Multiple sequence alignment - TraesCS3D01G084200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G084200 chr3D 100.000 4607 0 0 1 4607 42729527 42734133 0.000000e+00 8508.0
1 TraesCS3D01G084200 chr3D 96.761 494 16 0 1 494 335743801 335744294 0.000000e+00 824.0
2 TraesCS3D01G084200 chr3A 91.164 3633 199 66 967 4541 54655293 54658861 0.000000e+00 4819.0
3 TraesCS3D01G084200 chr3A 100.000 29 0 0 689 717 592644489 592644461 2.000000e-03 54.7
4 TraesCS3D01G084200 chr3B 88.569 3578 285 64 730 4276 66574243 66577727 0.000000e+00 4228.0
5 TraesCS3D01G084200 chr3B 95.175 228 11 0 4322 4549 66578019 66578246 1.220000e-95 361.0
6 TraesCS3D01G084200 chr3B 92.857 56 0 2 4544 4599 3660768 3660819 1.370000e-10 78.7
7 TraesCS3D01G084200 chr3B 92.593 54 2 2 4546 4599 564757093 564757144 4.940000e-10 76.8
8 TraesCS3D01G084200 chr3B 90.164 61 0 4 4539 4599 620988894 620988948 1.780000e-09 75.0
9 TraesCS3D01G084200 chr6D 97.342 489 13 0 5 493 337152842 337152354 0.000000e+00 832.0
10 TraesCS3D01G084200 chr7D 96.761 494 15 1 1 494 51468003 51468495 0.000000e+00 822.0
11 TraesCS3D01G084200 chr7D 96.356 494 18 0 1 494 400987251 400987744 0.000000e+00 813.0
12 TraesCS3D01G084200 chr4D 96.755 493 16 0 1 493 318124809 318125301 0.000000e+00 822.0
13 TraesCS3D01G084200 chr1D 95.882 510 18 3 1 510 174273582 174273076 0.000000e+00 822.0
14 TraesCS3D01G084200 chr1D 96.755 493 16 0 1 493 333446250 333446742 0.000000e+00 822.0
15 TraesCS3D01G084200 chr1D 96.755 493 16 0 1 493 364330899 364330407 0.000000e+00 822.0
16 TraesCS3D01G084200 chr1D 92.857 56 1 1 4544 4599 322921725 322921673 1.370000e-10 78.7
17 TraesCS3D01G084200 chr2D 96.566 495 17 0 1 495 529359615 529360109 0.000000e+00 821.0
18 TraesCS3D01G084200 chr2D 90.323 62 6 0 653 714 629540071 629540010 1.060000e-11 82.4
19 TraesCS3D01G084200 chrUn 91.379 58 1 2 4542 4599 224653304 224653357 4.940000e-10 76.8
20 TraesCS3D01G084200 chr4B 92.727 55 0 2 4546 4600 187091152 187091102 4.940000e-10 76.8
21 TraesCS3D01G084200 chr4B 96.875 32 1 0 653 684 587154614 587154583 2.000000e-03 54.7
22 TraesCS3D01G084200 chr5B 91.228 57 1 2 4543 4599 208925753 208925805 1.780000e-09 75.0
23 TraesCS3D01G084200 chr1B 88.889 63 4 1 4537 4599 5702241 5702182 1.780000e-09 75.0
24 TraesCS3D01G084200 chr1B 91.379 58 0 3 4546 4602 607690257 607690204 1.780000e-09 75.0
25 TraesCS3D01G084200 chr1B 85.294 68 4 3 653 714 145162267 145162334 1.070000e-06 65.8
26 TraesCS3D01G084200 chr1B 96.875 32 1 0 653 684 80532433 80532464 2.000000e-03 54.7
27 TraesCS3D01G084200 chr1B 96.875 32 1 0 653 684 638839804 638839773 2.000000e-03 54.7
28 TraesCS3D01G084200 chr7A 97.143 35 1 0 774 808 526622438 526622404 4.980000e-05 60.2
29 TraesCS3D01G084200 chr5A 96.875 32 1 0 653 684 515581939 515581970 2.000000e-03 54.7
30 TraesCS3D01G084200 chr4A 96.875 32 1 0 653 684 716374423 716374454 2.000000e-03 54.7
31 TraesCS3D01G084200 chr2B 96.875 32 1 0 653 684 228453519 228453550 2.000000e-03 54.7
32 TraesCS3D01G084200 chr1A 96.875 32 1 0 653 684 23786522 23786553 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G084200 chr3D 42729527 42734133 4606 False 8508.0 8508 100.000 1 4607 1 chr3D.!!$F1 4606
1 TraesCS3D01G084200 chr3A 54655293 54658861 3568 False 4819.0 4819 91.164 967 4541 1 chr3A.!!$F1 3574
2 TraesCS3D01G084200 chr3B 66574243 66578246 4003 False 2294.5 4228 91.872 730 4549 2 chr3B.!!$F4 3819
3 TraesCS3D01G084200 chr1D 174273076 174273582 506 True 822.0 822 95.882 1 510 1 chr1D.!!$R1 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
647 648 0.032615 AGGCCCTCAAACCAAACACA 60.033 50.0 0.00 0.00 0.00 3.72 F
680 681 0.247537 CGTTCCAAATTACTCGCCGC 60.248 55.0 0.00 0.00 0.00 6.53 F
681 682 0.247537 GTTCCAAATTACTCGCCGCG 60.248 55.0 6.39 6.39 0.00 6.46 F
696 697 0.734942 CCGCGGTCACAACGAGTAAT 60.735 55.0 19.50 0.00 0.00 1.89 F
2595 2639 0.821711 TTTGTGCCTGCTACCGCTTT 60.822 50.0 0.00 0.00 36.97 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1948 1970 0.520404 CCAGCAGCAAGTGACATCAC 59.480 55.000 3.72 3.72 46.77 3.06 R
2619 2663 0.588252 CACAGGACAAAGCAAGGTCG 59.412 55.000 0.00 0.00 34.87 4.79 R
2748 2792 8.859156 TGAAATAAGCTGCATTTTAAAATCGAC 58.141 29.630 10.53 4.63 0.00 4.20 R
2749 2793 8.978564 TGAAATAAGCTGCATTTTAAAATCGA 57.021 26.923 10.53 0.00 0.00 3.59 R
4009 4066 0.107508 ATCTCCACCTGAATGCCACG 60.108 55.000 0.00 0.00 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.729510 CCATGGTTGGGTTTTACCTTAATG 58.270 41.667 2.57 0.00 39.56 1.90
27 28 6.014156 CCATGGTTGGGTTTTACCTTAATGAA 60.014 38.462 2.57 0.00 39.56 2.57
29 30 6.137559 TGGTTGGGTTTTACCTTAATGAACT 58.862 36.000 0.00 0.00 38.64 3.01
97 98 8.719648 CATATGATCCAAGAAGAGAAAGTATGC 58.280 37.037 0.00 0.00 0.00 3.14
183 184 0.935196 GATAATTCCGCACACCGACC 59.065 55.000 0.00 0.00 40.02 4.79
345 346 3.297472 GTTTCTAGTTGGAAGCAAACGC 58.703 45.455 0.00 0.00 32.65 4.84
349 350 0.531974 AGTTGGAAGCAAACGCTCGA 60.532 50.000 0.00 0.00 39.40 4.04
400 401 9.599056 AGATAGGACTTGAGAGAATATTGATCA 57.401 33.333 0.00 0.00 0.00 2.92
450 451 5.030147 ACTCCATACTTATCACTTCCACCA 58.970 41.667 0.00 0.00 0.00 4.17
460 461 4.666412 TCACTTCCACCATTGGGAATTA 57.334 40.909 7.78 0.00 43.16 1.40
482 483 3.704566 ACTACGATGATTCCCTGCACTTA 59.295 43.478 0.00 0.00 0.00 2.24
494 495 4.422073 CCTGCACTTAGGGATTATCACA 57.578 45.455 0.00 0.00 34.06 3.58
495 496 4.978099 CCTGCACTTAGGGATTATCACAT 58.022 43.478 0.00 0.00 34.06 3.21
496 497 4.758674 CCTGCACTTAGGGATTATCACATG 59.241 45.833 0.00 0.00 34.06 3.21
498 499 3.503748 GCACTTAGGGATTATCACATGCC 59.496 47.826 0.00 0.00 34.85 4.40
499 500 4.717877 CACTTAGGGATTATCACATGCCA 58.282 43.478 0.00 0.00 37.12 4.92
500 501 5.319453 CACTTAGGGATTATCACATGCCAT 58.681 41.667 0.00 0.00 37.12 4.40
501 502 5.771666 CACTTAGGGATTATCACATGCCATT 59.228 40.000 0.00 0.00 37.12 3.16
502 503 6.266103 CACTTAGGGATTATCACATGCCATTT 59.734 38.462 0.00 0.00 37.12 2.32
503 504 6.840705 ACTTAGGGATTATCACATGCCATTTT 59.159 34.615 0.00 0.00 37.12 1.82
504 505 7.345392 ACTTAGGGATTATCACATGCCATTTTT 59.655 33.333 0.00 0.00 37.12 1.94
518 519 3.027292 TTTTTCGCGGCTCACCAC 58.973 55.556 6.13 0.00 34.57 4.16
519 520 1.820056 TTTTTCGCGGCTCACCACA 60.820 52.632 6.13 0.00 34.57 4.17
520 521 1.169661 TTTTTCGCGGCTCACCACAT 61.170 50.000 6.13 0.00 34.57 3.21
521 522 1.573829 TTTTCGCGGCTCACCACATC 61.574 55.000 6.13 0.00 34.57 3.06
522 523 3.950794 TTCGCGGCTCACCACATCC 62.951 63.158 6.13 0.00 34.57 3.51
523 524 4.457496 CGCGGCTCACCACATCCT 62.457 66.667 0.00 0.00 34.57 3.24
524 525 2.045926 GCGGCTCACCACATCCTT 60.046 61.111 0.00 0.00 34.57 3.36
525 526 2.401766 GCGGCTCACCACATCCTTG 61.402 63.158 0.00 0.00 34.57 3.61
526 527 1.003355 CGGCTCACCACATCCTTGT 60.003 57.895 0.00 0.00 36.15 3.16
527 528 0.606401 CGGCTCACCACATCCTTGTT 60.606 55.000 0.00 0.00 32.34 2.83
528 529 1.620822 GGCTCACCACATCCTTGTTT 58.379 50.000 0.00 0.00 32.34 2.83
