Multiple sequence alignment - TraesCS3D01G084800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G084800 chr3D 100.000 2791 0 0 1 2791 42838485 42841275 0.000000e+00 5155.0
1 TraesCS3D01G084800 chr3D 89.320 721 51 12 786 1495 42886023 42885318 0.000000e+00 881.0
2 TraesCS3D01G084800 chr3D 76.650 591 106 26 2128 2712 298503488 298504052 5.840000e-77 298.0
3 TraesCS3D01G084800 chr3D 84.874 238 24 8 1585 1810 42885254 42885017 2.160000e-56 230.0
4 TraesCS3D01G084800 chr3D 90.265 113 11 0 675 787 42886172 42886060 6.230000e-32 148.0
5 TraesCS3D01G084800 chr3B 92.355 1478 52 15 675 2140 66678528 66679956 0.000000e+00 2047.0
6 TraesCS3D01G084800 chr3B 84.718 1047 91 39 786 1810 66798943 66797944 0.000000e+00 983.0
7 TraesCS3D01G084800 chr3B 92.813 487 23 5 2305 2791 66609436 66608962 0.000000e+00 695.0
8 TraesCS3D01G084800 chr3B 92.739 482 23 5 2299 2780 66679955 66680424 0.000000e+00 686.0
9 TraesCS3D01G084800 chr3B 94.253 348 18 2 1 348 734667225 734667570 5.290000e-147 531.0
10 TraesCS3D01G084800 chr3B 79.655 580 79 36 2128 2694 349851834 349851281 5.640000e-102 381.0
11 TraesCS3D01G084800 chr3B 86.957 299 8 8 1844 2140 66609710 66609441 9.710000e-80 307.0
12 TraesCS3D01G084800 chr3B 92.925 212 12 2 349 560 66678333 66678541 3.490000e-79 305.0
13 TraesCS3D01G084800 chr3B 79.800 401 51 18 830 1224 66738319 66737943 5.930000e-67 265.0
14 TraesCS3D01G084800 chr3B 80.894 246 34 7 2128 2362 370220887 370221130 6.140000e-42 182.0
15 TraesCS3D01G084800 chr3B 93.805 113 7 0 675 787 66799092 66798980 1.330000e-38 171.0
16 TraesCS3D01G084800 chr3A 85.371 1039 80 38 786 1810 54879538 54878558 0.000000e+00 1011.0
17 TraesCS3D01G084800 chr3A 88.235 561 29 16 2229 2784 54862479 54863007 1.090000e-178 636.0
18 TraesCS3D01G084800 chr3A 88.830 188 18 3 1744 1931 54871677 54871861 7.780000e-56 228.0
19 TraesCS3D01G084800 chr3A 92.105 114 8 1 675 787 54879693 54879580 2.880000e-35 159.0
20 TraesCS3D01G084800 chr3A 88.235 136 10 3 349 484 40331701 40331830 1.030000e-34 158.0
21 TraesCS3D01G084800 chr3A 89.412 85 6 3 2125 2207 622270684 622270601 1.370000e-18 104.0
22 TraesCS3D01G084800 chr3A 88.235 68 6 1 1987 2054 54871937 54872002 2.300000e-11 80.5
23 TraesCS3D01G084800 chr6D 98.563 348 5 0 1 348 460267030 460266683 1.420000e-172 616.0
24 TraesCS3D01G084800 chr6D 98.276 348 6 0 1 348 161965580 161965233 6.610000e-171 610.0
25 TraesCS3D01G084800 chr5A 95.115 348 15 2 1 348 593342403 593342058 5.260000e-152 547.0
26 TraesCS3D01G084800 chr5A 97.059 34 1 0 514 547 534071842 534071809 1.080000e-04 58.4
27 TraesCS3D01G084800 chr6B 94.167 360 18 2 1 360 29242805 29243161 1.890000e-151 545.0
28 TraesCS3D01G084800 chr6B 78.647 665 92 40 2131 2784 172638213 172637588 2.010000e-106 396.0
29 TraesCS3D01G084800 chr6B 78.535 396 58 17 1088 1480 83195485 83195856 4.650000e-58 235.0
30 TraesCS3D01G084800 chr6A 92.219 347 27 0 1 347 21612237 21611891 2.500000e-135 492.0
31 TraesCS3D01G084800 chr6A 78.589 397 58 16 1087 1480 47696919 47696547 1.290000e-58 237.0
32 TraesCS3D01G084800 chr6A 80.488 246 32 13 2343 2585 474321982 474322214 1.030000e-39 174.0
33 TraesCS3D01G084800 chr6A 81.959 194 27 5 349 540 2045364 2045177 1.030000e-34 158.0
34 TraesCS3D01G084800 chr7A 90.437 366 16 4 1 348 219848582 219848218 5.450000e-127 464.0
35 TraesCS3D01G084800 chr7A 92.308 39 2 1 504 542 356182100 356182063 1.000000e-03 54.7
36 TraesCS3D01G084800 chr4B 79.910 667 90 35 2128 2778 96289864 96289226 1.520000e-122 449.0
37 TraesCS3D01G084800 chr7B 94.737 285 13 2 64 348 403489591 403489309 2.550000e-120 442.0
38 TraesCS3D01G084800 chr7B 92.754 69 4 1 1 68 403493732 403493664 6.360000e-17 99.0
39 TraesCS3D01G084800 chr7B 88.060 67 7 1 475 540 746368346 746368280 8.290000e-11 78.7
40 TraesCS3D01G084800 chr7B 91.111 45 1 2 496 540 606643365 606643406 1.080000e-04 58.4
41 TraesCS3D01G084800 chr7D 78.603 673 86 39 2130 2785 86298851 86299482 2.610000e-105 392.0
42 TraesCS3D01G084800 chr7D 89.147 129 9 5 573 698 199898132 199898258 3.720000e-34 156.0
43 TraesCS3D01G084800 chr7D 97.222 36 1 0 514 549 553408137 553408102 8.350000e-06 62.1
44 TraesCS3D01G084800 chr5D 79.461 594 80 33 2203 2784 135230656 135230093 1.570000e-102 383.0
45 TraesCS3D01G084800 chr5D 98.291 117 2 0 563 679 435968011 435967895 3.640000e-49 206.0
46 TraesCS3D01G084800 chr5D 96.610 118 3 1 563 680 53873907 53874023 7.890000e-46 195.0
47 TraesCS3D01G084800 chr2D 87.578 322 29 11 2128 2446 324387658 324387345 2.040000e-96 363.0
48 TraesCS3D01G084800 chr2D 78.014 564 72 41 2136 2676 187142900 187143434 9.710000e-80 307.0
49 TraesCS3D01G084800 chr2D 97.122 139 4 0 213 351 608778332 608778194 4.650000e-58 235.0
50 TraesCS3D01G084800 chr2D 82.381 210 31 5 2128 2335 314046563 314046358 7.940000e-41 178.0
51 TraesCS3D01G084800 chr1A 77.348 543 82 32 2257 2786 377676373 377676887 1.640000e-72 283.0
52 TraesCS3D01G084800 chr1A 98.291 117 2 0 563 679 386782998 386782882 3.640000e-49 206.0
53 TraesCS3D01G084800 chr4A 98.319 119 2 0 563 681 32409702 32409584 2.820000e-50 209.0
54 TraesCS3D01G084800 chr4A 96.639 119 4 0 563 681 677125319 677125437 6.100000e-47 198.0
55 TraesCS3D01G084800 chr4A 95.833 120 4 1 563 682 640912585 640912703 2.840000e-45 193.0
56 TraesCS3D01G084800 chr4A 80.734 109 17 3 582 688 556382092 556382198 6.410000e-12 82.4
57 TraesCS3D01G084800 chr4A 77.165 127 24 4 416 540 728524622 728524499 4.990000e-08 69.4
58 TraesCS3D01G084800 chr1D 97.541 122 3 0 563 684 334455603 334455724 2.820000e-50 209.0
59 TraesCS3D01G084800 chr1B 98.291 117 2 0 563 679 363450903 363450787 3.640000e-49 206.0
60 TraesCS3D01G084800 chr2B 95.833 120 5 0 563 682 450766708 450766589 7.890000e-46 195.0
61 TraesCS3D01G084800 chr2B 81.579 152 21 5 390 540 24829684 24829829 4.880000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G084800 chr3D 42838485 42841275 2790 False 5155.000000 5155 100.0000 1 2791 1 chr3D.!!$F1 2790
1 TraesCS3D01G084800 chr3D 42885017 42886172 1155 True 419.666667 881 88.1530 675 1810 3 chr3D.!!$R1 1135
2 TraesCS3D01G084800 chr3D 298503488 298504052 564 False 298.000000 298 76.6500 2128 2712 1 chr3D.!!$F2 584
3 TraesCS3D01G084800 chr3B 66678333 66680424 2091 False 1012.666667 2047 92.6730 349 2780 3 chr3B.!!$F3 2431
4 TraesCS3D01G084800 chr3B 66797944 66799092 1148 True 577.000000 983 89.2615 675 1810 2 chr3B.!!$R4 1135
5 TraesCS3D01G084800 chr3B 66608962 66609710 748 True 501.000000 695 89.8850 1844 2791 2 chr3B.!!$R3 947
6 TraesCS3D01G084800 chr3B 349851281 349851834 553 True 381.000000 381 79.6550 2128 2694 1 chr3B.!!$R2 566
7 TraesCS3D01G084800 chr3A 54862479 54863007 528 False 636.000000 636 88.2350 2229 2784 1 chr3A.!!$F2 555
8 TraesCS3D01G084800 chr3A 54878558 54879693 1135 True 585.000000 1011 88.7380 675 1810 2 chr3A.!!$R2 1135
9 TraesCS3D01G084800 chr6B 172637588 172638213 625 True 396.000000 396 78.6470 2131 2784 1 chr6B.!!$R1 653
10 TraesCS3D01G084800 chr4B 96289226 96289864 638 True 449.000000 449 79.9100 2128 2778 1 chr4B.!!$R1 650
11 TraesCS3D01G084800 chr7D 86298851 86299482 631 False 392.000000 392 78.6030 2130 2785 1 chr7D.!!$F1 655
12 TraesCS3D01G084800 chr5D 135230093 135230656 563 True 383.000000 383 79.4610 2203 2784 1 chr5D.!!$R1 581
13 TraesCS3D01G084800 chr2D 187142900 187143434 534 False 307.000000 307 78.0140 2136 2676 1 chr2D.!!$F1 540
14 TraesCS3D01G084800 chr1A 377676373 377676887 514 False 283.000000 283 77.3480 2257 2786 1 chr1A.!!$F1 529

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
106 107 0.034896 AGAACGTGATTGGCCTCGTT 59.965 50.0 17.36 17.36 45.14 3.85 F
124 125 0.035036 TTTAATGTGACGGCCCGTGA 59.965 50.0 16.53 0.14 41.37 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1464 1541 0.035458 CAAGGAAGTTCCAGCGGACT 59.965 55.0 23.87 0.0 39.61 3.85 R
2009 2109 0.469705 TGCAAGTGCCATTTCCCACT 60.470 50.0 0.00 0.0 43.69 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.536761 TAGTCTGGGTTGTCAAACGG 57.463 50.000 0.00 0.00 37.15 4.44
23 24 0.179029 AGTCTGGGTTGTCAAACGGG 60.179 55.000 0.00 0.00 37.15 5.28
24 25 1.149627 TCTGGGTTGTCAAACGGGG 59.850 57.895 0.00 0.00 37.15 5.73
25 26 2.519780 TGGGTTGTCAAACGGGGC 60.520 61.111 0.00 0.00 37.15 5.80
26 27 3.299977 GGGTTGTCAAACGGGGCC 61.300 66.667 0.00 0.00 37.15 5.80
27 28 2.203437 GGTTGTCAAACGGGGCCT 60.203 61.111 0.84 0.00 37.15 5.19
28 29 1.073548 GGTTGTCAAACGGGGCCTA 59.926 57.895 0.84 0.00 37.15 3.93
29 30 0.537828 GGTTGTCAAACGGGGCCTAA 60.538 55.000 0.84 0.00 37.15 2.69
30 31 0.879090 GTTGTCAAACGGGGCCTAAG 59.121 55.000 0.84 0.00 0.00 2.18
31 32 0.475044 TTGTCAAACGGGGCCTAAGT 59.525 50.000 0.84 0.00 0.00 2.24
32 33 0.250553 TGTCAAACGGGGCCTAAGTG 60.251 55.000 0.84 0.00 0.00 3.16
33 34 0.035739 GTCAAACGGGGCCTAAGTGA 59.964 55.000 0.84 0.00 0.00 3.41
