Multiple sequence alignment - TraesCS3D01G085000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G085000 chr3D 100.000 2783 0 0 1 2783 42886818 42884036 0.000000e+00 5140
1 TraesCS3D01G085000 chr3D 89.415 718 50 12 796 1498 42839270 42839976 0.000000e+00 881
2 TraesCS3D01G085000 chr3D 84.874 238 24 8 1565 1802 42840069 42840294 2.160000e-56 230
3 TraesCS3D01G085000 chr3D 90.265 113 11 0 647 759 42839159 42839271 6.210000e-32 148
4 TraesCS3D01G085000 chr3B 91.365 1714 91 21 545 2231 66799204 66797521 0.000000e+00 2292
5 TraesCS3D01G085000 chr3B 85.268 1025 101 29 806 1802 66678657 66679659 0.000000e+00 1011
6 TraesCS3D01G085000 chr3B 97.107 553 16 0 2229 2781 219473998 219473446 0.000000e+00 933
7 TraesCS3D01G085000 chr3B 90.000 120 12 0 640 759 66678521 66678640 3.710000e-34 156
8 TraesCS3D01G085000 chr3B 94.118 102 5 1 732 832 66796913 66796812 1.330000e-33 154
9 TraesCS3D01G085000 chr3B 87.050 139 11 4 407 541 66799388 66799253 1.730000e-32 150
10 TraesCS3D01G085000 chr3A 88.720 1445 117 23 541 1967 54879809 54878393 0.000000e+00 1724
11 TraesCS3D01G085000 chr3A 86.614 127 13 2 419 541 54879976 54879850 1.340000e-28 137
12 TraesCS3D01G085000 chr7D 98.198 555 9 1 2229 2783 607102392 607102945 0.000000e+00 968
13 TraesCS3D01G085000 chr7D 97.658 555 13 0 2229 2783 75981874 75982428 0.000000e+00 953
14 TraesCS3D01G085000 chr4D 97.838 555 12 0 2229 2783 12186153 12186707 0.000000e+00 959
15 TraesCS3D01G085000 chr4D 97.838 555 12 0 2229 2783 505820297 505820851 0.000000e+00 959
16 TraesCS3D01G085000 chr4D 96.757 555 18 0 2229 2783 64747231 64747785 0.000000e+00 926
17 TraesCS3D01G085000 chr1D 97.477 555 14 0 2229 2783 376775560 376776114 0.000000e+00 948
18 TraesCS3D01G085000 chr4B 97.297 555 15 0 2229 2783 132857567 132857013 0.000000e+00 942
19 TraesCS3D01G085000 chr4A 96.396 555 20 0 2229 2783 545880129 545880683 0.000000e+00 915
20 TraesCS3D01G085000 chr6B 79.950 404 50 20 1098 1496 83195489 83195866 4.570000e-68 268
21 TraesCS3D01G085000 chr6A 79.950 404 50 20 1098 1496 47696914 47696537 4.570000e-68 268
22 TraesCS3D01G085000 chrUn 79.208 404 53 19 1098 1496 26594354 26594731 4.600000e-63 252


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G085000 chr3D 42884036 42886818 2782 True 5140.000000 5140 100.000000 1 2783 1 chr3D.!!$R1 2782
1 TraesCS3D01G085000 chr3D 42839159 42840294 1135 False 419.666667 881 88.184667 647 1802 3 chr3D.!!$F1 1155
2 TraesCS3D01G085000 chr3B 219473446 219473998 552 True 933.000000 933 97.107000 2229 2781 1 chr3B.!!$R1 552
3 TraesCS3D01G085000 chr3B 66796812 66799388 2576 True 865.333333 2292 90.844333 407 2231 3 chr3B.!!$R2 1824
4 TraesCS3D01G085000 chr3B 66678521 66679659 1138 False 583.500000 1011 87.634000 640 1802 2 chr3B.!!$F1 1162
5 TraesCS3D01G085000 chr3A 54878393 54879976 1583 True 930.500000 1724 87.667000 419 1967 2 chr3A.!!$R1 1548
6 TraesCS3D01G085000 chr7D 607102392 607102945 553 False 968.000000 968 98.198000 2229 2783 1 chr7D.!!$F2 554
7 TraesCS3D01G085000 chr7D 75981874 75982428 554 False 953.000000 953 97.658000 2229 2783 1 chr7D.!!$F1 554
8 TraesCS3D01G085000 chr4D 12186153 12186707 554 False 959.000000 959 97.838000 2229 2783 1 chr4D.!!$F1 554
9 TraesCS3D01G085000 chr4D 505820297 505820851 554 False 959.000000 959 97.838000 2229 2783 1 chr4D.!!$F3 554
10 TraesCS3D01G085000 chr4D 64747231 64747785 554 False 926.000000 926 96.757000 2229 2783 1 chr4D.!!$F2 554
11 TraesCS3D01G085000 chr1D 376775560 376776114 554 False 948.000000 948 97.477000 2229 2783 1 chr1D.!!$F1 554
12 TraesCS3D01G085000 chr4B 132857013 132857567 554 True 942.000000 942 97.297000 2229 2783 1 chr4B.!!$R1 554
13 TraesCS3D01G085000 chr4A 545880129 545880683 554 False 915.000000 915 96.396000 2229 2783 1 chr4A.!!$F1 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
992 1094 0.030908 CGGAGGATAAGGTCTGCGAC 59.969 60.0 0.0 0.79 45.41 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2721 3202 0.30776 AGACTTTCTTTGCCAACGCG 59.692 50.0 3.53 3.53 38.08 6.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 7.729124 AACTATTCTACAGTTAGGCCAACTA 57.271 36.000 16.88 5.47 46.04 2.24
32 33 7.729124 ACTATTCTACAGTTAGGCCAACTAA 57.271 36.000 16.88 10.30 46.04 2.24
33 34 8.142485 ACTATTCTACAGTTAGGCCAACTAAA 57.858 34.615 16.88 11.06 46.04 1.85
34 35 8.599792 ACTATTCTACAGTTAGGCCAACTAAAA 58.400 33.333 16.88 10.81 46.04 1.52
35 36 9.614792 CTATTCTACAGTTAGGCCAACTAAAAT 57.385 33.333 16.88 15.04 46.04 1.82
37 38 8.782339 TTCTACAGTTAGGCCAACTAAAATAC 57.218 34.615 16.88 0.00 46.04 1.89
38 39 7.909518 TCTACAGTTAGGCCAACTAAAATACA 58.090 34.615 16.88 0.67 46.04 2.29
39 40 8.545472 TCTACAGTTAGGCCAACTAAAATACAT 58.455 33.333 16.88 0.00 46.04 2.29
40 41 7.391148 ACAGTTAGGCCAACTAAAATACATG 57.609 36.000 16.88 0.00 46.04 3.21
41 42 7.172342 ACAGTTAGGCCAACTAAAATACATGA 58.828 34.615 16.88 0.00 46.04 3.07
42 43 7.336931 ACAGTTAGGCCAACTAAAATACATGAG 59.663 37.037 16.88 6.30 46.04 2.90
43 44 6.318900 AGTTAGGCCAACTAAAATACATGAGC 59.681 38.462 16.08 0.00 45.93 4.26
44 45 4.860022 AGGCCAACTAAAATACATGAGCT 58.140 39.130 5.01 0.00 0.00 4.09
45 46 6.001449 AGGCCAACTAAAATACATGAGCTA 57.999 37.500 5.01 0.00 0.00 3.32
46 47 6.423182 AGGCCAACTAAAATACATGAGCTAA 58.577 36.000 5.01 0.00 0.00 3.09
47 48 6.889722 AGGCCAACTAAAATACATGAGCTAAA 59.110 34.615 5.01 0.00 0.00 1.85
48 49 7.396055 AGGCCAACTAAAATACATGAGCTAAAA 59.604 33.333 5.01 0.00 0.00 1.52
49 50 8.197439 GGCCAACTAAAATACATGAGCTAAAAT 58.803 33.333 0.00 0.00 0.00 1.82
50 51 9.586435 GCCAACTAAAATACATGAGCTAAAATT 57.414 29.630 0.00 0.00 0.00 1.82
58 59 7.919313 ATACATGAGCTAAAATTTCATTGCG 57.081 32.000 0.00 0.00 29.48 4.85
59 60 5.953183 ACATGAGCTAAAATTTCATTGCGA 58.047 33.333 0.00 0.00 29.48 5.10
60 61 6.032094 ACATGAGCTAAAATTTCATTGCGAG 58.968 36.000 0.00 0.00 29.48 5.03