529 530 1.963515 GGCTCACCACATCCTTGTTTT 59.036 47.619 0.00 0.00 32.34 2.43
530 531 2.365293 GGCTCACCACATCCTTGTTTTT 59.635 45.455 0.00 0.00 32.34 1.94
531 532 3.383761 GCTCACCACATCCTTGTTTTTG 58.616 45.455 0.00 0.00 32.34 2.44
532 533 3.068024 GCTCACCACATCCTTGTTTTTGA 59.932 43.478 0.00 0.00 32.34 2.69
533 534 4.262164 GCTCACCACATCCTTGTTTTTGAT 60.262 41.667 0.00 0.00 32.34 2.57
534 535 5.048083 GCTCACCACATCCTTGTTTTTGATA 60.048 40.000 0.00 0.00 32.34 2.15
535 536 6.516527 GCTCACCACATCCTTGTTTTTGATAA 60.517 38.462 0.00 0.00 32.34 1.75
536 537 7.353414 TCACCACATCCTTGTTTTTGATAAA 57.647 32.000 0.00 0.00 32.34 1.40
537 538 7.961351 TCACCACATCCTTGTTTTTGATAAAT 58.039 30.769 0.00 0.00 32.34 1.40
538 539 9.083422 TCACCACATCCTTGTTTTTGATAAATA 57.917 29.630 0.00 0.00 32.34 1.40
539 540 9.874205 CACCACATCCTTGTTTTTGATAAATAT 57.126 29.630 0.00 0.00 32.34 1.28
547 548 9.859427 CCTTGTTTTTGATAAATATTCAGAGCA 57.141 29.630 0.00 0.00 0.00 4.26
563 564 2.521103 GCATCTAGCTGACCCTCCA 58.479 57.895 0.00 0.00 41.15 3.86
564 565 1.055040 GCATCTAGCTGACCCTCCAT 58.945 55.000 0.00 0.00 41.15 3.41
565 566 1.001860 GCATCTAGCTGACCCTCCATC 59.998 57.143 0.00 0.00 41.15 3.51
566 567 1.622811 CATCTAGCTGACCCTCCATCC 59.377 57.143 0.00 0.00 0.00 3.51
567 568 0.105453 TCTAGCTGACCCTCCATCCC 60.105 60.000 0.00 0.00 0.00 3.85
568 569 0.105246 CTAGCTGACCCTCCATCCCT 60.105 60.000 0.00 0.00 0.00 4.20
569 570 0.105453 TAGCTGACCCTCCATCCCTC 60.105 60.000 0.00 0.00 0.00 4.30
570 571 2.447714 GCTGACCCTCCATCCCTCC 61.448 68.421 0.00 0.00 0.00 4.30
571 572 1.316266 CTGACCCTCCATCCCTCCT 59.684 63.158 0.00 0.00 0.00 3.69
572 573 0.762461 CTGACCCTCCATCCCTCCTC 60.762 65.000 0.00 0.00 0.00 3.71
573 574 1.834822 GACCCTCCATCCCTCCTCG 60.835 68.421 0.00 0.00 0.00 4.63
574 575 2.283809 CCCTCCATCCCTCCTCGT 59.716 66.667 0.00 0.00 0.00 4.18
575 576 1.834822 CCCTCCATCCCTCCTCGTC 60.835 68.421 0.00 0.00 0.00 4.20
576 577 1.834822 CCTCCATCCCTCCTCGTCC 60.835 68.421 0.00 0.00 0.00 4.79
577 578 1.834822 CTCCATCCCTCCTCGTCCC 60.835 68.421 0.00 0.00 0.00 4.46
578 579 2.041922 CCATCCCTCCTCGTCCCA 60.042 66.667 0.00 0.00 0.00 4.37
579 580 2.136878 CCATCCCTCCTCGTCCCAG 61.137 68.421 0.00 0.00 0.00 4.45
580 581 1.075970 CATCCCTCCTCGTCCCAGA 60.076 63.158 0.00 0.00 0.00 3.86
581 582 0.470833 CATCCCTCCTCGTCCCAGAT 60.471 60.000 0.00 0.00 0.00 2.90
582 583 0.178947 ATCCCTCCTCGTCCCAGATC 60.179 60.000 0.00 0.00 0.00 2.75
583 584 1.231641 CCCTCCTCGTCCCAGATCT 59.768 63.158 0.00 0.00 0.00 2.75
584 585 0.478942 CCCTCCTCGTCCCAGATCTA 59.521 60.000 0.00 0.00 0.00 1.98
585 586 1.133450 CCCTCCTCGTCCCAGATCTAA 60.133 57.143 0.00 0.00 0.00 2.10
586 587 2.667470 CCTCCTCGTCCCAGATCTAAA 58.333 52.381 0.00 0.00 0.00 1.85
587 588 2.362717 CCTCCTCGTCCCAGATCTAAAC 59.637 54.545 0.00 0.00 0.00 2.01
588 589 2.022195 TCCTCGTCCCAGATCTAAACG 58.978 52.381 14.29 14.29 34.80 3.60
589 590 1.067212 CCTCGTCCCAGATCTAAACGG 59.933 57.143 18.15 6.81 34.30 4.44
590 591 1.067212 CTCGTCCCAGATCTAAACGGG 59.933 57.143 18.15 14.32 40.32 5.28
591 592 0.822164 CGTCCCAGATCTAAACGGGT 59.178 55.000 14.04 0.00 39.87 5.28
592 593 1.202382 CGTCCCAGATCTAAACGGGTC 60.202 57.143 14.04 8.83 39.87 4.46
593 594 1.108776 TCCCAGATCTAAACGGGTCG 58.891 55.000 14.04 0.00 39.87 4.79
594 595 0.529992 CCCAGATCTAAACGGGTCGC 60.530 60.000 7.56 0.00 33.67 5.19
595 596 0.870307 CCAGATCTAAACGGGTCGCG 60.870 60.000 7.88 7.88 0.00 5.87
596 597 0.870307 CAGATCTAAACGGGTCGCGG 60.870 60.000 14.28 0.00 0.00 6.46
597 598 2.202837 ATCTAAACGGGTCGCGGC 60.203 61.111 14.28 3.04 0.00 6.53
598 599 3.728279 ATCTAAACGGGTCGCGGCC 62.728 63.158 24.67 24.67 0.00 6.13
607 608 3.416382 GTCGCGGCCGCTGTAAAA 61.416 61.111 43.60 21.13 39.32 1.52
608 609 2.665520 TCGCGGCCGCTGTAAAAA 60.666 55.556 43.60 19.95 39.32 1.94
626 627 4.769345 AAAAAGGGCTATCTCTGAGAGG 57.231 45.455 13.50 9.36 0.00 3.69
627 628 3.697190 AAAGGGCTATCTCTGAGAGGA 57.303 47.619 13.50 2.94 0.00 3.71
628 629 3.697190 AAGGGCTATCTCTGAGAGGAA 57.303 47.619 13.50 0.00 0.00 3.36
629 630 3.243359 AGGGCTATCTCTGAGAGGAAG 57.757 52.381 13.50 8.44 0.00 3.46
630 631 2.158325 AGGGCTATCTCTGAGAGGAAGG 60.158 54.545 13.50 0.00 0.00 3.46
631 632 1.618343 GGCTATCTCTGAGAGGAAGGC 59.382 57.143 17.69 17.69 33.38 4.35
632 633 1.618343 GCTATCTCTGAGAGGAAGGCC 59.382 57.143 13.50 0.00 0.00 5.19
633 634 2.247358 CTATCTCTGAGAGGAAGGCCC 58.753 57.143 13.50 0.00 33.31 5.80
641 642 4.018195 AGGAAGGCCCTCAAACCA 57.982 55.556 3.19 0.00 43.31 3.67
642 643 2.250494 AGGAAGGCCCTCAAACCAA 58.750 52.632 3.19 0.00 43.31 3.67
643 644 0.560688 AGGAAGGCCCTCAAACCAAA 59.439 50.000 3.19 0.00 43.31 3.28
644 645 0.679505 GGAAGGCCCTCAAACCAAAC 59.320 55.000 3.19 0.00 0.00 2.93
645 646 1.408969 GAAGGCCCTCAAACCAAACA 58.591 50.000 0.00 0.00 0.00 2.83
646 647 1.068588 GAAGGCCCTCAAACCAAACAC 59.931 52.381 0.00 0.00 0.00 3.32
647 648 0.032615 AGGCCCTCAAACCAAACACA 60.033 50.000 0.00 0.00 0.00 3.72
648 649 1.047801 GGCCCTCAAACCAAACACAT 58.952 50.000 0.00 0.00 0.00 3.21
649 650 1.000843 GGCCCTCAAACCAAACACATC 59.999 52.381 0.00 0.00 0.00 3.06
650 651 1.000843 GCCCTCAAACCAAACACATCC 59.999 52.381 0.00 0.00 0.00 3.51
651 652 2.315176 CCCTCAAACCAAACACATCCA 58.685 47.619 0.00 0.00 0.00 3.41
652 653 2.899256 CCCTCAAACCAAACACATCCAT 59.101 45.455 0.00 0.00 0.00 3.41
653 654 4.085733 CCCTCAAACCAAACACATCCATA 58.914 43.478 0.00 0.00 0.00 2.74
654 655 4.082245 CCCTCAAACCAAACACATCCATAC 60.082 45.833 0.00 0.00 0.00 2.39
655 656 4.766891 CCTCAAACCAAACACATCCATACT 59.233 41.667 0.00 0.00 0.00 2.12
656 657 5.106157 CCTCAAACCAAACACATCCATACTC 60.106 44.000 0.00 0.00 0.00 2.59
657 658 4.764823 TCAAACCAAACACATCCATACTCC 59.235 41.667 0.00 0.00 0.00 3.85
658 659 3.366052 ACCAAACACATCCATACTCCC 57.634 47.619 0.00 0.00 0.00 4.30
659 660 2.919602 ACCAAACACATCCATACTCCCT 59.080 45.455 0.00 0.00 0.00 4.20
660 661 3.333680 ACCAAACACATCCATACTCCCTT 59.666 43.478 0.00 0.00 0.00 3.95
661 662 3.947834 CCAAACACATCCATACTCCCTTC 59.052 47.826 0.00 0.00 0.00 3.46
662 663 3.543680 AACACATCCATACTCCCTTCG 57.456 47.619 0.00 0.00 0.00 3.79
663 664 2.467880 ACACATCCATACTCCCTTCGT 58.532 47.619 0.00 0.00 0.00 3.85
664 665 2.838202 ACACATCCATACTCCCTTCGTT 59.162 45.455 0.00 0.00 0.00 3.85
665 666 3.118738 ACACATCCATACTCCCTTCGTTC 60.119 47.826 0.00 0.00 0.00 3.95
666 667 2.434702 ACATCCATACTCCCTTCGTTCC 59.565 50.000 0.00 0.00 0.00 3.62
667 668 2.241281 TCCATACTCCCTTCGTTCCA 57.759 50.000 0.00 0.00 0.00 3.53
668 669 2.542550 TCCATACTCCCTTCGTTCCAA 58.457 47.619 0.00 0.00 0.00 3.53
669 670 2.907696 TCCATACTCCCTTCGTTCCAAA 59.092 45.455 0.00 0.00 0.00 3.28
670 671 3.521937 TCCATACTCCCTTCGTTCCAAAT 59.478 43.478 0.00 0.00 0.00 2.32
671 672 4.018779 TCCATACTCCCTTCGTTCCAAATT 60.019 41.667 0.00 0.00 0.00 1.82
672 673 5.190132 TCCATACTCCCTTCGTTCCAAATTA 59.810 40.000 0.00 0.00 0.00 1.40
673 674 5.296035 CCATACTCCCTTCGTTCCAAATTAC 59.704 44.000 0.00 0.00 0.00 1.89
674 675 4.635699 ACTCCCTTCGTTCCAAATTACT 57.364 40.909 0.00 0.00 0.00 2.24