34 35 0.988832 TCAAACGGGGCCTAAGTGAT 59.011 50.000 0.84 0.00 0.00 3.06
35 36 1.094785 CAAACGGGGCCTAAGTGATG 58.905 55.000 0.84 1.77 0.00 3.07
36 37 0.988832 AAACGGGGCCTAAGTGATGA 59.011 50.000 0.84 0.00 0.00 2.92
37 38 0.541863 AACGGGGCCTAAGTGATGAG 59.458 55.000 0.84 0.00 0.00 2.90
38 39 0.617820 ACGGGGCCTAAGTGATGAGT 60.618 55.000 0.84 0.00 0.00 3.41
39 40 0.541863 CGGGGCCTAAGTGATGAGTT 59.458 55.000 0.84 0.00 0.00 3.01
40 41 1.065418 CGGGGCCTAAGTGATGAGTTT 60.065 52.381 0.84 0.00 0.00 2.66
41 42 2.169769 CGGGGCCTAAGTGATGAGTTTA 59.830 50.000 0.84 0.00 0.00 2.01
42 43 3.181454 CGGGGCCTAAGTGATGAGTTTAT 60.181 47.826 0.84 0.00 0.00 1.40
43 44 4.137543 GGGGCCTAAGTGATGAGTTTATG 58.862 47.826 0.84 0.00 0.00 1.90
44 45 4.385310 GGGGCCTAAGTGATGAGTTTATGT 60.385 45.833 0.84 0.00 0.00 2.29
45 46 5.193679 GGGCCTAAGTGATGAGTTTATGTT 58.806 41.667 0.84 0.00 0.00 2.71
46 47 5.652452 GGGCCTAAGTGATGAGTTTATGTTT 59.348 40.000 0.84 0.00 0.00 2.83
47 48 6.404734 GGGCCTAAGTGATGAGTTTATGTTTG 60.405 42.308 0.84 0.00 0.00 2.93
48 49 6.374333 GGCCTAAGTGATGAGTTTATGTTTGA 59.626 38.462 0.00 0.00 0.00 2.69
49 50 7.244192 GCCTAAGTGATGAGTTTATGTTTGAC 58.756 38.462 0.00 0.00 0.00 3.18
50 51 7.094805 GCCTAAGTGATGAGTTTATGTTTGACA 60.095 37.037 0.00 0.00 0.00 3.58
51 52 8.950210 CCTAAGTGATGAGTTTATGTTTGACAT 58.050 33.333 0.00 0.00 42.35 3.06
52 53 9.764870 CTAAGTGATGAGTTTATGTTTGACATG 57.235 33.333 3.92 0.00 39.53 3.21
53 54 6.615088 AGTGATGAGTTTATGTTTGACATGC 58.385 36.000 3.92 0.00 39.53 4.06
54 55 6.207221 AGTGATGAGTTTATGTTTGACATGCA 59.793 34.615 3.92 0.00 39.53 3.96
55 56 6.862608 GTGATGAGTTTATGTTTGACATGCAA 59.137 34.615 3.92 0.00 39.53 4.08
56 57 6.862608 TGATGAGTTTATGTTTGACATGCAAC 59.137 34.615 3.92 6.78 39.53 4.17
57 58 6.389830 TGAGTTTATGTTTGACATGCAACT 57.610 33.333 14.96 14.96 41.83 3.16
58 59 6.804677 TGAGTTTATGTTTGACATGCAACTT 58.195 32.000 15.65 0.00 40.50 2.66
59 60 6.696583 TGAGTTTATGTTTGACATGCAACTTG 59.303 34.615 15.65 0.00 40.50 3.16
60 61 6.572519 AGTTTATGTTTGACATGCAACTTGT 58.427 32.000 11.60 0.00 38.89 3.16
61 62 7.711846 AGTTTATGTTTGACATGCAACTTGTA 58.288 30.769 11.60 0.00 38.89 2.41
62 63 7.862372 AGTTTATGTTTGACATGCAACTTGTAG 59.138 33.333 11.60 0.00 38.89 2.74
63 64 5.772825 ATGTTTGACATGCAACTTGTAGT 57.227 34.783 0.00 0.00 37.45 2.73
64 65 5.574891 TGTTTGACATGCAACTTGTAGTT 57.425 34.783 0.00 0.00 39.39 2.24
65 66 5.960113 TGTTTGACATGCAACTTGTAGTTT 58.040 33.333 0.00 0.00 36.03 2.66
66 67 5.804473 TGTTTGACATGCAACTTGTAGTTTG 59.196 36.000 0.00 0.00 36.03 2.93
67 68 5.574891 TTGACATGCAACTTGTAGTTTGT 57.425 34.783 0.00 0.00 36.03 2.83
68 69 6.685527 TTGACATGCAACTTGTAGTTTGTA 57.314 33.333 0.00 0.00 36.03 2.41
69 70 6.299023 TGACATGCAACTTGTAGTTTGTAG 57.701 37.500 0.00 0.00 36.03 2.74
70 71 5.238432 TGACATGCAACTTGTAGTTTGTAGG 59.762 40.000 0.00 0.00 36.03 3.18
71 72 5.373222 ACATGCAACTTGTAGTTTGTAGGA 58.627 37.500 0.00 0.00 36.03 2.94
72 73 5.470098 ACATGCAACTTGTAGTTTGTAGGAG 59.530 40.000 0.00 0.00 36.03 3.69
73 74 5.284861 TGCAACTTGTAGTTTGTAGGAGA 57.715 39.130 0.00 0.00 36.03 3.71
74 75 5.676552 TGCAACTTGTAGTTTGTAGGAGAA 58.323 37.500 0.00 0.00 36.03 2.87
75 76 6.116806 TGCAACTTGTAGTTTGTAGGAGAAA 58.883 36.000 0.00 0.00 36.03 2.52
76 77 6.260050 TGCAACTTGTAGTTTGTAGGAGAAAG 59.740 38.462 0.00 0.00 36.03 2.62
77 78 6.659776 CAACTTGTAGTTTGTAGGAGAAAGC 58.340 40.000 0.00 0.00 36.03 3.51
78 79 6.176014 ACTTGTAGTTTGTAGGAGAAAGCT 57.824 37.500 0.00 0.00 0.00 3.74
79 80 6.592870 ACTTGTAGTTTGTAGGAGAAAGCTT 58.407 36.000 0.00 0.00 0.00 3.74
80 81 6.706716 ACTTGTAGTTTGTAGGAGAAAGCTTC 59.293 38.462 0.00 0.00 0.00 3.86
81 82 6.420913 TGTAGTTTGTAGGAGAAAGCTTCT 57.579 37.500 0.00 0.00 44.21 2.85
82 83 6.223852 TGTAGTTTGTAGGAGAAAGCTTCTG 58.776 40.000 0.00 0.00 40.87 3.02
83 84 4.646572 AGTTTGTAGGAGAAAGCTTCTGG 58.353 43.478 0.00 0.00 40.87 3.86
84 85 2.770164 TGTAGGAGAAAGCTTCTGGC 57.230 50.000 0.00 0.00 40.87 4.85
93 94 4.683432 GCTTCTGGCTCAGAACGT 57.317 55.556 12.03 0.00 44.27 3.99
94 95 2.157421 GCTTCTGGCTCAGAACGTG 58.843 57.895 12.03 6.11 44.27 4.49
95 96 0.319900 GCTTCTGGCTCAGAACGTGA 60.320 55.000 12.03 0.00 44.27 4.35
96 97 1.674221 GCTTCTGGCTCAGAACGTGAT 60.674 52.381 12.03 0.00 44.27 3.06
97 98 2.693069 CTTCTGGCTCAGAACGTGATT 58.307 47.619 12.03 0.00 44.27 2.57
98 99 2.084610 TCTGGCTCAGAACGTGATTG 57.915 50.000 2.78 0.00 37.57 2.67
99 100 1.081892 CTGGCTCAGAACGTGATTGG 58.918 55.000 0.00 0.00 33.51 3.16
100 101 0.955428 TGGCTCAGAACGTGATTGGC 60.955 55.000 0.00 0.00 33.51 4.52
101 102 1.648467 GGCTCAGAACGTGATTGGCC 61.648 60.000 0.00 0.00 36.99 5.36
102 103 0.674895 GCTCAGAACGTGATTGGCCT 60.675 55.000 3.32 0.00 33.51 5.19
103 104 1.363744 CTCAGAACGTGATTGGCCTC 58.636 55.000 3.32 0.00 33.51 4.70
104 105 0.389817 TCAGAACGTGATTGGCCTCG 60.390 55.000 3.32 3.84 0.00 4.63
105 106 0.670546 CAGAACGTGATTGGCCTCGT 60.671 55.000 3.32 4.50 37.79 4.18
106 107 0.034896 AGAACGTGATTGGCCTCGTT 59.965 50.000 17.36 17.36 45.14 3.85
107 108 0.872388 GAACGTGATTGGCCTCGTTT 59.128 50.000 17.99 7.81 43.38 3.60
108 109 2.070783 GAACGTGATTGGCCTCGTTTA 58.929 47.619 17.99 0.00 43.38 2.01
109 110 2.172851 ACGTGATTGGCCTCGTTTAA 57.827 45.000 3.32 0.00 33.23 1.52
110 111 2.706890 ACGTGATTGGCCTCGTTTAAT 58.293 42.857 3.32 0.00 33.23 1.40
111 112 2.418628 ACGTGATTGGCCTCGTTTAATG 59.581 45.455 3.32 0.00 33.23 1.90
112 113 2.418628 CGTGATTGGCCTCGTTTAATGT 59.581 45.455 3.32 0.00 0.00 2.71
113 114 3.727673 CGTGATTGGCCTCGTTTAATGTG 60.728 47.826 3.32 0.00 0.00 3.21
114 115 3.438781 GTGATTGGCCTCGTTTAATGTGA 59.561 43.478 3.32 0.00 0.00 3.58
115 116 3.438781 TGATTGGCCTCGTTTAATGTGAC 59.561 43.478 3.32 0.00 0.00 3.67
116 117 1.434555 TGGCCTCGTTTAATGTGACG 58.565 50.000 3.32 0.00 40.43 4.35
117 118 0.725117 GGCCTCGTTTAATGTGACGG 59.275 55.000 0.00 0.00 39.59 4.79
118 119 0.096454 GCCTCGTTTAATGTGACGGC 59.904 55.000 0.00 0.00 39.59 5.68
119 120 0.725117 CCTCGTTTAATGTGACGGCC 59.275 55.000 0.00 0.00 39.59 6.13
120 121 0.725117 CTCGTTTAATGTGACGGCCC 59.275 55.000 0.00 0.00 39.59 5.80
121 122 1.015085 TCGTTTAATGTGACGGCCCG 61.015 55.000 0.00 0.00 39.59 6.13
122 123 1.293267 CGTTTAATGTGACGGCCCGT 61.293 55.000 9.43 9.43 45.10 5.28
123 124 0.167251 GTTTAATGTGACGGCCCGTG 59.833 55.000 16.53 0.00 41.37 4.94
124 125 0.035036 TTTAATGTGACGGCCCGTGA 59.965 50.000 16.53 0.14 41.37 4.35
125 126 0.671163 TTAATGTGACGGCCCGTGAC 60.671 55.000 19.34 19.34 43.58 3.67
126 127 1.537814 TAATGTGACGGCCCGTGACT 61.538 55.000 25.63 10.01 43.65 3.41
127 128 1.537814 AATGTGACGGCCCGTGACTA 61.538 55.000 25.63 13.11 43.65 2.59
128 129 1.327690 ATGTGACGGCCCGTGACTAT 61.328 55.000 25.63 14.70 43.65 2.12
129 130 0.680601 TGTGACGGCCCGTGACTATA 60.681 55.000 25.63 3.74 43.65 1.31
130 131 0.672342 GTGACGGCCCGTGACTATAT 59.328 55.000 18.90 0.00 40.47 0.86
131 132 0.671796 TGACGGCCCGTGACTATATG 59.328 55.000 16.53 0.00 41.37 1.78
132 133 0.038526 GACGGCCCGTGACTATATGG 60.039 60.000 16.53 0.00 41.37 2.74
138 139 2.991434 CCGTGACTATATGGGAGTCG 57.009 55.000 0.80 0.00 45.29 4.18
139 140 1.540267 CCGTGACTATATGGGAGTCGG 59.460 57.143 0.80 0.00 45.29 4.79
140 141 1.068472 CGTGACTATATGGGAGTCGGC 60.068 57.143 0.80 0.00 45.29 5.54
141 142 2.240279 GTGACTATATGGGAGTCGGCT 58.760 52.381 0.00 0.00 45.29 5.52
142 143 2.229302 GTGACTATATGGGAGTCGGCTC 59.771 54.545 8.99 8.99 45.29 4.70
143 144 2.158519 TGACTATATGGGAGTCGGCTCA 60.159 50.000 20.37 0.00 45.29 4.26
144 145 2.490115 GACTATATGGGAGTCGGCTCAG 59.510 54.545 20.37 8.82 43.37 3.35
145 146 2.108425 ACTATATGGGAGTCGGCTCAGA 59.892 50.000 20.37 4.34 43.37 3.27
146 147 2.088104 ATATGGGAGTCGGCTCAGAA 57.912 50.000 20.37 3.50 43.37 3.02
147 148 1.112113 TATGGGAGTCGGCTCAGAAC 58.888 55.000 20.37 6.35 43.37 3.01
148 149 1.949847 ATGGGAGTCGGCTCAGAACG 61.950 60.000 20.37 0.00 43.37 3.95
149 150 2.637383 GGGAGTCGGCTCAGAACGT 61.637 63.158 20.37 0.00 43.37 3.99
150 151 1.444553 GGAGTCGGCTCAGAACGTG 60.445 63.158 20.37 0.00 43.37 4.49
151 152 1.579932 GAGTCGGCTCAGAACGTGA 59.420 57.895 13.26 0.00 41.29 4.35
163 164 4.844884 TCAGAACGTGAGAGGATTCTAGA 58.155 43.478 0.00 0.00 32.53 2.43
164 165 4.636648 TCAGAACGTGAGAGGATTCTAGAC 59.363 45.833 0.00 0.00 32.53 2.59
165 166 3.949113 AGAACGTGAGAGGATTCTAGACC 59.051 47.826 0.00 0.00 32.53 3.85
166 167 2.290464 ACGTGAGAGGATTCTAGACCG 58.710 52.381 0.00 0.00 32.53 4.79
167 168 1.604755 CGTGAGAGGATTCTAGACCGG 59.395 57.143 0.00 0.00 32.53 5.28
168 169 2.745482 CGTGAGAGGATTCTAGACCGGA 60.745 54.545 9.46 0.00 32.53 5.14
169 170 3.492337 GTGAGAGGATTCTAGACCGGAT 58.508 50.000 9.46 0.00 32.53 4.18
170 171 3.254657 GTGAGAGGATTCTAGACCGGATG 59.745 52.174 9.46 0.00 32.53 3.51
171 172 3.117474 TGAGAGGATTCTAGACCGGATGT 60.117 47.826 9.46 0.00 32.53 3.06
172 173 4.104261 TGAGAGGATTCTAGACCGGATGTA 59.896 45.833 9.46 0.00 32.53 2.29