61 62 4.414852 TGAGCTAAAATTTCATTGCGAGC 58.585 39.130 0.00 0.00 0.00 5.03
62 63 3.774066 AGCTAAAATTTCATTGCGAGCC 58.226 40.909 0.00 0.00 0.00 4.70
63 64 3.193267 AGCTAAAATTTCATTGCGAGCCA 59.807 39.130 0.00 0.00 0.00 4.75
64 65 4.114794 GCTAAAATTTCATTGCGAGCCAT 58.885 39.130 0.00 0.00 0.00 4.40
65 66 4.026310 GCTAAAATTTCATTGCGAGCCATG 60.026 41.667 3.09 3.09 0.00 3.66
66 67 3.872511 AAATTTCATTGCGAGCCATGA 57.127 38.095 7.62 7.62 0.00 3.07
67 68 3.872511 AATTTCATTGCGAGCCATGAA 57.127 38.095 17.15 17.15 0.00 2.57
68 69 3.872511 ATTTCATTGCGAGCCATGAAA 57.127 38.095 27.67 27.67 44.05 2.69
69 70 3.872511 TTTCATTGCGAGCCATGAAAT 57.127 38.095 24.23 3.23 37.88 2.17
70 71 2.855660 TCATTGCGAGCCATGAAATG 57.144 45.000 9.05 4.49 46.21 2.32
103 104 7.427238 AAAAATCGTTCACGTGAAAGTTTAC 57.573 32.000 33.08 20.81 40.80 2.01
104 105 4.720530 ATCGTTCACGTGAAAGTTTACC 57.279 40.909 33.08 19.34 40.80 2.85
105 106 3.519579 TCGTTCACGTGAAAGTTTACCA 58.480 40.909 33.08 17.26 40.80 3.25
106 107 3.306703 TCGTTCACGTGAAAGTTTACCAC 59.693 43.478 33.08 18.96 40.80 4.16
107 108 3.544637 CGTTCACGTGAAAGTTTACCACC 60.545 47.826 31.20 14.22 35.58 4.61
108 109 3.263489 TCACGTGAAAGTTTACCACCA 57.737 42.857 17.62 0.00 0.00 4.17
109 110 2.937799 TCACGTGAAAGTTTACCACCAC 59.062 45.455 17.62 0.00 0.00 4.16
110 111 2.032426 CACGTGAAAGTTTACCACCACC 59.968 50.000 10.90 0.00 0.00 4.61
111 112 2.290464 CGTGAAAGTTTACCACCACCA 58.710 47.619 2.75 0.00 0.00 4.17
112 113 2.032426 CGTGAAAGTTTACCACCACCAC 59.968 50.000 2.75 0.00 0.00 4.16
113 114 3.018149 GTGAAAGTTTACCACCACCACA 58.982 45.455 0.00 0.00 0.00 4.17
114 115 3.444388 GTGAAAGTTTACCACCACCACAA 59.556 43.478 0.00 0.00 0.00 3.33
115 116 4.098807 GTGAAAGTTTACCACCACCACAAT 59.901 41.667 0.00 0.00 0.00 2.71
116 117 4.339814 TGAAAGTTTACCACCACCACAATC 59.660 41.667 0.00 0.00 0.00 2.67
117 118 3.586470 AGTTTACCACCACCACAATCA 57.414 42.857 0.00 0.00 0.00 2.57
118 119 3.904717 AGTTTACCACCACCACAATCAA 58.095 40.909 0.00 0.00 0.00 2.57
119 120 3.634910 AGTTTACCACCACCACAATCAAC 59.365 43.478 0.00 0.00 0.00 3.18
120 121 2.279935 TACCACCACCACAATCAACC 57.720 50.000 0.00 0.00 0.00 3.77
121 122 0.555769 ACCACCACCACAATCAACCT 59.444 50.000 0.00 0.00 0.00 3.50
122 123 0.961019 CCACCACCACAATCAACCTG 59.039 55.000 0.00 0.00 0.00 4.00
123 124 1.478471 CCACCACCACAATCAACCTGA 60.478 52.381 0.00 0.00 0.00 3.86
124 125 2.517959 CACCACCACAATCAACCTGAT 58.482 47.619 0.00 0.00 39.09 2.90
125 126 3.561097 CCACCACCACAATCAACCTGATA 60.561 47.826 0.00 0.00 35.76 2.15
126 127 4.078537 CACCACCACAATCAACCTGATAA 58.921 43.478 0.00 0.00 35.76 1.75
127 128 4.522405 CACCACCACAATCAACCTGATAAA 59.478 41.667 0.00 0.00 35.76 1.40
128 129 5.010516 CACCACCACAATCAACCTGATAAAA 59.989 40.000 0.00 0.00 35.76 1.52
129 130 5.010617 ACCACCACAATCAACCTGATAAAAC 59.989 40.000 0.00 0.00 35.76 2.43
130 131 5.243730 CCACCACAATCAACCTGATAAAACT 59.756 40.000 0.00 0.00 35.76 2.66
131 132 6.151691 CACCACAATCAACCTGATAAAACTG 58.848 40.000 0.00 0.00 35.76 3.16
132 133 5.833131 ACCACAATCAACCTGATAAAACTGT 59.167 36.000 0.00 0.00 35.76 3.55
133 134 6.016276 ACCACAATCAACCTGATAAAACTGTC 60.016 38.462 0.00 0.00 35.76 3.51
134 135 6.016360 CCACAATCAACCTGATAAAACTGTCA 60.016 38.462 0.00 0.00 35.76 3.58
135 136 6.857964 CACAATCAACCTGATAAAACTGTCAC 59.142 38.462 0.00 0.00 35.76 3.67
136 137 6.772716 ACAATCAACCTGATAAAACTGTCACT 59.227 34.615 0.00 0.00 35.76 3.41
137 138 7.041098 ACAATCAACCTGATAAAACTGTCACTC 60.041 37.037 0.00 0.00 35.76 3.51
138 139 5.924356 TCAACCTGATAAAACTGTCACTCA 58.076 37.500 0.00 0.00 0.00 3.41
139 140 6.652481 ATCAACCTGATAAAACTGTCACTCAG 59.348 38.462 0.00 0.00 41.49 3.35
140 141 8.699215 ATCAACCTGATAAAACTGTCACTCAGC 61.699 40.741 0.00 0.00 40.40 4.26
147 148 3.810579 CTGTCACTCAGCTCACCTC 57.189 57.895 0.00 0.00 37.36 3.85
148 149 1.255882 CTGTCACTCAGCTCACCTCT 58.744 55.000 0.00 0.00 37.36 3.69
149 150 1.617850 CTGTCACTCAGCTCACCTCTT 59.382 52.381 0.00 0.00 37.36 2.85
150 151 1.342496 TGTCACTCAGCTCACCTCTTG 59.658 52.381 0.00 0.00 0.00 3.02
151 152 0.972134 TCACTCAGCTCACCTCTTGG 59.028 55.000 0.00 0.00 39.83 3.61
153 154 1.071385 CACTCAGCTCACCTCTTGGTT 59.929 52.381 0.00 0.00 46.05 3.67
154 155 1.346068 ACTCAGCTCACCTCTTGGTTC 59.654 52.381 0.00 0.00 46.05 3.62
155 156 1.622811 CTCAGCTCACCTCTTGGTTCT 59.377 52.381 0.00 0.00 46.05 3.01
156 157 1.345741 TCAGCTCACCTCTTGGTTCTG 59.654 52.381 0.00 0.00 46.05 3.02
157 158 0.036022 AGCTCACCTCTTGGTTCTGC 59.964 55.000 0.00 0.00 46.05 4.26
158 159 0.036022 GCTCACCTCTTGGTTCTGCT 59.964 55.000 0.00 0.00 46.05 4.24
159 160 1.943507 GCTCACCTCTTGGTTCTGCTC 60.944 57.143 0.00 0.00 46.05 4.26
160 161 1.622811 CTCACCTCTTGGTTCTGCTCT 59.377 52.381 0.00 0.00 46.05 4.09
161 162 1.620819 TCACCTCTTGGTTCTGCTCTC 59.379 52.381 0.00 0.00 46.05 3.20
162 163 0.980423 ACCTCTTGGTTCTGCTCTCC 59.020 55.000 0.00 0.00 46.05 3.71
163 164 0.108424 CCTCTTGGTTCTGCTCTCCG 60.108 60.000 0.00 0.00 0.00 4.63
164 165 0.605589 CTCTTGGTTCTGCTCTCCGT 59.394 55.000 0.00 0.00 0.00 4.69
165 166 1.001406 CTCTTGGTTCTGCTCTCCGTT 59.999 52.381 0.00 0.00 0.00 4.44
166 167 1.416401 TCTTGGTTCTGCTCTCCGTTT 59.584 47.619 0.00 0.00 0.00 3.60
167 168 2.158813 TCTTGGTTCTGCTCTCCGTTTT 60.159 45.455 0.00 0.00 0.00 2.43
168 169 1.593196 TGGTTCTGCTCTCCGTTTTG 58.407 50.000 0.00 0.00 0.00 2.44
169 170 1.134220 TGGTTCTGCTCTCCGTTTTGT 60.134 47.619 0.00 0.00 0.00 2.83
170 171 2.103432 TGGTTCTGCTCTCCGTTTTGTA 59.897 45.455 0.00 0.00 0.00 2.41
171 172 2.479275 GGTTCTGCTCTCCGTTTTGTAC 59.521 50.000 0.00 0.00 0.00 2.90
172 173 2.450609 TCTGCTCTCCGTTTTGTACC 57.549 50.000 0.00 0.00 0.00 3.34
173 174 1.968493 TCTGCTCTCCGTTTTGTACCT 59.032 47.619 0.00 0.00 0.00 3.08
174 175 2.367567 TCTGCTCTCCGTTTTGTACCTT 59.632 45.455 0.00 0.00 0.00 3.50
175 176 3.139077 CTGCTCTCCGTTTTGTACCTTT 58.861 45.455 0.00 0.00 0.00 3.11
176 177 4.039488 TCTGCTCTCCGTTTTGTACCTTTA 59.961 41.667 0.00 0.00 0.00 1.85
