Multiple sequence alignment - TraesCS3D01G084100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G084100 chr3D 100.000 3464 0 0 1 3464 42688828 42685365 0.000000e+00 6397.0
1 TraesCS3D01G084100 chr3D 83.811 698 95 14 1632 2325 42679652 42678969 0.000000e+00 647.0
2 TraesCS3D01G084100 chr3D 75.319 705 138 23 1621 2308 92895867 92895182 4.340000e-79 305.0
3 TraesCS3D01G084100 chr3D 86.719 128 16 1 1343 1470 42679843 42679717 1.300000e-29 141.0
4 TraesCS3D01G084100 chr3D 74.897 243 45 12 449 681 92896913 92896677 2.850000e-16 97.1
5 TraesCS3D01G084100 chr3B 94.694 1847 85 6 1625 3464 66478351 66476511 0.000000e+00 2856.0
6 TraesCS3D01G084100 chr3B 95.627 1052 37 6 497 1546 66479412 66478368 0.000000e+00 1679.0
7 TraesCS3D01G084100 chr3B 94.036 503 27 3 1 503 66511283 66510784 0.000000e+00 760.0
8 TraesCS3D01G084100 chr3B 84.308 701 99 8 1632 2325 66470553 66469857 0.000000e+00 675.0
9 TraesCS3D01G084100 chr3B 76.454 705 129 23 1625 2308 143510165 143510853 7.120000e-92 348.0
10 TraesCS3D01G084100 chr3B 85.185 162 20 1 1313 1470 66470778 66470617 2.770000e-36 163.0
11 TraesCS3D01G084100 chr3B 86.538 104 13 1 618 720 66471650 66471547 2.830000e-21 113.0
12 TraesCS3D01G084100 chr3A 91.017 1436 78 14 1610 3017 54284673 54283261 0.000000e+00 1890.0
13 TraesCS3D01G084100 chr3A 84.392 756 73 23 813 1546 54285402 54284670 0.000000e+00 701.0
14 TraesCS3D01G084100 chr3A 84.296 675 99 7 1632 2302 54232681 54232010 0.000000e+00 652.0
15 TraesCS3D01G084100 chr3A 75.710 704 132 29 1627 2308 547182550 547183236 2.010000e-82 316.0
16 TraesCS3D01G084100 chr3A 73.878 245 47 12 449 682 547181499 547181737 7.970000e-12 82.4
17 TraesCS3D01G084100 chr7B 83.030 495 72 8 2948 3432 727082099 727081607 4.100000e-119 438.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G084100 chr3D 42685365 42688828 3463 True 6397.00 6397 100.000000 1 3464 1 chr3D.!!$R1 3463
1 TraesCS3D01G084100 chr3D 42678969 42679843 874 True 394.00 647 85.265000 1343 2325 2 chr3D.!!$R2 982
2 TraesCS3D01G084100 chr3D 92895182 92896913 1731 True 201.05 305 75.108000 449 2308 2 chr3D.!!$R3 1859
3 TraesCS3D01G084100 chr3B 66476511 66479412 2901 True 2267.50 2856 95.160500 497 3464 2 chr3B.!!$R3 2967
4 TraesCS3D01G084100 chr3B 143510165 143510853 688 False 348.00 348 76.454000 1625 2308 1 chr3B.!!$F1 683
5 TraesCS3D01G084100 chr3B 66469857 66471650 1793 True 317.00 675 85.343667 618 2325 3 chr3B.!!$R2 1707
6 TraesCS3D01G084100 chr3A 54283261 54285402 2141 True 1295.50 1890 87.704500 813 3017 2 chr3A.!!$R2 2204
7 TraesCS3D01G084100 chr3A 54232010 54232681 671 True 652.00 652 84.296000 1632 2302 1 chr3A.!!$R1 670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
84 85 0.034477 AATAAGAGGTGGGCCGGTTG 60.034 55.0 1.9 0.0 40.50 3.77 F
392 393 0.034670 GGAGCTGGTGCAAAGGAGAT 60.035 55.0 0.0 0.0 42.74 2.75 F
996 1134 0.179468 TAAGGGCCGTGGTCTAATGC 59.821 55.0 0.9 0.0 0.00 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1639 1933 0.609131 CACCTTGCTCGGGTTCCATT 60.609 55.0 0.0 0.0 34.44 3.16 R
1753 2047 0.609406 ACAGCTCGTACCTCTGCTCA 60.609 55.0 0.0 0.0 33.03 4.26 R
2565 2891 0.107752 GCTGCCTGGAGAAAGAGAGG 60.108 60.0 0.0 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.186021 ACACTTGTTTGGTAAGAACTAATCG 57.814 36.000 0.00 0.00 0.00 3.34
28 29 6.204108 ACACTTGTTTGGTAAGAACTAATCGG 59.796 38.462 0.00 0.00 0.00 4.18
29 30 5.180680 ACTTGTTTGGTAAGAACTAATCGGC 59.819 40.000 0.00 0.00 0.00 5.54
30 31 4.901868 TGTTTGGTAAGAACTAATCGGCT 58.098 39.130 0.00 0.00 0.00 5.52
31 32 5.310451 TGTTTGGTAAGAACTAATCGGCTT 58.690 37.500 0.00 0.00 0.00 4.35
32 33 6.465948 TGTTTGGTAAGAACTAATCGGCTTA 58.534 36.000 0.00 0.00 0.00 3.09
33 34 6.369615 TGTTTGGTAAGAACTAATCGGCTTAC 59.630 38.462 0.00 0.00 41.02 2.34
34 35 5.664294 TGGTAAGAACTAATCGGCTTACA 57.336 39.130 0.00 0.00 42.62 2.41
35 36 6.040209 TGGTAAGAACTAATCGGCTTACAA 57.960 37.500 0.00 0.00 42.62 2.41
36 37 6.465948 TGGTAAGAACTAATCGGCTTACAAA 58.534 36.000 0.00 0.00 42.62 2.83
37 38 6.935771 TGGTAAGAACTAATCGGCTTACAAAA 59.064 34.615 0.00 0.00 42.62 2.44
38 39 7.608761 TGGTAAGAACTAATCGGCTTACAAAAT 59.391 33.333 0.00 0.00 42.62 1.82