173 174 4.658063 AGAGGATTCTAGACCGGATGTAG 58.342 47.826 9.46 5.77 0.00 2.74
174 175 3.158676 AGGATTCTAGACCGGATGTAGC 58.841 50.000 9.46 0.00 0.00 3.58
175 176 3.158676 GGATTCTAGACCGGATGTAGCT 58.841 50.000 9.46 0.00 0.00 3.32
176 177 3.057174 GGATTCTAGACCGGATGTAGCTG 60.057 52.174 9.46 0.00 0.00 4.24
177 178 2.730934 TCTAGACCGGATGTAGCTGT 57.269 50.000 9.46 0.00 0.00 4.40
178 179 3.851458 TCTAGACCGGATGTAGCTGTA 57.149 47.619 9.46 0.00 0.00 2.74
179 180 4.160642 TCTAGACCGGATGTAGCTGTAA 57.839 45.455 9.46 0.00 0.00 2.41
180 181 3.881688 TCTAGACCGGATGTAGCTGTAAC 59.118 47.826 9.46 0.00 0.00 2.50
181 182 1.404391 AGACCGGATGTAGCTGTAACG 59.596 52.381 9.46 0.00 0.00 3.18
182 183 0.458669 ACCGGATGTAGCTGTAACGG 59.541 55.000 9.46 14.38 44.86 4.44
183 184 0.874607 CCGGATGTAGCTGTAACGGC 60.875 60.000 0.00 0.00 35.73 5.68
184 185 0.179121 CGGATGTAGCTGTAACGGCA 60.179 55.000 0.00 0.00 38.37 5.69
185 186 1.737696 CGGATGTAGCTGTAACGGCAA 60.738 52.381 0.00 0.00 38.37 4.52
186 187 1.933853 GGATGTAGCTGTAACGGCAAG 59.066 52.381 0.00 0.00 38.37 4.01
187 188 1.933853 GATGTAGCTGTAACGGCAAGG 59.066 52.381 0.00 0.00 38.37 3.61
188 189 0.036765 TGTAGCTGTAACGGCAAGGG 60.037 55.000 0.00 0.00 38.37 3.95
189 190 1.078708 TAGCTGTAACGGCAAGGGC 60.079 57.895 0.00 0.00 38.37 5.19
190 191 1.550130 TAGCTGTAACGGCAAGGGCT 61.550 55.000 0.00 0.00 38.37 5.19
206 207 6.585695 CAAGGGCTGCAATAATTATCTGAT 57.414 37.500 0.50 0.00 0.00 2.90
207 208 6.618811 CAAGGGCTGCAATAATTATCTGATC 58.381 40.000 0.50 0.00 0.00 2.92
208 209 4.940046 AGGGCTGCAATAATTATCTGATCG 59.060 41.667 0.50 0.00 0.00 3.69
209 210 4.095483 GGGCTGCAATAATTATCTGATCGG 59.905 45.833 0.50 0.00 0.00 4.18
210 211 4.437930 GGCTGCAATAATTATCTGATCGGC 60.438 45.833 0.50 3.70 0.00 5.54
211 212 4.726021 GCTGCAATAATTATCTGATCGGCG 60.726 45.833 0.00 0.00 0.00 6.46
212 213 4.314961 TGCAATAATTATCTGATCGGCGT 58.685 39.130 6.85 0.00 0.00 5.68
213 214 4.152223 TGCAATAATTATCTGATCGGCGTG 59.848 41.667 6.85 0.00 0.00 5.34
214 215 4.436050 GCAATAATTATCTGATCGGCGTGG 60.436 45.833 6.85 0.00 0.00 4.94
215 216 2.169832 AATTATCTGATCGGCGTGGG 57.830 50.000 6.85 0.00 0.00 4.61
216 217 0.320771 ATTATCTGATCGGCGTGGGC 60.321 55.000 6.85 0.00 38.90 5.36
226 227 3.365535 GCGTGGGCCATTTGAACT 58.634 55.556 10.70 0.00 0.00 3.01
227 228 1.080569 GCGTGGGCCATTTGAACTG 60.081 57.895 10.70 0.00 0.00 3.16
228 229 1.805428 GCGTGGGCCATTTGAACTGT 61.805 55.000 10.70 0.00 0.00 3.55
229 230 0.039256 CGTGGGCCATTTGAACTGTG 60.039 55.000 10.70 0.00 0.00 3.66
230 231 0.319813 GTGGGCCATTTGAACTGTGC 60.320 55.000 10.70 0.00 0.00 4.57
231 232 0.469705 TGGGCCATTTGAACTGTGCT 60.470 50.000 0.00 0.00 0.00 4.40
232 233 0.681175 GGGCCATTTGAACTGTGCTT 59.319 50.000 4.39 0.00 0.00 3.91
233 234 1.892474 GGGCCATTTGAACTGTGCTTA 59.108 47.619 4.39 0.00 0.00 3.09
234 235 2.497273 GGGCCATTTGAACTGTGCTTAT 59.503 45.455 4.39 0.00 0.00 1.73
235 236 3.055891 GGGCCATTTGAACTGTGCTTATT 60.056 43.478 4.39 0.00 0.00 1.40
236 237 4.159506 GGGCCATTTGAACTGTGCTTATTA 59.840 41.667 4.39 0.00 0.00 0.98
237 238 5.337169 GGGCCATTTGAACTGTGCTTATTAA 60.337 40.000 4.39 0.00 0.00 1.40
238 239 6.340522 GGCCATTTGAACTGTGCTTATTAAT 58.659 36.000 0.00 0.00 0.00 1.40
239 240 7.417342 GGGCCATTTGAACTGTGCTTATTAATA 60.417 37.037 4.39 0.00 0.00 0.98
240 241 8.143835 GGCCATTTGAACTGTGCTTATTAATAT 58.856 33.333 0.00 0.00 0.00 1.28
247 248 9.261180 TGAACTGTGCTTATTAATATACTCTGC 57.739 33.333 0.00 0.00 0.00 4.26
248 249 8.608844 AACTGTGCTTATTAATATACTCTGCC 57.391 34.615 0.00 0.00 0.00 4.85
249 250 7.735917 ACTGTGCTTATTAATATACTCTGCCA 58.264 34.615 0.00 0.00 0.00 4.92
250 251 7.657761 ACTGTGCTTATTAATATACTCTGCCAC 59.342 37.037 0.00 0.00 0.00 5.01
251 252 7.505258 TGTGCTTATTAATATACTCTGCCACA 58.495 34.615 0.00 0.00 0.00 4.17
252 253 8.156820 TGTGCTTATTAATATACTCTGCCACAT 58.843 33.333 0.00 0.00 0.00 3.21
253 254 9.653287 GTGCTTATTAATATACTCTGCCACATA 57.347 33.333 0.00 0.00 0.00 2.29
254 255 9.653287 TGCTTATTAATATACTCTGCCACATAC 57.347 33.333 0.00 0.00 0.00 2.39
255 256 9.653287 GCTTATTAATATACTCTGCCACATACA 57.347 33.333 0.00 0.00 0.00 2.29
258 259 7.905604 TTAATATACTCTGCCACATACATGC 57.094 36.000 0.00 0.00 0.00 4.06
259 260 2.223537 TACTCTGCCACATACATGCG 57.776 50.000 0.00 0.00 0.00 4.73
260 261 0.462581 ACTCTGCCACATACATGCGG 60.463 55.000 0.00 0.00 33.20 5.69
261 262 0.179076 CTCTGCCACATACATGCGGA 60.179 55.000 0.37 0.00 38.03 5.54
262 263 0.251634 TCTGCCACATACATGCGGAA 59.748 50.000 0.37 0.00 37.45 4.30
263 264 1.093972 CTGCCACATACATGCGGAAA 58.906 50.000 0.37 0.00 31.71 3.13
264 265 1.677576 CTGCCACATACATGCGGAAAT 59.322 47.619 0.37 0.00 31.71 2.17
265 266 2.877786 CTGCCACATACATGCGGAAATA 59.122 45.455 0.37 0.00 31.71 1.40
266 267 2.616376 TGCCACATACATGCGGAAATAC 59.384 45.455 0.37 0.00 31.71 1.89
267 268 2.349438 GCCACATACATGCGGAAATACG 60.349 50.000 0.37 0.00 31.71 3.06
268 269 3.127589 CCACATACATGCGGAAATACGA 58.872 45.455 0.00 0.00 31.71 3.43
269 270 3.184379 CCACATACATGCGGAAATACGAG 59.816 47.826 0.00 0.00 31.71 4.18
270 271 3.802139 CACATACATGCGGAAATACGAGT 59.198 43.478 0.00 0.00 35.47 4.18
271 272 3.802139 ACATACATGCGGAAATACGAGTG 59.198 43.478 0.00 0.00 35.47 3.51
272 273 1.651987 ACATGCGGAAATACGAGTGG 58.348 50.000 0.00 0.00 35.47 4.00
273 274 0.304705 CATGCGGAAATACGAGTGGC 59.695 55.000 0.00 0.00 35.47 5.01
274 275 0.107897 ATGCGGAAATACGAGTGGCA 60.108 50.000 0.00 0.00 35.47 4.92
275 276 0.739462 TGCGGAAATACGAGTGGCAG 60.739 55.000 0.00 0.00 35.47 4.85
276 277 0.739813 GCGGAAATACGAGTGGCAGT 60.740 55.000 0.00 0.00 35.47 4.40
277 278 0.999406 CGGAAATACGAGTGGCAGTG 59.001 55.000 0.00 0.00 35.47 3.66
278 279 1.671850 CGGAAATACGAGTGGCAGTGT 60.672 52.381 0.00 0.98 35.47 3.55
279 280 1.732259 GGAAATACGAGTGGCAGTGTG 59.268 52.381 0.00 0.00 0.00 3.82
280 281 2.611971 GGAAATACGAGTGGCAGTGTGA 60.612 50.000 0.00 0.00 0.00 3.58
281 282 2.831685 AATACGAGTGGCAGTGTGAA 57.168 45.000 0.00 0.00 0.00 3.18
282 283 3.334583 AATACGAGTGGCAGTGTGAAT 57.665 42.857 0.00 0.00 0.00 2.57
283 284 2.363788 TACGAGTGGCAGTGTGAATC 57.636 50.000 0.00 0.00 0.00 2.52
284 285 0.681733 ACGAGTGGCAGTGTGAATCT 59.318 50.000 0.00 0.00 0.00 2.40
285 286 1.337260 ACGAGTGGCAGTGTGAATCTC 60.337 52.381 0.00 0.00 0.00 2.75
286 287 1.337167 CGAGTGGCAGTGTGAATCTCA 60.337 52.381 0.00 0.00 0.00 3.27
287 288 2.344950 GAGTGGCAGTGTGAATCTCAG 58.655 52.381 0.00 0.00 0.00 3.35
288 289 1.973515 AGTGGCAGTGTGAATCTCAGA 59.026 47.619 0.00 0.00 0.00 3.27
289 290 2.028294 AGTGGCAGTGTGAATCTCAGAG 60.028 50.000 0.00 0.00 0.00 3.35
290 291 1.277273 TGGCAGTGTGAATCTCAGAGG 59.723 52.381 0.00 0.00 0.00 3.69
291 292 1.406614 GGCAGTGTGAATCTCAGAGGG 60.407 57.143 0.00 0.00 0.00 4.30
292 293 1.552337 GCAGTGTGAATCTCAGAGGGA 59.448 52.381 0.00 0.00 0.00 4.20
293 294 2.027745 GCAGTGTGAATCTCAGAGGGAA 60.028 50.000 0.00 0.00 0.00 3.97
294 295 3.594134 CAGTGTGAATCTCAGAGGGAAC 58.406 50.000 0.00 0.00 0.00 3.62
295 296 2.232452 AGTGTGAATCTCAGAGGGAACG 59.768 50.000 0.00 0.00 0.00 3.95
296 297 2.231478 GTGTGAATCTCAGAGGGAACGA 59.769 50.000 0.00 0.00 0.00 3.85
297 298 2.897326 TGTGAATCTCAGAGGGAACGAA 59.103 45.455 0.00 0.00 0.00 3.85
298 299 3.254892 GTGAATCTCAGAGGGAACGAAC 58.745 50.000 0.00 0.00 0.00 3.95
299 300 2.897326 TGAATCTCAGAGGGAACGAACA 59.103 45.455 0.00 0.00 0.00 3.18
300 301 3.515502 TGAATCTCAGAGGGAACGAACAT 59.484 43.478 0.00 0.00 0.00 2.71
301 302 3.810310 ATCTCAGAGGGAACGAACATC 57.190 47.619 0.00 0.00 0.00 3.06
302 303 2.808919 TCTCAGAGGGAACGAACATCT 58.191 47.619 0.00 0.00 0.00 2.90
303 304 2.755655 TCTCAGAGGGAACGAACATCTC 59.244 50.000 0.00 0.00 0.00 2.75
304 305 2.493675 CTCAGAGGGAACGAACATCTCA 59.506 50.000 0.00 0.00 0.00 3.27
305 306 2.493675 TCAGAGGGAACGAACATCTCAG 59.506 50.000 0.00 0.00 0.00 3.35
306 307 2.493675 CAGAGGGAACGAACATCTCAGA 59.506 50.000 0.00 0.00 0.00 3.27
307 308 3.131933 CAGAGGGAACGAACATCTCAGAT 59.868 47.826 0.00 0.00 0.00 2.90
308 309 4.339530 CAGAGGGAACGAACATCTCAGATA 59.660 45.833 0.00 0.00 0.00 1.98
309 310 4.956700 AGAGGGAACGAACATCTCAGATAA 59.043 41.667 0.00 0.00 0.00 1.75
310 311 5.012328 AGGGAACGAACATCTCAGATAAC 57.988 43.478 0.00 0.00 0.00 1.89
311 312 4.466370 AGGGAACGAACATCTCAGATAACA 59.534 41.667 0.00 0.00 0.00 2.41
312 313 5.129485 AGGGAACGAACATCTCAGATAACAT 59.871 40.000 0.00 0.00 0.00 2.71
313 314 5.235186 GGGAACGAACATCTCAGATAACATG 59.765 44.000 0.00 0.00 0.00 3.21
314 315 6.042777 GGAACGAACATCTCAGATAACATGA 58.957 40.000 0.00 0.00 0.00 3.07
315 316 6.535150 GGAACGAACATCTCAGATAACATGAA 59.465 38.462 0.00 0.00 0.00 2.57
316 317 6.893958 ACGAACATCTCAGATAACATGAAC 57.106 37.500 0.00 0.00 0.00 3.18
317 318 6.398095 ACGAACATCTCAGATAACATGAACA 58.602 36.000 0.00 0.00 0.00 3.18
318 319 7.044181 ACGAACATCTCAGATAACATGAACAT 58.956 34.615 0.00 0.00 0.00 2.71
319 320 7.223582 ACGAACATCTCAGATAACATGAACATC 59.776 37.037 0.00 0.00 0.00 3.06