177 178 4.706035 TGCTCTCCGTTTTGTACCTTTAA 58.294 39.130 0.00 0.00 0.00 1.52
178 179 4.512571 TGCTCTCCGTTTTGTACCTTTAAC 59.487 41.667 0.00 0.00 0.00 2.01
179 180 4.512571 GCTCTCCGTTTTGTACCTTTAACA 59.487 41.667 0.00 0.00 0.00 2.41
180 181 5.180680 GCTCTCCGTTTTGTACCTTTAACAT 59.819 40.000 0.00 0.00 0.00 2.71
181 182 6.548441 TCTCCGTTTTGTACCTTTAACATG 57.452 37.500 0.00 0.00 0.00 3.21
182 183 6.289834 TCTCCGTTTTGTACCTTTAACATGA 58.710 36.000 0.00 0.00 0.00 3.07
183 184 6.938030 TCTCCGTTTTGTACCTTTAACATGAT 59.062 34.615 0.00 0.00 0.00 2.45
184 185 7.118680 TCTCCGTTTTGTACCTTTAACATGATC 59.881 37.037 0.00 0.00 0.00 2.92
185 186 6.711194 TCCGTTTTGTACCTTTAACATGATCA 59.289 34.615 0.00 0.00 0.00 2.92
186 187 7.228906 TCCGTTTTGTACCTTTAACATGATCAA 59.771 33.333 0.00 0.00 0.00 2.57
187 188 7.325097 CCGTTTTGTACCTTTAACATGATCAAC 59.675 37.037 0.00 0.00 0.00 3.18
188 189 7.858382 CGTTTTGTACCTTTAACATGATCAACA 59.142 33.333 0.00 0.00 0.00 3.33
189 190 8.964150 GTTTTGTACCTTTAACATGATCAACAC 58.036 33.333 0.00 0.00 0.00 3.32
190 191 6.811253 TGTACCTTTAACATGATCAACACC 57.189 37.500 0.00 0.00 0.00 4.16
191 192 6.299922 TGTACCTTTAACATGATCAACACCA 58.700 36.000 0.00 0.00 0.00 4.17
192 193 6.773200 TGTACCTTTAACATGATCAACACCAA 59.227 34.615 0.00 0.00 0.00 3.67
193 194 6.723298 ACCTTTAACATGATCAACACCAAA 57.277 33.333 0.00 0.00 0.00 3.28
194 195 7.118496 ACCTTTAACATGATCAACACCAAAA 57.882 32.000 0.00 0.00 0.00 2.44
195 196 7.560368 ACCTTTAACATGATCAACACCAAAAA 58.440 30.769 0.00 0.00 0.00 1.94
215 216 4.712122 AAATAAACAGGCATTACCACGG 57.288 40.909 0.00 0.00 43.14 4.94
216 217 2.116827 TAAACAGGCATTACCACGGG 57.883 50.000 0.00 0.00 43.14 5.28
217 218 1.248101 AAACAGGCATTACCACGGGC 61.248 55.000 0.00 0.00 43.14 6.13
218 219 3.202001 CAGGCATTACCACGGGCG 61.202 66.667 0.00 0.00 43.14 6.13
219 220 3.712907 AGGCATTACCACGGGCGT 61.713 61.111 0.00 0.00 43.14 5.68
220 221 3.505184 GGCATTACCACGGGCGTG 61.505 66.667 0.00 0.00 45.02 5.34
249 250 2.787915 GCTTTCTGGCGCTAGTGC 59.212 61.111 20.91 20.17 0.00 4.40
250 251 2.034879 GCTTTCTGGCGCTAGTGCA 61.035 57.895 28.28 14.14 39.64 4.57
251 252 1.975363 GCTTTCTGGCGCTAGTGCAG 61.975 60.000 28.28 21.72 39.64 4.41
263 264 3.532892 CTAGTGCAGCTTCAACTGTTG 57.467 47.619 14.24 14.24 39.96 3.33
264 265 1.755179 AGTGCAGCTTCAACTGTTGT 58.245 45.000 19.12 0.00 39.96 3.32
265 266 2.917933 AGTGCAGCTTCAACTGTTGTA 58.082 42.857 19.12 9.82 39.96 2.41
266 267 3.278574 AGTGCAGCTTCAACTGTTGTAA 58.721 40.909 19.12 11.48 39.96 2.41
267 268 3.313526 AGTGCAGCTTCAACTGTTGTAAG 59.686 43.478 19.12 19.29 39.96 2.34
268 269 3.312421 GTGCAGCTTCAACTGTTGTAAGA 59.688 43.478 24.09 6.32 39.96 2.10
269 270 3.944650 TGCAGCTTCAACTGTTGTAAGAA 59.055 39.130 24.09 12.07 39.96 2.52
270 271 4.201910 TGCAGCTTCAACTGTTGTAAGAAC 60.202 41.667 24.09 16.53 39.96 3.01
271 272 4.035675 GCAGCTTCAACTGTTGTAAGAACT 59.964 41.667 24.09 15.33 39.96 3.01
272 273 5.505286 CAGCTTCAACTGTTGTAAGAACTG 58.495 41.667 24.09 19.74 32.78 3.16
273 274 5.294306 CAGCTTCAACTGTTGTAAGAACTGA 59.706 40.000 24.09 3.75 31.39 3.41
274 275 6.017605 CAGCTTCAACTGTTGTAAGAACTGAT 60.018 38.462 24.09 3.13 31.39 2.90
275 276 6.017605 AGCTTCAACTGTTGTAAGAACTGATG 60.018 38.462 24.09 8.47 0.00 3.07
276 277 6.017934 GCTTCAACTGTTGTAAGAACTGATGA 60.018 38.462 24.09 0.00 32.29 2.92
277 278 6.844696 TCAACTGTTGTAAGAACTGATGAC 57.155 37.500 19.12 0.00 30.37 3.06
278 279 6.345298 TCAACTGTTGTAAGAACTGATGACA 58.655 36.000 19.12 0.00 30.37 3.58
279 280 6.992123 TCAACTGTTGTAAGAACTGATGACAT 59.008 34.615 19.12 0.00 30.37 3.06
280 281 8.147704 TCAACTGTTGTAAGAACTGATGACATA 58.852 33.333 19.12 0.00 30.37 2.29
281 282 8.438513 CAACTGTTGTAAGAACTGATGACATAG 58.561 37.037 12.30 0.00 0.00 2.23
282 283 7.671302 ACTGTTGTAAGAACTGATGACATAGT 58.329 34.615 0.00 0.00 0.00 2.12
283 284 7.600375 ACTGTTGTAAGAACTGATGACATAGTG 59.400 37.037 0.00 0.00 0.00 2.74
284 285 7.441836 TGTTGTAAGAACTGATGACATAGTGT 58.558 34.615 0.00 0.00 0.00 3.55
285 286 8.581578 TGTTGTAAGAACTGATGACATAGTGTA 58.418 33.333 0.00 0.00 0.00 2.90
286 287 9.587772 GTTGTAAGAACTGATGACATAGTGTAT 57.412 33.333 0.00 0.00 0.00 2.29
293 294 9.250624 GAACTGATGACATAGTGTATTAGTTCC 57.749 37.037 15.90 7.47 34.61 3.62
294 295 8.306313 ACTGATGACATAGTGTATTAGTTCCA 57.694 34.615 0.00 0.00 0.00 3.53
295 296 8.928448 ACTGATGACATAGTGTATTAGTTCCAT 58.072 33.333 0.00 0.00 0.00 3.41
300 301 9.811995 TGACATAGTGTATTAGTTCCATACAAC 57.188 33.333 0.00 0.00 38.54 3.32
301 302 9.811995 GACATAGTGTATTAGTTCCATACAACA 57.188 33.333 0.00 0.00 38.54 3.33
302 303 9.817809 ACATAGTGTATTAGTTCCATACAACAG 57.182 33.333 0.00 0.00 38.54 3.16
303 304 8.765219 CATAGTGTATTAGTTCCATACAACAGC 58.235 37.037 0.00 0.00 38.54 4.40
304 305 6.947464 AGTGTATTAGTTCCATACAACAGCT 58.053 36.000 0.00 0.00 38.54 4.24
305 306 7.042335 AGTGTATTAGTTCCATACAACAGCTC 58.958 38.462 0.00 0.00 38.54 4.09
306 307 7.042335 GTGTATTAGTTCCATACAACAGCTCT 58.958 38.462 0.00 0.00 38.54 4.09
307 308 7.549488 GTGTATTAGTTCCATACAACAGCTCTT 59.451 37.037 0.00 0.00 38.54 2.85
308 309 7.764443 TGTATTAGTTCCATACAACAGCTCTTC 59.236 37.037 0.00 0.00 34.77 2.87
309 310 4.899352 AGTTCCATACAACAGCTCTTCT 57.101 40.909 0.00 0.00 0.00 2.85
310 311 4.826556 AGTTCCATACAACAGCTCTTCTC 58.173 43.478 0.00 0.00 0.00 2.87
311 312 4.284490 AGTTCCATACAACAGCTCTTCTCA 59.716 41.667 0.00 0.00 0.00 3.27
312 313 4.462508 TCCATACAACAGCTCTTCTCAG 57.537 45.455 0.00 0.00 0.00 3.35
313 314 4.089361 TCCATACAACAGCTCTTCTCAGA 58.911 43.478 0.00 0.00 0.00 3.27
329 330 8.093659 TCTTCTCAGAGATATGATAACTGTCG 57.906 38.462 0.00 0.00 0.00 4.35
330 331 7.934120 TCTTCTCAGAGATATGATAACTGTCGA 59.066 37.037 0.00 0.00 0.00 4.20
331 332 8.451908 TTCTCAGAGATATGATAACTGTCGAA 57.548 34.615 0.00 0.00 0.00 3.71
332 333 7.866729 TCTCAGAGATATGATAACTGTCGAAC 58.133 38.462 0.00 0.00 0.00 3.95
333 334 6.971602 TCAGAGATATGATAACTGTCGAACC 58.028 40.000 0.00 0.00 0.00 3.62