675 676 4.576879 ACTCCCTTCGTTCCAAATTACTC 58.423 43.478 0.00 0.00 0.00 2.59
676 677 3.592059 TCCCTTCGTTCCAAATTACTCG 58.408 45.455 0.00 0.00 0.00 4.18
677 678 2.095372 CCCTTCGTTCCAAATTACTCGC 59.905 50.000 0.00 0.00 0.00 5.03
678 679 2.095372 CCTTCGTTCCAAATTACTCGCC 59.905 50.000 0.00 0.00 0.00 5.54
679 680 1.352114 TCGTTCCAAATTACTCGCCG 58.648 50.000 0.00 0.00 0.00 6.46
680 681 0.247537 CGTTCCAAATTACTCGCCGC 60.248 55.000 0.00 0.00 0.00 6.53
681 682 0.247537 GTTCCAAATTACTCGCCGCG 60.248 55.000 6.39 6.39 0.00 6.46
682 683 1.363145 TTCCAAATTACTCGCCGCGG 61.363 55.000 24.05 24.05 0.00 6.46
683 684 2.104253 CCAAATTACTCGCCGCGGT 61.104 57.895 28.70 9.45 0.00 5.68
684 685 1.347221 CAAATTACTCGCCGCGGTC 59.653 57.895 28.70 18.03 0.00 4.79
685 686 1.079681 AAATTACTCGCCGCGGTCA 60.080 52.632 28.70 12.75 0.00 4.02
686 687 1.356527 AAATTACTCGCCGCGGTCAC 61.357 55.000 28.70 9.36 0.00 3.67
687 688 2.495366 AATTACTCGCCGCGGTCACA 62.495 55.000 28.70 6.68 0.00 3.58
688 689 2.495366 ATTACTCGCCGCGGTCACAA 62.495 55.000 28.70 14.78 0.00 3.33
689 690 3.902162 TACTCGCCGCGGTCACAAC 62.902 63.158 28.70 7.66 0.00 3.32
694 695 2.256158 CCGCGGTCACAACGAGTA 59.744 61.111 19.50 0.00 0.00 2.59
695 696 1.372004 CCGCGGTCACAACGAGTAA 60.372 57.895 19.50 0.00 0.00 2.24
696 697 0.734942 CCGCGGTCACAACGAGTAAT 60.735 55.000 19.50 0.00 0.00 1.89
697 698 1.065358 CGCGGTCACAACGAGTAATT 58.935 50.000 0.00 0.00 0.00 1.40
698 699 1.458064 CGCGGTCACAACGAGTAATTT 59.542 47.619 0.00 0.00 0.00 1.82
699 700 2.720590 CGCGGTCACAACGAGTAATTTG 60.721 50.000 0.00 0.00 0.00 2.32
700 701 2.412325 GCGGTCACAACGAGTAATTTGG 60.412 50.000 0.00 0.00 0.00 3.28
701 702 3.061322 CGGTCACAACGAGTAATTTGGA 58.939 45.455 0.00 0.00 0.00 3.53
702 703 3.495377 CGGTCACAACGAGTAATTTGGAA 59.505 43.478 0.00 0.00 0.00 3.53
703 704 4.609783 CGGTCACAACGAGTAATTTGGAAC 60.610 45.833 0.00 0.00 0.00 3.62
704 705 4.451557 GTCACAACGAGTAATTTGGAACG 58.548 43.478 0.00 0.00 0.00 3.95
705 706 4.025480 GTCACAACGAGTAATTTGGAACGT 60.025 41.667 0.00 0.00 35.56 3.99
706 707 5.175491 GTCACAACGAGTAATTTGGAACGTA 59.825 40.000 0.00 0.00 33.76 3.57
707 708 5.403166 TCACAACGAGTAATTTGGAACGTAG 59.597 40.000 0.00 0.00 33.76 3.51
708 709 4.687483 ACAACGAGTAATTTGGAACGTAGG 59.313 41.667 0.00 0.00 33.76 3.18
709 710 3.853475 ACGAGTAATTTGGAACGTAGGG 58.147 45.455 0.00 0.00 32.42 3.53
710 711 3.511146 ACGAGTAATTTGGAACGTAGGGA 59.489 43.478 0.00 0.00 32.42 4.20
711 712 4.110482 CGAGTAATTTGGAACGTAGGGAG 58.890 47.826 0.00 0.00 0.00 4.30
712 713 4.381292 CGAGTAATTTGGAACGTAGGGAGT 60.381 45.833 0.00 0.00 0.00 3.85
713 714 5.163622 CGAGTAATTTGGAACGTAGGGAGTA 60.164 44.000 0.00 0.00 0.00 2.59
714 715 6.218108 AGTAATTTGGAACGTAGGGAGTAG 57.782 41.667 0.00 0.00 0.00 2.57
715 716 5.718607 AGTAATTTGGAACGTAGGGAGTAGT 59.281 40.000 0.00 0.00 0.00 2.73
716 717 5.494390 AATTTGGAACGTAGGGAGTAGTT 57.506 39.130 0.00 0.00 0.00 2.24
717 718 4.525912 TTTGGAACGTAGGGAGTAGTTC 57.474 45.455 0.00 0.00 41.40 3.01
718 719 2.086869 TGGAACGTAGGGAGTAGTTCG 58.913 52.381 0.00 0.00 42.61 3.95
719 720 1.202234 GGAACGTAGGGAGTAGTTCGC 60.202 57.143 0.00 0.00 42.61 4.70
720 721 1.470098 GAACGTAGGGAGTAGTTCGCA 59.530 52.381 0.00 0.00 41.01 5.10
721 722 1.760192 ACGTAGGGAGTAGTTCGCAT 58.240 50.000 0.00 0.00 41.01 4.73
722 723 2.923121 ACGTAGGGAGTAGTTCGCATA 58.077 47.619 0.00 0.00 41.01 3.14
723 724 3.484407 ACGTAGGGAGTAGTTCGCATAT 58.516 45.455 0.00 0.00 41.01 1.78
724 725 3.501445 ACGTAGGGAGTAGTTCGCATATC 59.499 47.826 0.00 0.00 41.01 1.63
725 726 3.501062 CGTAGGGAGTAGTTCGCATATCA 59.499 47.826 0.00 0.00 41.01 2.15
726 727 4.023450 CGTAGGGAGTAGTTCGCATATCAA 60.023 45.833 0.00 0.00 41.01 2.57
727 728 4.592485 AGGGAGTAGTTCGCATATCAAG 57.408 45.455 0.00 0.00 41.01 3.02
728 729 3.961408 AGGGAGTAGTTCGCATATCAAGT 59.039 43.478 0.00 0.00 41.01 3.16
735 736 5.786401 AGTTCGCATATCAAGTTTGTCTC 57.214 39.130 0.00 0.00 0.00 3.36
744 745 4.857871 TCAAGTTTGTCTCACGTCAAAG 57.142 40.909 0.80 0.00 34.83 2.77
751 752 2.093394 TGTCTCACGTCAAAGTTTCCCA 60.093 45.455 0.00 0.00 0.00 4.37
755 756 2.940410 TCACGTCAAAGTTTCCCACTTC 59.060 45.455 0.00 0.00 45.77 3.01
761 762 2.256117 AAGTTTCCCACTTCGACCAG 57.744 50.000 0.00 0.00 42.62 4.00
764 765 2.372172 AGTTTCCCACTTCGACCAGAAT 59.628 45.455 0.00 0.00 38.34 2.40
766 767 3.502123 TTCCCACTTCGACCAGAATTT 57.498 42.857 0.00 0.00 38.34 1.82
829 836 9.365311 CAATAAACTCGTTATAATAAGTTGGCG 57.635 33.333 13.22 0.36 32.53 5.69
844 854 8.911918 ATAAGTTGGCGTTGTAAATATCCATA 57.088 30.769 0.00 0.00 0.00 2.74
848 858 8.349983 AGTTGGCGTTGTAAATATCCATATTTC 58.650 33.333 7.66 2.66 40.89 2.17
880 890 6.685527 TTTTTGCCAAACTTTTTATGACCC 57.314 33.333 0.00 0.00 0.00 4.46
886 896 5.452636 GCCAAACTTTTTATGACCCAAGACA 60.453 40.000 0.00 0.00 0.00 3.41
903 913 4.119442 AGACAAACATAATACGCGGAGT 57.881 40.909 12.47 2.60 0.00 3.85
908 918 5.870978 ACAAACATAATACGCGGAGTAAAGT 59.129 36.000 12.47 6.23 39.04 2.66
913 923 6.255020 ACATAATACGCGGAGTAAAGTGAAAG 59.745 38.462 12.47 0.00 39.04 2.62
931 941 1.418334 AGGGAGGGAGTGATTCGATG 58.582 55.000 0.00 0.00 0.00 3.84
933 943 1.069358 GGGAGGGAGTGATTCGATGTC 59.931 57.143 0.00 0.00 0.00 3.06
1002 1012 6.870439 GGAAAAGAAAGAGGTGAAATTGGATG 59.130 38.462 0.00 0.00 0.00 3.51
1044 1054 1.276138 CTCTGGCCCCCAATCAAAAAC 59.724 52.381 0.00 0.00 30.80 2.43
1058 1069 7.386299 CCCAATCAAAAACCATCGTCATAAAAA 59.614 33.333 0.00 0.00 0.00 1.94
1064 1075 2.025321 ACCATCGTCATAAAAAGCCCCT 60.025 45.455 0.00 0.00 0.00 4.79
1065 1076 3.023832 CCATCGTCATAAAAAGCCCCTT 58.976 45.455 0.00 0.00 0.00 3.95
1066 1077 3.447229 CCATCGTCATAAAAAGCCCCTTT 59.553 43.478 0.00 0.00 34.94 3.11
1067 1078 4.081697 CCATCGTCATAAAAAGCCCCTTTT 60.082 41.667 0.00 0.00 44.27 2.27
1077 1088 1.069775 AGCCCCTTTTAACCCGAAGA 58.930 50.000 0.00 0.00 0.00 2.87
1248 1259 3.394836 AGCCTCGCCAACTCCCTC 61.395 66.667 0.00 0.00 0.00 4.30
1251 1262 2.581354 CTCGCCAACTCCCTCCTG 59.419 66.667 0.00 0.00 0.00 3.86
1463 1474 2.960129 CGCCCGCGACTGGTAATC 60.960 66.667 8.23 0.00 42.83 1.75
1472 1483 1.344763 CGACTGGTAATCCCCCATCTC 59.655 57.143 0.00 0.00 0.00 2.75
1473 1484 1.700186 GACTGGTAATCCCCCATCTCC 59.300 57.143 0.00 0.00 0.00 3.71
1515 1526 2.054232 TTCGATTCGGCTCTAGTCCT 57.946 50.000 6.18 0.00 0.00 3.85
1579 1590 2.544685 CTTGCTAGTTCATCCTCACCG 58.455 52.381 0.00 0.00 0.00 4.94
1650 1671 4.041198 ACCTTACTTTAGCCTACTGTTGCA 59.959 41.667 5.07 0.00 0.00 4.08
1654 1675 5.183014 ACTTTAGCCTACTGTTGCAAAAC 57.817 39.130 0.00 0.00 0.00 2.43
1664 1685 3.365832 CTGTTGCAAAACAGCACTAGTG 58.634 45.455 18.93 18.93 45.61 2.74
1665 1686 2.098934 TGTTGCAAAACAGCACTAGTGG 59.901 45.455 23.95 10.99 45.61 4.00
1687 1708 4.482386 GCATTACACTGACGAGTCAAGTA 58.518 43.478 7.38 9.91 39.39 2.24
1712 1733 8.868522 AATTACAGATGAAGAAGGATTTGACA 57.131 30.769 0.00 0.00 0.00 3.58
1714 1735 8.868522 TTACAGATGAAGAAGGATTTGACATT 57.131 30.769 0.00 0.00 0.00 2.71