39 40 9.101655 GGTAAGAACTAATCGGCTTACAAAATA 57.898 33.333 0.00 0.00 42.62 1.40
79 80 5.937111 TGATAAGTAAATAAGAGGTGGGCC 58.063 41.667 0.00 0.00 0.00 5.80
80 81 3.277142 AAGTAAATAAGAGGTGGGCCG 57.723 47.619 0.00 0.00 40.50 6.13
81 82 1.489230 AGTAAATAAGAGGTGGGCCGG 59.511 52.381 0.00 0.00 40.50 6.13
82 83 1.211212 GTAAATAAGAGGTGGGCCGGT 59.789 52.381 1.90 0.00 40.50 5.28
83 84 0.702316 AAATAAGAGGTGGGCCGGTT 59.298 50.000 1.90 0.00 40.50 4.44
84 85 0.034477 AATAAGAGGTGGGCCGGTTG 60.034 55.000 1.90 0.00 40.50 3.77
85 86 0.912487 ATAAGAGGTGGGCCGGTTGA 60.912 55.000 1.90 0.00 40.50 3.18
86 87 1.550130 TAAGAGGTGGGCCGGTTGAG 61.550 60.000 1.90 0.00 40.50 3.02
87 88 3.637273 GAGGTGGGCCGGTTGAGT 61.637 66.667 1.90 0.00 40.50 3.41
88 89 3.175710 AGGTGGGCCGGTTGAGTT 61.176 61.111 1.90 0.00 40.50 3.01
89 90 2.983592 GGTGGGCCGGTTGAGTTG 60.984 66.667 1.90 0.00 0.00 3.16
90 91 2.983592 GTGGGCCGGTTGAGTTGG 60.984 66.667 1.90 0.00 0.00 3.77
91 92 3.494254 TGGGCCGGTTGAGTTGGT 61.494 61.111 1.90 0.00 0.00 3.67
92 93 2.203437 GGGCCGGTTGAGTTGGTT 60.203 61.111 1.90 0.00 0.00 3.67
93 94 1.830847 GGGCCGGTTGAGTTGGTTT 60.831 57.895 1.90 0.00 0.00 3.27
94 95 1.658114 GGCCGGTTGAGTTGGTTTC 59.342 57.895 1.90 0.00 0.00 2.78
95 96 1.658114 GCCGGTTGAGTTGGTTTCC 59.342 57.895 1.90 0.00 0.00 3.13
96 97 1.104577 GCCGGTTGAGTTGGTTTCCA 61.105 55.000 1.90 0.00 0.00 3.53
97 98 1.394618 CCGGTTGAGTTGGTTTCCAA 58.605 50.000 0.00 0.00 41.69 3.53
98 99 1.336755 CCGGTTGAGTTGGTTTCCAAG 59.663 52.381 1.16 0.00 44.82 3.61
99 100 2.294074 CGGTTGAGTTGGTTTCCAAGA 58.706 47.619 1.16 0.00 44.82 3.02
100 101 2.685897 CGGTTGAGTTGGTTTCCAAGAA 59.314 45.455 1.16 0.00 44.82 2.52
101 102 3.129638 CGGTTGAGTTGGTTTCCAAGAAA 59.870 43.478 1.16 0.00 44.82 2.52
102 103 4.381079 CGGTTGAGTTGGTTTCCAAGAAAA 60.381 41.667 1.16 0.00 44.82 2.29
103 104 5.483811 GGTTGAGTTGGTTTCCAAGAAAAA 58.516 37.500 1.16 0.00 44.82 1.94
131 132 3.570912 AAAAAGACCAAAGACGGGAGA 57.429 42.857 0.00 0.00 0.00 3.71
132 133 3.570912 AAAAGACCAAAGACGGGAGAA 57.429 42.857 0.00 0.00 0.00 2.87
133 134 3.570912 AAAGACCAAAGACGGGAGAAA 57.429 42.857 0.00 0.00 0.00 2.52
134 135 2.545537 AGACCAAAGACGGGAGAAAC 57.454 50.000 0.00 0.00 0.00 2.78
135 136 1.766496 AGACCAAAGACGGGAGAAACA 59.234 47.619 0.00 0.00 0.00 2.83
136 137 2.171870 AGACCAAAGACGGGAGAAACAA 59.828 45.455 0.00 0.00 0.00 2.83
137 138 2.946990 GACCAAAGACGGGAGAAACAAA 59.053 45.455 0.00 0.00 0.00 2.83
138 139 3.358118 ACCAAAGACGGGAGAAACAAAA 58.642 40.909 0.00 0.00 0.00 2.44
139 140 3.958147 ACCAAAGACGGGAGAAACAAAAT 59.042 39.130 0.00 0.00 0.00 1.82
140 141 4.037565 ACCAAAGACGGGAGAAACAAAATC 59.962 41.667 0.00 0.00 0.00 2.17
141 142 4.037446 CCAAAGACGGGAGAAACAAAATCA 59.963 41.667 0.00 0.00 0.00 2.57
142 143 5.451242 CCAAAGACGGGAGAAACAAAATCAA 60.451 40.000 0.00 0.00 0.00 2.57
143 144 5.438761 AAGACGGGAGAAACAAAATCAAG 57.561 39.130 0.00 0.00 0.00 3.02
144 145 4.714632 AGACGGGAGAAACAAAATCAAGA 58.285 39.130 0.00 0.00 0.00 3.02
145 146 5.130350 AGACGGGAGAAACAAAATCAAGAA 58.870 37.500 0.00 0.00 0.00 2.52
146 147 5.239525 AGACGGGAGAAACAAAATCAAGAAG 59.760 40.000 0.00 0.00 0.00 2.85
147 148 4.278419 ACGGGAGAAACAAAATCAAGAAGG 59.722 41.667 0.00 0.00 0.00 3.46
148 149 4.321230 CGGGAGAAACAAAATCAAGAAGGG 60.321 45.833 0.00 0.00 0.00 3.95
149 150 4.021104 GGGAGAAACAAAATCAAGAAGGGG 60.021 45.833 0.00 0.00 0.00 4.79
150 151 4.832823 GGAGAAACAAAATCAAGAAGGGGA 59.167 41.667 0.00 0.00 0.00 4.81
151 152 5.481824 GGAGAAACAAAATCAAGAAGGGGAT 59.518 40.000 0.00 0.00 0.00 3.85
152 153 6.663523 GGAGAAACAAAATCAAGAAGGGGATA 59.336 38.462 0.00 0.00 0.00 2.59
153 154 7.148000 GGAGAAACAAAATCAAGAAGGGGATAG 60.148 40.741 0.00 0.00 0.00 2.08
154 155 7.470192 AGAAACAAAATCAAGAAGGGGATAGA 58.530 34.615 0.00 0.00 0.00 1.98
155 156 7.613411 AGAAACAAAATCAAGAAGGGGATAGAG 59.387 37.037 0.00 0.00 0.00 2.43
156 157 5.760131 ACAAAATCAAGAAGGGGATAGAGG 58.240 41.667 0.00 0.00 0.00 3.69
157 158 5.492524 ACAAAATCAAGAAGGGGATAGAGGA 59.507 40.000 0.00 0.00 0.00 3.71
158 159 5.903198 AAATCAAGAAGGGGATAGAGGAG 57.097 43.478 0.00 0.00 0.00 3.69
159 160 4.841813 ATCAAGAAGGGGATAGAGGAGA 57.158 45.455 0.00 0.00 0.00 3.71