334 335 6.546034 TCAGAGATATGATAACTGTCGAACCA 59.454 38.462 0.00 0.00 0.00 3.67
335 336 7.231519 TCAGAGATATGATAACTGTCGAACCAT 59.768 37.037 0.00 0.00 0.00 3.55
336 337 7.328005 CAGAGATATGATAACTGTCGAACCATG 59.672 40.741 0.00 0.00 0.00 3.66
337 338 7.014711 AGAGATATGATAACTGTCGAACCATGT 59.985 37.037 0.00 0.00 0.00 3.21
338 339 7.500992 AGATATGATAACTGTCGAACCATGTT 58.499 34.615 0.00 0.00 0.00 2.71
339 340 5.801350 ATGATAACTGTCGAACCATGTTG 57.199 39.130 0.00 0.00 0.00 3.33
340 341 3.435327 TGATAACTGTCGAACCATGTTGC 59.565 43.478 0.00 0.00 0.00 4.17
341 342 1.674359 AACTGTCGAACCATGTTGCA 58.326 45.000 0.00 0.00 0.00 4.08
342 343 1.674359 ACTGTCGAACCATGTTGCAA 58.326 45.000 0.00 0.00 0.00 4.08
343 344 1.603802 ACTGTCGAACCATGTTGCAAG 59.396 47.619 0.00 0.00 0.00 4.01
344 345 1.872952 CTGTCGAACCATGTTGCAAGA 59.127 47.619 0.00 0.00 0.00 3.02
345 346 2.485426 CTGTCGAACCATGTTGCAAGAT 59.515 45.455 2.67 2.67 0.00 2.40
346 347 3.669536 TGTCGAACCATGTTGCAAGATA 58.330 40.909 9.00 0.00 0.00 1.98
347 348 4.260985 TGTCGAACCATGTTGCAAGATAT 58.739 39.130 9.00 0.00 0.00 1.63
348 349 4.699735 TGTCGAACCATGTTGCAAGATATT 59.300 37.500 9.00 6.85 0.00 1.28
349 350 5.182950 TGTCGAACCATGTTGCAAGATATTT 59.817 36.000 9.00 5.24 0.00 1.40
350 351 6.092748 GTCGAACCATGTTGCAAGATATTTT 58.907 36.000 9.00 2.76 0.00 1.82
351 352 6.251376 GTCGAACCATGTTGCAAGATATTTTC 59.749 38.462 9.00 10.41 0.00 2.29
352 353 6.150976 TCGAACCATGTTGCAAGATATTTTCT 59.849 34.615 9.00 0.00 35.70 2.52
353 354 6.808212 CGAACCATGTTGCAAGATATTTTCTT 59.192 34.615 9.00 0.00 45.83 2.52
369 370 9.114952 GATATTTTCTTGTTCTCCTTCTAAGGG 57.885 37.037 8.87 0.60 46.47 3.95
370 371 6.509523 TTTTCTTGTTCTCCTTCTAAGGGA 57.490 37.500 8.87 2.89 46.47 4.20
379 380 5.443230 CTCCTTCTAAGGGAGGAAATGTT 57.557 43.478 8.87 0.00 46.47 2.71
380 381 5.821097 CTCCTTCTAAGGGAGGAAATGTTT 58.179 41.667 8.87 0.00 46.47 2.83
381 382 5.570320 TCCTTCTAAGGGAGGAAATGTTTG 58.430 41.667 8.87 0.00 46.47 2.93
382 383 5.312178 TCCTTCTAAGGGAGGAAATGTTTGA 59.688 40.000 8.87 0.00 46.47 2.69
383 384 5.416013 CCTTCTAAGGGAGGAAATGTTTGAC 59.584 44.000 0.42 0.00 42.66 3.18
384 385 5.843019 TCTAAGGGAGGAAATGTTTGACT 57.157 39.130 0.00 0.00 0.00 3.41
385 386 5.560724 TCTAAGGGAGGAAATGTTTGACTG 58.439 41.667 0.00 0.00 0.00 3.51
386 387 4.453480 AAGGGAGGAAATGTTTGACTGA 57.547 40.909 0.00 0.00 0.00 3.41
387 388 4.453480 AGGGAGGAAATGTTTGACTGAA 57.547 40.909 0.00 0.00 0.00 3.02
388 389 4.803452 AGGGAGGAAATGTTTGACTGAAA 58.197 39.130 0.00 0.00 0.00 2.69
389 390 5.208121 AGGGAGGAAATGTTTGACTGAAAA 58.792 37.500 0.00 0.00 0.00 2.29
390 391 5.302823 AGGGAGGAAATGTTTGACTGAAAAG 59.697 40.000 0.00 0.00 0.00 2.27
391 392 4.984785 GGAGGAAATGTTTGACTGAAAAGC 59.015 41.667 0.00 0.00 0.00 3.51
392 393 5.451798 GGAGGAAATGTTTGACTGAAAAGCA 60.452 40.000 0.00 0.00 0.00 3.91
415 416 2.926200 CACTGCACTGCTGTACTGTATC 59.074 50.000 12.69 0.00 38.59 2.24
416 417 2.562738 ACTGCACTGCTGTACTGTATCA 59.437 45.455 11.54 0.00 38.85 2.15
417 418 3.185330 CTGCACTGCTGTACTGTATCAG 58.815 50.000 1.98 10.90 37.52 2.90
426 427 4.962693 CTGTACTGTATCAGCAGCAAAAC 58.037 43.478 0.00 0.00 39.96 2.43
435 436 4.071961 TCAGCAGCAAAACTCTAGTCAA 57.928 40.909 0.00 0.00 0.00 3.18
440 441 5.048434 AGCAGCAAAACTCTAGTCAAATTCC 60.048 40.000 0.00 0.00 0.00 3.01
451 452 5.867716 TCTAGTCAAATTCCTACTGCGAAAC 59.132 40.000 0.00 0.00 0.00 2.78
461 462 0.472471 ACTGCGAAACTGGGAGGAAA 59.528 50.000 0.00 0.00 0.00 3.13
470 471 3.670105 TGGGAGGAAACCAGCATTC 57.330 52.632 0.00 0.00 33.23 2.67
477 478 2.238646 AGGAAACCAGCATTCGACCATA 59.761 45.455 0.00 0.00 0.00 2.74
478 479 3.013921 GGAAACCAGCATTCGACCATAA 58.986 45.455 0.00 0.00 0.00 1.90
479 480 3.632145 GGAAACCAGCATTCGACCATAAT 59.368 43.478 0.00 0.00 0.00 1.28
489 494 4.955811 TTCGACCATAATAGGTGCTGAT 57.044 40.909 0.00 0.00 43.38 2.90
543 548 9.618890 TGCCTATTCATATTGATATTCCTTAGC 57.381 33.333 0.00 0.00 0.00 3.09
562 612 0.393537 CCTGGCTGTCCCATCAAGTC 60.394 60.000 0.00 0.00 44.33 3.01
566 616 1.673168 GCTGTCCCATCAAGTCCATC 58.327 55.000 0.00 0.00 0.00 3.51
580 630 2.901839 AGTCCATCTTGCAGCCAAAATT 59.098 40.909 0.00 0.00 0.00 1.82
582 632 3.056322 GTCCATCTTGCAGCCAAAATTCT 60.056 43.478 0.00 0.00 0.00 2.40
597 647 9.463443 AGCCAAAATTCTAATTTATATGAACGC 57.537 29.630 1.30 0.00 37.62 4.84
651 711 6.827641 TCGCTTGTAGCATGTAACTAAAAAG 58.172 36.000 0.00 0.00 42.58 2.27
679 739 6.094464 CAGTAGTGGAATTGATCATTCTTGCA 59.906 38.462 0.00 0.00 41.22 4.08
685 746 5.815740 GGAATTGATCATTCTTGCAGCAATT 59.184 36.000 8.67 0.00 41.22 2.32
716 777 8.292444 TCTCCTTAATTTGGTGTAATTGGATG 57.708 34.615 0.00 0.00 0.00 3.51
803 869 3.197434 TCGATTATGCGGTACTCATCG 57.803 47.619 4.80 0.00 34.64 3.84
828 908 7.253552 CGCTGAAACTTGATATTTGCTTCATTC 60.254 37.037 0.00 0.00 0.00 2.67
834 914 8.211116 ACTTGATATTTGCTTCATTCTCTCTG 57.789 34.615 0.00 0.00 0.00 3.35
850 934 9.597170 CATTCTCTCTGAACTTGATAAATCTCA 57.403 33.333 0.00 0.00 37.52 3.27
906 994 4.262164 GGATGGTATAAATTTGCTGCCCAG 60.262 45.833 0.00 0.00 0.00 4.45
909 998 3.243068 GGTATAAATTTGCTGCCCAGTCG 60.243 47.826 0.00 0.00 0.00 4.18
974 1076 0.861837 GCAGACAGACAGGTGAAACG 59.138 55.000 0.00 0.00 38.12 3.60
975 1077 1.502231 CAGACAGACAGGTGAAACGG 58.498 55.000 0.00 0.00 38.12 4.44
977 1079 1.341531 AGACAGACAGGTGAAACGGAG 59.658 52.381 0.00 0.00 38.12 4.63
989 1091 2.093658 TGAAACGGAGGATAAGGTCTGC 60.094 50.000 0.00 0.00 0.00 4.26
991 1093 0.395311 ACGGAGGATAAGGTCTGCGA 60.395 55.000 10.83 0.00 45.41 5.10
992 1094 0.030908 CGGAGGATAAGGTCTGCGAC 59.969 60.000 0.00 0.79 45.41 5.19
993 1095 1.112113 GGAGGATAAGGTCTGCGACA 58.888 55.000 10.14 0.00 33.68 4.35
1025 1130 4.025858 GCCACTGCTCCAGCTCCA 62.026 66.667 0.00 0.00 42.66 3.86
1026 1131 2.268280 CCACTGCTCCAGCTCCAG 59.732 66.667 0.00 0.00 42.66 3.86
1027 1132 2.436292 CACTGCTCCAGCTCCAGC 60.436 66.667 6.49 6.49 42.66 4.85