320 321 7.437565 CGAACATCTCAGATAACATGAACATCT 59.562 37.037 0.00 1.09 0.00 2.90
321 322 8.434733 AACATCTCAGATAACATGAACATCTG 57.565 34.615 20.35 20.35 44.58 2.90
322 323 7.563020 ACATCTCAGATAACATGAACATCTGT 58.437 34.615 22.98 10.91 43.94 3.41
323 324 7.494952 ACATCTCAGATAACATGAACATCTGTG 59.505 37.037 22.98 21.40 43.94 3.66
324 325 5.814188 TCTCAGATAACATGAACATCTGTGC 59.186 40.000 22.98 0.00 43.94 4.57
325 326 5.737860 TCAGATAACATGAACATCTGTGCT 58.262 37.500 22.98 0.00 43.94 4.40
326 327 5.814188 TCAGATAACATGAACATCTGTGCTC 59.186 40.000 22.98 0.00 43.94 4.26
327 328 4.807834 AGATAACATGAACATCTGTGCTCG 59.192 41.667 0.00 0.00 0.00 5.03
328 329 1.730501 ACATGAACATCTGTGCTCGG 58.269 50.000 0.00 0.00 0.00 4.63
329 330 1.012086 CATGAACATCTGTGCTCGGG 58.988 55.000 0.00 0.00 0.00 5.14
330 331 0.904649 ATGAACATCTGTGCTCGGGA 59.095 50.000 0.00 0.00 0.00 5.14
331 332 0.247460 TGAACATCTGTGCTCGGGAG 59.753 55.000 0.00 0.00 0.00 4.30
344 345 3.393089 CTCGGGAGCATAATAGCACTT 57.607 47.619 0.00 0.00 36.85 3.16
345 346 3.733337 CTCGGGAGCATAATAGCACTTT 58.267 45.455 0.00 0.00 36.85 2.66
346 347 3.728845 TCGGGAGCATAATAGCACTTTC 58.271 45.455 0.00 0.00 36.85 2.62
347 348 2.476619 CGGGAGCATAATAGCACTTTCG 59.523 50.000 0.00 0.00 36.85 3.46
348 349 3.728845 GGGAGCATAATAGCACTTTCGA 58.271 45.455 0.00 0.00 36.85 3.71
349 350 3.743396 GGGAGCATAATAGCACTTTCGAG 59.257 47.826 0.00 0.00 36.85 4.04
350 351 4.501571 GGGAGCATAATAGCACTTTCGAGA 60.502 45.833 0.00 0.00 36.85 4.04
351 352 5.233988 GGAGCATAATAGCACTTTCGAGAT 58.766 41.667 0.00 0.00 36.85 2.75
352 353 5.119898 GGAGCATAATAGCACTTTCGAGATG 59.880 44.000 0.00 0.00 36.85 2.90
353 354 5.847304 AGCATAATAGCACTTTCGAGATGA 58.153 37.500 0.00 0.00 36.85 2.92
374 375 8.204160 AGATGAAGATGGATTATGTTGACGTTA 58.796 33.333 0.00 0.00 0.00 3.18
392 393 4.688413 ACGTTAAAAAGTAATCCGCCGTTA 59.312 37.500 0.00 0.00 0.00 3.18
418 419 6.448369 AATAATCCATCGATAAAGGACCCA 57.552 37.500 5.17 0.00 33.57 4.51
430 431 7.177921 TCGATAAAGGACCCAAGACGATATTAT 59.822 37.037 0.00 0.00 0.00 1.28
436 437 6.059484 GGACCCAAGACGATATTATTGGAAA 58.941 40.000 4.42 0.00 44.04 3.13
456 457 1.072173 AGGGCCAAAATTTCACCAAGC 59.928 47.619 6.18 0.00 0.00 4.01
565 566 9.506018 TGTAACTAAAAATTTCAGTAGGTACCC 57.494 33.333 19.19 0.00 36.38 3.69
566 567 9.506018 GTAACTAAAAATTTCAGTAGGTACCCA 57.494 33.333 8.74 0.00 32.78 4.51
567 568 8.999905 AACTAAAAATTTCAGTAGGTACCCAA 57.000 30.769 8.74 0.00 0.00 4.12
568 569 9.596308 AACTAAAAATTTCAGTAGGTACCCAAT 57.404 29.630 8.74 0.00 0.00 3.16
569 570 9.596308 ACTAAAAATTTCAGTAGGTACCCAATT 57.404 29.630 8.74 1.55 0.00 2.32
574 575 6.645884 TTTCAGTAGGTACCCAATTATGGT 57.354 37.500 8.74 4.42 46.01 3.55
575 576 5.881923 TCAGTAGGTACCCAATTATGGTC 57.118 43.478 8.74 0.00 46.01 4.02
576 577 5.535029 TCAGTAGGTACCCAATTATGGTCT 58.465 41.667 8.74 0.00 46.01 3.85
577 578 5.365605 TCAGTAGGTACCCAATTATGGTCTG 59.634 44.000 8.74 0.00 46.01 3.51
578 579 5.365605 CAGTAGGTACCCAATTATGGTCTGA 59.634 44.000 8.74 0.00 46.01 3.27
579 580 6.043243 CAGTAGGTACCCAATTATGGTCTGAT 59.957 42.308 8.74 0.00 46.01 2.90
580 581 5.994416 AGGTACCCAATTATGGTCTGATT 57.006 39.130 8.74 0.00 46.01 2.57
581 582 5.694995 AGGTACCCAATTATGGTCTGATTG 58.305 41.667 8.74 0.00 46.01 2.67
582 583 5.193728 AGGTACCCAATTATGGTCTGATTGT 59.806 40.000 8.74 0.00 46.01 2.71
583 584 6.388689 AGGTACCCAATTATGGTCTGATTGTA 59.611 38.462 8.74 0.00 46.01 2.41
584 585 7.073725 AGGTACCCAATTATGGTCTGATTGTAT 59.926 37.037 8.74 0.00 46.01 2.29
585 586 7.390718 GGTACCCAATTATGGTCTGATTGTATC 59.609 40.741 0.00 0.00 46.01 2.24
586 587 5.997746 ACCCAATTATGGTCTGATTGTATCG 59.002 40.000 0.00 0.00 46.01 2.92
587 588 5.412594 CCCAATTATGGTCTGATTGTATCGG 59.587 44.000 0.00 0.00 46.01 4.18
588 589 5.997746 CCAATTATGGTCTGATTGTATCGGT 59.002 40.000 0.00 0.00 42.18 4.69
589 590 6.486657 CCAATTATGGTCTGATTGTATCGGTT 59.513 38.462 0.00 0.00 42.18 4.44
590 591 7.013274 CCAATTATGGTCTGATTGTATCGGTTT 59.987 37.037 0.00 0.00 42.18 3.27
591 592 8.405531 CAATTATGGTCTGATTGTATCGGTTTT 58.594 33.333 0.00 0.00 36.98 2.43
592 593 9.621629 AATTATGGTCTGATTGTATCGGTTTTA 57.378 29.630 0.00 0.00 36.98 1.52
593 594 8.657074 TTATGGTCTGATTGTATCGGTTTTAG 57.343 34.615 0.00 0.00 36.98 1.85
594 595 4.873827 TGGTCTGATTGTATCGGTTTTAGC 59.126 41.667 0.00 0.00 36.98 3.09
595 596 4.272748 GGTCTGATTGTATCGGTTTTAGCC 59.727 45.833 0.00 0.00 36.98 3.93
596 597 4.272748 GTCTGATTGTATCGGTTTTAGCCC 59.727 45.833 0.00 0.00 36.98 5.19
597 598 3.199677 TGATTGTATCGGTTTTAGCCCG 58.800 45.455 0.00 0.00 46.83 6.13
598 599 2.027003 TTGTATCGGTTTTAGCCCGG 57.973 50.000 0.00 0.00 45.51 5.73
599 600 0.903942 TGTATCGGTTTTAGCCCGGT 59.096 50.000 0.00 0.00 45.51 5.28
600 601 1.278699 TGTATCGGTTTTAGCCCGGTT 59.721 47.619 0.00 0.00 45.51 4.44
601 602 2.290197 TGTATCGGTTTTAGCCCGGTTT 60.290 45.455 0.00 0.00 45.51 3.27
602 603 1.913778 ATCGGTTTTAGCCCGGTTTT 58.086 45.000 0.00 0.00 45.51 2.43
603 604 1.237533 TCGGTTTTAGCCCGGTTTTC 58.762 50.000 0.00 0.00 45.51 2.29
604 605 0.241749 CGGTTTTAGCCCGGTTTTCC 59.758 55.000 0.00 0.00 41.78 3.13
618 619 2.938451 GGTTTTCCGTAGATTAACCGGG 59.062 50.000 6.32 0.00 41.98 5.73
619 620 2.314323 TTTCCGTAGATTAACCGGGC 57.686 50.000 6.32 0.00 41.98 6.13
620 621 1.193323 TTCCGTAGATTAACCGGGCA 58.807 50.000 6.32 0.00 41.98 5.36
621 622 1.193323 TCCGTAGATTAACCGGGCAA 58.807 50.000 6.32 0.00 41.98 4.52
622 623 1.764134 TCCGTAGATTAACCGGGCAAT 59.236 47.619 6.32 4.15 41.98 3.56
623 624 2.171027 TCCGTAGATTAACCGGGCAATT 59.829 45.455 6.32 0.00 41.98 2.32
624 625 2.546789 CCGTAGATTAACCGGGCAATTC 59.453 50.000 6.32 0.00 38.09 2.17
625 626 3.463944 CGTAGATTAACCGGGCAATTCT 58.536 45.455 6.32 3.87 0.00 2.40
626 627 3.493503 CGTAGATTAACCGGGCAATTCTC 59.506 47.826 6.32 0.00 0.00 2.87
627 628 3.933861 AGATTAACCGGGCAATTCTCT 57.066 42.857 6.32 0.00 0.00 3.10
628 629 4.236527 AGATTAACCGGGCAATTCTCTT 57.763 40.909 6.32 0.00 0.00 2.85
629 630 4.200092 AGATTAACCGGGCAATTCTCTTC 58.800 43.478 6.32 0.00 0.00 2.87
630 631 3.713826 TTAACCGGGCAATTCTCTTCT 57.286 42.857 6.32 0.00 0.00 2.85
631 632 2.586648 AACCGGGCAATTCTCTTCTT 57.413 45.000 6.32 0.00 0.00 2.52
632 633 2.115343 ACCGGGCAATTCTCTTCTTC 57.885 50.000 6.32 0.00 0.00 2.87
633 634 1.630878 ACCGGGCAATTCTCTTCTTCT 59.369 47.619 6.32 0.00 0.00 2.85
634 635 2.040412 ACCGGGCAATTCTCTTCTTCTT 59.960 45.455 6.32 0.00 0.00 2.52
635 636 3.263425 ACCGGGCAATTCTCTTCTTCTTA 59.737 43.478 6.32 0.00 0.00 2.10
636 637 4.261801 CCGGGCAATTCTCTTCTTCTTAA 58.738 43.478 0.00 0.00 0.00 1.85
637 638 4.884164 CCGGGCAATTCTCTTCTTCTTAAT 59.116 41.667 0.00 0.00 0.00 1.40
638 639 5.358160 CCGGGCAATTCTCTTCTTCTTAATT 59.642 40.000 0.00 0.00 0.00 1.40
639 640 6.542370 CCGGGCAATTCTCTTCTTCTTAATTA 59.458 38.462 0.00 0.00 0.00 1.40
640 641 7.067008 CCGGGCAATTCTCTTCTTCTTAATTAA 59.933 37.037 0.00 0.00 0.00 1.40
641 642 8.624776 CGGGCAATTCTCTTCTTCTTAATTAAT 58.375 33.333 0.00 0.00 0.00 1.40
642 643 9.958234 GGGCAATTCTCTTCTTCTTAATTAATC 57.042 33.333 0.00 0.00 0.00 1.75
643 644 9.657121 GGCAATTCTCTTCTTCTTAATTAATCG 57.343 33.333 0.00 0.00 0.00 3.34
649 650 9.973450 TCTCTTCTTCTTAATTAATCGATGAGG 57.027 33.333 19.96 13.97 0.00 3.86
650 651 8.594881 TCTTCTTCTTAATTAATCGATGAGGC 57.405 34.615 0.00 0.00 0.00 4.70
651 652 8.204160 TCTTCTTCTTAATTAATCGATGAGGCA 58.796 33.333 0.00 0.00 0.00 4.75
652 653 8.731275 TTCTTCTTAATTAATCGATGAGGCAA 57.269 30.769 0.00 0.00 0.00 4.52
653 654 8.908786 TCTTCTTAATTAATCGATGAGGCAAT 57.091 30.769 0.00 0.00 0.00 3.56
654 655 9.342308 TCTTCTTAATTAATCGATGAGGCAATT 57.658 29.630 0.00 3.46 0.00 2.32
655 656 9.604626 CTTCTTAATTAATCGATGAGGCAATTC 57.395 33.333 0.00 0.00 0.00 2.17
656 657 8.908786 TCTTAATTAATCGATGAGGCAATTCT 57.091 30.769 0.00 0.00 0.00 2.40
657 658 9.342308 TCTTAATTAATCGATGAGGCAATTCTT 57.658 29.630 0.00 0.00 0.00 2.52
658 659 9.956720 CTTAATTAATCGATGAGGCAATTCTTT 57.043 29.630 0.00 0.00 0.00 2.52
660 661 8.638685 AATTAATCGATGAGGCAATTCTTTTG 57.361 30.769 0.00 0.00 0.00 2.44
661 662 3.492421 TCGATGAGGCAATTCTTTTGC 57.508 42.857 1.76 1.76 44.22 3.68
668 669 2.438868 GCAATTCTTTTGCCTCCGTT 57.561 45.000 0.00 0.00 39.38 4.44
669 670 2.754472 GCAATTCTTTTGCCTCCGTTT 58.246 42.857 0.00 0.00 39.38 3.60
670 671 2.731451 GCAATTCTTTTGCCTCCGTTTC 59.269 45.455 0.00 0.00 39.38 2.78
671 672 2.979813 CAATTCTTTTGCCTCCGTTTCG 59.020 45.455 0.00 0.00 0.00 3.46
672 673 1.956297 TTCTTTTGCCTCCGTTTCGA 58.044 45.000 0.00 0.00 0.00 3.71
673 674 1.956297 TCTTTTGCCTCCGTTTCGAA 58.044 45.000 0.00 0.00 0.00 3.71
783 785 9.378551 CTGTATTTGGAACTATGCTAACAAGTA 57.621 33.333 0.00 0.00 0.00 2.24
902 962 5.275067 TGGTATAAATTTGCTGCCCATTC 57.725 39.130 0.00 0.00 0.00 2.67
1239 1316 3.781770 GATCCGGCACCAGCTCTCG 62.782 68.421 0.00 0.00 41.70 4.04
1432 1509 2.115291 GGCAAGGCCGACTTCATCC 61.115 63.158 0.00 0.00 39.62 3.51
1510 1587 1.027357 GCACATCCCCATTGCTACTG 58.973 55.000 0.00 0.00 33.26 2.74