160 161 4.191804 TCAAGAAGGGGATAGAGGAGAG 57.808 50.000 0.00 0.00 0.00 3.20
161 162 3.116939 TCAAGAAGGGGATAGAGGAGAGG 60.117 52.174 0.00 0.00 0.00 3.69
162 163 2.808355 AGAAGGGGATAGAGGAGAGGA 58.192 52.381 0.00 0.00 0.00 3.71
163 164 2.721906 AGAAGGGGATAGAGGAGAGGAG 59.278 54.545 0.00 0.00 0.00 3.69
164 165 2.542257 AGGGGATAGAGGAGAGGAGA 57.458 55.000 0.00 0.00 0.00 3.71
165 166 2.808355 AGGGGATAGAGGAGAGGAGAA 58.192 52.381 0.00 0.00 0.00 2.87
166 167 2.449345 AGGGGATAGAGGAGAGGAGAAC 59.551 54.545 0.00 0.00 0.00 3.01
167 168 2.449345 GGGGATAGAGGAGAGGAGAACT 59.551 54.545 0.00 0.00 0.00 3.01
168 169 3.116900 GGGGATAGAGGAGAGGAGAACTT 60.117 52.174 0.00 0.00 0.00 2.66
169 170 4.106663 GGGGATAGAGGAGAGGAGAACTTA 59.893 50.000 0.00 0.00 0.00 2.24
170 171 5.400421 GGGGATAGAGGAGAGGAGAACTTAA 60.400 48.000 0.00 0.00 0.00 1.85
171 172 5.773176 GGGATAGAGGAGAGGAGAACTTAAG 59.227 48.000 0.00 0.00 0.00 1.85
172 173 6.370453 GGATAGAGGAGAGGAGAACTTAAGT 58.630 44.000 1.12 1.12 0.00 2.24
173 174 7.421617 GGGATAGAGGAGAGGAGAACTTAAGTA 60.422 44.444 8.92 0.00 0.00 2.24
174 175 8.000127 GGATAGAGGAGAGGAGAACTTAAGTAA 59.000 40.741 8.92 0.00 0.00 2.24
175 176 9.411189 GATAGAGGAGAGGAGAACTTAAGTAAA 57.589 37.037 8.92 0.00 0.00 2.01
176 177 9.771140 ATAGAGGAGAGGAGAACTTAAGTAAAA 57.229 33.333 8.92 0.00 0.00 1.52
177 178 8.673456 AGAGGAGAGGAGAACTTAAGTAAAAT 57.327 34.615 8.92 0.00 0.00 1.82
178 179 9.106977 AGAGGAGAGGAGAACTTAAGTAAAATT 57.893 33.333 8.92 0.00 0.00 1.82
179 180 9.157104 GAGGAGAGGAGAACTTAAGTAAAATTG 57.843 37.037 8.92 0.00 0.00 2.32
180 181 8.103935 AGGAGAGGAGAACTTAAGTAAAATTGG 58.896 37.037 8.92 0.00 0.00 3.16
181 182 8.101419 GGAGAGGAGAACTTAAGTAAAATTGGA 58.899 37.037 8.92 0.00 0.00 3.53
182 183 8.850007 AGAGGAGAACTTAAGTAAAATTGGAC 57.150 34.615 8.92 0.00 0.00 4.02
183 184 7.603024 AGAGGAGAACTTAAGTAAAATTGGACG 59.397 37.037 8.92 0.00 0.00 4.79
184 185 7.447594 AGGAGAACTTAAGTAAAATTGGACGA 58.552 34.615 8.92 0.00 0.00 4.20
185 186 8.101419 AGGAGAACTTAAGTAAAATTGGACGAT 58.899 33.333 8.92 0.00 0.00 3.73
186 187 8.175716 GGAGAACTTAAGTAAAATTGGACGATG 58.824 37.037 8.92 0.00 0.00 3.84
187 188 8.040716 AGAACTTAAGTAAAATTGGACGATGG 57.959 34.615 8.92 0.00 0.00 3.51
188 189 7.881232 AGAACTTAAGTAAAATTGGACGATGGA 59.119 33.333 8.92 0.00 0.00 3.41
189 190 8.575649 AACTTAAGTAAAATTGGACGATGGAT 57.424 30.769 8.92 0.00 0.00 3.41
190 191 7.985476 ACTTAAGTAAAATTGGACGATGGATG 58.015 34.615 6.26 0.00 0.00 3.51
191 192 7.827236 ACTTAAGTAAAATTGGACGATGGATGA 59.173 33.333 6.26 0.00 0.00 2.92
192 193 6.683974 AAGTAAAATTGGACGATGGATGAG 57.316 37.500 0.00 0.00 0.00 2.90
193 194 4.576463 AGTAAAATTGGACGATGGATGAGC 59.424 41.667 0.00 0.00 0.00 4.26
194 195 1.586422 AATTGGACGATGGATGAGCG 58.414 50.000 0.00 0.00 40.13 5.03
195 196 0.250038 ATTGGACGATGGATGAGCGG 60.250 55.000 0.00 0.00 37.96 5.52
196 197 1.326951 TTGGACGATGGATGAGCGGA 61.327 55.000 0.00 0.00 37.96 5.54
197 198 1.300233 GGACGATGGATGAGCGGAC 60.300 63.158 0.00 0.00 37.96 4.79
198 199 1.658717 GACGATGGATGAGCGGACG 60.659 63.158 0.00 0.00 37.96 4.79
199 200 2.060004 GACGATGGATGAGCGGACGA 62.060 60.000 0.00 0.00 37.96 4.20
200 201 1.658717 CGATGGATGAGCGGACGAC 60.659 63.158 0.00 0.00 0.00 4.34
201 202 1.437573 GATGGATGAGCGGACGACA 59.562 57.895 0.00 0.00 0.00 4.35
202 203 0.596083 GATGGATGAGCGGACGACAG 60.596 60.000 0.00 0.00 0.00 3.51
203 204 1.037579 ATGGATGAGCGGACGACAGA 61.038 55.000 0.00 0.00 0.00 3.41
204 205 1.248101 TGGATGAGCGGACGACAGAA 61.248 55.000 0.00 0.00 0.00 3.02
205 206 0.802607 GGATGAGCGGACGACAGAAC 60.803 60.000 0.00 0.00 0.00 3.01
206 207 0.802607 GATGAGCGGACGACAGAACC 60.803 60.000 0.00 0.00 0.00 3.62
207 208 1.251527 ATGAGCGGACGACAGAACCT 61.252 55.000 0.00 0.00 0.00 3.50
208 209 1.289380 GAGCGGACGACAGAACCTT 59.711 57.895 0.00 0.00 0.00 3.50
209 210 0.524862 GAGCGGACGACAGAACCTTA 59.475 55.000 0.00 0.00 0.00 2.69
210 211 1.134560 GAGCGGACGACAGAACCTTAT 59.865 52.381 0.00 0.00 0.00 1.73
211 212 1.135083 AGCGGACGACAGAACCTTATG 60.135 52.381 0.00 0.00 0.00 1.90
212 213 1.278238 CGGACGACAGAACCTTATGC 58.722 55.000 0.00 0.00 0.00 3.14
213 214 1.135083 CGGACGACAGAACCTTATGCT 60.135 52.381 0.00 0.00 0.00 3.79