1044 1149 4.218578 CTCCTGCTCATCGCCGCT 62.219 66.667 0.00 0.00 38.05 5.52
1045 1150 4.519437 TCCTGCTCATCGCCGCTG 62.519 66.667 0.00 0.00 38.05 5.18
1528 1664 1.694150 CCGCGATCCATATATCCCCAT 59.306 52.381 8.23 0.00 0.00 4.00
1531 1667 3.320826 CGCGATCCATATATCCCCATGTA 59.679 47.826 0.00 0.00 0.00 2.29
1548 1684 6.659242 CCCCATGTAATGTCTGAACTTTACTT 59.341 38.462 12.60 6.48 44.81 2.24
1787 1928 0.245539 GCCGCCGCCTACTGATAATA 59.754 55.000 0.00 0.00 0.00 0.98
1847 1989 3.372025 GCTACTGGGGAAATGGTTCATCT 60.372 47.826 0.00 0.00 35.25 2.90
1863 2005 5.428253 GTTCATCTAACCATTGCTACTGGA 58.572 41.667 6.75 0.00 37.22 3.86
1954 2096 1.935873 CCCATGCACAAGTACTGATCG 59.064 52.381 0.00 0.00 0.00 3.69
2013 2155 6.214819 ACTTAAAGATAACACCCTTCTGCCTA 59.785 38.462 0.00 0.00 0.00 3.93
2014 2156 5.717119 AAAGATAACACCCTTCTGCCTAT 57.283 39.130 0.00 0.00 0.00 2.57
2020 2162 2.706190 ACACCCTTCTGCCTATATCCAC 59.294 50.000 0.00 0.00 0.00 4.02
2055 2197 9.691362 TGAAATTTCTTTTGGAAGCTTACATAC 57.309 29.630 13.36 0.00 35.16 2.39
2064 2206 5.543714 TGGAAGCTTACATACGAAGTTGAA 58.456 37.500 7.47 0.00 37.78 2.69
2075 2217 8.948853 ACATACGAAGTTGAAACATGTTTATG 57.051 30.769 23.33 19.68 37.78 1.90
2076 2218 7.537306 ACATACGAAGTTGAAACATGTTTATGC 59.463 33.333 23.33 15.12 37.78 3.14
2077 2219 5.826586 ACGAAGTTGAAACATGTTTATGCA 58.173 33.333 23.33 14.48 37.78 3.96
2078 2220 6.269315 ACGAAGTTGAAACATGTTTATGCAA 58.731 32.000 23.33 19.07 37.78 4.08
2079 2221 6.754209 ACGAAGTTGAAACATGTTTATGCAAA 59.246 30.769 23.33 10.41 37.78 3.68
2080 2222 7.043458 ACGAAGTTGAAACATGTTTATGCAAAG 60.043 33.333 23.33 14.77 37.78 2.77
2081 2223 7.043458 CGAAGTTGAAACATGTTTATGCAAAGT 60.043 33.333 23.33 13.52 37.85 2.66
2114 2256 7.620880 TGTAGTTTCTGATGCATAAGTACCTT 58.379 34.615 11.02 0.01 0.00 3.50
2195 2341 6.985653 TCATTCTTGGAAACCCATGTTTTA 57.014 33.333 0.00 0.00 44.57 1.52
2202 2348 4.346418 TGGAAACCCATGTTTTATTGTGCT 59.654 37.500 0.00 0.00 44.57 4.40
2204 2350 5.179182 GGAAACCCATGTTTTATTGTGCTTG 59.821 40.000 0.00 0.00 44.57 4.01
2403 2709 3.536917 CGATGGCGCCTGAGGGTA 61.537 66.667 29.70 5.17 34.45 3.69
2620 3101 1.758783 GCTGTTTTTGGTGAAGCTCG 58.241 50.000 0.00 0.00 0.00 5.03
2721 3202 1.304381 TGCTTCAAGGGTGGATGGC 60.304 57.895 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 6.318900 AGCTCATGTATTTTAGTTGGCCTAAC 59.681 38.462 3.32 7.14 35.36 2.34
20 21 6.423182 AGCTCATGTATTTTAGTTGGCCTAA 58.577 36.000 3.32 0.00 33.77 2.69
21 22 6.001449 AGCTCATGTATTTTAGTTGGCCTA 57.999 37.500 3.32 0.00 0.00 3.93
22 23 4.860022 AGCTCATGTATTTTAGTTGGCCT 58.140 39.130 3.32 0.00 0.00 5.19
23 24 6.693315 TTAGCTCATGTATTTTAGTTGGCC 57.307 37.500 0.00 0.00 0.00 5.36
24 25 9.586435 AATTTTAGCTCATGTATTTTAGTTGGC 57.414 29.630 0.00 0.00 0.00 4.52
32 33 8.810427 CGCAATGAAATTTTAGCTCATGTATTT 58.190 29.630 0.00 0.00 31.22 1.40
33 34 8.190122 TCGCAATGAAATTTTAGCTCATGTATT 58.810 29.630 0.00 0.00 31.22 1.89
34 35 7.706159 TCGCAATGAAATTTTAGCTCATGTAT 58.294 30.769 0.00 0.00 31.22 2.29
35 36 7.082700 TCGCAATGAAATTTTAGCTCATGTA 57.917 32.000 0.00 0.00 31.22 2.29
36 37 5.953183 TCGCAATGAAATTTTAGCTCATGT 58.047 33.333 0.00 0.00 31.22 3.21
37 38 5.051907 GCTCGCAATGAAATTTTAGCTCATG 60.052 40.000 0.00 0.00 31.22 3.07
38 39 5.039333 GCTCGCAATGAAATTTTAGCTCAT 58.961 37.500 0.00 0.00 31.22 2.90
39 40 4.414852 GCTCGCAATGAAATTTTAGCTCA 58.585 39.130 0.00 0.00 31.22 4.26
40 41 3.793492 GGCTCGCAATGAAATTTTAGCTC 59.207 43.478 0.00 0.00 34.73 4.09
41 42 3.193267 TGGCTCGCAATGAAATTTTAGCT 59.807 39.130 0.00 0.00 34.73 3.32
42 43 3.510719 TGGCTCGCAATGAAATTTTAGC 58.489 40.909 0.00 0.00 31.22 3.09
43 44 5.342433 TCATGGCTCGCAATGAAATTTTAG 58.658 37.500 6.50 0.00 33.78 1.85
44 45 5.321959 TCATGGCTCGCAATGAAATTTTA 57.678 34.783 6.50 0.00 33.78 1.52
45 46 4.191033 TCATGGCTCGCAATGAAATTTT 57.809 36.364 6.50 0.00 33.78 1.82
46 47 3.872511 TCATGGCTCGCAATGAAATTT 57.127 38.095 6.50 0.00 33.78 1.82
47 48 3.872511 TTCATGGCTCGCAATGAAATT 57.127 38.095 17.05 0.00 41.76 1.82
48 49 3.872511 TTTCATGGCTCGCAATGAAAT 57.127 38.095 23.64 0.00 45.88 2.17
50 51 2.754002 TCATTTCATGGCTCGCAATGAA 59.246 40.909 15.78 15.78 42.66 2.57
51 52 2.367486 TCATTTCATGGCTCGCAATGA 58.633 42.857 4.88 4.88 34.80 2.57
52 53 2.855660 TCATTTCATGGCTCGCAATG 57.144 45.000 0.00 0.00 0.00 2.82
53 54 2.492881 TGTTCATTTCATGGCTCGCAAT 59.507 40.909 0.00 0.00 0.00 3.56
54 55 1.885233 TGTTCATTTCATGGCTCGCAA 59.115 42.857 0.00 0.00 0.00 4.85
55 56 1.469703 CTGTTCATTTCATGGCTCGCA 59.530 47.619 0.00 0.00 0.00 5.10
56 57 1.739466 TCTGTTCATTTCATGGCTCGC 59.261 47.619 0.00 0.00 0.00 5.03
57 58 2.743664 TGTCTGTTCATTTCATGGCTCG 59.256 45.455 0.00 0.00 0.00 5.03
58 59 4.771590 TTGTCTGTTCATTTCATGGCTC 57.228 40.909 0.00 0.00 0.00 4.70
59 60 5.534207 TTTTGTCTGTTCATTTCATGGCT 57.466 34.783 0.00 0.00 0.00 4.75
79 80 6.469915 GGTAAACTTTCACGTGAACGATTTTT 59.530 34.615 33.46 25.34 43.02 1.94
80 81 5.967088 GGTAAACTTTCACGTGAACGATTTT 59.033 36.000 33.46 25.88 43.02 1.82
81 82 5.064962 TGGTAAACTTTCACGTGAACGATTT 59.935 36.000 33.46 28.68 43.02 2.17
82 83 4.571580 TGGTAAACTTTCACGTGAACGATT 59.428 37.500 33.46 29.33 43.02 3.34
83 84 4.025480 GTGGTAAACTTTCACGTGAACGAT 60.025 41.667 33.46 23.01 43.02 3.73
84 85 3.306703 GTGGTAAACTTTCACGTGAACGA 59.693 43.478 33.46 19.52 43.02 3.85
85 86 3.544637 GGTGGTAAACTTTCACGTGAACG 60.545 47.826 29.74 28.48 46.33 3.95
86 87 3.374678 TGGTGGTAAACTTTCACGTGAAC 59.625 43.478 29.74 17.82 33.13 3.18
87 88 3.374678 GTGGTGGTAAACTTTCACGTGAA 59.625 43.478 26.53 26.53 32.65 3.18
88 89 2.937799 GTGGTGGTAAACTTTCACGTGA 59.062 45.455 15.76 15.76 32.65 4.35
89 90 2.032426 GGTGGTGGTAAACTTTCACGTG 59.968 50.000 9.94 9.94 32.65 4.49
90 91 2.291365 GGTGGTGGTAAACTTTCACGT 58.709 47.619 0.00 0.00 32.65 4.49
91 92 2.032426 GTGGTGGTGGTAAACTTTCACG 59.968 50.000 0.00 0.00 32.65 4.35
92 93 3.018149 TGTGGTGGTGGTAAACTTTCAC 58.982 45.455 0.00 0.00 0.00 3.18