1535 1612 4.929808 ACTACTGTTTGTTTATCAGCTCCG 59.070 41.667 0.00 0.00 33.12 4.63
1701 1788 0.750911 CTTCCTGGATGAAGCAGCCC 60.751 60.000 3.58 0.00 39.46 5.19
1704 1791 2.046023 TGGATGAAGCAGCCCACG 60.046 61.111 0.00 0.00 39.46 4.94
1766 1865 2.360165 GGCCATGCTATTCAGGAAGTTG 59.640 50.000 0.00 0.00 0.00 3.16
1809 1908 7.702348 CGTACTGAACATGTCTGAATCTGAATA 59.298 37.037 0.00 0.00 0.00 1.75
1810 1909 9.539825 GTACTGAACATGTCTGAATCTGAATAT 57.460 33.333 0.00 0.00 0.00 1.28
1927 2026 7.652105 TGTGTTATCTTGTCTCTTGTCTGTTAC 59.348 37.037 0.00 0.00 0.00 2.50
1930 2029 5.109662 TCTTGTCTCTTGTCTGTTACTCG 57.890 43.478 0.00 0.00 0.00 4.18
1994 2094 7.255590 CCTTTTCCAAAGTAATGAGATGTGTGT 60.256 37.037 0.00 0.00 0.00 3.72
1997 2097 7.581213 TCCAAAGTAATGAGATGTGTGTTTT 57.419 32.000 0.00 0.00 0.00 2.43
1999 2099 7.284261 TCCAAAGTAATGAGATGTGTGTTTTCA 59.716 33.333 0.00 0.00 0.00 2.69
2014 2114 3.820467 TGTTTTCACATCTTGCTAGTGGG 59.180 43.478 0.00 0.00 34.17 4.61
2015 2115 4.072131 GTTTTCACATCTTGCTAGTGGGA 58.928 43.478 0.00 0.00 34.17 4.37
2016 2116 4.365514 TTTCACATCTTGCTAGTGGGAA 57.634 40.909 9.87 9.87 33.75 3.97
2017 2117 4.365514 TTCACATCTTGCTAGTGGGAAA 57.634 40.909 10.96 0.15 32.73 3.13
2018 2118 4.574674 TCACATCTTGCTAGTGGGAAAT 57.425 40.909 0.00 0.00 34.17 2.17
2019 2119 4.264253 TCACATCTTGCTAGTGGGAAATG 58.736 43.478 0.00 0.00 34.17 2.32
2020 2120 3.379372 CACATCTTGCTAGTGGGAAATGG 59.621 47.826 0.00 0.00 0.00 3.16
2021 2121 2.128771 TCTTGCTAGTGGGAAATGGC 57.871 50.000 0.00 0.00 0.00 4.40
2022 2122 1.354031 TCTTGCTAGTGGGAAATGGCA 59.646 47.619 0.00 0.00 0.00 4.92
2023 2123 1.474077 CTTGCTAGTGGGAAATGGCAC 59.526 52.381 0.00 0.00 0.00 5.01
2024 2124 0.698238 TGCTAGTGGGAAATGGCACT 59.302 50.000 0.00 0.00 0.00 4.40
2025 2125 1.075374 TGCTAGTGGGAAATGGCACTT 59.925 47.619 0.00 0.00 0.00 3.16
2026 2126 1.474077 GCTAGTGGGAAATGGCACTTG 59.526 52.381 0.00 0.00 0.00 3.16
2027 2127 1.474077 CTAGTGGGAAATGGCACTTGC 59.526 52.381 0.00 0.00 41.14 4.01
2028 2128 0.469705 AGTGGGAAATGGCACTTGCA 60.470 50.000 2.02 0.00 44.36 4.08
2220 2323 2.208872 ACCCATGAGTGCCTAGGATTT 58.791 47.619 14.75 0.00 0.00 2.17
2302 2418 6.267014 ACAGTTAGTTGAAACCTAGCTAGTCA 59.733 38.462 19.31 13.36 0.00 3.41
2449 2575 8.667076 AGTCAATTCAAATCAAAGGGAAAAAG 57.333 30.769 0.00 0.00 0.00 2.27
2450 2576 7.716560 AGTCAATTCAAATCAAAGGGAAAAAGG 59.283 33.333 0.00 0.00 0.00 3.11
2451 2577 6.997476 TCAATTCAAATCAAAGGGAAAAAGGG 59.003 34.615 0.00 0.00 0.00 3.95
2452 2578 5.966853 TTCAAATCAAAGGGAAAAAGGGT 57.033 34.783 0.00 0.00 0.00 4.34
2453 2579 7.625498 ATTCAAATCAAAGGGAAAAAGGGTA 57.375 32.000 0.00 0.00 0.00 3.69
2454 2580 7.625498 TTCAAATCAAAGGGAAAAAGGGTAT 57.375 32.000 0.00 0.00 0.00 2.73
2455 2581 7.625498 TCAAATCAAAGGGAAAAAGGGTATT 57.375 32.000 0.00 0.00 0.00 1.89
2456 2582 7.449247 TCAAATCAAAGGGAAAAAGGGTATTG 58.551 34.615 0.00 0.00 0.00 1.90
2457 2583 7.071824 TCAAATCAAAGGGAAAAAGGGTATTGT 59.928 33.333 0.00 0.00 0.00 2.71
2458 2584 7.387265 AATCAAAGGGAAAAAGGGTATTGTT 57.613 32.000 0.00 0.00 0.00 2.83
2459 2585 6.413783 TCAAAGGGAAAAAGGGTATTGTTC 57.586 37.500 0.00 0.00 0.00 3.18
2537 2669 5.011635 TGACATGTTGAACTTCTGCCTACTA 59.988 40.000 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.149627 CCCCGTTTGACAACCCAGA 59.850 57.895 0.00 0.00 0.00 3.86
7 8 2.561037 GCCCCGTTTGACAACCCAG 61.561 63.158 0.00 0.00 0.00 4.45
8 9 2.519780 GCCCCGTTTGACAACCCA 60.520 61.111 0.00 0.00 0.00 4.51
9 10 2.414658 TAGGCCCCGTTTGACAACCC 62.415 60.000 0.00 0.00 0.00 4.11
10 11 0.537828 TTAGGCCCCGTTTGACAACC 60.538 55.000 0.00 0.00 0.00 3.77
11 12 0.879090 CTTAGGCCCCGTTTGACAAC 59.121 55.000 0.00 0.00 0.00 3.32
12 13 0.475044 ACTTAGGCCCCGTTTGACAA 59.525 50.000 0.00 0.00 0.00 3.18
13 14 0.250553 CACTTAGGCCCCGTTTGACA 60.251 55.000 0.00 0.00 0.00 3.58
14 15 0.035739 TCACTTAGGCCCCGTTTGAC 59.964 55.000 0.00 0.00 0.00 3.18
15 16 0.988832 ATCACTTAGGCCCCGTTTGA 59.011 50.000 0.00 0.00 0.00 2.69
16 17 1.094785 CATCACTTAGGCCCCGTTTG 58.905 55.000 0.00 0.00 0.00 2.93
17 18 0.988832 TCATCACTTAGGCCCCGTTT 59.011 50.000 0.00 0.00 0.00 3.60
18 19 0.541863 CTCATCACTTAGGCCCCGTT 59.458 55.000 0.00 0.00 0.00 4.44
19 20 0.617820 ACTCATCACTTAGGCCCCGT 60.618 55.000 0.00 0.00 0.00 5.28
20 21 0.541863 AACTCATCACTTAGGCCCCG 59.458 55.000 0.00 0.00 0.00 5.73
21 22 2.808906 AAACTCATCACTTAGGCCCC 57.191 50.000 0.00 0.00 0.00 5.80
22 23 4.781934 ACATAAACTCATCACTTAGGCCC 58.218 43.478 0.00 0.00 0.00 5.80
23 24 6.374333 TCAAACATAAACTCATCACTTAGGCC 59.626 38.462 0.00 0.00 0.00 5.19
24 25 7.094805 TGTCAAACATAAACTCATCACTTAGGC 60.095 37.037 0.00 0.00 0.00 3.93
25 26 8.322906 TGTCAAACATAAACTCATCACTTAGG 57.677 34.615 0.00 0.00 0.00 2.69
26 27 9.764870 CATGTCAAACATAAACTCATCACTTAG 57.235 33.333 0.00 0.00 36.53 2.18
27 28 8.236586 GCATGTCAAACATAAACTCATCACTTA 58.763 33.333 0.00 0.00 36.53 2.24
28 29 7.086376 GCATGTCAAACATAAACTCATCACTT 58.914 34.615 0.00 0.00 36.53 3.16
29 30 6.207221 TGCATGTCAAACATAAACTCATCACT 59.793 34.615 0.00 0.00 36.53 3.41
30 31 6.380995 TGCATGTCAAACATAAACTCATCAC 58.619 36.000 0.00 0.00 36.53 3.06
31 32 6.572167 TGCATGTCAAACATAAACTCATCA 57.428 33.333 0.00 0.00 36.53 3.07
32 33 7.086376 AGTTGCATGTCAAACATAAACTCATC 58.914 34.615 11.59 0.32 38.91 2.92
33 34 6.985117 AGTTGCATGTCAAACATAAACTCAT 58.015 32.000 11.59 0.00 38.91 2.90
34 35 6.389830 AGTTGCATGTCAAACATAAACTCA 57.610 33.333 11.59 0.00 38.91 3.41
35 36 6.697019 ACAAGTTGCATGTCAAACATAAACTC 59.303 34.615 15.23 0.20 40.66 3.01
36 37 6.572519 ACAAGTTGCATGTCAAACATAAACT 58.427 32.000 1.81 11.59 42.02 2.66
37 38 6.826893 ACAAGTTGCATGTCAAACATAAAC 57.173 33.333 1.81 8.61 36.53 2.01
38 39 7.711846 ACTACAAGTTGCATGTCAAACATAAA 58.288 30.769 1.81 0.00 36.53 1.40
39 40 7.270757 ACTACAAGTTGCATGTCAAACATAA 57.729 32.000 1.81 0.00 36.53 1.90
40 41 6.875948 ACTACAAGTTGCATGTCAAACATA 57.124 33.333 1.81 0.00 36.53 2.29
41 42 5.772825 ACTACAAGTTGCATGTCAAACAT 57.227 34.783 1.81 0.00 39.91 2.71
42 43 5.574891 AACTACAAGTTGCATGTCAAACA 57.425 34.783 1.81 0.00 37.00 2.83
43 44 5.804979 ACAAACTACAAGTTGCATGTCAAAC 59.195 36.000 1.81 2.81 38.66 2.93
44 45 5.960113 ACAAACTACAAGTTGCATGTCAAA 58.040 33.333 1.81 0.00 38.66 2.69
45 46 5.574891 ACAAACTACAAGTTGCATGTCAA 57.425 34.783 1.81 0.00 38.66 3.18
46 47 5.238432 CCTACAAACTACAAGTTGCATGTCA 59.762 40.000 1.81 0.00 38.66 3.58
47 48 5.468746 TCCTACAAACTACAAGTTGCATGTC 59.531 40.000 1.81 0.00 38.66 3.06
48 49 5.373222 TCCTACAAACTACAAGTTGCATGT 58.627 37.500 1.81 4.10 38.66 3.21
49 50 5.700832 TCTCCTACAAACTACAAGTTGCATG 59.299 40.000 1.81 0.00 38.66 4.06
50 51 5.865085 TCTCCTACAAACTACAAGTTGCAT 58.135 37.500 1.81 0.00 38.66 3.96
51 52 5.284861 TCTCCTACAAACTACAAGTTGCA 57.715 39.130 1.81 0.00 38.66 4.08
52 53 6.613755 TTTCTCCTACAAACTACAAGTTGC 57.386 37.500 1.81 0.00 38.66 4.17
53 54 6.483640 AGCTTTCTCCTACAAACTACAAGTTG 59.516 38.462 0.00 0.00 38.66 3.16
54 55 6.592870 AGCTTTCTCCTACAAACTACAAGTT 58.407 36.000 0.00 0.00 40.80 2.66
55 56 6.176014 AGCTTTCTCCTACAAACTACAAGT 57.824 37.500 0.00 0.00 0.00 3.16
56 57 6.931840 AGAAGCTTTCTCCTACAAACTACAAG 59.068 38.462 0.00 0.00 34.07 3.16
57 58 6.706270 CAGAAGCTTTCTCCTACAAACTACAA 59.294 38.462 0.00 0.00 38.11 2.41
58 59 6.223852 CAGAAGCTTTCTCCTACAAACTACA 58.776 40.000 0.00 0.00 38.11 2.74
59 60 5.639931 CCAGAAGCTTTCTCCTACAAACTAC 59.360 44.000 0.00 0.00 38.11 2.73
60 61 5.794894 CCAGAAGCTTTCTCCTACAAACTA 58.205 41.667 0.00 0.00 38.11 2.24
61 62 4.646572 CCAGAAGCTTTCTCCTACAAACT 58.353 43.478 0.00 0.00 38.11 2.66
62 63 3.189495 GCCAGAAGCTTTCTCCTACAAAC 59.811 47.826 0.00 0.00 38.11 2.93
63 64 3.412386 GCCAGAAGCTTTCTCCTACAAA 58.588 45.455 0.00 0.00 38.11 2.83
64 65 3.059352 GCCAGAAGCTTTCTCCTACAA 57.941 47.619 0.00 0.00 38.11 2.41
65 66 2.770164 GCCAGAAGCTTTCTCCTACA 57.230 50.000 0.00 0.00 38.11 2.74
78 79 2.416747 CAATCACGTTCTGAGCCAGAA 58.583 47.619 12.03 12.03 46.50 3.02
79 80 1.338105 CCAATCACGTTCTGAGCCAGA 60.338 52.381 1.25 1.25 38.87 3.86
80 81 1.081892 CCAATCACGTTCTGAGCCAG 58.918 55.000 0.00 0.00 30.20 4.85
81 82 0.955428 GCCAATCACGTTCTGAGCCA 60.955 55.000 0.00 0.00 30.20 4.75
82 83 1.648467 GGCCAATCACGTTCTGAGCC 61.648 60.000 0.00 0.40 32.24 4.70
83 84 0.674895 AGGCCAATCACGTTCTGAGC 60.675 55.000 5.01 0.00 30.20 4.26
84 85 1.363744 GAGGCCAATCACGTTCTGAG 58.636 55.000 5.01 0.00 30.20 3.35
85 86 0.389817 CGAGGCCAATCACGTTCTGA 60.390 55.000 5.01 0.00 0.00 3.27
86 87 0.670546 ACGAGGCCAATCACGTTCTG 60.671 55.000 5.01 0.00 35.47 3.02
87 88 0.034896 AACGAGGCCAATCACGTTCT 59.965 50.000 5.01 0.00 43.66 3.01
88 89 0.872388 AAACGAGGCCAATCACGTTC 59.128 50.000 18.77 0.70 45.71 3.95
89 90 4.792087 AACGAGGCCAATCACGTT 57.208 50.000 5.01 11.81 42.60 3.99
90 91 2.172851 TTAAACGAGGCCAATCACGT 57.827 45.000 5.01 5.80 40.64 4.49
91 92 2.418628 ACATTAAACGAGGCCAATCACG 59.581 45.455 5.01 5.11 0.00 4.35