214 215 2.541556 GGACGACAGAACCTTATGCTC 58.458 52.381 0.00 0.00 0.00 4.26
215 216 2.166664 GGACGACAGAACCTTATGCTCT 59.833 50.000 0.00 0.00 0.00 4.09
216 217 3.368531 GGACGACAGAACCTTATGCTCTT 60.369 47.826 0.00 0.00 0.00 2.85
217 218 4.246458 GACGACAGAACCTTATGCTCTTT 58.754 43.478 0.00 0.00 0.00 2.52
218 219 4.642429 ACGACAGAACCTTATGCTCTTTT 58.358 39.130 0.00 0.00 0.00 2.27
219 220 5.063880 ACGACAGAACCTTATGCTCTTTTT 58.936 37.500 0.00 0.00 0.00 1.94
220 221 6.228258 ACGACAGAACCTTATGCTCTTTTTA 58.772 36.000 0.00 0.00 0.00 1.52
221 222 6.708949 ACGACAGAACCTTATGCTCTTTTTAA 59.291 34.615 0.00 0.00 0.00 1.52
222 223 7.095187 ACGACAGAACCTTATGCTCTTTTTAAG 60.095 37.037 0.00 0.00 0.00 1.85
223 224 7.095187 CGACAGAACCTTATGCTCTTTTTAAGT 60.095 37.037 0.00 0.00 0.00 2.24
224 225 9.216117 GACAGAACCTTATGCTCTTTTTAAGTA 57.784 33.333 0.00 0.00 0.00 2.24
225 226 9.220767 ACAGAACCTTATGCTCTTTTTAAGTAG 57.779 33.333 0.00 0.00 0.00 2.57
226 227 8.669243 CAGAACCTTATGCTCTTTTTAAGTAGG 58.331 37.037 0.00 0.00 0.00 3.18
227 228 8.603304 AGAACCTTATGCTCTTTTTAAGTAGGA 58.397 33.333 0.00 0.00 0.00 2.94
228 229 8.794335 AACCTTATGCTCTTTTTAAGTAGGAG 57.206 34.615 0.00 0.00 0.00 3.69
229 230 8.147244 ACCTTATGCTCTTTTTAAGTAGGAGA 57.853 34.615 0.00 0.00 0.00 3.71
230 231 8.261522 ACCTTATGCTCTTTTTAAGTAGGAGAG 58.738 37.037 0.00 0.00 37.49 3.20
231 232 8.478877 CCTTATGCTCTTTTTAAGTAGGAGAGA 58.521 37.037 3.07 0.00 36.77 3.10
232 233 9.877178 CTTATGCTCTTTTTAAGTAGGAGAGAA 57.123 33.333 3.07 0.00 36.77 2.87
236 237 9.823647 TGCTCTTTTTAAGTAGGAGAGAATATG 57.176 33.333 3.07 0.00 36.77 1.78
237 238 9.267084 GCTCTTTTTAAGTAGGAGAGAATATGG 57.733 37.037 3.07 0.00 36.77 2.74
238 239 9.771534 CTCTTTTTAAGTAGGAGAGAATATGGG 57.228 37.037 0.00 0.00 36.77 4.00
239 240 8.211629 TCTTTTTAAGTAGGAGAGAATATGGGC 58.788 37.037 0.00 0.00 0.00 5.36
240 241 7.691993 TTTTAAGTAGGAGAGAATATGGGCT 57.308 36.000 0.00 0.00 0.00 5.19
241 242 6.672266 TTAAGTAGGAGAGAATATGGGCTG 57.328 41.667 0.00 0.00 0.00 4.85
242 243 4.477536 AGTAGGAGAGAATATGGGCTGA 57.522 45.455 0.00 0.00 0.00 4.26
243 244 4.415596 AGTAGGAGAGAATATGGGCTGAG 58.584 47.826 0.00 0.00 0.00 3.35
244 245 3.627041 AGGAGAGAATATGGGCTGAGA 57.373 47.619 0.00 0.00 0.00 3.27
245 246 3.933886 AGGAGAGAATATGGGCTGAGAA 58.066 45.455 0.00 0.00 0.00 2.87
246 247 4.302067 AGGAGAGAATATGGGCTGAGAAA 58.698 43.478 0.00 0.00 0.00 2.52
247 248 4.723789 AGGAGAGAATATGGGCTGAGAAAA 59.276 41.667 0.00 0.00 0.00 2.29
248 249 5.192522 AGGAGAGAATATGGGCTGAGAAAAA 59.807 40.000 0.00 0.00 0.00 1.94
249 250 5.298026 GGAGAGAATATGGGCTGAGAAAAAC 59.702 44.000 0.00 0.00 0.00 2.43
250 251 6.072199 AGAGAATATGGGCTGAGAAAAACT 57.928 37.500 0.00 0.00 0.00 2.66
251 252 6.488715 AGAGAATATGGGCTGAGAAAAACTT 58.511 36.000 0.00 0.00 0.00 2.66
252 253 6.376581 AGAGAATATGGGCTGAGAAAAACTTG 59.623 38.462 0.00 0.00 0.00 3.16
253 254 6.248433 AGAATATGGGCTGAGAAAAACTTGA 58.752 36.000 0.00 0.00 0.00 3.02
254 255 6.721208 AGAATATGGGCTGAGAAAAACTTGAA 59.279 34.615 0.00 0.00 0.00 2.69
255 256 7.398332 AGAATATGGGCTGAGAAAAACTTGAAT 59.602 33.333 0.00 0.00 0.00 2.57
256 257 5.813513 ATGGGCTGAGAAAAACTTGAATT 57.186 34.783 0.00 0.00 0.00 2.17
257 258 4.947645 TGGGCTGAGAAAAACTTGAATTG 58.052 39.130 0.00 0.00 0.00 2.32
258 259 4.648762 TGGGCTGAGAAAAACTTGAATTGA 59.351 37.500 0.00 0.00 0.00 2.57
259 260 5.221303 TGGGCTGAGAAAAACTTGAATTGAG 60.221 40.000 0.00 0.00 0.00 3.02
260 261 4.683320 GGCTGAGAAAAACTTGAATTGAGC 59.317 41.667 0.00 0.00 0.00 4.26
261 262 5.508657 GGCTGAGAAAAACTTGAATTGAGCT 60.509 40.000 0.00 0.00 0.00 4.09
262 263 6.294176 GGCTGAGAAAAACTTGAATTGAGCTA 60.294 38.462 0.00 0.00 0.00 3.32
263 264 6.580416 GCTGAGAAAAACTTGAATTGAGCTAC 59.420 38.462 0.00 0.00 0.00 3.58
264 265 7.566760 TGAGAAAAACTTGAATTGAGCTACA 57.433 32.000 0.00 0.00 0.00 2.74
265 266 8.169977 TGAGAAAAACTTGAATTGAGCTACAT 57.830 30.769 0.00 0.00 0.00 2.29
266 267 8.632679 TGAGAAAAACTTGAATTGAGCTACATT 58.367 29.630 0.00 0.00 0.00 2.71
267 268 9.468532 GAGAAAAACTTGAATTGAGCTACATTT 57.531 29.630 0.00 0.00 0.00 2.32
268 269 9.252962 AGAAAAACTTGAATTGAGCTACATTTG 57.747 29.630 0.00 0.00 0.00 2.32
269 270 7.412137 AAAACTTGAATTGAGCTACATTTGC 57.588 32.000 0.00 0.00 0.00 3.68