93 94 3.367646 TGTGGTGGTGGTAAACTTTCA 57.632 42.857 0.00 0.00 0.00 2.69
94 95 4.339814 TGATTGTGGTGGTGGTAAACTTTC 59.660 41.667 0.00 0.00 0.00 2.62
95 96 4.282496 TGATTGTGGTGGTGGTAAACTTT 58.718 39.130 0.00 0.00 0.00 2.66
96 97 3.904717 TGATTGTGGTGGTGGTAAACTT 58.095 40.909 0.00 0.00 0.00 2.66
97 98 3.586470 TGATTGTGGTGGTGGTAAACT 57.414 42.857 0.00 0.00 0.00 2.66
98 99 3.243602 GGTTGATTGTGGTGGTGGTAAAC 60.244 47.826 0.00 0.00 0.00 2.01
99 100 2.959707 GGTTGATTGTGGTGGTGGTAAA 59.040 45.455 0.00 0.00 0.00 2.01
100 101 2.175931 AGGTTGATTGTGGTGGTGGTAA 59.824 45.455 0.00 0.00 0.00 2.85
101 102 1.777878 AGGTTGATTGTGGTGGTGGTA 59.222 47.619 0.00 0.00 0.00 3.25
102 103 0.555769 AGGTTGATTGTGGTGGTGGT 59.444 50.000 0.00 0.00 0.00 4.16
103 104 0.961019 CAGGTTGATTGTGGTGGTGG 59.039 55.000 0.00 0.00 0.00 4.61
104 105 1.979855 TCAGGTTGATTGTGGTGGTG 58.020 50.000 0.00 0.00 0.00 4.17
105 106 2.978156 ATCAGGTTGATTGTGGTGGT 57.022 45.000 0.00 0.00 32.13 4.16
106 107 5.243730 AGTTTTATCAGGTTGATTGTGGTGG 59.756 40.000 0.00 0.00 38.26 4.61
107 108 6.151691 CAGTTTTATCAGGTTGATTGTGGTG 58.848 40.000 0.00 0.00 38.26 4.17
108 109 5.833131 ACAGTTTTATCAGGTTGATTGTGGT 59.167 36.000 0.00 0.00 38.26 4.16
109 110 6.016360 TGACAGTTTTATCAGGTTGATTGTGG 60.016 38.462 0.00 0.00 38.26 4.17
110 111 6.857964 GTGACAGTTTTATCAGGTTGATTGTG 59.142 38.462 0.00 0.00 38.26 3.33
111 112 6.772716 AGTGACAGTTTTATCAGGTTGATTGT 59.227 34.615 0.00 0.00 38.26 2.71
112 113 7.041167 TGAGTGACAGTTTTATCAGGTTGATTG 60.041 37.037 0.00 0.00 38.26 2.67
113 114 6.998074 TGAGTGACAGTTTTATCAGGTTGATT 59.002 34.615 0.00 0.00 38.26 2.57
114 115 6.533730 TGAGTGACAGTTTTATCAGGTTGAT 58.466 36.000 0.00 0.00 40.72 2.57
115 116 5.924356 TGAGTGACAGTTTTATCAGGTTGA 58.076 37.500 0.00 0.00 0.00 3.18
116 117 6.233430 CTGAGTGACAGTTTTATCAGGTTG 57.767 41.667 0.00 0.00 41.30 3.77
130 131 1.342496 CAAGAGGTGAGCTGAGTGACA 59.658 52.381 0.00 0.00 0.00 3.58
131 132 1.337635 CCAAGAGGTGAGCTGAGTGAC 60.338 57.143 0.00 0.00 0.00 3.67
132 133 0.972134 CCAAGAGGTGAGCTGAGTGA 59.028 55.000 0.00 0.00 0.00 3.41
133 134 3.529252 CCAAGAGGTGAGCTGAGTG 57.471 57.895 0.00 0.00 0.00 3.51
144 145 0.108424 CGGAGAGCAGAACCAAGAGG 60.108 60.000 0.00 0.00 42.21 3.69
145 146 0.605589 ACGGAGAGCAGAACCAAGAG 59.394 55.000 0.00 0.00 0.00 2.85
146 147 1.048601 AACGGAGAGCAGAACCAAGA 58.951 50.000 0.00 0.00 0.00 3.02
147 148 1.884235 AAACGGAGAGCAGAACCAAG 58.116 50.000 0.00 0.00 0.00 3.61
148 149 1.946768 CAAAACGGAGAGCAGAACCAA 59.053 47.619 0.00 0.00 0.00 3.67
149 150 1.134220 ACAAAACGGAGAGCAGAACCA 60.134 47.619 0.00 0.00 0.00 3.67
150 151 1.594331 ACAAAACGGAGAGCAGAACC 58.406 50.000 0.00 0.00 0.00 3.62
151 152 2.479275 GGTACAAAACGGAGAGCAGAAC 59.521 50.000 0.00 0.00 0.00 3.01
152 153 2.367567 AGGTACAAAACGGAGAGCAGAA 59.632 45.455 0.00 0.00 0.00 3.02
153 154 1.968493 AGGTACAAAACGGAGAGCAGA 59.032 47.619 0.00 0.00 0.00 4.26
154 155 2.457366 AGGTACAAAACGGAGAGCAG 57.543 50.000 0.00 0.00 0.00 4.24
155 156 2.922740 AAGGTACAAAACGGAGAGCA 57.077 45.000 0.00 0.00 0.00 4.26
156 157 4.512571 TGTTAAAGGTACAAAACGGAGAGC 59.487 41.667 0.00 0.00 0.00 4.09
157 158 6.425721 TCATGTTAAAGGTACAAAACGGAGAG 59.574 38.462 0.00 0.00 0.00 3.20
158 159 6.289834 TCATGTTAAAGGTACAAAACGGAGA 58.710 36.000 0.00 0.00 0.00 3.71
159 160 6.548441 TCATGTTAAAGGTACAAAACGGAG 57.452 37.500 0.00 0.00 0.00 4.63
160 161 6.711194 TGATCATGTTAAAGGTACAAAACGGA 59.289 34.615 0.00 0.00 0.00 4.69
161 162 6.904498 TGATCATGTTAAAGGTACAAAACGG 58.096 36.000 0.00 0.00 0.00 4.44
162 163 7.858382 TGTTGATCATGTTAAAGGTACAAAACG 59.142 33.333 0.00 0.00 0.00 3.60
163 164 8.964150 GTGTTGATCATGTTAAAGGTACAAAAC 58.036 33.333 0.00 0.00 0.00 2.43
164 165 8.138712 GGTGTTGATCATGTTAAAGGTACAAAA 58.861 33.333 0.00 0.00 0.00 2.44
165 166 7.285629 TGGTGTTGATCATGTTAAAGGTACAAA 59.714 33.333 0.00 0.00 0.00 2.83
166 167 6.773200 TGGTGTTGATCATGTTAAAGGTACAA 59.227 34.615 0.00 0.00 0.00 2.41
167 168 6.299922 TGGTGTTGATCATGTTAAAGGTACA 58.700 36.000 0.00 0.00 0.00 2.90
168 169 6.811253 TGGTGTTGATCATGTTAAAGGTAC 57.189 37.500 0.00 0.00 0.00 3.34
169 170 7.825331 TTTGGTGTTGATCATGTTAAAGGTA 57.175 32.000 0.00 0.00 0.00 3.08
170 171 6.723298 TTTGGTGTTGATCATGTTAAAGGT 57.277 33.333 0.00 0.00 0.00 3.50
192 193 5.474825 CCGTGGTAATGCCTGTTTATTTTT 58.525 37.500 0.00 0.00 38.35 1.94
193 194 4.081917 CCCGTGGTAATGCCTGTTTATTTT 60.082 41.667 0.00 0.00 38.35 1.82
194 195 3.445805 CCCGTGGTAATGCCTGTTTATTT 59.554 43.478 0.00 0.00 38.35 1.40
195 196 3.020984 CCCGTGGTAATGCCTGTTTATT 58.979 45.455 0.00 0.00 38.35 1.40
196 197 2.650322 CCCGTGGTAATGCCTGTTTAT 58.350 47.619 0.00 0.00 38.35 1.40
197 198 1.951424 GCCCGTGGTAATGCCTGTTTA 60.951 52.381 0.00 0.00 38.35 2.01
198 199 1.248101 GCCCGTGGTAATGCCTGTTT 61.248 55.000 0.00 0.00 38.35 2.83
199 200 1.677633 GCCCGTGGTAATGCCTGTT 60.678 57.895 0.00 0.00 38.35 3.16
200 201 2.045340 GCCCGTGGTAATGCCTGT 60.045 61.111 0.00 0.00 38.35 4.00
201 202 3.202001 CGCCCGTGGTAATGCCTG 61.202 66.667 0.00 0.00 38.35 4.85
202 203 3.712907 ACGCCCGTGGTAATGCCT 61.713 61.111 0.00 0.00 38.35 4.75
203 204 3.505184 CACGCCCGTGGTAATGCC 61.505 66.667 12.66 0.00 42.00 4.40
232 233 1.975363 CTGCACTAGCGCCAGAAAGC 61.975 60.000 10.59 10.91 46.23 3.51
233 234 1.975363 GCTGCACTAGCGCCAGAAAG 61.975 60.000 10.59 4.93 46.23 2.62
234 235 2.034879 GCTGCACTAGCGCCAGAAA 61.035 57.895 10.59 0.00 46.23 2.52
235 236 2.434884 GCTGCACTAGCGCCAGAA 60.435 61.111 10.59 0.00 46.23 3.02
243 244 2.874701 ACAACAGTTGAAGCTGCACTAG 59.125 45.455 20.56 0.00 39.96 2.57
244 245 2.917933 ACAACAGTTGAAGCTGCACTA 58.082 42.857 20.56 0.00 39.96 2.74
245 246 1.755179 ACAACAGTTGAAGCTGCACT 58.245 45.000 20.56 0.00 39.96 4.40
246 247 3.312421 TCTTACAACAGTTGAAGCTGCAC 59.688 43.478 20.56 0.00 39.96 4.57
247 248 3.540617 TCTTACAACAGTTGAAGCTGCA 58.459 40.909 20.56 0.00 39.96 4.41