92 93 3.438781 TCACATTAAACGAGGCCAATCAC 59.561 43.478 5.01 0.00 0.00 3.06
93 94 3.438781 GTCACATTAAACGAGGCCAATCA 59.561 43.478 5.01 0.00 0.00 2.57
94 95 3.485216 CGTCACATTAAACGAGGCCAATC 60.485 47.826 5.01 0.00 41.29 2.67
95 96 2.418628 CGTCACATTAAACGAGGCCAAT 59.581 45.455 5.01 0.00 41.29 3.16
96 97 1.801771 CGTCACATTAAACGAGGCCAA 59.198 47.619 5.01 0.00 41.29 4.52
97 98 1.434555 CGTCACATTAAACGAGGCCA 58.565 50.000 5.01 0.00 41.29 5.36
98 99 0.725117 CCGTCACATTAAACGAGGCC 59.275 55.000 0.00 0.00 41.29 5.19
99 100 0.096454 GCCGTCACATTAAACGAGGC 59.904 55.000 0.00 0.00 41.29 4.70
100 101 0.725117 GGCCGTCACATTAAACGAGG 59.275 55.000 0.00 0.00 41.29 4.63
101 102 0.725117 GGGCCGTCACATTAAACGAG 59.275 55.000 0.00 0.00 41.29 4.18
102 103 1.015085 CGGGCCGTCACATTAAACGA 61.015 55.000 19.97 0.00 41.29 3.85
103 104 1.293267 ACGGGCCGTCACATTAAACG 61.293 55.000 28.83 0.00 33.69 3.60
104 105 0.167251 CACGGGCCGTCACATTAAAC 59.833 55.000 31.82 0.00 38.32 2.01
105 106 0.035036 TCACGGGCCGTCACATTAAA 59.965 50.000 31.82 4.22 38.32 1.52
106 107 0.671163 GTCACGGGCCGTCACATTAA 60.671 55.000 31.82 5.74 38.32 1.40
107 108 1.079681 GTCACGGGCCGTCACATTA 60.080 57.895 31.82 7.65 38.32 1.90
108 109 1.537814 TAGTCACGGGCCGTCACATT 61.538 55.000 34.01 17.71 38.32 2.71
109 110 1.327690 ATAGTCACGGGCCGTCACAT 61.328 55.000 34.01 21.52 38.32 3.21
110 111 0.680601 TATAGTCACGGGCCGTCACA 60.681 55.000 34.01 20.25 38.32 3.58
111 112 0.672342 ATATAGTCACGGGCCGTCAC 59.328 55.000 31.82 29.03 38.32 3.67
112 113 0.671796 CATATAGTCACGGGCCGTCA 59.328 55.000 31.82 16.15 38.32 4.35
113 114 0.038526 CCATATAGTCACGGGCCGTC 60.039 60.000 31.82 19.77 38.32 4.79
114 115 1.469335 CCCATATAGTCACGGGCCGT 61.469 60.000 28.83 28.83 42.36 5.68
115 116 1.183030 TCCCATATAGTCACGGGCCG 61.183 60.000 27.06 27.06 38.68 6.13
116 117 0.608640 CTCCCATATAGTCACGGGCC 59.391 60.000 0.00 0.00 38.68 5.80
117 118 1.272769 GACTCCCATATAGTCACGGGC 59.727 57.143 0.00 0.00 42.43 6.13
118 119 1.540267 CGACTCCCATATAGTCACGGG 59.460 57.143 5.25 0.00 42.91 5.28
119 120 1.540267 CCGACTCCCATATAGTCACGG 59.460 57.143 5.25 0.00 42.91 4.94
120 121 1.068472 GCCGACTCCCATATAGTCACG 60.068 57.143 5.25 0.00 42.91 4.35
121 122 2.229302 GAGCCGACTCCCATATAGTCAC 59.771 54.545 5.25 0.00 42.91 3.67
122 123 2.158519 TGAGCCGACTCCCATATAGTCA 60.159 50.000 0.00 0.00 42.91 3.41
123 124 2.490115 CTGAGCCGACTCCCATATAGTC 59.510 54.545 0.00 0.00 42.74 2.59
124 125 2.108425 TCTGAGCCGACTCCCATATAGT 59.892 50.000 0.00 0.00 42.74 2.12
125 126 2.796557 TCTGAGCCGACTCCCATATAG 58.203 52.381 0.00 0.00 42.74 1.31
126 127 2.891580 GTTCTGAGCCGACTCCCATATA 59.108 50.000 0.00 0.00 42.74 0.86
127 128 1.689273 GTTCTGAGCCGACTCCCATAT 59.311 52.381 0.00 0.00 42.74 1.78
128 129 1.112113 GTTCTGAGCCGACTCCCATA 58.888 55.000 0.00 0.00 42.74 2.74
129 130 1.901085 GTTCTGAGCCGACTCCCAT 59.099 57.895 0.00 0.00 42.74 4.00
130 131 2.636412 CGTTCTGAGCCGACTCCCA 61.636 63.158 0.00 0.00 42.74 4.37
131 132 2.182030 CGTTCTGAGCCGACTCCC 59.818 66.667 0.00 0.00 42.74 4.30
132 133 1.444553 CACGTTCTGAGCCGACTCC 60.445 63.158 0.00 0.00 42.74 3.85
133 134 0.455295 CTCACGTTCTGAGCCGACTC 60.455 60.000 5.93 0.00 40.23 3.36
134 135 0.889638 TCTCACGTTCTGAGCCGACT 60.890 55.000 5.93 0.00 45.64 4.18
135 136 0.455295 CTCTCACGTTCTGAGCCGAC 60.455 60.000 5.93 0.00 45.64 4.79
136 137 1.587043 CCTCTCACGTTCTGAGCCGA 61.587 60.000 5.93 0.00 45.64 5.54
137 138 1.153939 CCTCTCACGTTCTGAGCCG 60.154 63.158 0.00 0.00 45.64 5.52
138 139 0.820871 ATCCTCTCACGTTCTGAGCC 59.179 55.000 0.00 0.00 45.64 4.70
139 140 2.165437 AGAATCCTCTCACGTTCTGAGC 59.835 50.000 0.00 0.00 45.64 4.26
141 142 4.636648 GTCTAGAATCCTCTCACGTTCTGA 59.363 45.833 0.00 0.00 33.36 3.27
142 143 4.201970 GGTCTAGAATCCTCTCACGTTCTG 60.202 50.000 0.00 0.00 33.36 3.02
143 144 3.949113 GGTCTAGAATCCTCTCACGTTCT 59.051 47.826 0.00 0.00 35.32 3.01
144 145 3.242804 CGGTCTAGAATCCTCTCACGTTC 60.243 52.174 0.00 0.00 32.70 3.95
145 146 2.683867 CGGTCTAGAATCCTCTCACGTT 59.316 50.000 0.00 0.00 32.70 3.99
146 147 2.290464 CGGTCTAGAATCCTCTCACGT 58.710 52.381 0.00 0.00 32.70 4.49
147 148 1.604755 CCGGTCTAGAATCCTCTCACG 59.395 57.143 0.00 0.00 32.70 4.35
148 149 2.933573 TCCGGTCTAGAATCCTCTCAC 58.066 52.381 0.00 0.00 32.70 3.51
149 150 3.117474 ACATCCGGTCTAGAATCCTCTCA 60.117 47.826 0.00 0.00 32.70 3.27
150 151 3.492337 ACATCCGGTCTAGAATCCTCTC 58.508 50.000 0.00 0.00 32.70 3.20
151 152 3.603965 ACATCCGGTCTAGAATCCTCT 57.396 47.619 0.00 0.00 35.52 3.69
152 153 3.191791 GCTACATCCGGTCTAGAATCCTC 59.808 52.174 0.00 0.00 0.00 3.71
153 154 3.158676 GCTACATCCGGTCTAGAATCCT 58.841 50.000 0.00 0.00 0.00 3.24
154 155 3.057174 CAGCTACATCCGGTCTAGAATCC 60.057 52.174 0.00 0.00 0.00 3.01
155 156 3.570550 ACAGCTACATCCGGTCTAGAATC 59.429 47.826 0.00 0.00 0.00 2.52
156 157 3.567397 ACAGCTACATCCGGTCTAGAAT 58.433 45.455 0.00 0.00 0.00 2.40
157 158 3.014304 ACAGCTACATCCGGTCTAGAA 57.986 47.619 0.00 0.00 0.00 2.10
158 159 2.730934 ACAGCTACATCCGGTCTAGA 57.269 50.000 0.00 0.00 0.00 2.43
159 160 3.303857 CGTTACAGCTACATCCGGTCTAG 60.304 52.174 0.00 0.00 0.00 2.43
160 161 2.615447 CGTTACAGCTACATCCGGTCTA 59.385 50.000 0.00 0.00 0.00 2.59
161 162 1.404391 CGTTACAGCTACATCCGGTCT 59.596 52.381 0.00 0.00 0.00 3.85
162 163 1.535437 CCGTTACAGCTACATCCGGTC 60.535 57.143 0.00 0.00 0.00 4.79
163 164 0.458669 CCGTTACAGCTACATCCGGT 59.541 55.000 0.00 0.00 0.00 5.28
164 165 0.874607 GCCGTTACAGCTACATCCGG 60.875 60.000 0.00 0.00 37.08 5.14
165 166 0.179121 TGCCGTTACAGCTACATCCG 60.179 55.000 0.00 0.00 0.00 4.18
166 167 1.933853 CTTGCCGTTACAGCTACATCC 59.066 52.381 0.00 0.00 0.00 3.51
167 168 1.933853 CCTTGCCGTTACAGCTACATC 59.066 52.381 0.00 0.00 0.00 3.06
168 169 1.406887 CCCTTGCCGTTACAGCTACAT 60.407 52.381 0.00 0.00 0.00 2.29
169 170 0.036765 CCCTTGCCGTTACAGCTACA 60.037 55.000 0.00 0.00 0.00 2.74
170 171 1.366854 GCCCTTGCCGTTACAGCTAC 61.367 60.000 0.00 0.00 0.00 3.58
171 172 1.078708 GCCCTTGCCGTTACAGCTA 60.079 57.895 0.00 0.00 0.00 3.32
172 173 2.359975 GCCCTTGCCGTTACAGCT 60.360 61.111 0.00 0.00 0.00 4.24
173 174 2.359975 AGCCCTTGCCGTTACAGC 60.360 61.111 0.00 0.00 38.69 4.40
174 175 3.578456 CAGCCCTTGCCGTTACAG 58.422 61.111 0.00 0.00 38.69 2.74
183 184 6.585695 ATCAGATAATTATTGCAGCCCTTG 57.414 37.500 0.00 0.00 0.00 3.61
184 185 5.413833 CGATCAGATAATTATTGCAGCCCTT 59.586 40.000 0.00 0.00 0.00 3.95
185 186 4.940046 CGATCAGATAATTATTGCAGCCCT 59.060 41.667 0.00 0.00 0.00 5.19
186 187 4.095483 CCGATCAGATAATTATTGCAGCCC 59.905 45.833 0.00 0.00 0.00 5.19
187 188 4.437930 GCCGATCAGATAATTATTGCAGCC 60.438 45.833 0.00 0.00 0.00 4.85
188 189 4.656041 GCCGATCAGATAATTATTGCAGC 58.344 43.478 0.00 0.00 0.00 5.25
189 190 4.389992 ACGCCGATCAGATAATTATTGCAG 59.610 41.667 0.00 0.00 0.00 4.41
190 191 4.152223 CACGCCGATCAGATAATTATTGCA 59.848 41.667 0.00 0.00 0.00 4.08
191 192 4.436050 CCACGCCGATCAGATAATTATTGC 60.436 45.833 0.00 0.00 0.00 3.56
192 193 4.093408 CCCACGCCGATCAGATAATTATTG 59.907 45.833 0.00 1.10 0.00 1.90
193 194 4.253685 CCCACGCCGATCAGATAATTATT 58.746 43.478 0.00 0.00 0.00 1.40
194 195 3.861840 CCCACGCCGATCAGATAATTAT 58.138 45.455 0.00 0.00 0.00 1.28
195 196 2.611971 GCCCACGCCGATCAGATAATTA 60.612 50.000 0.00 0.00 0.00 1.40
196 197 1.878102 GCCCACGCCGATCAGATAATT 60.878 52.381 0.00 0.00 0.00 1.40
197 198 0.320771 GCCCACGCCGATCAGATAAT 60.321 55.000 0.00 0.00 0.00 1.28
198 199 1.069090 GCCCACGCCGATCAGATAA 59.931 57.895 0.00 0.00 0.00 1.75
199 200 2.734591 GCCCACGCCGATCAGATA 59.265 61.111 0.00 0.00 0.00 1.98
209 210 1.080569 CAGTTCAAATGGCCCACGC 60.081 57.895 0.00 0.00 0.00 5.34
210 211 0.039256 CACAGTTCAAATGGCCCACG 60.039 55.000 0.00 0.00 0.00 4.94
211 212 0.319813 GCACAGTTCAAATGGCCCAC 60.320 55.000 0.00 0.00 0.00 4.61
212 213 0.469705 AGCACAGTTCAAATGGCCCA 60.470 50.000 0.00 0.00 0.00 5.36
213 214 0.681175 AAGCACAGTTCAAATGGCCC 59.319 50.000 0.00 0.00 0.00 5.80
214 215 3.874392 ATAAGCACAGTTCAAATGGCC 57.126 42.857 0.00 0.00 0.00 5.36
221 222 9.261180 GCAGAGTATATTAATAAGCACAGTTCA 57.739 33.333 0.00 0.00 0.00 3.18
222 223 8.713271 GGCAGAGTATATTAATAAGCACAGTTC 58.287 37.037 0.00 0.00 0.00 3.01
223 224 8.210946 TGGCAGAGTATATTAATAAGCACAGTT 58.789 33.333 0.00 0.00 0.00 3.16
224 225 7.657761 GTGGCAGAGTATATTAATAAGCACAGT 59.342 37.037 0.00 0.00 0.00 3.55
225 226 7.657354 TGTGGCAGAGTATATTAATAAGCACAG 59.343 37.037 0.00 0.00 0.00 3.66
226 227 7.505258 TGTGGCAGAGTATATTAATAAGCACA 58.495 34.615 0.00 0.00 0.00 4.57
227 228 7.962964 TGTGGCAGAGTATATTAATAAGCAC 57.037 36.000 0.00 0.00 0.00 4.40
228 229 9.653287 GTATGTGGCAGAGTATATTAATAAGCA 57.347 33.333 0.00 0.00 0.00 3.91
229 230 9.653287 TGTATGTGGCAGAGTATATTAATAAGC 57.347 33.333 0.00 0.00 0.00 3.09
232 233 9.599866 GCATGTATGTGGCAGAGTATATTAATA 57.400 33.333 0.00 0.00 0.00 0.98
233 234 7.278646 CGCATGTATGTGGCAGAGTATATTAAT 59.721 37.037 0.00 0.00 34.78 1.40