270 271 5.710513 ACTTGAATTGAGCTACATTTGCA 57.289 34.783 0.00 0.00 0.00 4.08
271 272 5.706916 ACTTGAATTGAGCTACATTTGCAG 58.293 37.500 0.00 0.00 0.00 4.41
272 273 5.474532 ACTTGAATTGAGCTACATTTGCAGA 59.525 36.000 0.00 0.00 0.00 4.26
273 274 5.963176 TGAATTGAGCTACATTTGCAGAA 57.037 34.783 0.00 0.00 0.00 3.02
274 275 5.702865 TGAATTGAGCTACATTTGCAGAAC 58.297 37.500 0.00 0.00 0.00 3.01
275 276 5.241285 TGAATTGAGCTACATTTGCAGAACA 59.759 36.000 0.00 0.00 0.00 3.18
276 277 5.710513 ATTGAGCTACATTTGCAGAACAA 57.289 34.783 0.00 0.00 36.13 2.83
288 289 5.947228 TTGCAGAACAAACTCAAGGATAG 57.053 39.130 0.00 0.00 34.56 2.08
289 290 4.326826 TGCAGAACAAACTCAAGGATAGG 58.673 43.478 0.00 0.00 0.00 2.57
290 291 4.202461 TGCAGAACAAACTCAAGGATAGGT 60.202 41.667 0.00 0.00 0.00 3.08
291 292 4.154918 GCAGAACAAACTCAAGGATAGGTG 59.845 45.833 0.00 0.00 0.00 4.00
292 293 4.154918 CAGAACAAACTCAAGGATAGGTGC 59.845 45.833 0.00 0.00 0.00 5.01
293 294 3.788227 ACAAACTCAAGGATAGGTGCA 57.212 42.857 0.00 0.00 0.00 4.57
294 295 4.098914 ACAAACTCAAGGATAGGTGCAA 57.901 40.909 0.00 0.00 0.00 4.08
295 296 4.469657 ACAAACTCAAGGATAGGTGCAAA 58.530 39.130 0.00 0.00 0.00 3.68
296 297 4.520492 ACAAACTCAAGGATAGGTGCAAAG 59.480 41.667 0.00 0.00 0.00 2.77
297 298 4.373156 AACTCAAGGATAGGTGCAAAGT 57.627 40.909 0.00 0.00 0.00 2.66
298 299 4.373156 ACTCAAGGATAGGTGCAAAGTT 57.627 40.909 0.00 0.00 0.00 2.66
299 300 5.499004 ACTCAAGGATAGGTGCAAAGTTA 57.501 39.130 0.00 0.00 0.00 2.24
300 301 5.876357 ACTCAAGGATAGGTGCAAAGTTAA 58.124 37.500 0.00 0.00 0.00 2.01
301 302 5.940470 ACTCAAGGATAGGTGCAAAGTTAAG 59.060 40.000 0.00 0.00 0.00 1.85
302 303 6.121776 TCAAGGATAGGTGCAAAGTTAAGA 57.878 37.500 0.00 0.00 0.00 2.10
303 304 6.539173 TCAAGGATAGGTGCAAAGTTAAGAA 58.461 36.000 0.00 0.00 0.00 2.52
304 305 7.001674 TCAAGGATAGGTGCAAAGTTAAGAAA 58.998 34.615 0.00 0.00 0.00 2.52
305 306 7.669722 TCAAGGATAGGTGCAAAGTTAAGAAAT 59.330 33.333 0.00 0.00 0.00 2.17
306 307 8.956426 CAAGGATAGGTGCAAAGTTAAGAAATA 58.044 33.333 0.00 0.00 0.00 1.40
307 308 9.528489 AAGGATAGGTGCAAAGTTAAGAAATAA 57.472 29.630 0.00 0.00 0.00 1.40
308 309 9.700831 AGGATAGGTGCAAAGTTAAGAAATAAT 57.299 29.630 0.00 0.00 0.00 1.28
326 327 9.788960 AGAAATAATTAAGTTCGAAAGCATTCC 57.211 29.630 0.00 0.00 31.52 3.01
327 328 9.567848 GAAATAATTAAGTTCGAAAGCATTCCA 57.432 29.630 0.00 0.00 31.52 3.53
328 329 9.921637 AAATAATTAAGTTCGAAAGCATTCCAA 57.078 25.926 0.00 0.00 31.52 3.53
329 330 9.573133 AATAATTAAGTTCGAAAGCATTCCAAG 57.427 29.630 0.00 0.00 31.52 3.61
330 331 6.817765 ATTAAGTTCGAAAGCATTCCAAGA 57.182 33.333 0.00 0.00 31.52 3.02
331 332 4.756084 AAGTTCGAAAGCATTCCAAGAG 57.244 40.909 0.00 0.00 31.52 2.85
332 333 3.077359 AGTTCGAAAGCATTCCAAGAGG 58.923 45.455 0.00 0.00 31.52 3.69
333 334 1.453155 TCGAAAGCATTCCAAGAGGC 58.547 50.000 0.00 0.00 31.52 4.70
334 335 1.003580 TCGAAAGCATTCCAAGAGGCT 59.996 47.619 0.00 0.00 38.45 4.58
340 341 4.996788 AGCATTCCAAGAGGCTTTAATG 57.003 40.909 0.00 0.00 31.34 1.90
341 342 3.703052 AGCATTCCAAGAGGCTTTAATGG 59.297 43.478 0.00 0.00 31.34 3.16
342 343 3.181472 GCATTCCAAGAGGCTTTAATGGG 60.181 47.826 8.36 0.00 30.17 4.00
343 344 4.280819 CATTCCAAGAGGCTTTAATGGGA 58.719 43.478 8.36 1.77 33.74 4.37
344 345 4.608170 TTCCAAGAGGCTTTAATGGGAT 57.392 40.909 8.36 0.00 33.74 3.85
345 346 3.902218 TCCAAGAGGCTTTAATGGGATG 58.098 45.455 8.36 0.00 33.74 3.51
346 347 3.269381 TCCAAGAGGCTTTAATGGGATGT 59.731 43.478 8.36 0.00 33.74 3.06
347 348 3.382546 CCAAGAGGCTTTAATGGGATGTG 59.617 47.826 0.00 0.00 0.00 3.21
348 349 3.303351 AGAGGCTTTAATGGGATGTGG 57.697 47.619 0.00 0.00 0.00 4.17
349 350 2.852449 AGAGGCTTTAATGGGATGTGGA 59.148 45.455 0.00 0.00 0.00 4.02
350 351 3.117738 AGAGGCTTTAATGGGATGTGGAG 60.118 47.826 0.00 0.00 0.00 3.86
351 352 2.852449 AGGCTTTAATGGGATGTGGAGA 59.148 45.455 0.00 0.00 0.00 3.71
352 353 3.464833 AGGCTTTAATGGGATGTGGAGAT 59.535 43.478 0.00 0.00 0.00 2.75
353 354 4.078980 AGGCTTTAATGGGATGTGGAGATT 60.079 41.667 0.00 0.00 0.00 2.40
354 355 4.651045 GGCTTTAATGGGATGTGGAGATTT 59.349 41.667 0.00 0.00 0.00 2.17
355 356 5.129320 GGCTTTAATGGGATGTGGAGATTTT 59.871 40.000 0.00 0.00 0.00 1.82