1837 1858 0.953960 ACGGAACCATTCTTCACCGC 60.954 55.000 0.00 0.00 43.36 5.68
1948 1970 6.934083 AGGTACCCAAGCAAACAATTTTTATG 59.066 34.615 8.74 0.00 0.00 1.90
1959 1981 8.550376 GCAAACAATTTTTATGTGATGTCACTT 58.450 29.630 13.71 10.08 46.55 3.16
1990 2012 7.096551 TGGATTAATTTACTTGCTTGCTTTCC 58.903 34.615 0.00 0.00 0.00 3.13
1995 2017 3.286915 CTTGCTTGCTTTCCGGCCC 62.287 63.158 0.00 0.00 0.00 5.80
2011 2046 1.743394 GGCCCGTTTCTAATCTTGTGG 59.257 52.381 0.00 0.00 0.00 4.17
2036 2074 1.818785 GCTGCAGCCTGATGAGACC 60.819 63.158 28.76 0.00 34.31 3.85
2102 2140 0.957395 ATTGCACTGCCGAGTTCAGG 60.957 55.000 0.00 0.00 35.94 3.86
2129 2167 1.771854 TGGGTGAACTCCAAGCTTACA 59.228 47.619 0.00 0.00 0.00 2.41
2168 2206 1.613925 CCTCCATCGACATACCATCGT 59.386 52.381 0.00 0.00 40.50 3.73
2198 2236 6.367374 TTCAGTGTTGTCCCTATGTATGAA 57.633 37.500 0.00 0.00 0.00 2.57
2210 2248 5.056480 CCTATGTATGAATCCACGCTTGAA 58.944 41.667 0.00 0.00 0.00 2.69
2249 2287 1.066430 TCGGGAAGCACACCTTATGTC 60.066 52.381 0.00 0.00 40.64 3.06
2283 2321 8.932791 GCTTGCTGTTCTATAACAAGTAACTTA 58.067 33.333 0.00 0.00 44.79 2.24
2331 2371 7.932335 TGTTCACTCCGTTTTACAATTTACAT 58.068 30.769 0.00 0.00 0.00 2.29
2365 2405 5.178797 ACCGATCTAGGTGATTTTGTTCTG 58.821 41.667 0.00 0.00 44.07 3.02
2384 2425 4.018490 TCTGTTATCAGGCATGCACATTT 58.982 39.130 21.36 2.28 41.59 2.32
2446 2487 4.080015 ACAATACCTGCAGCCAATACCTTA 60.080 41.667 8.66 0.00 0.00 2.69
2487 2528 3.290710 ACAAGTTCCAACTGAGCAACAT 58.709 40.909 0.00 0.00 39.66 2.71
2595 2639 0.821711 TTTGTGCCTGCTACCGCTTT 60.822 50.000 0.00 0.00 36.97 3.51
2748 2792 7.011109 ACGAATTTATCCAGAAGGTACGATTTG 59.989 37.037 0.00 0.00 35.89 2.32
2749 2793 7.011109 CGAATTTATCCAGAAGGTACGATTTGT 59.989 37.037 0.00 0.00 35.89 2.83
2750 2794 7.787725 ATTTATCCAGAAGGTACGATTTGTC 57.212 36.000 0.00 0.00 35.89 3.18
2751 2795 3.226346 TCCAGAAGGTACGATTTGTCG 57.774 47.619 0.00 0.00 36.22 4.35
2752 2796 2.821378 TCCAGAAGGTACGATTTGTCGA 59.179 45.455 4.70 0.00 34.99 4.20
2753 2797 3.446161 TCCAGAAGGTACGATTTGTCGAT 59.554 43.478 4.70 0.00 34.99 3.59
2754 2798 4.081862 TCCAGAAGGTACGATTTGTCGATT 60.082 41.667 4.70 0.00 34.99 3.34
2755 2799 4.630069 CCAGAAGGTACGATTTGTCGATTT 59.370 41.667 4.70 0.00 36.85 2.17
2756 2800 5.121768 CCAGAAGGTACGATTTGTCGATTTT 59.878 40.000 4.70 0.00 36.85 1.82
2774 2818 8.859156 GTCGATTTTAAAATGCAGCTTATTTCA 58.141 29.630 17.98 0.00 0.00 2.69
2846 2890 4.083565 TCCCTGTTAGGTGCAAATAAACC 58.916 43.478 0.00 0.00 31.93 3.27
2883 2927 1.523711 CGCCACATCGCCTACCATT 60.524 57.895 0.00 0.00 0.00 3.16
2950 2994 1.629861 TCTGGTTCATGTCCATGCTCA 59.370 47.619 11.43 0.97 38.65 4.26
2966 3010 4.970662 TGCTCATTCCTTAATTCTGTGC 57.029 40.909 0.00 0.00 0.00 4.57
2990 3034 6.012658 TGATGCACTTAGGTTTGACAAATC 57.987 37.500 3.49 3.12 0.00 2.17
2993 3037 4.576873 TGCACTTAGGTTTGACAAATCGAA 59.423 37.500 3.49 5.27 0.00 3.71
3002 3050 7.216494 AGGTTTGACAAATCGAATTTTTGGAT 58.784 30.769 13.07 0.00 38.18 3.41
3015 3063 4.771590 TTTTTGGATGTCACATGCTCTC 57.228 40.909 10.99 0.00 0.00 3.20
3084 3133 7.615365 TCCCACTTCTGAATATGTTTTAAGCAT 59.385 33.333 0.00 0.00 0.00 3.79
3292 3341 2.357009 GACATGACCATGCACTGATTCC 59.643 50.000 9.70 0.00 42.39 3.01
3303 3352 2.821969 GCACTGATTCCACCAATGTTCT 59.178 45.455 0.00 0.00 0.00 3.01
3315 3364 4.706476 CACCAATGTTCTTGTATCCACCAT 59.294 41.667 0.00 0.00 0.00 3.55
3331 3380 5.914033 TCCACCATATGTAGCTAACTTGTC 58.086 41.667 0.00 0.00 0.00 3.18
3405 3455 2.366916 AGAATTGAGGATCTGGTAGCCG 59.633 50.000 0.00 0.00 39.29 5.52
3540 3591 3.258123 TGCTGATTAGTTGCCCTTTTTCC 59.742 43.478 0.00 0.00 0.00 3.13
3541 3592 3.258123 GCTGATTAGTTGCCCTTTTTCCA 59.742 43.478 0.00 0.00 0.00 3.53
3546 3597 6.495181 TGATTAGTTGCCCTTTTTCCACAATA 59.505 34.615 0.00 0.00 0.00 1.90
3548 3599 5.151297 AGTTGCCCTTTTTCCACAATATG 57.849 39.130 0.00 0.00 0.00 1.78
3600 3651 5.957798 ACATTTGTAATGGCAGTCATTCAG 58.042 37.500 2.71 0.00 44.32 3.02
3667 3718 6.179756 ACCATGTTATGTTGAAGTAGATGCA 58.820 36.000 0.00 0.00 0.00 3.96
3719 3770 5.703592 TCTTATTAATGCGTGGTGTTGAACT 59.296 36.000 0.00 0.00 0.00 3.01
3743 3794 8.993121 ACTAGACACTTGTAAAATCACTCAATG 58.007 33.333 0.00 0.00 0.00 2.82
3753 3804 8.243426 TGTAAAATCACTCAATGCCTTATGTTC 58.757 33.333 0.00 0.00 0.00 3.18
3816 3870 5.298989 TGTGTCTGCTTTTAGGAAACCTA 57.701 39.130 0.00 0.00 34.61 3.08
3823 3877 7.822822 GTCTGCTTTTAGGAAACCTACTGATAA 59.177 37.037 0.00 0.00 35.63 1.75
3832 3886 6.154706 AGGAAACCTACTGATAACGAGTCATT 59.845 38.462 0.00 0.00 28.47 2.57
3861 3915 5.655893 CACAAGGGCTTAAAACAATTGTG 57.344 39.130 12.82 0.00 39.80 3.33
3877 3931 0.753867 TGTGCCGACTCTTGTGGTTA 59.246 50.000 0.00 0.00 0.00 2.85
3878 3932 1.346395 TGTGCCGACTCTTGTGGTTAT 59.654 47.619 0.00 0.00 0.00 1.89
3890 3944 9.099454 GACTCTTGTGGTTATAACTTAATGAGG 57.901 37.037 15.05 3.57 0.00 3.86
3894 3948 8.927675 TTGTGGTTATAACTTAATGAGGTGTT 57.072 30.769 15.05 0.00 0.00 3.32
3896 3950 9.661563 TGTGGTTATAACTTAATGAGGTGTTAG 57.338 33.333 15.05 0.00 0.00 2.34
3898 3952 7.493320 TGGTTATAACTTAATGAGGTGTTAGCG 59.507 37.037 15.05 0.00 0.00 4.26
3899 3953 7.493645 GGTTATAACTTAATGAGGTGTTAGCGT 59.506 37.037 15.05 0.00 0.00 5.07
3900 3954 9.520204 GTTATAACTTAATGAGGTGTTAGCGTA 57.480 33.333 8.41 0.00 0.00 4.42
3908 3962 7.596749 AATGAGGTGTTAGCGTATATTATGC 57.403 36.000 0.00 0.00 40.97 3.14
3937 3991 9.376075 CTCTAGCATATACACAATAAATGGAGG 57.624 37.037 0.00 0.00 0.00 4.30
3949 4003 2.797177 AATGGAGGGAGCTTTGAGAC 57.203 50.000 0.00 0.00 0.00 3.36
3973 4028 6.863275 CCAGATGGTTCCCTTTGTAAATAAC 58.137 40.000 0.00 0.00 0.00 1.89
3975 4030 7.124147 CCAGATGGTTCCCTTTGTAAATAACAT 59.876 37.037 0.00 0.00 38.10 2.71
3976 4031 9.184523 CAGATGGTTCCCTTTGTAAATAACATA 57.815 33.333 0.00 0.00 38.10 2.29
3977 4032 9.936329 AGATGGTTCCCTTTGTAAATAACATAT 57.064 29.630 0.00 0.00 38.10 1.78
3999 4056 1.321805 TTGTGCACATATGGCAGGGC 61.322 55.000 22.39 8.34 42.85 5.19
4001 4058 0.179020 GTGCACATATGGCAGGGCTA 60.179 55.000 13.17 0.00 42.85 3.93
4025 4082 2.350895 CCGTGGCATTCAGGTGGA 59.649 61.111 0.00 0.00 0.00 4.02
4029 4086 1.673168 GTGGCATTCAGGTGGAGATC 58.327 55.000 0.00 0.00 0.00 2.75
4101 4158 4.230657 CGTTTCCAGGTCTGATCGATATC 58.769 47.826 0.00 0.00 0.00 1.63
4113 4170 5.139435 TGATCGATATCAGCACCTTAAGG 57.861 43.478 20.42 20.42 37.20 2.69
4142 4199 3.185246 ACCAGTAGATGAATCAAGCCG 57.815 47.619 0.00 0.00 0.00 5.52
4147 4204 1.099879 AGATGAATCAAGCCGCCTGC 61.100 55.000 0.00 0.00 41.71 4.85
4171 4228 4.003648 AGTATGTGAAAGGCAAGCACTAC 58.996 43.478 0.00 0.00 33.83 2.73
4218 4278 1.826385 AGCGCTGCTTGTTTATCCTT 58.174 45.000 10.39 0.00 33.89 3.36
4253 4313 9.765795 ACATATATTACTGGCTACTTTTGAGAC 57.234 33.333 0.00 0.00 0.00 3.36
4256 4318 3.409026 ACTGGCTACTTTTGAGACTGG 57.591 47.619 0.00 0.00 0.00 4.00
4276 4366 4.537751 TGGGTGTGGAAGTTATTTGAACA 58.462 39.130 0.00 0.00 0.00 3.18
4303 4394 9.448438 AAATGCTGTGTTCTGTCAGTTATATAA 57.552 29.630 0.00 0.00 34.57 0.98
4339 4647 0.477597 AAGGGAGGGGATGGTGTGAA 60.478 55.000 0.00 0.00 0.00 3.18