248 249 4.035675 AGTTCTTACAACAGTTGAAGCTGC 59.964 41.667 20.56 10.96 39.96 5.25
249 250 5.294306 TCAGTTCTTACAACAGTTGAAGCTG 59.706 40.000 20.56 17.81 41.92 4.24
250 251 5.428253 TCAGTTCTTACAACAGTTGAAGCT 58.572 37.500 20.56 9.18 0.00 3.74
251 252 5.734855 TCAGTTCTTACAACAGTTGAAGC 57.265 39.130 20.56 7.39 0.00 3.86
252 253 7.011389 TGTCATCAGTTCTTACAACAGTTGAAG 59.989 37.037 20.56 16.86 0.00 3.02
253 254 6.821160 TGTCATCAGTTCTTACAACAGTTGAA 59.179 34.615 20.56 8.78 0.00 2.69
254 255 6.345298 TGTCATCAGTTCTTACAACAGTTGA 58.655 36.000 20.56 0.89 0.00 3.18
255 256 6.603237 TGTCATCAGTTCTTACAACAGTTG 57.397 37.500 12.03 12.03 0.00 3.16
256 257 8.150945 ACTATGTCATCAGTTCTTACAACAGTT 58.849 33.333 0.00 0.00 0.00 3.16
257 258 7.600375 CACTATGTCATCAGTTCTTACAACAGT 59.400 37.037 0.00 0.00 0.00 3.55
258 259 7.600375 ACACTATGTCATCAGTTCTTACAACAG 59.400 37.037 0.00 0.00 0.00 3.16
259 260 7.441836 ACACTATGTCATCAGTTCTTACAACA 58.558 34.615 0.00 0.00 0.00 3.33
260 261 7.891183 ACACTATGTCATCAGTTCTTACAAC 57.109 36.000 0.00 0.00 0.00 3.32
267 268 9.250624 GGAACTAATACACTATGTCATCAGTTC 57.749 37.037 12.55 12.55 36.00 3.01
268 269 8.758829 TGGAACTAATACACTATGTCATCAGTT 58.241 33.333 0.00 0.00 0.00 3.16
269 270 8.306313 TGGAACTAATACACTATGTCATCAGT 57.694 34.615 0.00 0.00 0.00 3.41
274 275 9.811995 GTTGTATGGAACTAATACACTATGTCA 57.188 33.333 0.00 0.00 39.58 3.58
275 276 9.811995 TGTTGTATGGAACTAATACACTATGTC 57.188 33.333 0.00 0.00 39.58 3.06
276 277 9.817809 CTGTTGTATGGAACTAATACACTATGT 57.182 33.333 0.00 0.00 39.58 2.29
277 278 8.765219 GCTGTTGTATGGAACTAATACACTATG 58.235 37.037 0.00 0.00 39.58 2.23
278 279 8.705594 AGCTGTTGTATGGAACTAATACACTAT 58.294 33.333 0.00 0.00 39.58 2.12
279 280 8.074613 AGCTGTTGTATGGAACTAATACACTA 57.925 34.615 0.00 0.00 39.58 2.74
280 281 6.947464 AGCTGTTGTATGGAACTAATACACT 58.053 36.000 0.00 0.00 39.58 3.55
281 282 7.042335 AGAGCTGTTGTATGGAACTAATACAC 58.958 38.462 0.00 0.00 39.58 2.90
282 283 7.182817 AGAGCTGTTGTATGGAACTAATACA 57.817 36.000 0.00 0.00 38.44 2.29
283 284 7.982354 AGAAGAGCTGTTGTATGGAACTAATAC 59.018 37.037 0.00 0.00 0.00 1.89
284 285 8.079211 AGAAGAGCTGTTGTATGGAACTAATA 57.921 34.615 0.00 0.00 0.00 0.98
285 286 6.951971 AGAAGAGCTGTTGTATGGAACTAAT 58.048 36.000 0.00 0.00 0.00 1.73
286 287 6.014584 TGAGAAGAGCTGTTGTATGGAACTAA 60.015 38.462 0.00 0.00 0.00 2.24
287 288 5.480422 TGAGAAGAGCTGTTGTATGGAACTA 59.520 40.000 0.00 0.00 0.00 2.24
288 289 4.284490 TGAGAAGAGCTGTTGTATGGAACT 59.716 41.667 0.00 0.00 0.00 3.01
289 290 4.569943 TGAGAAGAGCTGTTGTATGGAAC 58.430 43.478 0.00 0.00 0.00 3.62
290 291 4.528206 TCTGAGAAGAGCTGTTGTATGGAA 59.472 41.667 0.00 0.00 0.00 3.53
291 292 4.089361 TCTGAGAAGAGCTGTTGTATGGA 58.911 43.478 0.00 0.00 0.00 3.41
292 293 4.159321 TCTCTGAGAAGAGCTGTTGTATGG 59.841 45.833 0.00 0.00 35.97 2.74
293 294 5.321959 TCTCTGAGAAGAGCTGTTGTATG 57.678 43.478 0.00 0.00 35.97 2.39
294 295 7.505248 TCATATCTCTGAGAAGAGCTGTTGTAT 59.495 37.037 12.00 0.00 35.97 2.29
295 296 6.830838 TCATATCTCTGAGAAGAGCTGTTGTA 59.169 38.462 12.00 0.00 35.97 2.41
296 297 5.655974 TCATATCTCTGAGAAGAGCTGTTGT 59.344 40.000 12.00 0.00 35.97 3.32
297 298 6.146601 TCATATCTCTGAGAAGAGCTGTTG 57.853 41.667 12.00 1.76 35.97 3.33
298 299 6.982160 ATCATATCTCTGAGAAGAGCTGTT 57.018 37.500 12.00 0.00 35.97 3.16
299 300 7.725397 AGTTATCATATCTCTGAGAAGAGCTGT 59.275 37.037 12.00 0.00 35.97 4.40
300 301 8.024865 CAGTTATCATATCTCTGAGAAGAGCTG 58.975 40.741 12.00 13.74 35.97 4.24
301 302 7.725397 ACAGTTATCATATCTCTGAGAAGAGCT 59.275 37.037 12.00 7.38 35.97 4.09
302 303 7.885297 ACAGTTATCATATCTCTGAGAAGAGC 58.115 38.462 12.00 5.58 35.97 4.09
303 304 8.229811 CGACAGTTATCATATCTCTGAGAAGAG 58.770 40.741 12.00 4.53 37.28 2.85
304 305 7.934120 TCGACAGTTATCATATCTCTGAGAAGA 59.066 37.037 12.00 10.38 27.72 2.87
305 306 8.093659 TCGACAGTTATCATATCTCTGAGAAG 57.906 38.462 12.00 5.24 27.72 2.85
306 307 8.346300 GTTCGACAGTTATCATATCTCTGAGAA 58.654 37.037 12.00 1.96 0.00 2.87
307 308 7.041030 GGTTCGACAGTTATCATATCTCTGAGA 60.041 40.741 10.23 10.23 0.00 3.27
308 309 7.081349 GGTTCGACAGTTATCATATCTCTGAG 58.919 42.308 0.00 0.00 0.00 3.35
309 310 6.546034 TGGTTCGACAGTTATCATATCTCTGA 59.454 38.462 0.00 0.00 0.00 3.27
310 311 6.739112 TGGTTCGACAGTTATCATATCTCTG 58.261 40.000 0.00 0.00 0.00 3.35
311 312 6.961360 TGGTTCGACAGTTATCATATCTCT 57.039 37.500 0.00 0.00 0.00 3.10
312 313 7.148641 ACATGGTTCGACAGTTATCATATCTC 58.851 38.462 0.00 0.00 0.00 2.75
313 314 7.055667 ACATGGTTCGACAGTTATCATATCT 57.944 36.000 0.00 0.00 0.00 1.98
314 315 7.567571 CAACATGGTTCGACAGTTATCATATC 58.432 38.462 0.00 0.00 0.00 1.63
315 316 6.017934 GCAACATGGTTCGACAGTTATCATAT 60.018 38.462 0.00 0.00 0.00 1.78
316 317 5.293324 GCAACATGGTTCGACAGTTATCATA 59.707 40.000 0.00 0.00 0.00 2.15
317 318 4.094887 GCAACATGGTTCGACAGTTATCAT 59.905 41.667 0.00 0.00 0.00 2.45
318 319 3.435327 GCAACATGGTTCGACAGTTATCA 59.565 43.478 0.00 0.00 0.00 2.15
319 320 3.435327 TGCAACATGGTTCGACAGTTATC 59.565 43.478 0.00 0.00 0.00 1.75
320 321 3.407698 TGCAACATGGTTCGACAGTTAT 58.592 40.909 0.00 0.00 0.00 1.89
321 322 2.839975 TGCAACATGGTTCGACAGTTA 58.160 42.857 0.00 0.00 0.00 2.24
322 323 1.674359 TGCAACATGGTTCGACAGTT 58.326 45.000 0.00 0.00 0.00 3.16
323 324 1.603802 CTTGCAACATGGTTCGACAGT 59.396 47.619 0.00 0.00 0.00 3.55
324 325 1.872952 TCTTGCAACATGGTTCGACAG 59.127 47.619 0.00 0.00 0.00 3.51
325 326 1.960417 TCTTGCAACATGGTTCGACA 58.040 45.000 0.00 0.00 0.00 4.35
326 327 4.882671 ATATCTTGCAACATGGTTCGAC 57.117 40.909 0.00 0.00 0.00 4.20
327 328 5.895636 AAATATCTTGCAACATGGTTCGA 57.104 34.783 0.00 0.00 0.00 3.71
328 329 6.324819 AGAAAATATCTTGCAACATGGTTCG 58.675 36.000 0.00 0.00 33.39 3.95
359 360 5.416013 GTCAAACATTTCCTCCCTTAGAAGG 59.584 44.000 0.92 0.92 46.06 3.46
360 361 6.150140 CAGTCAAACATTTCCTCCCTTAGAAG 59.850 42.308 0.00 0.00 0.00 2.85
361 362 6.003950 CAGTCAAACATTTCCTCCCTTAGAA 58.996 40.000 0.00 0.00 0.00 2.10