234 235 6.589907 CGCATGTATGTGGCAGAGTATATTAA 59.410 38.462 0.00 0.00 34.78 1.40
235 236 6.099341 CGCATGTATGTGGCAGAGTATATTA 58.901 40.000 0.00 0.00 34.78 0.98
236 237 4.931601 CGCATGTATGTGGCAGAGTATATT 59.068 41.667 0.00 0.00 34.78 1.28
237 238 4.498241 CGCATGTATGTGGCAGAGTATAT 58.502 43.478 0.00 0.00 34.78 0.86
238 239 3.913089 CGCATGTATGTGGCAGAGTATA 58.087 45.455 0.00 0.00 34.78 1.47
239 240 2.759191 CGCATGTATGTGGCAGAGTAT 58.241 47.619 0.00 0.00 34.78 2.12
240 241 2.223537 CGCATGTATGTGGCAGAGTA 57.776 50.000 0.00 0.00 34.78 2.59
241 242 3.070076 CGCATGTATGTGGCAGAGT 57.930 52.632 0.00 0.00 34.78 3.24
248 249 3.802139 ACTCGTATTTCCGCATGTATGTG 59.198 43.478 0.00 0.00 38.00 3.21
249 250 3.802139 CACTCGTATTTCCGCATGTATGT 59.198 43.478 0.00 0.00 0.00 2.29
250 251 3.184379 CCACTCGTATTTCCGCATGTATG 59.816 47.826 0.00 0.00 0.00 2.39
251 252 3.390135 CCACTCGTATTTCCGCATGTAT 58.610 45.455 0.00 0.00 0.00 2.29
252 253 2.816689 CCACTCGTATTTCCGCATGTA 58.183 47.619 0.00 0.00 0.00 2.29
253 254 1.651987 CCACTCGTATTTCCGCATGT 58.348 50.000 0.00 0.00 0.00 3.21
254 255 0.304705 GCCACTCGTATTTCCGCATG 59.695 55.000 0.00 0.00 0.00 4.06
255 256 0.107897 TGCCACTCGTATTTCCGCAT 60.108 50.000 0.00 0.00 0.00 4.73
256 257 0.739462 CTGCCACTCGTATTTCCGCA 60.739 55.000 0.00 0.00 0.00 5.69
257 258 0.739813 ACTGCCACTCGTATTTCCGC 60.740 55.000 0.00 0.00 0.00 5.54
258 259 0.999406 CACTGCCACTCGTATTTCCG 59.001 55.000 0.00 0.00 0.00 4.30
259 260 1.732259 CACACTGCCACTCGTATTTCC 59.268 52.381 0.00 0.00 0.00 3.13
260 261 2.683968 TCACACTGCCACTCGTATTTC 58.316 47.619 0.00 0.00 0.00 2.17
261 262 2.831685 TCACACTGCCACTCGTATTT 57.168 45.000 0.00 0.00 0.00 1.40
262 263 2.831685 TTCACACTGCCACTCGTATT 57.168 45.000 0.00 0.00 0.00 1.89
263 264 2.497675 AGATTCACACTGCCACTCGTAT 59.502 45.455 0.00 0.00 0.00 3.06
264 265 1.893137 AGATTCACACTGCCACTCGTA 59.107 47.619 0.00 0.00 0.00 3.43
265 266 0.681733 AGATTCACACTGCCACTCGT 59.318 50.000 0.00 0.00 0.00 4.18
266 267 1.337167 TGAGATTCACACTGCCACTCG 60.337 52.381 0.00 0.00 0.00 4.18
267 268 2.028658 TCTGAGATTCACACTGCCACTC 60.029 50.000 0.00 0.00 0.00 3.51
268 269 1.973515 TCTGAGATTCACACTGCCACT 59.026 47.619 0.00 0.00 0.00 4.00
269 270 2.344950 CTCTGAGATTCACACTGCCAC 58.655 52.381 0.00 0.00 0.00 5.01
270 271 1.277273 CCTCTGAGATTCACACTGCCA 59.723 52.381 6.17 0.00 0.00 4.92
271 272 1.406614 CCCTCTGAGATTCACACTGCC 60.407 57.143 6.17 0.00 0.00 4.85
272 273 1.552337 TCCCTCTGAGATTCACACTGC 59.448 52.381 6.17 0.00 0.00 4.40
273 274 3.594134 GTTCCCTCTGAGATTCACACTG 58.406 50.000 6.17 0.00 0.00 3.66
274 275 2.232452 CGTTCCCTCTGAGATTCACACT 59.768 50.000 6.17 0.00 0.00 3.55
275 276 2.231478 TCGTTCCCTCTGAGATTCACAC 59.769 50.000 6.17 0.00 0.00 3.82
276 277 2.525368 TCGTTCCCTCTGAGATTCACA 58.475 47.619 6.17 0.00 0.00 3.58
277 278 3.254892 GTTCGTTCCCTCTGAGATTCAC 58.745 50.000 6.17 0.00 0.00 3.18
278 279 2.897326 TGTTCGTTCCCTCTGAGATTCA 59.103 45.455 6.17 0.00 0.00 2.57
279 280 3.594603 TGTTCGTTCCCTCTGAGATTC 57.405 47.619 6.17 0.00 0.00 2.52
280 281 3.772025 AGATGTTCGTTCCCTCTGAGATT 59.228 43.478 6.17 0.00 0.00 2.40
281 282 3.370104 AGATGTTCGTTCCCTCTGAGAT 58.630 45.455 6.17 0.00 0.00 2.75
282 283 2.755655 GAGATGTTCGTTCCCTCTGAGA 59.244 50.000 6.17 0.00 0.00 3.27
283 284 2.493675 TGAGATGTTCGTTCCCTCTGAG 59.506 50.000 0.00 0.00 0.00 3.35
284 285 2.493675 CTGAGATGTTCGTTCCCTCTGA 59.506 50.000 0.00 0.00 0.00 3.27
285 286 2.493675 TCTGAGATGTTCGTTCCCTCTG 59.506 50.000 0.00 0.00 0.00 3.35
286 287 2.808919 TCTGAGATGTTCGTTCCCTCT 58.191 47.619 0.00 0.00 0.00 3.69
287 288 3.810310 ATCTGAGATGTTCGTTCCCTC 57.190 47.619 0.00 0.00 0.00 4.30
288 289 4.466370 TGTTATCTGAGATGTTCGTTCCCT 59.534 41.667 4.96 0.00 0.00 4.20
289 290 4.755411 TGTTATCTGAGATGTTCGTTCCC 58.245 43.478 4.96 0.00 0.00 3.97
290 291 6.042777 TCATGTTATCTGAGATGTTCGTTCC 58.957 40.000 4.96 0.00 0.00 3.62
291 292 7.063426 TGTTCATGTTATCTGAGATGTTCGTTC 59.937 37.037 4.96 0.00 0.00 3.95
292 293 6.873605 TGTTCATGTTATCTGAGATGTTCGTT 59.126 34.615 4.96 0.00 0.00 3.85
293 294 6.398095 TGTTCATGTTATCTGAGATGTTCGT 58.602 36.000 4.96 0.00 0.00 3.85
294 295 6.892310 TGTTCATGTTATCTGAGATGTTCG 57.108 37.500 4.96 0.00 0.00 3.95
295 296 8.549548 CAGATGTTCATGTTATCTGAGATGTTC 58.450 37.037 21.31 0.00 46.71 3.18
296 297 8.045507 ACAGATGTTCATGTTATCTGAGATGTT 58.954 33.333 27.30 12.44 46.71 2.71
297 298 7.494952 CACAGATGTTCATGTTATCTGAGATGT 59.505 37.037 27.30 13.40 46.71 3.06
298 299 7.518529 GCACAGATGTTCATGTTATCTGAGATG 60.519 40.741 27.30 20.41 46.71 2.90
299 300 6.482641 GCACAGATGTTCATGTTATCTGAGAT 59.517 38.462 27.30 0.00 46.71 2.75
300 301 5.814188 GCACAGATGTTCATGTTATCTGAGA 59.186 40.000 27.30 0.00 46.71 3.27
301 302 5.816258 AGCACAGATGTTCATGTTATCTGAG 59.184 40.000 27.30 23.11 46.71 3.35
302 303 5.737860 AGCACAGATGTTCATGTTATCTGA 58.262 37.500 27.30 0.00 46.71 3.27
304 305 4.807834 CGAGCACAGATGTTCATGTTATCT 59.192 41.667 0.00 0.00 35.89 1.98
305 306 4.025396 CCGAGCACAGATGTTCATGTTATC 60.025 45.833 0.00 0.00 35.89 1.75
306 307 3.873361 CCGAGCACAGATGTTCATGTTAT 59.127 43.478 0.00 0.00 35.89 1.89
307 308 3.261580 CCGAGCACAGATGTTCATGTTA 58.738 45.455 0.00 0.00 35.89 2.41
308 309 2.079158 CCGAGCACAGATGTTCATGTT 58.921 47.619 0.00 0.00 35.89 2.71
309 310 1.676916 CCCGAGCACAGATGTTCATGT 60.677 52.381 0.00 0.00 35.89 3.21
310 311 1.012086 CCCGAGCACAGATGTTCATG 58.988 55.000 0.00 0.00 35.89 3.07
311 312 0.904649 TCCCGAGCACAGATGTTCAT 59.095 50.000 0.00 0.00 35.89 2.57
312 313 0.247460 CTCCCGAGCACAGATGTTCA 59.753 55.000 0.00 0.00 35.89 3.18
313 314 3.056628 CTCCCGAGCACAGATGTTC 57.943 57.895 0.00 0.00 32.96 3.18
324 325 3.393089 AAGTGCTATTATGCTCCCGAG 57.607 47.619 0.00 0.00 0.00 4.63
325 326 3.728845 GAAAGTGCTATTATGCTCCCGA 58.271 45.455 0.00 0.00 0.00 5.14
326 327 2.476619 CGAAAGTGCTATTATGCTCCCG 59.523 50.000 0.00 0.00 0.00 5.14
327 328 3.728845 TCGAAAGTGCTATTATGCTCCC 58.271 45.455 0.00 0.00 0.00 4.30
328 329 4.621991 TCTCGAAAGTGCTATTATGCTCC 58.378 43.478 0.00 0.00 0.00 4.70
329 330 5.923114 TCATCTCGAAAGTGCTATTATGCTC 59.077 40.000 0.00 0.00 0.00 4.26
330 331 5.847304 TCATCTCGAAAGTGCTATTATGCT 58.153 37.500 0.00 0.00 0.00 3.79
331 332 6.422100 TCTTCATCTCGAAAGTGCTATTATGC 59.578 38.462 0.00 0.00 31.71 3.14
332 333 7.936950 TCTTCATCTCGAAAGTGCTATTATG 57.063 36.000 0.00 0.00 31.71 1.90
333 334 7.601886 CCATCTTCATCTCGAAAGTGCTATTAT 59.398 37.037 0.00 0.00 31.71 1.28
334 335 6.925718 CCATCTTCATCTCGAAAGTGCTATTA 59.074 38.462 0.00 0.00 31.71 0.98
335 336 5.757320 CCATCTTCATCTCGAAAGTGCTATT 59.243 40.000 0.00 0.00 31.71 1.73
336 337 5.069648 TCCATCTTCATCTCGAAAGTGCTAT 59.930 40.000 0.00 0.00 31.71 2.97
337 338 4.402474 TCCATCTTCATCTCGAAAGTGCTA 59.598 41.667 0.00 0.00 31.71 3.49
338 339 3.196469 TCCATCTTCATCTCGAAAGTGCT 59.804 43.478 0.00 0.00 31.71 4.40
339 340 3.525537 TCCATCTTCATCTCGAAAGTGC 58.474 45.455 0.00 0.00 31.71 4.40
340 341 7.440556 ACATAATCCATCTTCATCTCGAAAGTG 59.559 37.037 0.00 0.00 31.71 3.16
341 342 7.504403 ACATAATCCATCTTCATCTCGAAAGT 58.496 34.615 0.00 0.00 31.71 2.66
342 343 7.959689 ACATAATCCATCTTCATCTCGAAAG 57.040 36.000 0.00 0.00 31.71 2.62
343 344 7.986889 TCAACATAATCCATCTTCATCTCGAAA 59.013 33.333 0.00 0.00 31.71 3.46
344 345 7.439356 GTCAACATAATCCATCTTCATCTCGAA 59.561 37.037 0.00 0.00 0.00 3.71
345 346 6.925718 GTCAACATAATCCATCTTCATCTCGA 59.074 38.462 0.00 0.00 0.00 4.04
346 347 6.128982 CGTCAACATAATCCATCTTCATCTCG 60.129 42.308 0.00 0.00 0.00 4.04
347 348 6.703607 ACGTCAACATAATCCATCTTCATCTC 59.296 38.462 0.00 0.00 0.00 2.75
348 349 6.586344 ACGTCAACATAATCCATCTTCATCT 58.414 36.000 0.00 0.00 0.00 2.90
349 350 6.851222 ACGTCAACATAATCCATCTTCATC 57.149 37.500 0.00 0.00 0.00 2.92
350 351 8.731275 TTAACGTCAACATAATCCATCTTCAT 57.269 30.769 0.00 0.00 0.00 2.57
351 352 8.554835 TTTAACGTCAACATAATCCATCTTCA 57.445 30.769 0.00 0.00 0.00 3.02
352 353 9.834628 TTTTTAACGTCAACATAATCCATCTTC 57.165 29.630 0.00 0.00 0.00 2.87
353 354 9.840427 CTTTTTAACGTCAACATAATCCATCTT 57.160 29.630 0.00 0.00 0.00 2.40
374 375 9.642327 ATTATTTTTAACGGCGGATTACTTTTT 57.358 25.926 13.24 0.00 0.00 1.94
392 393 7.782644 TGGGTCCTTTATCGATGGATTATTTTT 59.217 33.333 8.54 0.00 34.42 1.94
418 419 5.070685 GGCCCTTTCCAATAATATCGTCTT 58.929 41.667 0.00 0.00 0.00 3.01
430 431 3.434310 GGTGAAATTTTGGCCCTTTCCAA 60.434 43.478 0.00 0.00 43.84 3.53
436 437 1.072173 GCTTGGTGAAATTTTGGCCCT 59.928 47.619 0.00 0.00 0.00 5.19
503 504 1.559149 GCGTTGCCACATGCCTTTTG 61.559 55.000 0.00 0.00 40.16 2.44
510 511 4.403137 CCCGTGCGTTGCCACATG 62.403 66.667 0.00 0.00 35.47 3.21
565 566 7.496529 AACCGATACAATCAGACCATAATTG 57.503 36.000 0.00 0.00 36.64 2.32
566 567 8.519799 AAAACCGATACAATCAGACCATAATT 57.480 30.769 0.00 0.00 0.00 1.40
567 568 9.273016 CTAAAACCGATACAATCAGACCATAAT 57.727 33.333 0.00 0.00 0.00 1.28
568 569 7.225931 GCTAAAACCGATACAATCAGACCATAA 59.774 37.037 0.00 0.00 0.00 1.90