4340 4648 0.253820 AGGGAGGGGATGGTGTGAAT 60.254 55.000 0.00 0.00 0.00 2.57
4344 4652 2.509964 GGAGGGGATGGTGTGAATAGTT 59.490 50.000 0.00 0.00 0.00 2.24
4347 4655 3.591527 AGGGGATGGTGTGAATAGTTTGA 59.408 43.478 0.00 0.00 0.00 2.69
4549 4857 8.712228 TGGAATGTACAGTGATGATATCTACT 57.288 34.615 0.00 3.47 0.00 2.57
4550 4858 8.797438 TGGAATGTACAGTGATGATATCTACTC 58.203 37.037 0.00 0.00 0.00 2.59
4551 4859 8.247562 GGAATGTACAGTGATGATATCTACTCC 58.752 40.741 0.00 0.00 0.00 3.85
4552 4860 7.710676 ATGTACAGTGATGATATCTACTCCC 57.289 40.000 0.33 0.00 0.00 4.30
4553 4861 6.853490 TGTACAGTGATGATATCTACTCCCT 58.147 40.000 3.98 0.00 0.00 4.20
4554 4862 6.943146 TGTACAGTGATGATATCTACTCCCTC 59.057 42.308 3.98 0.00 0.00 4.30
4555 4863 6.212840 ACAGTGATGATATCTACTCCCTCT 57.787 41.667 3.98 0.00 0.00 3.69
4556 4864 6.009589 ACAGTGATGATATCTACTCCCTCTG 58.990 44.000 3.98 8.99 0.00 3.35
4557 4865 6.009589 CAGTGATGATATCTACTCCCTCTGT 58.990 44.000 3.98 0.00 0.00 3.41
4558 4866 6.150976 CAGTGATGATATCTACTCCCTCTGTC 59.849 46.154 3.98 0.00 0.00 3.51
4559 4867 5.417580 GTGATGATATCTACTCCCTCTGTCC 59.582 48.000 3.98 0.00 0.00 4.02
4560 4868 4.390129 TGATATCTACTCCCTCTGTCCC 57.610 50.000 3.98 0.00 0.00 4.46
4561 4869 3.727391 TGATATCTACTCCCTCTGTCCCA 59.273 47.826 3.98 0.00 0.00 4.37
4562 4870 4.358310 TGATATCTACTCCCTCTGTCCCAT 59.642 45.833 3.98 0.00 0.00 4.00
4563 4871 5.555941 TGATATCTACTCCCTCTGTCCCATA 59.444 44.000 3.98 0.00 0.00 2.74
4564 4872 4.834406 ATCTACTCCCTCTGTCCCATAA 57.166 45.455 0.00 0.00 0.00 1.90
4565 4873 4.834406 TCTACTCCCTCTGTCCCATAAT 57.166 45.455 0.00 0.00 0.00 1.28
4566 4874 4.483950 TCTACTCCCTCTGTCCCATAATG 58.516 47.826 0.00 0.00 0.00 1.90
4567 4875 3.136641 ACTCCCTCTGTCCCATAATGT 57.863 47.619 0.00 0.00 0.00 2.71
4568 4876 4.280789 ACTCCCTCTGTCCCATAATGTA 57.719 45.455 0.00 0.00 0.00 2.29
4569 4877 4.631234 ACTCCCTCTGTCCCATAATGTAA 58.369 43.478 0.00 0.00 0.00 2.41
4570 4878 4.656112 ACTCCCTCTGTCCCATAATGTAAG 59.344 45.833 0.00 0.00 0.00 2.34
4571 4879 4.890988 TCCCTCTGTCCCATAATGTAAGA 58.109 43.478 0.00 0.00 0.00 2.10
4572 4880 4.654262 TCCCTCTGTCCCATAATGTAAGAC 59.346 45.833 0.00 0.00 0.00 3.01
4573 4881 4.501571 CCCTCTGTCCCATAATGTAAGACG 60.502 50.000 0.00 0.00 0.00 4.18
4574 4882 4.099573 CCTCTGTCCCATAATGTAAGACGT 59.900 45.833 0.00 0.00 0.00 4.34
4575 4883 5.395324 CCTCTGTCCCATAATGTAAGACGTT 60.395 44.000 0.00 0.00 0.00 3.99
4576 4884 6.045072 TCTGTCCCATAATGTAAGACGTTT 57.955 37.500 0.00 0.00 0.00 3.60
4577 4885 6.469410 TCTGTCCCATAATGTAAGACGTTTT 58.531 36.000 0.00 0.00 0.00 2.43
4578 4886 6.938030 TCTGTCCCATAATGTAAGACGTTTTT 59.062 34.615 0.00 0.00 0.00 1.94
4599 4907 4.875544 TTTGACACTTTGACACTAGTGC 57.124 40.909 22.90 15.35 44.34 4.40
4600 4908 3.535280 TGACACTTTGACACTAGTGCA 57.465 42.857 22.90 17.67 44.34 4.57
4601 4909 3.457234 TGACACTTTGACACTAGTGCAG 58.543 45.455 22.90 15.01 44.34 4.41
4602 4910 3.118775 TGACACTTTGACACTAGTGCAGT 60.119 43.478 22.90 15.62 44.34 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 6.597832 TCATTAAGGTAAAACCCAACCATG 57.402 37.500 0.00 0.00 39.75 3.66
25 26 6.603095 CAAGCATCCACAACTACTAAAGTTC 58.397 40.000 0.00 0.00 45.64 3.01
27 28 4.455877 GCAAGCATCCACAACTACTAAAGT 59.544 41.667 0.00 0.00 41.49 2.66
29 30 4.651778 AGCAAGCATCCACAACTACTAAA 58.348 39.130 0.00 0.00 0.00 1.85
40 41 1.908619 TGGAACTCTAGCAAGCATCCA 59.091 47.619 0.00 3.65 34.77 3.41
97 98 2.603021 TGAGGGAGAGGCATAAGCTAG 58.397 52.381 0.00 0.00 41.70 3.42
183 184 3.470709 AGCGAGTGTGGAATAATGATGG 58.529 45.455 0.00 0.00 0.00 3.51
249 250 7.609056 TCGGAGAGCTAAAACATAAAAGTAGT 58.391 34.615 0.00 0.00 0.00 2.73
320 321 3.040147 TGCTTCCAACTAGAAACGAGG 57.960 47.619 0.00 0.00 0.00 4.63
400 401 3.190439 ACCCACAAGGAGCTAAAGGTAT 58.810 45.455 0.00 0.00 39.89 2.73
460 461 2.111384 AGTGCAGGGAATCATCGTAGT 58.889 47.619 0.00 0.00 0.00 2.73
501 502 3.027292 GTGGTGAGCCGCGAAAAA 58.973 55.556 8.23 0.00 37.67 1.94
507 508 2.045926 AAGGATGTGGTGAGCCGC 60.046 61.111 0.00 0.00 45.23 6.53
508 509 0.606401 AACAAGGATGTGGTGAGCCG 60.606 55.000 0.00 0.00 40.46 5.52
509 510 1.620822 AAACAAGGATGTGGTGAGCC 58.379 50.000 0.00 0.00 40.46 4.70
510 511 3.068024 TCAAAAACAAGGATGTGGTGAGC 59.932 43.478 0.00 0.00 40.46 4.26
511 512 4.916983 TCAAAAACAAGGATGTGGTGAG 57.083 40.909 0.00 0.00 40.46 3.51
512 513 6.968263 TTATCAAAAACAAGGATGTGGTGA 57.032 33.333 0.00 0.00 40.46 4.02
513 514 9.874205 ATATTTATCAAAAACAAGGATGTGGTG 57.126 29.630 0.00 0.00 40.46 4.17
521 522 9.859427 TGCTCTGAATATTTATCAAAAACAAGG 57.141 29.630 0.00 0.00 0.00 3.61
545 546 1.001860 GATGGAGGGTCAGCTAGATGC 59.998 57.143 2.24 0.00 43.29 3.91
546 547 1.622811 GGATGGAGGGTCAGCTAGATG 59.377 57.143 0.24 0.24 0.00 2.90
547 548 1.484065 GGGATGGAGGGTCAGCTAGAT 60.484 57.143 0.00 0.00 0.00 1.98
548 549 0.105453 GGGATGGAGGGTCAGCTAGA 60.105 60.000 0.00 0.00 0.00 2.43
549 550 0.105246 AGGGATGGAGGGTCAGCTAG 60.105 60.000 0.00 0.00 0.00 3.42
550 551 0.105453 GAGGGATGGAGGGTCAGCTA 60.105 60.000 0.00 0.00 0.00 3.32
551 552 1.383803 GAGGGATGGAGGGTCAGCT 60.384 63.158 0.00 0.00 0.00 4.24
552 553 2.447714 GGAGGGATGGAGGGTCAGC 61.448 68.421 0.00 0.00 0.00 4.26
553 554 0.762461 GAGGAGGGATGGAGGGTCAG 60.762 65.000 0.00 0.00 0.00 3.51
554 555 1.314867 GAGGAGGGATGGAGGGTCA 59.685 63.158 0.00 0.00 0.00 4.02
555 556 1.834822 CGAGGAGGGATGGAGGGTC 60.835 68.421 0.00 0.00 0.00 4.46
556 557 2.283809 CGAGGAGGGATGGAGGGT 59.716 66.667 0.00 0.00 0.00 4.34
557 558 1.834822 GACGAGGAGGGATGGAGGG 60.835 68.421 0.00 0.00 0.00 4.30
558 559 1.834822 GGACGAGGAGGGATGGAGG 60.835 68.421 0.00 0.00 0.00 4.30
559 560 1.834822 GGGACGAGGAGGGATGGAG 60.835 68.421 0.00 0.00 0.00 3.86
560 561 2.282446 GGGACGAGGAGGGATGGA 59.718 66.667 0.00 0.00 0.00 3.41
561 562 2.041922 TGGGACGAGGAGGGATGG 60.042 66.667 0.00 0.00 0.00 3.51
562 563 0.470833 ATCTGGGACGAGGAGGGATG 60.471 60.000 0.00 0.00 0.00 3.51
563 564 0.178947 GATCTGGGACGAGGAGGGAT 60.179 60.000 0.00 0.00 0.00 3.85
564 565 1.230497 GATCTGGGACGAGGAGGGA 59.770 63.158 0.00 0.00 0.00 4.20
565 566 0.478942 TAGATCTGGGACGAGGAGGG 59.521 60.000 5.18 0.00 0.00 4.30
566 567 2.362717 GTTTAGATCTGGGACGAGGAGG 59.637 54.545 5.18 0.00 0.00 4.30
567 568 2.033550 CGTTTAGATCTGGGACGAGGAG 59.966 54.545 17.22 0.00 35.90 3.69
568 569 2.022195 CGTTTAGATCTGGGACGAGGA 58.978 52.381 17.22 0.00 35.90 3.71
569 570 1.067212 CCGTTTAGATCTGGGACGAGG 59.933 57.143 21.38 7.23 35.90 4.63
570 571 1.067212 CCCGTTTAGATCTGGGACGAG 59.933 57.143 21.38 10.28 44.88 4.18
571 572 1.108776 CCCGTTTAGATCTGGGACGA 58.891 55.000 21.38 0.00 44.88 4.20
572 573 0.822164 ACCCGTTTAGATCTGGGACG 59.178 55.000 20.09 17.80 44.88 4.79
573 574 1.202382 CGACCCGTTTAGATCTGGGAC 60.202 57.143 20.09 13.75 44.88 4.46
574 575 1.108776 CGACCCGTTTAGATCTGGGA 58.891 55.000 20.09 0.00 44.88 4.37
576 577 0.870307 CGCGACCCGTTTAGATCTGG 60.870 60.000 0.00 0.00 0.00 3.86
577 578 0.870307 CCGCGACCCGTTTAGATCTG 60.870 60.000 8.23 0.00 34.38 2.90
