGCTC 59.773 50.000 0.00 0.00 0.00 4.70
892 902 2.158623 TCCATTGTCAGTTGTCAAGGCT 60.159 45.455 0.00 0.00 0.00 4.58
893 903 2.229792 TCCATTGTCAGTTGTCAAGGC 58.770 47.619 0.00 0.00 0.00 4.35
894 904 4.580167 TCTTTCCATTGTCAGTTGTCAAGG 59.420 41.667 0.00 0.00 0.00 3.61
895 905 5.506317 GGTCTTTCCATTGTCAGTTGTCAAG 60.506 44.000 0.00 0.00 35.97 3.02
896 906 4.338118 GGTCTTTCCATTGTCAGTTGTCAA 59.662 41.667 0.00 0.00 35.97 3.18
914 924 2.168728 GGTAGATGCCTCTTTCGGTCTT 59.831 50.000 0.00 0.00 32.66 3.01
918 928 0.249489 CCGGTAGATGCCTCTTTCGG 60.249 60.000 14.51 14.51 38.54 4.30
919 929 0.249489 CCCGGTAGATGCCTCTTTCG 60.249 60.000 0.00 2.19 32.66 3.46
920 930 0.106894 CCCCGGTAGATGCCTCTTTC 59.893 60.000 0.00 0.00 32.66 2.62
922 932 2.444256 GCCCCGGTAGATGCCTCTT 61.444 63.158 0.00 0.00 32.66 2.85
1043 1066 1.153449 CTGAACGGGAGGCGCATTA 60.153 57.895 10.83 0.00 0.00 1.90
1332 1355 3.596066 GAGGAAGAGCTGGTGCGCA 62.596 63.158 5.66 5.66 45.42 6.09
1638 1661 0.742281 CCTGGAACACTCTCATGCCG 60.742 60.000 0.00 0.00 0.00 5.69
1734 1757 4.563580 CGCATATCAGTAAATAGGCCCAGT 60.564 45.833 0.00 0.00 35.94 4.00
1877 1900 2.351455 TCTTGAGAAACACGTTGTGCA 58.649 42.857 0.00 0.00 36.98 4.57
1891 1914 2.154854 TCCAGCAACGAGTTCTTGAG 57.845 50.000 0.00 0.00 0.00 3.02
1926 1949 1.088340 CCATCTCAGCAAGGCAGTCG 61.088 60.000 0.00 0.00 0.00 4.18
2586 2609 5.294306 TGAAATAACAGCATTCCACGAGATC 59.706 40.000 0.00 0.00 0.00 2.75
2676 2699 4.792068 AGGTGACTGAATCTGGTTTGAAA 58.208 39.130 0.00 0.00 41.13 2.69
2773 2796 4.467769 CAGGGGGATATGCCATATTCATC 58.532 47.826 15.93 0.00 38.95 2.92
2871 2894 2.483877 GTCATCTTCAAACGGCATCACA 59.516 45.455 0.00 0.00 0.00 3.58
2873 2896 2.083774 GGTCATCTTCAAACGGCATCA 58.916 47.619 0.00 0.00 0.00 3.07
2880 2903 6.956299 CAAATGATTGGGTCATCTTCAAAC 57.044 37.500 0.00 0.00 46.80 2.93
3036 3059 1.006832 CAGCGTCTTCCCATTTACCG 58.993 55.000 0.00 0.00 0.00 4.02
3071 3094 8.609617 TTTCCTAAGTCCTCTATTTCTCATGA 57.390 34.615 0.00 0.00 0.00 3.07
3195 3218 3.450457 CCATCTCTTTGTACAGCCTCTCT 59.550 47.826 0.00 0.00 0.00 3.10
3225 3248 2.826725 GCTAGTGTCGGGCTTATATCCT 59.173 50.000 0.00 0.00 0.00 3.24
3350 3373 9.732130 ATAGATTCTTCATAACTCTAATTGGCC 57.268 33.333 0.00 0.00 0.00 5.36
3369 3392 5.229423 CAGTCTAGGCAAGCAGATAGATTC 58.771 45.833 0.00 0.00 0.00 2.52
3378 3401 3.482383 TGGCAGTCTAGGCAAGCA 58.518 55.556 12.86 0.00 41.47 3.91
3514 3537 2.727798 CCTTCATTTGCACAAGAAAGCG 59.272 45.455 0.00 0.00 0.00 4.68
3766 3790 6.893020 ATTTGAGGAGTAGTGTTCCCTTAT 57.107 37.500 0.00 0.00 35.20 1.73
3819 3844 6.650390 ACAAAGAACTGAAACAAAAACATGCT 59.350 30.769 0.00 0.00 0.00 3.79
3850 3876 0.810648 GCACGAAGGCAATGGATTCA 59.189 50.000 0.00 0.00 0.00 2.57
3851 3877 0.810648 TGCACGAAGGCAATGGATTC 59.189 50.000 0.00 0.00 41.65 2.52
3986 4014 3.969117 TCGCAATGATTTGTATCTGGC 57.031 42.857 0.00 0.00 35.17 4.85
4150 4354 5.760131 CTTTGAGAATCCTATCCCCAAAGT 58.240 41.667 0.00 0.00 36.63 2.66
4151 4355 4.582240 GCTTTGAGAATCCTATCCCCAAAG 59.418 45.833 0.00 0.00 40.12 2.77
4152 4356 4.230502 AGCTTTGAGAATCCTATCCCCAAA 59.769 41.667 0.00 0.00 0.00 3.28
4153 4357 3.788142 AGCTTTGAGAATCCTATCCCCAA 59.212 43.478 0.00 0.00 0.00 4.12
4154 4358 3.397527 AGCTTTGAGAATCCTATCCCCA 58.602 45.455 0.00 0.00 0.00 4.96
4155 4359 4.445557 AAGCTTTGAGAATCCTATCCCC 57.554 45.455 0.00 0.00 0.00 4.81
4156 4360 9.574516 TTTTATAAGCTTTGAGAATCCTATCCC 57.425 33.333 3.20 0.00 0.00 3.85
4274 4480 6.421377 TCATTTATGACACTTGGATCAACG 57.579 37.500 0.00 0.00 0.00 4.10
4301 4507 5.627499 TGCCATTAAAAGCTAAGTGTCTG 57.373 39.130 0.00 0.00 0.00 3.51
4305 4511 5.953183 TGACATGCCATTAAAAGCTAAGTG 58.047 37.500 0.00 0.00 0.00 3.16
4390 4597 4.789807 ACATTGAAATCTCCATCCAGAGG 58.210 43.478 0.00 0.00 34.46 3.69
4394 4601 6.712095 GCATAGTACATTGAAATCTCCATCCA 59.288 38.462 0.00 0.00 0.00 3.41
4397 4604 6.488006 GGTGCATAGTACATTGAAATCTCCAT 59.512 38.462 0.00 0.00 0.00 3.41
4468 4677 2.432628 GACGACGCAGAGGGTTGG 60.433 66.667 0.00 0.00 34.70 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.