356 357 6.276091 GCTTTAATGGGATGTGGAGATTTTC 58.724 40.000 0.00 0.00 0.00 2.29
357 358 6.683861 GCTTTAATGGGATGTGGAGATTTTCC 60.684 42.308 0.00 0.00 46.98 3.13
369 370 4.576879 GGAGATTTTCCAAACGAGTAGGT 58.423 43.478 0.00 0.00 46.01 3.08
370 371 5.727434 GGAGATTTTCCAAACGAGTAGGTA 58.273 41.667 0.00 0.00 46.01 3.08
371 372 6.168389 GGAGATTTTCCAAACGAGTAGGTAA 58.832 40.000 0.00 0.00 46.01 2.85
372 373 6.822170 GGAGATTTTCCAAACGAGTAGGTAAT 59.178 38.462 0.00 0.00 46.01 1.89
373 374 7.201617 GGAGATTTTCCAAACGAGTAGGTAATG 60.202 40.741 0.00 0.00 46.01 1.90
374 375 6.598064 AGATTTTCCAAACGAGTAGGTAATGG 59.402 38.462 0.00 0.00 0.00 3.16
375 376 5.486735 TTTCCAAACGAGTAGGTAATGGA 57.513 39.130 0.00 0.00 35.47 3.41
376 377 4.730949 TCCAAACGAGTAGGTAATGGAG 57.269 45.455 0.00 0.00 33.56 3.86
377 378 3.118884 TCCAAACGAGTAGGTAATGGAGC 60.119 47.826 0.00 0.00 33.56 4.70
378 379 3.118738 CCAAACGAGTAGGTAATGGAGCT 60.119 47.826 0.00 0.00 39.82 4.09
379 380 3.802948 AACGAGTAGGTAATGGAGCTG 57.197 47.619 0.00 0.00 37.09 4.24
380 381 2.032620 ACGAGTAGGTAATGGAGCTGG 58.967 52.381 0.00 0.00 37.09 4.85
381 382 2.032620 CGAGTAGGTAATGGAGCTGGT 58.967 52.381 0.00 0.00 37.09 4.00
382 383 2.223829 CGAGTAGGTAATGGAGCTGGTG 60.224 54.545 0.00 0.00 37.09 4.17
383 384 1.486726 AGTAGGTAATGGAGCTGGTGC 59.513 52.381 0.00 0.00 37.09 5.01
384 385 1.209504 GTAGGTAATGGAGCTGGTGCA 59.790 52.381 2.96 2.96 42.74 4.57
385 386 0.698238 AGGTAATGGAGCTGGTGCAA 59.302 50.000 4.90 0.00 42.74 4.08
386 387 1.075374 AGGTAATGGAGCTGGTGCAAA 59.925 47.619 4.90 0.00 42.74 3.68
387 388 1.474077 GGTAATGGAGCTGGTGCAAAG 59.526 52.381 4.90 0.00 42.74 2.77
388 389 1.474077 GTAATGGAGCTGGTGCAAAGG 59.526 52.381 4.90 0.00 42.74 3.11
389 390 0.112995 AATGGAGCTGGTGCAAAGGA 59.887 50.000 4.90 0.00 42.74 3.36
390 391 0.323178 ATGGAGCTGGTGCAAAGGAG 60.323 55.000 4.90 0.00 42.74 3.69
391 392 1.376466 GGAGCTGGTGCAAAGGAGA 59.624 57.895 0.00 0.00 42.74 3.71
392 393 0.034670 GGAGCTGGTGCAAAGGAGAT 60.035 55.000 0.00 0.00 42.74 2.75
393 394 1.210478 GGAGCTGGTGCAAAGGAGATA 59.790 52.381 0.00 0.00 42.74 1.98
394 395 2.356125 GGAGCTGGTGCAAAGGAGATAA 60.356 50.000 0.00 0.00 42.74 1.75
395 396 3.549794 GAGCTGGTGCAAAGGAGATAAT 58.450 45.455 0.00 0.00 42.74 1.28
396 397 3.950395 GAGCTGGTGCAAAGGAGATAATT 59.050 43.478 0.00 0.00 42.74 1.40
397 398 5.116084 AGCTGGTGCAAAGGAGATAATTA 57.884 39.130 0.00 0.00 42.74 1.40
398 399 5.699143 AGCTGGTGCAAAGGAGATAATTAT 58.301 37.500 0.00 0.00 42.74 1.28
399 400 5.533903 AGCTGGTGCAAAGGAGATAATTATG 59.466 40.000 1.78 0.00 42.74 1.90
400 401 5.300286 GCTGGTGCAAAGGAGATAATTATGT 59.700 40.000 1.78 0.00 39.41 2.29
401 402 6.183360 GCTGGTGCAAAGGAGATAATTATGTT 60.183 38.462 1.78 0.00 39.41 2.71
402 403 7.631377 GCTGGTGCAAAGGAGATAATTATGTTT 60.631 37.037 1.78 0.00 39.41 2.83
403 404 8.133024 TGGTGCAAAGGAGATAATTATGTTTT 57.867 30.769 1.78 0.00 0.00 2.43
404 405 8.592809 TGGTGCAAAGGAGATAATTATGTTTTT 58.407 29.630 1.78 2.08 0.00 1.94
452 453 8.928733 TGTTGTATATTCTTACGTGAGTTTTCC 58.071 33.333 7.27 0.00 46.40 3.13
459 460 5.904941 TCTTACGTGAGTTTTCCAACTACA 58.095 37.500 7.27 0.00 46.40 2.74
460 461 5.750067 TCTTACGTGAGTTTTCCAACTACAC 59.250 40.000 7.27 0.00 46.40 2.90
465 466 5.963586 CGTGAGTTTTCCAACTACACTTTTC 59.036 40.000 0.00 0.00 43.79 2.29
466 467 6.402766 CGTGAGTTTTCCAACTACACTTTTCA 60.403 38.462 0.00 0.00 43.79 2.69
467 468 7.309920 GTGAGTTTTCCAACTACACTTTTCAA 58.690 34.615 0.00 0.00 43.79 2.69
473 474 5.596845 TCCAACTACACTTTTCAAAATGGC 58.403 37.500 0.00 0.00 0.00 4.40
481 482 6.866480 ACACTTTTCAAAATGGCGATGATAT 58.134 32.000 0.00 0.00 0.00 1.63
547 549 9.082313 AGAAGTTTCAAGTTATGGATGAAATGT 57.918 29.630 3.80 0.00 42.88 2.71
996 1134 0.179468 TAAGGGCCGTGGTCTAATGC 59.821 55.000 0.90 0.00 0.00 3.56
1115 1276 1.422531 CTCATCTTCCCCCTCCTCTG 58.577 60.000 0.00 0.00 0.00 3.35
1131 1292 0.251165 TCTGTTTGGTGCTTAGCCCC 60.251 55.000 0.29 0.00 0.00 5.80
1399 1682 3.370527 CGTATGGTTCAGGGTTCTTCCAT 60.371 47.826 0.00 0.00 38.83 3.41
1454 1737 2.287487 GGAGTCGTAACGGCCTTCTATC 60.287 54.545 0.00 0.00 28.67 2.08
1492 1775 7.929159 CATGTGGTTTCTACATGTTGCATATA 58.071 34.615 2.30 0.00 46.37 0.86