578 579 1.436336 CCGCGACCCGTTTAGATCT 59.564 57.895 8.23 0.00 34.38 2.75
579 580 2.235699 GCCGCGACCCGTTTAGATC 61.236 63.158 8.23 0.00 34.38 2.75
580 581 2.202837 GCCGCGACCCGTTTAGAT 60.203 61.111 8.23 0.00 34.38 1.98
581 582 4.440127 GGCCGCGACCCGTTTAGA 62.440 66.667 8.23 0.00 34.38 2.10
605 606 4.366267 TCCTCTCAGAGATAGCCCTTTTT 58.634 43.478 2.09 0.00 0.00 1.94
606 607 4.000928 TCCTCTCAGAGATAGCCCTTTT 57.999 45.455 2.09 0.00 0.00 2.27
607 608 3.697190 TCCTCTCAGAGATAGCCCTTT 57.303 47.619 2.09 0.00 0.00 3.11
608 609 3.575805 CTTCCTCTCAGAGATAGCCCTT 58.424 50.000 2.09 0.00 0.00 3.95
609 610 2.158325 CCTTCCTCTCAGAGATAGCCCT 60.158 54.545 2.09 0.00 0.00 5.19
610 611 2.247358 CCTTCCTCTCAGAGATAGCCC 58.753 57.143 2.09 0.00 0.00 5.19
611 612 1.618343 GCCTTCCTCTCAGAGATAGCC 59.382 57.143 2.09 0.00 0.00 3.93
612 613 1.618343 GGCCTTCCTCTCAGAGATAGC 59.382 57.143 2.09 0.19 0.00 2.97
613 614 2.158325 AGGGCCTTCCTCTCAGAGATAG 60.158 54.545 2.09 0.00 44.06 2.08
614 615 1.862911 AGGGCCTTCCTCTCAGAGATA 59.137 52.381 2.09 0.00 44.06 1.98
615 616 0.641601 AGGGCCTTCCTCTCAGAGAT 59.358 55.000 2.09 0.00 44.06 2.75
616 617 2.100675 AGGGCCTTCCTCTCAGAGA 58.899 57.895 2.09 0.00 44.06 3.10
617 618 4.805132 AGGGCCTTCCTCTCAGAG 57.195 61.111 0.00 0.00 44.06 3.35
625 626 0.679505 GTTTGGTTTGAGGGCCTTCC 59.320 55.000 13.07 9.20 0.00 3.46
626 627 1.068588 GTGTTTGGTTTGAGGGCCTTC 59.931 52.381 7.89 8.18 0.00 3.46
627 628 1.119684 GTGTTTGGTTTGAGGGCCTT 58.880 50.000 7.89 0.00 0.00 4.35
628 629 0.032615 TGTGTTTGGTTTGAGGGCCT 60.033 50.000 5.25 5.25 0.00 5.19
629 630 1.000843 GATGTGTTTGGTTTGAGGGCC 59.999 52.381 0.00 0.00 0.00 5.80
630 631 1.000843 GGATGTGTTTGGTTTGAGGGC 59.999 52.381 0.00 0.00 0.00 5.19
631 632 2.315176 TGGATGTGTTTGGTTTGAGGG 58.685 47.619 0.00 0.00 0.00 4.30
632 633 4.766891 AGTATGGATGTGTTTGGTTTGAGG 59.233 41.667 0.00 0.00 0.00 3.86
633 634 5.106157 GGAGTATGGATGTGTTTGGTTTGAG 60.106 44.000 0.00 0.00 0.00 3.02
634 635 4.764823 GGAGTATGGATGTGTTTGGTTTGA 59.235 41.667 0.00 0.00 0.00 2.69
635 636 4.082245 GGGAGTATGGATGTGTTTGGTTTG 60.082 45.833 0.00 0.00 0.00 2.93
636 637 4.086457 GGGAGTATGGATGTGTTTGGTTT 58.914 43.478 0.00 0.00 0.00 3.27
637 638 3.333680 AGGGAGTATGGATGTGTTTGGTT 59.666 43.478 0.00 0.00 0.00 3.67
638 639 2.919602 AGGGAGTATGGATGTGTTTGGT 59.080 45.455 0.00 0.00 0.00 3.67
639 640 3.652057 AGGGAGTATGGATGTGTTTGG 57.348 47.619 0.00 0.00 0.00 3.28
640 641 3.623060 CGAAGGGAGTATGGATGTGTTTG 59.377 47.826 0.00 0.00 0.00 2.93
641 642 3.263425 ACGAAGGGAGTATGGATGTGTTT 59.737 43.478 0.00 0.00 0.00 2.83
642 643 2.838202 ACGAAGGGAGTATGGATGTGTT 59.162 45.455 0.00 0.00 0.00 3.32
643 644 2.467880 ACGAAGGGAGTATGGATGTGT 58.532 47.619 0.00 0.00 0.00 3.72
644 645 3.458189 GAACGAAGGGAGTATGGATGTG 58.542 50.000 0.00 0.00 0.00 3.21
645 646 2.434702 GGAACGAAGGGAGTATGGATGT 59.565 50.000 0.00 0.00 0.00 3.06
646 647 2.434336 TGGAACGAAGGGAGTATGGATG 59.566 50.000 0.00 0.00 0.00 3.51
647 648 2.759355 TGGAACGAAGGGAGTATGGAT 58.241 47.619 0.00 0.00 0.00 3.41
648 649 2.241281 TGGAACGAAGGGAGTATGGA 57.759 50.000 0.00 0.00 0.00 3.41
649 650 3.343941 TTTGGAACGAAGGGAGTATGG 57.656 47.619 0.00 0.00 0.00 2.74
650 651 6.113411 AGTAATTTGGAACGAAGGGAGTATG 58.887 40.000 0.00 0.00 0.00 2.39
651 652 6.309389 AGTAATTTGGAACGAAGGGAGTAT 57.691 37.500 0.00 0.00 0.00 2.12
652 653 5.622914 CGAGTAATTTGGAACGAAGGGAGTA 60.623 44.000 0.00 0.00 0.00 2.59
653 654 4.576879 GAGTAATTTGGAACGAAGGGAGT 58.423 43.478 0.00 0.00 0.00 3.85
654 655 3.617263 CGAGTAATTTGGAACGAAGGGAG 59.383 47.826 0.00 0.00 0.00 4.30
655 656 3.592059 CGAGTAATTTGGAACGAAGGGA 58.408 45.455 0.00 0.00 0.00 4.20
656 657 2.095372 GCGAGTAATTTGGAACGAAGGG 59.905 50.000 0.00 0.00 0.00 3.95
657 658 2.095372 GGCGAGTAATTTGGAACGAAGG 59.905 50.000 0.00 0.00 0.00 3.46
658 659 2.222729 CGGCGAGTAATTTGGAACGAAG 60.223 50.000 0.00 0.00 0.00 3.79
659 660 1.727880 CGGCGAGTAATTTGGAACGAA 59.272 47.619 0.00 0.00 0.00 3.85
660 661 1.352114 CGGCGAGTAATTTGGAACGA 58.648 50.000 0.00 0.00 0.00 3.85
661 662 0.247537 GCGGCGAGTAATTTGGAACG 60.248 55.000 12.98 0.00 0.00 3.95
662 663 0.247537 CGCGGCGAGTAATTTGGAAC 60.248 55.000 19.16 0.00 0.00 3.62
663 664 1.363145 CCGCGGCGAGTAATTTGGAA 61.363 55.000 25.92 0.00 0.00 3.53
664 665 1.812093 CCGCGGCGAGTAATTTGGA 60.812 57.895 25.92 0.00 0.00 3.53
665 666 2.032185 GACCGCGGCGAGTAATTTGG 62.032 60.000 28.58 5.92 0.00 3.28
666 667 1.347221 GACCGCGGCGAGTAATTTG 59.653 57.895 28.58 6.71 0.00 2.32
667 668 1.079681 TGACCGCGGCGAGTAATTT 60.080 52.632 28.58 0.57 0.00 1.82
668 669 1.808390 GTGACCGCGGCGAGTAATT 60.808 57.895 28.58 1.54 0.00 1.40
669 670 2.202703 GTGACCGCGGCGAGTAAT 60.203 61.111 28.58 2.52 0.00 1.89
670 671 3.210223 TTGTGACCGCGGCGAGTAA 62.210 57.895 28.58 11.79 0.00 2.24
671 672 3.672447 TTGTGACCGCGGCGAGTA 61.672 61.111 28.58 5.24 0.00 2.59
676 677 3.902162 TACTCGTTGTGACCGCGGC 62.902 63.158 28.58 19.01 0.00 6.53
677 678 0.734942 ATTACTCGTTGTGACCGCGG 60.735 55.000 26.86 26.86 0.00 6.46
678 679 1.065358 AATTACTCGTTGTGACCGCG 58.935 50.000 0.00 0.00 0.00 6.46
679 680 2.412325 CCAAATTACTCGTTGTGACCGC 60.412 50.000 0.00 0.00 0.00 5.68
680 681 3.061322 TCCAAATTACTCGTTGTGACCG 58.939 45.455 0.00 0.00 0.00 4.79
681 682 4.609783 CGTTCCAAATTACTCGTTGTGACC 60.610 45.833 0.00 0.00 0.00 4.02
682 683 4.025480 ACGTTCCAAATTACTCGTTGTGAC 60.025 41.667 0.00 0.00 0.00 3.67
683 684 4.121317 ACGTTCCAAATTACTCGTTGTGA 58.879 39.130 0.00 0.00 0.00 3.58
684 685 4.461992 ACGTTCCAAATTACTCGTTGTG 57.538 40.909 0.00 0.00 0.00 3.33
685 686 4.687483 CCTACGTTCCAAATTACTCGTTGT 59.313 41.667 0.00 0.00 33.70 3.32
686 687 4.092383 CCCTACGTTCCAAATTACTCGTTG 59.908 45.833 0.00 0.00 33.70 4.10
687 688 4.021192 TCCCTACGTTCCAAATTACTCGTT 60.021 41.667 0.00 0.00 33.70 3.85
688 689 3.511146 TCCCTACGTTCCAAATTACTCGT 59.489 43.478 0.00 0.00 35.73 4.18
689 690 4.110482 CTCCCTACGTTCCAAATTACTCG 58.890 47.826 0.00 0.00 0.00 4.18
690 691 5.082251 ACTCCCTACGTTCCAAATTACTC 57.918 43.478 0.00 0.00 0.00 2.59
691 692 5.718607 ACTACTCCCTACGTTCCAAATTACT 59.281 40.000 0.00 0.00 0.00 2.24
692 693 5.970592 ACTACTCCCTACGTTCCAAATTAC 58.029 41.667 0.00 0.00 0.00 1.89
693 694 6.610075 AACTACTCCCTACGTTCCAAATTA 57.390 37.500 0.00 0.00 0.00 1.40
694 695 5.485620 GAACTACTCCCTACGTTCCAAATT 58.514 41.667 0.00 0.00 31.89 1.82
695 696 4.381292 CGAACTACTCCCTACGTTCCAAAT 60.381 45.833 0.00 0.00 33.92 2.32
696 697 3.057315 CGAACTACTCCCTACGTTCCAAA 60.057 47.826 0.00 0.00 33.92 3.28
697 698 2.489329 CGAACTACTCCCTACGTTCCAA 59.511 50.000 0.00 0.00 33.92 3.53
698 699 2.086869 CGAACTACTCCCTACGTTCCA 58.913 52.381 0.00 0.00 33.92 3.53
699 700 1.202234 GCGAACTACTCCCTACGTTCC 60.202 57.143 0.00 0.00 33.92 3.62
700 701 1.470098 TGCGAACTACTCCCTACGTTC 59.530 52.381 0.00 0.00 34.07 3.95
701 702 1.538047 TGCGAACTACTCCCTACGTT 58.462 50.000 0.00 0.00 0.00 3.99
702 703 1.760192 ATGCGAACTACTCCCTACGT 58.240 50.000 0.00 0.00 0.00 3.57