569 570 6.704493 GCTAAAACCGATACAATCAGACCATA 59.296 38.462 0.00 0.00 0.00 2.74
570 571 5.527582 GCTAAAACCGATACAATCAGACCAT 59.472 40.000 0.00 0.00 0.00 3.55
571 572 4.873827 GCTAAAACCGATACAATCAGACCA 59.126 41.667 0.00 0.00 0.00 4.02
572 573 4.272748 GGCTAAAACCGATACAATCAGACC 59.727 45.833 0.00 0.00 0.00 3.85
573 574 4.272748 GGGCTAAAACCGATACAATCAGAC 59.727 45.833 0.00 0.00 0.00 3.51
574 575 4.448210 GGGCTAAAACCGATACAATCAGA 58.552 43.478 0.00 0.00 0.00 3.27
575 576 4.813296 GGGCTAAAACCGATACAATCAG 57.187 45.455 0.00 0.00 0.00 2.90
586 587 0.241749 CGGAAAACCGGGCTAAAACC 59.758 55.000 6.32 0.00 0.00 3.27
587 588 0.953727 ACGGAAAACCGGGCTAAAAC 59.046 50.000 6.32 0.00 37.53 2.43
588 589 2.038295 TCTACGGAAAACCGGGCTAAAA 59.962 45.455 6.32 0.00 37.53 1.52
589 590 1.622811 TCTACGGAAAACCGGGCTAAA 59.377 47.619 6.32 0.00 37.53 1.85
590 591 1.265236 TCTACGGAAAACCGGGCTAA 58.735 50.000 6.32 0.00 37.53 3.09
591 592 1.488390 ATCTACGGAAAACCGGGCTA 58.512 50.000 6.32 0.00 37.53 3.93
592 593 0.616891 AATCTACGGAAAACCGGGCT 59.383 50.000 6.32 0.00 37.53 5.19
593 594 2.314323 TAATCTACGGAAAACCGGGC 57.686 50.000 6.32 0.00 37.53 6.13
594 595 2.938451 GGTTAATCTACGGAAAACCGGG 59.062 50.000 6.32 0.00 34.31 5.73
603 604 2.249844 ATTGCCCGGTTAATCTACGG 57.750 50.000 0.00 0.00 46.79 4.02
604 605 3.463944 AGAATTGCCCGGTTAATCTACG 58.536 45.455 0.00 0.00 0.00 3.51
605 606 4.704965 AGAGAATTGCCCGGTTAATCTAC 58.295 43.478 0.00 0.00 0.00 2.59
606 607 5.130477 AGAAGAGAATTGCCCGGTTAATCTA 59.870 40.000 0.00 0.00 0.00 1.98
607 608 3.933861 AGAGAATTGCCCGGTTAATCT 57.066 42.857 0.00 0.00 0.00 2.40
608 609 4.200092 AGAAGAGAATTGCCCGGTTAATC 58.800 43.478 0.00 0.00 0.00 1.75
609 610 4.236527 AGAAGAGAATTGCCCGGTTAAT 57.763 40.909 0.00 0.00 0.00 1.40
610 611 3.713826 AGAAGAGAATTGCCCGGTTAA 57.286 42.857 0.00 0.00 0.00 2.01
611 612 3.263425 AGAAGAAGAGAATTGCCCGGTTA 59.737 43.478 0.00 0.00 0.00 2.85
612 613 2.040412 AGAAGAAGAGAATTGCCCGGTT 59.960 45.455 0.00 0.00 0.00 4.44
613 614 1.630878 AGAAGAAGAGAATTGCCCGGT 59.369 47.619 0.00 0.00 0.00 5.28
614 615 2.409948 AGAAGAAGAGAATTGCCCGG 57.590 50.000 0.00 0.00 0.00 5.73
615 616 6.442513 AATTAAGAAGAAGAGAATTGCCCG 57.557 37.500 0.00 0.00 0.00 6.13
616 617 9.958234 GATTAATTAAGAAGAAGAGAATTGCCC 57.042 33.333 3.94 0.00 0.00 5.36
617 618 9.657121 CGATTAATTAAGAAGAAGAGAATTGCC 57.343 33.333 3.94 0.00 0.00 4.52
623 624 9.973450 CCTCATCGATTAATTAAGAAGAAGAGA 57.027 33.333 21.25 12.30 0.00 3.10
624 625 8.707839 GCCTCATCGATTAATTAAGAAGAAGAG 58.292 37.037 16.89 16.89 0.00 2.85
625 626 8.204160 TGCCTCATCGATTAATTAAGAAGAAGA 58.796 33.333 3.94 5.03 0.00 2.87
626 627 8.370493 TGCCTCATCGATTAATTAAGAAGAAG 57.630 34.615 3.94 1.26 0.00 2.85
627 628 8.731275 TTGCCTCATCGATTAATTAAGAAGAA 57.269 30.769 3.94 0.00 0.00 2.52
628 629 8.908786 ATTGCCTCATCGATTAATTAAGAAGA 57.091 30.769 3.94 3.72 0.00 2.87
629 630 9.604626 GAATTGCCTCATCGATTAATTAAGAAG 57.395 33.333 3.94 0.00 0.00 2.85
630 631 9.342308 AGAATTGCCTCATCGATTAATTAAGAA 57.658 29.630 3.94 0.00 0.00 2.52
631 632 8.908786 AGAATTGCCTCATCGATTAATTAAGA 57.091 30.769 3.94 0.00 0.00 2.10
632 633 9.956720 AAAGAATTGCCTCATCGATTAATTAAG 57.043 29.630 3.94 0.00 0.00 1.85
634 635 9.734620 CAAAAGAATTGCCTCATCGATTAATTA 57.265 29.630 0.00 0.00 0.00 1.40
635 636 7.223387 GCAAAAGAATTGCCTCATCGATTAATT 59.777 33.333 0.00 0.00 39.38 1.40
636 637 6.698766 GCAAAAGAATTGCCTCATCGATTAAT 59.301 34.615 0.00 0.00 39.38 1.40
637 638 6.035843 GCAAAAGAATTGCCTCATCGATTAA 58.964 36.000 0.00 0.00 39.38 1.40
638 639 5.581605 GCAAAAGAATTGCCTCATCGATTA 58.418 37.500 0.00 0.00 39.38 1.75
639 640 4.427312 GCAAAAGAATTGCCTCATCGATT 58.573 39.130 0.00 0.00 39.38 3.34
640 641 4.037858 GCAAAAGAATTGCCTCATCGAT 57.962 40.909 1.80 0.00 39.38 3.59
641 642 3.492421 GCAAAAGAATTGCCTCATCGA 57.508 42.857 1.80 0.00 39.38 3.59
649 650 2.438868 AACGGAGGCAAAAGAATTGC 57.561 45.000 4.64 4.64 44.22 3.56
650 651 2.979813 CGAAACGGAGGCAAAAGAATTG 59.020 45.455 0.00 0.00 0.00 2.32
651 652 2.882137 TCGAAACGGAGGCAAAAGAATT 59.118 40.909 0.00 0.00 0.00 2.17
652 653 2.500229 TCGAAACGGAGGCAAAAGAAT 58.500 42.857 0.00 0.00 0.00 2.40
653 654 1.956297 TCGAAACGGAGGCAAAAGAA 58.044 45.000 0.00 0.00 0.00 2.52
654 655 1.956297 TTCGAAACGGAGGCAAAAGA 58.044 45.000 0.00 0.00 0.00 2.52
655 656 2.766970 TTTCGAAACGGAGGCAAAAG 57.233 45.000 6.47 0.00 0.00 2.27
656 657 3.505464 TTTTTCGAAACGGAGGCAAAA 57.495 38.095 10.79 0.00 0.00 2.44
680 681 2.885135 TGGTCAATTCCACTGCTGAT 57.115 45.000 0.00 0.00 31.96 2.90
685 686 3.671433 CGCAAGAATGGTCAATTCCACTG 60.671 47.826 0.00 0.00 45.10 3.66
839 898 1.229428 CGCACAAGCTTCTTGGAGAA 58.771 50.000 10.80 0.00 39.10 2.87
902 962 2.564062 AGTGACCAAAAGCAATGGATGG 59.436 45.455 9.15 0.00 40.56 3.51
933 996 2.664081 GGTGAGTGAGGGCTGAGGG 61.664 68.421 0.00 0.00 0.00 4.30
934 997 1.915266 TGGTGAGTGAGGGCTGAGG 60.915 63.158 0.00 0.00 0.00 3.86
935 998 1.190833 AGTGGTGAGTGAGGGCTGAG 61.191 60.000 0.00 0.00 0.00 3.35
936 999 1.152247 AGTGGTGAGTGAGGGCTGA 60.152 57.895 0.00 0.00 0.00 4.26
937 1000 1.294780 GAGTGGTGAGTGAGGGCTG 59.705 63.158 0.00 0.00 0.00 4.85
938 1001 1.152247 TGAGTGGTGAGTGAGGGCT 60.152 57.895 0.00 0.00 0.00 5.19
939 1002 1.004440 GTGAGTGGTGAGTGAGGGC 60.004 63.158 0.00 0.00 0.00 5.19
1432 1509 1.152989 AGCGCGTCCTCGTAGTAGAG 61.153 60.000 8.43 0.00 39.49 2.43
1464 1541 0.035458 CAAGGAAGTTCCAGCGGACT 59.965 55.000 23.87 0.00 39.61 3.85
1510 1587 5.390991 GGAGCTGATAAACAAACAGTAGTGC 60.391 44.000 0.00 0.00 34.60 4.40
1521 1598 5.007034 TGGATTTTTCGGAGCTGATAAACA 58.993 37.500 0.00 0.00 0.00 2.83
1535 1612 5.766702 TCACGTACGTACATGGATTTTTC 57.233 39.130 22.34 0.00 0.00 2.29
1701 1788 1.447838 CATCCTCGTTGGTCCCGTG 60.448 63.158 0.00 0.00 37.07 4.94
1704 1791 1.153628 CGTCATCCTCGTTGGTCCC 60.154 63.158 0.00 0.00 37.07 4.46
1750 1849 2.618816 CCAGCCAACTTCCTGAATAGCA 60.619 50.000 0.00 0.00 0.00 3.49
1813 1912 8.757877 AGCCAAACACACACCATATATTTATTT 58.242 29.630 0.00 0.00 0.00 1.40
1814 1913 8.196771 CAGCCAAACACACACCATATATTTATT 58.803 33.333 0.00 0.00 0.00 1.40
1829 1928 3.286751 GCTCGCCAGCCAAACACA 61.287 61.111 0.00 0.00 40.14 3.72
1893 1992 4.569943 AGACAAGATAACACAAGCACGAT 58.430 39.130 0.00 0.00 0.00 3.73
1927 2026 9.524106 TCTACATTACAAAATATACACACCGAG 57.476 33.333 0.00 0.00 0.00 4.63
1930 2029 8.557029 GGCTCTACATTACAAAATATACACACC 58.443 37.037 0.00 0.00 0.00 4.16
1975 2075 7.914871 TGTGAAAACACACATCTCATTACTTTG 59.085 33.333 0.00 0.00 44.29 2.77
1994 2094 4.365514 TCCCACTAGCAAGATGTGAAAA 57.634 40.909 0.00 0.00 33.95 2.29
1997 2097 4.264253 CATTTCCCACTAGCAAGATGTGA 58.736 43.478 0.00 0.00 33.95 3.58
1999 2099 3.624777 CCATTTCCCACTAGCAAGATGT 58.375 45.455 0.00 0.00 0.00 3.06
2000 2100 2.360165 GCCATTTCCCACTAGCAAGATG 59.640 50.000 0.00 0.00 0.00 2.90
2001 2101 2.025037 TGCCATTTCCCACTAGCAAGAT 60.025 45.455 0.00 0.00 0.00 2.40
2002 2102 1.354031 TGCCATTTCCCACTAGCAAGA 59.646 47.619 0.00 0.00 0.00 3.02
2003 2103 1.474077 GTGCCATTTCCCACTAGCAAG 59.526 52.381 0.00 0.00 31.03 4.01
2004 2104 1.075374 AGTGCCATTTCCCACTAGCAA 59.925 47.619 0.00 0.00 40.30 3.91
2005 2105 0.698238 AGTGCCATTTCCCACTAGCA 59.302 50.000 0.00 0.00 40.30 3.49
2006 2106 1.474077 CAAGTGCCATTTCCCACTAGC 59.526 52.381 0.00 0.00 41.16 3.42
2007 2107 1.474077 GCAAGTGCCATTTCCCACTAG 59.526 52.381 0.00 0.00 41.16 2.57
2008 2108 1.202989 TGCAAGTGCCATTTCCCACTA 60.203 47.619 0.00 0.00 41.16 2.74
2009 2109 0.469705 TGCAAGTGCCATTTCCCACT 60.470 50.000 0.00 0.00 43.69 4.00
2010 2110 0.609662 ATGCAAGTGCCATTTCCCAC 59.390 50.000 0.00 0.00 41.18 4.61
2011 2111 2.228545 TATGCAAGTGCCATTTCCCA 57.771 45.000 0.00 0.00 41.18 4.37
2012 2112 2.497273 ACTTATGCAAGTGCCATTTCCC 59.503 45.455 0.00 0.00 43.50 3.97
2013 2113 3.874392 ACTTATGCAAGTGCCATTTCC 57.126 42.857 0.00 0.00 43.50 3.13
2014 2114 5.335127 CAGTACTTATGCAAGTGCCATTTC 58.665 41.667 1.14 0.00 45.51 2.17
2015 2115 4.380867 GCAGTACTTATGCAAGTGCCATTT 60.381 41.667 4.13 0.00 45.51 2.32
2016 2116 3.129287 GCAGTACTTATGCAAGTGCCATT 59.871 43.478 4.13 0.00 45.51 3.16
2017 2117 2.684881 GCAGTACTTATGCAAGTGCCAT 59.315 45.455 4.13 0.00 45.51 4.40
2018 2118 2.083774 GCAGTACTTATGCAAGTGCCA 58.916 47.619 4.13 0.00 45.51 4.92
2019 2119 2.832672 GCAGTACTTATGCAAGTGCC 57.167 50.000 4.13 0.00 45.51 5.01
2026 2126 9.438291 CACATTTAATAGTTGCAGTACTTATGC 57.562 33.333 0.00 0.00 44.11 3.14
2277 2392 6.267014 TGACTAGCTAGGTTTCAACTAACTGT 59.733 38.462 24.35 0.00 0.00 3.55
2336 2456 0.105658 TCAGGGATAGCCTTACGCCT 60.106 55.000 0.00 0.00 38.78 5.52
2340 2460 4.223255 GGGACTTATCAGGGATAGCCTTAC 59.777 50.000 0.00 0.00 0.00 2.34
2354 2475 8.568794 GGCTTTGAATATTACTTGGGACTTATC 58.431 37.037 0.00 0.00 0.00 1.75
2389 2510 7.135591 TCCAACTCAAATCTTTTGGGAAAAT 57.864 32.000 6.84 0.00 39.27 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.