362 363 5.309543 TCAGTCAAACATTTCCTCCCTTAGA 59.690 40.000 0.00 0.00 0.00 2.10
363 364 5.560724 TCAGTCAAACATTTCCTCCCTTAG 58.439 41.667 0.00 0.00 0.00 2.18
364 365 5.576563 TCAGTCAAACATTTCCTCCCTTA 57.423 39.130 0.00 0.00 0.00 2.69
365 366 4.453480 TCAGTCAAACATTTCCTCCCTT 57.547 40.909 0.00 0.00 0.00 3.95
366 367 4.453480 TTCAGTCAAACATTTCCTCCCT 57.547 40.909 0.00 0.00 0.00 4.20
367 368 5.529581 TTTTCAGTCAAACATTTCCTCCC 57.470 39.130 0.00 0.00 0.00 4.30
368 369 4.984785 GCTTTTCAGTCAAACATTTCCTCC 59.015 41.667 0.00 0.00 0.00 4.30
369 370 5.591099 TGCTTTTCAGTCAAACATTTCCTC 58.409 37.500 0.00 0.00 0.00 3.71
370 371 5.594926 CTGCTTTTCAGTCAAACATTTCCT 58.405 37.500 0.00 0.00 38.02 3.36
371 372 4.209911 GCTGCTTTTCAGTCAAACATTTCC 59.790 41.667 0.00 0.00 44.66 3.13
372 373 4.805192 TGCTGCTTTTCAGTCAAACATTTC 59.195 37.500 0.00 0.00 44.66 2.17
373 374 4.567959 GTGCTGCTTTTCAGTCAAACATTT 59.432 37.500 0.00 0.00 44.66 2.32
374 375 4.114794 GTGCTGCTTTTCAGTCAAACATT 58.885 39.130 0.00 0.00 44.66 2.71
375 376 3.382546 AGTGCTGCTTTTCAGTCAAACAT 59.617 39.130 0.00 0.00 44.66 2.71
376 377 2.754552 AGTGCTGCTTTTCAGTCAAACA 59.245 40.909 0.00 0.00 44.66 2.83
377 378 3.111098 CAGTGCTGCTTTTCAGTCAAAC 58.889 45.455 0.00 0.00 44.66 2.93
378 379 3.425577 CAGTGCTGCTTTTCAGTCAAA 57.574 42.857 0.00 0.00 44.66 2.69
393 394 0.882042 ACAGTACAGCAGTGCAGTGC 60.882 55.000 34.42 34.42 44.35 4.40
394 395 2.438868 TACAGTACAGCAGTGCAGTG 57.561 50.000 22.10 17.56 32.73 3.66
395 396 2.562738 TGATACAGTACAGCAGTGCAGT 59.437 45.455 19.20 18.43 34.68 4.40
396 397 3.185330 CTGATACAGTACAGCAGTGCAG 58.815 50.000 19.20 12.56 32.20 4.41
397 398 3.236632 CTGATACAGTACAGCAGTGCA 57.763 47.619 19.20 0.00 32.20 4.57
404 405 4.692625 AGTTTTGCTGCTGATACAGTACAG 59.307 41.667 0.00 0.00 39.96 2.74
405 406 4.641396 AGTTTTGCTGCTGATACAGTACA 58.359 39.130 0.00 0.00 39.96 2.90
415 416 4.818534 TTTGACTAGAGTTTTGCTGCTG 57.181 40.909 0.00 0.00 0.00 4.41
416 417 5.048434 GGAATTTGACTAGAGTTTTGCTGCT 60.048 40.000 0.00 0.00 0.00 4.24
417 418 5.048434 AGGAATTTGACTAGAGTTTTGCTGC 60.048 40.000 0.00 0.00 0.00 5.25
426 427 5.250235 TCGCAGTAGGAATTTGACTAGAG 57.750 43.478 0.00 0.00 0.00 2.43
435 436 2.304761 TCCCAGTTTCGCAGTAGGAATT 59.695 45.455 0.00 0.00 0.00 2.17
440 441 0.895530 TCCTCCCAGTTTCGCAGTAG 59.104 55.000 0.00 0.00 0.00 2.57
461 462 3.391296 ACCTATTATGGTCGAATGCTGGT 59.609 43.478 0.00 0.00 34.86 4.00
470 471 4.631131 TGAATCAGCACCTATTATGGTCG 58.369 43.478 0.00 0.00 38.45 4.79
477 478 8.139989 GCAAAATTATCTGAATCAGCACCTATT 58.860 33.333 5.18 0.00 0.00 1.73
478 479 7.286087 TGCAAAATTATCTGAATCAGCACCTAT 59.714 33.333 5.18 0.00 0.00 2.57
479 480 6.602803 TGCAAAATTATCTGAATCAGCACCTA 59.397 34.615 5.18 0.00 0.00 3.08
562 612 3.604875 AGAATTTTGGCTGCAAGATGG 57.395 42.857 0.50 0.00 34.07 3.51
597 647 7.263411 CGCACGAACAAATACTAAATATTAGCG 59.737 37.037 0.00 0.00 32.86 4.26
611 661 1.206578 CGAAGCCGCACGAACAAAT 59.793 52.632 4.38 0.00 0.00 2.32
612 662 2.629210 CGAAGCCGCACGAACAAA 59.371 55.556 4.38 0.00 0.00 2.83
651 711 7.856145 AGAATGATCAATTCCACTACTGAAC 57.144 36.000 0.00 0.00 45.10 3.18
679 739 5.945144 AATTAAGGAGATTGGCAATTGCT 57.055 34.783 28.42 10.48 41.70 3.91
685 746 4.415596 ACACCAAATTAAGGAGATTGGCA 58.584 39.130 3.42 0.00 44.90 4.92
697 758 6.596309 TGCACATCCAATTACACCAAATTA 57.404 33.333 0.00 0.00 0.00 1.40
716 777 4.035091 TCCAAATACAGCGTCATTATGCAC 59.965 41.667 0.00 0.00 40.32 4.57
768 834 1.914634 ATCGATGTCGTCAACTCTGC 58.085 50.000 0.00 0.00 40.80 4.26
803 869 7.758528 AGAATGAAGCAAATATCAAGTTTCAGC 59.241 33.333 0.00 0.00 36.26 4.26
850 934 2.472695 TCAGCCGCACAAGTTTCTAT 57.527 45.000 0.00 0.00 0.00 1.98
851 935 2.248280 TTCAGCCGCACAAGTTTCTA 57.752 45.000 0.00 0.00 0.00 2.10
856 940 0.318955 GCAATTTCAGCCGCACAAGT 60.319 50.000 0.00 0.00 0.00 3.16
906 994 1.606668 TGACCAAAAGCAATGGACGAC 59.393 47.619 9.15 0.00 40.56 4.34
909 998 2.288395 CCACTGACCAAAAGCAATGGAC 60.288 50.000 9.15 4.12 40.56 4.02
989 1091 0.448990 CCATGCCATGTCTGTTGTCG 59.551 55.000 3.63 0.00 0.00 4.35
991 1093 2.269978 GCCATGCCATGTCTGTTGT 58.730 52.632 3.63 0.00 0.00 3.32
1257 1362 0.594602 TGTTCCACTCCACGTCGTAG 59.405 55.000 0.00 0.00 0.00 3.51
1528 1664 8.402472 CAAACCAAGTAAAGTTCAGACATTACA 58.598 33.333 7.23 0.00 40.57 2.41
1531 1667 7.639113 TCAAACCAAGTAAAGTTCAGACATT 57.361 32.000 0.00 0.00 0.00 2.71
1548 1684 1.702182 TGCAAAGCTCCATCAAACCA 58.298 45.000 0.00 0.00 0.00 3.67
1550 1686 2.028748 ACCATGCAAAGCTCCATCAAAC 60.029 45.455 0.00 0.00 0.00 2.93
1787 1928 9.466497 AAACACACCAAGTATTCATATTCAGAT 57.534 29.630 0.00 0.00 0.00 2.90
1847 1989 3.433598 GCCATCTCCAGTAGCAATGGTTA 60.434 47.826 0.00 0.00 39.01 2.85
1885 2027 7.344441 ACAAAAGAAATTAAATTGAACAGCGC 58.656 30.769 0.00 0.00 0.00 5.92
1923 2065 3.159213 TGTGCATGGGAGAGAAAACAT 57.841 42.857 0.00 0.00 0.00 2.71
1954 2096 5.119125 GTCAAACATTCAATAGTTGCCTTGC 59.881 40.000 0.00 0.00 0.00 4.01
2004 2146 8.517878 CAAAATATTGGTGGATATAGGCAGAAG 58.482 37.037 0.00 0.00 32.69 2.85
2055 2197 6.746104 TTGCATAAACATGTTTCAACTTCG 57.254 33.333 26.46 9.84 34.23 3.79
2086 2228 8.979574 GGTACTTATGCATCAGAAACTACATAC 58.020 37.037 14.77 4.15 0.00 2.39
2114 2256 9.537852 TTAGAGGTCTAGGAAATACAGTTACAA 57.462 33.333 0.00 0.00 0.00 2.41
2171 2317 6.438186 AAAACATGGGTTTCCAAGAATGAT 57.562 33.333 0.00 0.00 46.20 2.45
2181 2327 5.334028 GCAAGCACAATAAAACATGGGTTTC 60.334 40.000 0.00 0.00 46.20 2.78
2195 2341 4.099266 TGAAACTAAGGTTGCAAGCACAAT 59.901 37.500 28.75 14.73 37.99 2.71
2503 2809 2.571757 GGAGACGCCGTCATCACA 59.428 61.111 20.65 0.00 34.60 3.58
2721 3202 0.307760 AGACTTTCTTTGCCAACGCG 59.692 50.000 3.53 3.53 38.08 6.01
2728 3209 4.517075 AGCTCCAACTAAGACTTTCTTTGC 59.483 41.667 0.00 0.00 37.89 3.68
2763 3244 2.727392 CCAACGCCGGTATCCTCCA 61.727 63.158 1.90 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.