703 704 3.501062 TGATATGCGAACTACTCCCTACG 59.499 47.826 0.00 0.00 0.00 3.51
704 705 5.009811 ACTTGATATGCGAACTACTCCCTAC 59.990 44.000 0.00 0.00 0.00 3.18
705 706 5.138276 ACTTGATATGCGAACTACTCCCTA 58.862 41.667 0.00 0.00 0.00 3.53
706 707 3.961408 ACTTGATATGCGAACTACTCCCT 59.039 43.478 0.00 0.00 0.00 4.20
707 708 4.323553 ACTTGATATGCGAACTACTCCC 57.676 45.455 0.00 0.00 0.00 4.30
708 709 5.581085 ACAAACTTGATATGCGAACTACTCC 59.419 40.000 0.00 0.00 0.00 3.85
709 710 6.531948 AGACAAACTTGATATGCGAACTACTC 59.468 38.462 0.00 0.00 0.00 2.59
710 711 6.398918 AGACAAACTTGATATGCGAACTACT 58.601 36.000 0.00 0.00 0.00 2.57
711 712 6.310467 TGAGACAAACTTGATATGCGAACTAC 59.690 38.462 0.00 0.00 0.00 2.73
712 713 6.310467 GTGAGACAAACTTGATATGCGAACTA 59.690 38.462 0.00 0.00 0.00 2.24
713 714 5.120830 GTGAGACAAACTTGATATGCGAACT 59.879 40.000 0.00 0.00 0.00 3.01
714 715 5.316770 GTGAGACAAACTTGATATGCGAAC 58.683 41.667 0.00 0.00 0.00 3.95
715 716 4.091365 CGTGAGACAAACTTGATATGCGAA 59.909 41.667 0.00 0.00 0.00 4.70
716 717 3.612423 CGTGAGACAAACTTGATATGCGA 59.388 43.478 0.00 0.00 0.00 5.10
717 718 3.367932 ACGTGAGACAAACTTGATATGCG 59.632 43.478 0.00 0.00 0.00 4.73
718 719 4.388773 TGACGTGAGACAAACTTGATATGC 59.611 41.667 0.00 0.00 31.75 3.14
719 720 6.466308 TTGACGTGAGACAAACTTGATATG 57.534 37.500 0.00 0.00 42.36 1.78
744 745 2.249844 TTCTGGTCGAAGTGGGAAAC 57.750 50.000 0.00 0.00 0.00 2.78
806 811 8.382130 CAACGCCAACTTATTATAACGAGTTTA 58.618 33.333 10.90 0.00 30.41 2.01
810 815 6.340537 ACAACGCCAACTTATTATAACGAG 57.659 37.500 0.00 0.00 0.00 4.18
816 821 9.344772 TGGATATTTACAACGCCAACTTATTAT 57.655 29.630 0.00 0.00 0.00 1.28
817 822 8.734218 TGGATATTTACAACGCCAACTTATTA 57.266 30.769 0.00 0.00 0.00 0.98
856 866 6.830838 TGGGTCATAAAAAGTTTGGCAAAAAT 59.169 30.769 15.29 3.54 0.00 1.82
863 873 6.155475 TGTCTTGGGTCATAAAAAGTTTGG 57.845 37.500 0.00 0.00 0.00 3.28
867 877 6.783708 TGTTTGTCTTGGGTCATAAAAAGT 57.216 33.333 0.00 0.00 0.00 2.66
872 882 7.201661 GCGTATTATGTTTGTCTTGGGTCATAA 60.202 37.037 0.00 0.00 34.08 1.90
874 884 5.065988 GCGTATTATGTTTGTCTTGGGTCAT 59.934 40.000 0.00 0.00 0.00 3.06
876 886 4.493545 CGCGTATTATGTTTGTCTTGGGTC 60.494 45.833 0.00 0.00 0.00 4.46
877 887 3.372822 CGCGTATTATGTTTGTCTTGGGT 59.627 43.478 0.00 0.00 0.00 4.51
878 888 3.242608 CCGCGTATTATGTTTGTCTTGGG 60.243 47.826 4.92 0.00 0.00 4.12
879 889 3.619483 TCCGCGTATTATGTTTGTCTTGG 59.381 43.478 4.92 0.00 0.00 3.61
880 890 4.328983 ACTCCGCGTATTATGTTTGTCTTG 59.671 41.667 4.92 0.00 0.00 3.02
886 896 6.101332 TCACTTTACTCCGCGTATTATGTTT 58.899 36.000 4.92 0.00 0.00 2.83
903 913 3.593942 TCACTCCCTCCCTTTCACTTTA 58.406 45.455 0.00 0.00 0.00 1.85
908 918 1.555075 CGAATCACTCCCTCCCTTTCA 59.445 52.381 0.00 0.00 0.00 2.69
913 923 1.069358 GACATCGAATCACTCCCTCCC 59.931 57.143 0.00 0.00 0.00 4.30
956 966 1.310216 CCGAATTTGGAACCGGGACC 61.310 60.000 6.32 9.52 38.42 4.46
964 974 3.246416 TCTTTTCCCCCGAATTTGGAA 57.754 42.857 13.85 4.62 36.40 3.53
1025 1035 1.347062 GTTTTTGATTGGGGGCCAGA 58.653 50.000 4.39 0.00 33.81 3.86
1026 1036 0.324614 GGTTTTTGATTGGGGGCCAG 59.675 55.000 4.39 0.00 33.81 4.85
1034 1044 7.951565 GCTTTTTATGACGATGGTTTTTGATTG 59.048 33.333 0.00 0.00 0.00 2.67
1044 1054 2.654863 AGGGGCTTTTTATGACGATGG 58.345 47.619 0.00 0.00 0.00 3.51
1058 1069 1.069775 TCTTCGGGTTAAAAGGGGCT 58.930 50.000 0.00 0.00 0.00 5.19
1080 1091 2.272918 CTGACTTCGACGGAGGAGGC 62.273 65.000 8.30 0.00 0.00 4.70
1146 1157 4.147449 TGCTGGTCGGAGATGGCG 62.147 66.667 0.00 0.00 40.67 5.69
1248 1259 2.301738 GGAGGGTTGGGGAGACAGG 61.302 68.421 0.00 0.00 0.00 4.00
1251 1262 1.996187 GGAGGAGGGTTGGGGAGAC 60.996 68.421 0.00 0.00 0.00 3.36
1311 1322 3.371097 ATCATGGCCGCGTTCGTCT 62.371 57.895 4.92 0.00 0.00 4.18
1473 1484 2.883026 AGTAGAATCGAGATGAGGGGG 58.117 52.381 0.00 0.00 0.00 5.40
1650 1671 4.023193 GTGTAATGCCACTAGTGCTGTTTT 60.023 41.667 17.86 8.33 32.50 2.43
1654 1675 2.674852 CAGTGTAATGCCACTAGTGCTG 59.325 50.000 17.86 12.10 43.70 4.41
1664 1685 2.363788 TGACTCGTCAGTGTAATGCC 57.636 50.000 0.00 0.00 34.14 4.40
1665 1686 3.318017 ACTTGACTCGTCAGTGTAATGC 58.682 45.455 0.00 0.00 41.13 3.56
1678 1699 9.092876 CCTTCTTCATCTGTAATTACTTGACTC 57.907 37.037 16.33 0.00 0.00 3.36
1687 1708 8.868522 TGTCAAATCCTTCTTCATCTGTAATT 57.131 30.769 0.00 0.00 0.00 1.40
1837 1858 4.803908 GGCAAGGCGGAGGGGAAG 62.804 72.222 0.00 0.00 0.00 3.46
1948 1970 0.520404 CCAGCAGCAAGTGACATCAC 59.480 55.000 3.72 3.72 46.77 3.06
1959 1981 4.706476 AGCAAGTAAATTAATCCAGCAGCA 59.294 37.500 0.00 0.00 0.00 4.41
1990 2012 1.396996 CACAAGATTAGAAACGGGCCG 59.603 52.381 27.06 27.06 0.00 6.13
1995 2017 3.498397 ACAGCACCACAAGATTAGAAACG 59.502 43.478 0.00 0.00 0.00 3.60
2108 2146 2.173782 TGTAAGCTTGGAGTTCACCCAA 59.826 45.455 9.86 0.00 41.04 4.12
2129 2167 1.830477 GGATCACCAGCAGAAGTCTCT 59.170 52.381 0.00 0.00 35.97 3.10
2168 2206 8.319057 ACATAGGGACAACACTGAATCTATAA 57.681 34.615 0.00 0.00 0.00 0.98
2198 2236 0.678048 GAAGGCCTTCAAGCGTGGAT 60.678 55.000 35.71 2.26 39.31 3.41
2210 2248 2.305009 GAATATGCTGCTTGAAGGCCT 58.695 47.619 0.00 0.00 0.00 5.19
2249 2287 4.978083 ATAGAACAGCAAGCCATCTTTG 57.022 40.909 0.00 0.00 0.00 2.77
2331 2371 5.128663 TCACCTAGATCGGTCAATTCAATGA 59.871 40.000 0.00 0.00 34.29 2.57
2365 2405 4.746729 TGAAAATGTGCATGCCTGATAAC 58.253 39.130 16.68 5.90 0.00 1.89
2384 2425 1.547675 GGGGTGTGATTCCAGCTTGAA 60.548 52.381 2.25 2.25 33.43 2.69
2446 2487 2.492484 GTCCCTCGCTATCCGTATCAAT 59.508 50.000 0.00 0.00 38.35 2.57
2501 2542 9.729023 CTACAACATGAACAGAATAGTAGAGAG 57.271 37.037 0.00 0.00 30.72 3.20
2508 2549 5.807520 AGTCGCTACAACATGAACAGAATAG 59.192 40.000 0.00 0.00 0.00 1.73
2563 2604 4.024977 GCAGGCACAAAACATACCAAAAAG 60.025 41.667 0.00 0.00 0.00 2.27
2573 2614 1.791103 GCGGTAGCAGGCACAAAACA 61.791 55.000 0.00 0.00 44.35 2.83
2574 2615 1.081442 GCGGTAGCAGGCACAAAAC 60.081 57.895 0.00 0.00 44.35 2.43
2595 2639 8.980596 TCGGTAAAACTATTAAGGGATGAAGTA 58.019 33.333 0.00 0.00 0.00 2.24
2619 2663 0.588252 CACAGGACAAAGCAAGGTCG 59.412 55.000 0.00 0.00 34.87 4.79
2748 2792 8.859156 TGAAATAAGCTGCATTTTAAAATCGAC 58.141 29.630 10.53 4.63 0.00 4.20
2749 2793 8.978564 TGAAATAAGCTGCATTTTAAAATCGA 57.021 26.923 10.53 0.00 0.00 3.59
2750 2794 9.464248 GTTGAAATAAGCTGCATTTTAAAATCG 57.536 29.630 10.53 7.94 0.00 3.34
2846 2890 4.161333 GGCGACACATTTGAAGAATTGAG 58.839 43.478 0.00 0.00 0.00 3.02
2883 2927 7.789202 ATAAGATGATGCTCTAAGCCTCTAA 57.211 36.000 5.94 0.00 41.51 2.10
2918 2962 8.219868 TGGACATGAACCAGATATTACAATCAT 58.780 33.333 0.00 0.00 33.22 2.45
2919 2963 7.572814 TGGACATGAACCAGATATTACAATCA 58.427 34.615 0.00 0.00 33.22 2.57
2920 2964 8.509690 CATGGACATGAACCAGATATTACAATC 58.490 37.037 17.70 0.00 41.20 2.67
2921 2965 7.040201 GCATGGACATGAACCAGATATTACAAT 60.040 37.037 15.99 0.18 41.20 2.71
2922 2966 6.262944 GCATGGACATGAACCAGATATTACAA 59.737 38.462 15.99 0.00 41.20 2.41
2923 2967 5.764686 GCATGGACATGAACCAGATATTACA 59.235 40.000 15.99 0.00 41.20 2.41