1525 1808 8.178313 GCTAGTCATTTCCTTTAGTTTGATGAC 58.822 37.037 0.00 0.00 41.14 3.06
1548 1831 9.121658 TGACGAATACTAGAAGTCAGATATTGT 57.878 33.333 0.00 0.00 36.98 2.71
1549 1832 9.601971 GACGAATACTAGAAGTCAGATATTGTC 57.398 37.037 0.00 0.00 32.57 3.18
1550 1833 8.283992 ACGAATACTAGAAGTCAGATATTGTCG 58.716 37.037 0.00 0.00 0.00 4.35
1551 1834 7.746916 CGAATACTAGAAGTCAGATATTGTCGG 59.253 40.741 0.00 0.00 0.00 4.79
1552 1835 8.466617 AATACTAGAAGTCAGATATTGTCGGT 57.533 34.615 0.00 0.00 0.00 4.69
1553 1836 6.380095 ACTAGAAGTCAGATATTGTCGGTC 57.620 41.667 0.00 0.00 0.00 4.79
1554 1837 4.294416 AGAAGTCAGATATTGTCGGTCG 57.706 45.455 0.00 0.00 0.00 4.79
1555 1838 3.695060 AGAAGTCAGATATTGTCGGTCGT 59.305 43.478 0.00 0.00 0.00 4.34
1556 1839 3.422417 AGTCAGATATTGTCGGTCGTG 57.578 47.619 0.00 0.00 0.00 4.35
1557 1840 3.014623 AGTCAGATATTGTCGGTCGTGA 58.985 45.455 0.00 0.00 0.00 4.35
1558 1841 3.632604 AGTCAGATATTGTCGGTCGTGAT 59.367 43.478 0.00 0.00 0.00 3.06
1559 1842 4.098044 AGTCAGATATTGTCGGTCGTGATT 59.902 41.667 0.00 0.00 0.00 2.57
1560 1843 4.207224 GTCAGATATTGTCGGTCGTGATTG 59.793 45.833 0.00 0.00 0.00 2.67
1561 1844 4.112634 CAGATATTGTCGGTCGTGATTGT 58.887 43.478 0.00 0.00 0.00 2.71
1562 1845 5.066764 TCAGATATTGTCGGTCGTGATTGTA 59.933 40.000 0.00 0.00 0.00 2.41
1563 1846 5.746721 CAGATATTGTCGGTCGTGATTGTAA 59.253 40.000 0.00 0.00 0.00 2.41
1564 1847 6.420903 CAGATATTGTCGGTCGTGATTGTAAT 59.579 38.462 0.00 0.00 0.00 1.89
1565 1848 6.984474 AGATATTGTCGGTCGTGATTGTAATT 59.016 34.615 0.00 0.00 0.00 1.40
1566 1849 4.914312 TTGTCGGTCGTGATTGTAATTC 57.086 40.909 0.00 0.00 0.00 2.17
1567 1850 4.182693 TGTCGGTCGTGATTGTAATTCT 57.817 40.909 0.00 0.00 0.00 2.40
1568 1851 4.562082 TGTCGGTCGTGATTGTAATTCTT 58.438 39.130 0.00 0.00 0.00 2.52
1569 1852 4.387559 TGTCGGTCGTGATTGTAATTCTTG 59.612 41.667 0.00 0.00 0.00 3.02
1570 1853 3.930229 TCGGTCGTGATTGTAATTCTTGG 59.070 43.478 0.00 0.00 0.00 3.61
1571 1854 3.063452 CGGTCGTGATTGTAATTCTTGGG 59.937 47.826 0.00 0.00 0.00 4.12
1572 1855 3.181500 GGTCGTGATTGTAATTCTTGGGC 60.181 47.826 0.00 0.00 0.00 5.36
1573 1856 2.675844 TCGTGATTGTAATTCTTGGGCG 59.324 45.455 0.00 0.00 0.00 6.13
1574 1857 2.675844 CGTGATTGTAATTCTTGGGCGA 59.324 45.455 0.00 0.00 0.00 5.54
1575 1858 3.312421 CGTGATTGTAATTCTTGGGCGAT 59.688 43.478 0.00 0.00 0.00 4.58
1576 1859 4.201910 CGTGATTGTAATTCTTGGGCGATT 60.202 41.667 0.00 0.00 0.00 3.34
1577 1860 5.036737 GTGATTGTAATTCTTGGGCGATTG 58.963 41.667 0.00 0.00 0.00 2.67
1578 1861 4.946772 TGATTGTAATTCTTGGGCGATTGA 59.053 37.500 0.00 0.00 0.00 2.57
1579 1862 4.963276 TTGTAATTCTTGGGCGATTGAG 57.037 40.909 0.00 0.00 0.00 3.02
1580 1863 3.950397 TGTAATTCTTGGGCGATTGAGT 58.050 40.909 0.00 0.00 0.00 3.41
1581 1864 5.092554 TGTAATTCTTGGGCGATTGAGTA 57.907 39.130 0.00 0.00 0.00 2.59
1582 1865 5.492895 TGTAATTCTTGGGCGATTGAGTAA 58.507 37.500 0.00 0.00 0.00 2.24
1583 1866 6.119536 TGTAATTCTTGGGCGATTGAGTAAT 58.880 36.000 0.00 0.00 0.00 1.89
1584 1867 7.276658 TGTAATTCTTGGGCGATTGAGTAATA 58.723 34.615 0.00 0.00 0.00 0.98
1585 1868 6.619801 AATTCTTGGGCGATTGAGTAATAC 57.380 37.500 0.00 0.00 0.00 1.89
1586 1869 4.746535 TCTTGGGCGATTGAGTAATACA 57.253 40.909 0.00 0.00 0.00 2.29
1587 1870 5.092554 TCTTGGGCGATTGAGTAATACAA 57.907 39.130 0.00 0.00 0.00 2.41
1588 1871 5.116180 TCTTGGGCGATTGAGTAATACAAG 58.884 41.667 0.00 0.00 0.00 3.16
1589 1872 4.481368 TGGGCGATTGAGTAATACAAGT 57.519 40.909 0.00 0.00 0.00 3.16
1590 1873 5.601583 TGGGCGATTGAGTAATACAAGTA 57.398 39.130 0.00 0.00 0.00 2.24
1591 1874 6.169557 TGGGCGATTGAGTAATACAAGTAT 57.830 37.500 0.00 0.00 0.00 2.12
1592 1875 6.588204 TGGGCGATTGAGTAATACAAGTATT 58.412 36.000 10.06 10.06 39.02 1.89
1593 1876 7.728148 TGGGCGATTGAGTAATACAAGTATTA 58.272 34.615 8.25 8.25 37.07 0.98
1594 1877 8.372459 TGGGCGATTGAGTAATACAAGTATTAT 58.628 33.333 13.90 5.66 39.40 1.28
1595 1878 8.870879 GGGCGATTGAGTAATACAAGTATTATC 58.129 37.037 13.90 12.41 39.40 1.75
1596 1879 8.870879 GGCGATTGAGTAATACAAGTATTATCC 58.129 37.037 13.90 10.11 39.40 2.59
1597 1880 8.870879 GCGATTGAGTAATACAAGTATTATCCC 58.129 37.037 13.90 8.29 39.40 3.85
1598 1881 9.073368 CGATTGAGTAATACAAGTATTATCCCG 57.927 37.037 13.90 9.32 39.40 5.14