2924 2968 6.000219 AGCATGGACATGAACCAGATATTAC 59.000 40.000 15.99 0.00 41.20 1.89
2950 2994 5.511234 GCATCAGCACAGAATTAAGGAAT 57.489 39.130 0.00 0.00 41.58 3.01
2966 3010 5.437289 TTTGTCAAACCTAAGTGCATCAG 57.563 39.130 0.00 0.00 0.00 2.90
2990 3034 4.487948 AGCATGTGACATCCAAAAATTCG 58.512 39.130 0.00 0.00 0.00 3.34
2993 3037 5.014858 AGAGAGCATGTGACATCCAAAAAT 58.985 37.500 0.00 0.00 0.00 1.82
3002 3050 4.548451 AAATGAGAGAGAGCATGTGACA 57.452 40.909 0.00 0.00 0.00 3.58
3015 3063 4.521146 ACAGGAAGGCATGTAAATGAGAG 58.479 43.478 0.00 0.00 37.25 3.20
3084 3133 5.660460 AGCACGATCACATGAGTATGTTTA 58.340 37.500 0.00 0.00 45.01 2.01
3094 3143 2.406024 GCACAAAAAGCACGATCACATG 59.594 45.455 0.00 0.00 0.00 3.21
3144 3193 3.510388 TCATCTCTTACACTGAAGCGG 57.490 47.619 0.00 0.00 0.00 5.52
3216 3265 1.157585 GAGAACGGTTCAGCTTTCCC 58.842 55.000 21.86 0.00 0.00 3.97
3315 3364 7.601130 ACACAAAATCGACAAGTTAGCTACATA 59.399 33.333 0.00 0.00 0.00 2.29
3331 3380 4.862018 ACAAAACCTGAACACACAAAATCG 59.138 37.500 0.00 0.00 0.00 3.34
3600 3651 1.678101 GCACATGTATTTCCTCAGCCC 59.322 52.381 0.00 0.00 0.00 5.19
3667 3718 2.610833 GACGAACCTTGGTCTCGTTTTT 59.389 45.455 21.28 7.62 45.25 1.94
3719 3770 7.094805 GGCATTGAGTGATTTTACAAGTGTCTA 60.095 37.037 0.00 0.00 0.00 2.59
3743 3794 0.108520 TCGTCCACGGAACATAAGGC 60.109 55.000 0.00 0.00 40.29 4.35
3753 3804 2.666508 CTGTACTGAAATTCGTCCACGG 59.333 50.000 0.00 0.00 40.29 4.94
3816 3870 7.439955 TGTGTAAAACAATGACTCGTTATCAGT 59.560 33.333 0.00 0.00 35.24 3.41
3823 3877 4.274950 CCCTTGTGTAAAACAATGACTCGT 59.725 41.667 0.00 0.00 44.97 4.18
3832 3886 6.282199 TGTTTTAAGCCCTTGTGTAAAACA 57.718 33.333 13.66 13.66 46.37 2.83
3850 3904 3.130340 ACAAGAGTCGGCACAATTGTTTT 59.870 39.130 8.77 0.00 0.00 2.43
3861 3915 3.858247 AGTTATAACCACAAGAGTCGGC 58.142 45.455 12.05 0.00 0.00 5.54
3890 3944 5.864474 AGAGCAGCATAATATACGCTAACAC 59.136 40.000 0.00 0.00 33.82 3.32
3910 3964 8.777865 TCCATTTATTGTGTATATGCTAGAGC 57.222 34.615 0.00 0.00 42.50 4.09
3911 3965 9.376075 CCTCCATTTATTGTGTATATGCTAGAG 57.624 37.037 0.00 0.00 0.00 2.43
3912 3966 8.321353 CCCTCCATTTATTGTGTATATGCTAGA 58.679 37.037 0.00 0.00 0.00 2.43
3913 3967 8.321353 TCCCTCCATTTATTGTGTATATGCTAG 58.679 37.037 0.00 0.00 0.00 3.42
3914 3968 8.213489 TCCCTCCATTTATTGTGTATATGCTA 57.787 34.615 0.00 0.00 0.00 3.49
3915 3969 7.090319 TCCCTCCATTTATTGTGTATATGCT 57.910 36.000 0.00 0.00 0.00 3.79
3916 3970 6.127897 GCTCCCTCCATTTATTGTGTATATGC 60.128 42.308 0.00 0.00 0.00 3.14
3917 3971 7.170965 AGCTCCCTCCATTTATTGTGTATATG 58.829 38.462 0.00 0.00 0.00 1.78
3919 3973 6.763715 AGCTCCCTCCATTTATTGTGTATA 57.236 37.500 0.00 0.00 0.00 1.47
3921 3975 5.450818 AAGCTCCCTCCATTTATTGTGTA 57.549 39.130 0.00 0.00 0.00 2.90
3923 3977 4.706476 TCAAAGCTCCCTCCATTTATTGTG 59.294 41.667 0.00 0.00 0.00 3.33
3924 3978 4.934356 TCAAAGCTCCCTCCATTTATTGT 58.066 39.130 0.00 0.00 0.00 2.71
3925 3979 5.067023 GTCTCAAAGCTCCCTCCATTTATTG 59.933 44.000 0.00 0.00 0.00 1.90
3926 3980 5.196695 GTCTCAAAGCTCCCTCCATTTATT 58.803 41.667 0.00 0.00 0.00 1.40
3927 3981 4.385754 GGTCTCAAAGCTCCCTCCATTTAT 60.386 45.833 0.00 0.00 0.00 1.40
3928 3982 3.054361 GGTCTCAAAGCTCCCTCCATTTA 60.054 47.826 0.00 0.00 0.00 1.40
3929 3983 2.291217 GGTCTCAAAGCTCCCTCCATTT 60.291 50.000 0.00 0.00 0.00 2.32
3930 3984 1.283321 GGTCTCAAAGCTCCCTCCATT 59.717 52.381 0.00 0.00 0.00 3.16
3931 3985 0.915364 GGTCTCAAAGCTCCCTCCAT 59.085 55.000 0.00 0.00 0.00 3.41
3932 3986 0.473694 TGGTCTCAAAGCTCCCTCCA 60.474 55.000 0.00 0.00 0.00 3.86
3933 3987 0.251634 CTGGTCTCAAAGCTCCCTCC 59.748 60.000 0.00 0.00 0.00 4.30
3934 3988 1.270907 TCTGGTCTCAAAGCTCCCTC 58.729 55.000 0.00 0.00 0.00 4.30
3937 3991 2.035530 CCATCTGGTCTCAAAGCTCC 57.964 55.000 0.00 0.00 0.00 4.70
3949 4003 6.435904 TGTTATTTACAAAGGGAACCATCTGG 59.564 38.462 0.00 0.00 43.15 3.86
3973 4028 4.934515 TGCCATATGTGCACAACAATATG 58.065 39.130 25.72 23.87 43.61 1.78
3975 4030 3.380954 CCTGCCATATGTGCACAACAATA 59.619 43.478 25.72 12.17 43.61 1.90
3976 4031 2.166870 CCTGCCATATGTGCACAACAAT 59.833 45.455 25.72 14.74 43.61 2.71
3977 4032 1.545136 CCTGCCATATGTGCACAACAA 59.455 47.619 25.72 12.96 43.61 2.83
3978 4033 1.175654 CCTGCCATATGTGCACAACA 58.824 50.000 25.72 15.35 44.79 3.33
3979 4034 0.457035 CCCTGCCATATGTGCACAAC 59.543 55.000 25.72 11.52 34.46 3.32
3999 4056 1.766143 GAATGCCACGGCGAGCTTAG 61.766 60.000 16.62 0.00 45.51 2.18
4001 4058 3.127533 GAATGCCACGGCGAGCTT 61.128 61.111 16.62 11.56 45.51 3.74
4009 4066 0.107508 ATCTCCACCTGAATGCCACG 60.108 55.000 0.00 0.00 0.00 4.94
4025 4082 1.269723 TCACGTCGTTTGCTCAGATCT 59.730 47.619 0.00 0.00 0.00 2.75
4029 4086 0.439985 CCATCACGTCGTTTGCTCAG 59.560 55.000 0.00 0.00 0.00 3.35
4101 4158 0.895100 TTGCAGGCCTTAAGGTGCTG 60.895 55.000 27.94 14.54 37.87 4.41
4109 4166 2.373836 TCTACTGGTTTTGCAGGCCTTA 59.626 45.455 0.00 0.00 0.00 2.69
4113 4170 2.436417 TCATCTACTGGTTTTGCAGGC 58.564 47.619 0.00 0.00 0.00 4.85
4142 4199 1.009829 CCTTTCACATACTCGCAGGC 58.990 55.000 0.00 0.00 0.00 4.85
4147 4204 2.076100 TGCTTGCCTTTCACATACTCG 58.924 47.619 0.00 0.00 0.00 4.18
4171 4228 0.306840 TAAGCTGCGTCGTAGATCCG 59.693 55.000 14.97 0.00 40.67 4.18
4243 4303 1.843851 TCCACACCCAGTCTCAAAAGT 59.156 47.619 0.00 0.00 0.00 2.66
4253 4313 4.582656 TGTTCAAATAACTTCCACACCCAG 59.417 41.667 0.00 0.00 0.00 4.45
4256 4318 7.518211 GCATTTTGTTCAAATAACTTCCACACC 60.518 37.037 0.00 0.00 32.90 4.16
4276 4366 4.989279 AACTGACAGAACACAGCATTTT 57.011 36.364 10.08 0.00 37.61 1.82
4303 4394 6.267699 CCCTCCCTTGTTTAATTTCACTCTTT 59.732 38.462 0.00 0.00 0.00 2.52
4308 4399 4.412843 TCCCCTCCCTTGTTTAATTTCAC 58.587 43.478 0.00 0.00 0.00 3.18
4309 4400 4.750833 TCCCCTCCCTTGTTTAATTTCA 57.249 40.909 0.00 0.00 0.00 2.69
4310 4401 4.405680 CCATCCCCTCCCTTGTTTAATTTC 59.594 45.833 0.00 0.00 0.00 2.17
4311 4402 4.202890 ACCATCCCCTCCCTTGTTTAATTT 60.203 41.667 0.00 0.00 0.00 1.82
4312 4403 3.339742 ACCATCCCCTCCCTTGTTTAATT 59.660 43.478 0.00 0.00 0.00 1.40
4313 4404 2.933139 ACCATCCCCTCCCTTGTTTAAT 59.067 45.455 0.00 0.00 0.00 1.40
4339 4647 3.693085 CAGGTCAGCAGCAATCAAACTAT 59.307 43.478 0.00 0.00 0.00 2.12
4340 4648 3.076621 CAGGTCAGCAGCAATCAAACTA 58.923 45.455 0.00 0.00 0.00 2.24
4344 4652 0.537828 TGCAGGTCAGCAGCAATCAA 60.538 50.000 0.00 0.00 40.11 2.57
4576 4884 5.182190 TGCACTAGTGTCAAAGTGTCAAAAA 59.818 36.000 23.44 0.00 44.03 1.94
4577 4885 4.697828 TGCACTAGTGTCAAAGTGTCAAAA 59.302 37.500 23.44 0.00 44.03 2.44
4578 4886 4.257731 TGCACTAGTGTCAAAGTGTCAAA 58.742 39.130 23.44 0.00 44.03 2.69
4579 4887 3.867857 TGCACTAGTGTCAAAGTGTCAA 58.132 40.909 23.44 0.00 44.03 3.18
4580 4888 3.118775 ACTGCACTAGTGTCAAAGTGTCA 60.119 43.478 23.44 8.96 44.03 3.58
4581 4889 3.458189 ACTGCACTAGTGTCAAAGTGTC 58.542 45.455 23.44 4.72 44.03 3.67
4582 4890 3.543680 ACTGCACTAGTGTCAAAGTGT 57.456 42.857 23.44 12.58 44.03 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.