1599 1882 8.773404 ATTGAGTAATACAAGTATTATCCCGC 57.227 34.615 13.90 6.11 39.40 6.13
1600 1883 7.292713 TGAGTAATACAAGTATTATCCCGCA 57.707 36.000 13.90 8.07 39.40 5.69
1601 1884 7.728148 TGAGTAATACAAGTATTATCCCGCAA 58.272 34.615 13.90 0.00 39.40 4.85
1602 1885 8.205512 TGAGTAATACAAGTATTATCCCGCAAA 58.794 33.333 13.90 0.00 39.40 3.68
1603 1886 8.967664 AGTAATACAAGTATTATCCCGCAAAA 57.032 30.769 13.90 0.00 39.40 2.44
1604 1887 9.398538 AGTAATACAAGTATTATCCCGCAAAAA 57.601 29.630 13.90 0.00 39.40 1.94
1639 1933 4.939439 TGTATCTTGTACGTCTAGCTCACA 59.061 41.667 0.00 0.00 0.00 3.58
1641 1935 5.584253 ATCTTGTACGTCTAGCTCACAAT 57.416 39.130 0.00 0.00 0.00 2.71
1664 1958 2.425592 CCGAGCAAGGTGACCACA 59.574 61.111 3.63 0.00 0.00 4.17
1747 2041 2.943036 TCTTCCTAAACGGCAAAGGT 57.057 45.000 0.00 0.00 0.00 3.50
1753 2047 2.218603 CTAAACGGCAAAGGTGACAGT 58.781 47.619 0.00 0.00 30.49 3.55
1771 2065 0.179150 GTGAGCAGAGGTACGAGCTG 60.179 60.000 0.00 4.70 35.60 4.24
1783 2077 2.049063 GAGCTGTGGTTCGACGCT 60.049 61.111 0.00 0.00 0.00 5.07
1851 2145 4.025396 GCTCGTGTAAGTCCATCAATCATG 60.025 45.833 0.00 0.00 0.00 3.07
2042 2362 4.891727 CTCCGATTGGGCGACGGG 62.892 72.222 0.00 0.00 45.61 5.28
2048 2368 3.936772 ATTGGGCGACGGGCAATGT 62.937 57.895 0.00 0.00 46.16 2.71
2110 2430 1.406180 TGTTTCAGGACTTCGACGTCA 59.594 47.619 21.85 0.64 35.63 4.35
2344 2670 7.389330 CAGATTAGATACACTAGTCATCGACCT 59.611 40.741 0.00 0.00 39.34 3.85
2451 2777 5.640147 TCAAGGCCCTCTTCAGAATAAAAA 58.360 37.500 0.00 0.00 32.41 1.94
2539 2865 8.507249 CCTACAAATTGTTTTCTCTAAGACTGG 58.493 37.037 3.17 0.00 0.00 4.00
2646 2996 3.715628 AGCATTTCTTTGAAAGCACGT 57.284 38.095 0.00 0.00 0.00 4.49
2986 3340 9.508642 TGTCATAATGGTTGTGTGAATAACTTA 57.491 29.630 0.00 0.00 0.00 2.24
3064 3418 9.244292 GAAGAAATCAATTAGTTTAAGGACCCT 57.756 33.333 0.00 0.00 0.00 4.34
3080 3434 3.877508 GGACCCTACATTACATGTTGCTC 59.122 47.826 2.30 0.00 41.63 4.26
3084 3438 4.276678 CCCTACATTACATGTTGCTCCATG 59.723 45.833 2.30 12.70 46.14 3.66
3094 3448 5.824429 CATGTTGCTCCATGTATGTTTAGG 58.176 41.667 7.70 0.00 37.91 2.69
3095 3449 3.694072 TGTTGCTCCATGTATGTTTAGGC 59.306 43.478 0.00 0.00 0.00 3.93
3143 3497 3.021451 GGCACAACCTAAGCACACT 57.979 52.632 0.00 0.00 34.51 3.55
3154 3508 6.210287 ACCTAAGCACACTAGTTCAGATAC 57.790 41.667 0.00 0.00 0.00 2.24
3174 3528 3.397527 ACCAACCATCCTGACTATGGAT 58.602 45.455 9.02 0.00 45.77 3.41
3210 3564 8.616076 CATTAATTCTACCATGGACTTCTGTTC 58.384 37.037 21.47 0.00 0.00 3.18
3226 3580 3.982701 TCTGTTCGCTCAATGCAAAATTG 59.017 39.130 0.00 0.00 43.06 2.32
3264 3618 5.894807 AGCTATGTAAATGATGCACAAACC 58.105 37.500 0.00 0.00 0.00 3.27
3350 3704 6.524734 TGGTGATCAATAGGTAGCTTGTATG 58.475 40.000 0.00 0.00 0.00 2.39
3376 3730 3.679980 CCAGATGGAAGTCGTTACAACTG 59.320 47.826 0.00 2.34 43.78 3.16
3390 3744 1.273606 ACAACTGAGTCTGTGGATCCG 59.726 52.381 11.25 0.00 0.00 4.18
3399 3753 0.941463 CTGTGGATCCGCGCATCTAC 60.941 60.000 18.58 18.58 35.39 2.59
3435 3789 2.515979 TTGAGAGCGGGGCAGACAA 61.516 57.895 0.00 0.00 0.00 3.18
3443 3797 1.376683 GGGGCAGACAACGCATACA 60.377 57.895 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 5.180680 GCCGATTAGTTCTTACCAAACAAGT 59.819 40.000 0.00 0.00 0.00 3.16
6 7 5.411669 AGCCGATTAGTTCTTACCAAACAAG 59.588 40.000 0.00 0.00 0.00 3.16
7 8 5.310451 AGCCGATTAGTTCTTACCAAACAA 58.690 37.500 0.00 0.00 0.00 2.83
8 9 4.901868 AGCCGATTAGTTCTTACCAAACA 58.098 39.130 0.00 0.00 0.00 2.83
9 10 5.874895 AAGCCGATTAGTTCTTACCAAAC 57.125 39.130 0.00 0.00 0.00 2.93
10 11 6.465948 TGTAAGCCGATTAGTTCTTACCAAA 58.534 36.000 8.07 0.00 39.82 3.28
11 12 6.040209 TGTAAGCCGATTAGTTCTTACCAA 57.960 37.500 8.07 0.00 39.82 3.67
12 13 5.664294 TGTAAGCCGATTAGTTCTTACCA 57.336 39.130 8.07 0.00 39.82 3.25
13 14 6.973229 TTTGTAAGCCGATTAGTTCTTACC 57.027 37.500 8.07 0.00 39.82 2.85
53 54 8.329502 GGCCCACCTCTTATTTACTTATCATAT 58.670 37.037 0.00 0.00 0.00 1.78
54 55 7.526526 CGGCCCACCTCTTATTTACTTATCATA 60.527 40.741 0.00 0.00 0.00 2.15
55 56 6.543735 GGCCCACCTCTTATTTACTTATCAT 58.456 40.000 0.00 0.00 0.00 2.45
56 57 5.454187 CGGCCCACCTCTTATTTACTTATCA 60.454 44.000 0.00 0.00 0.00 2.15
57 58 4.995487 CGGCCCACCTCTTATTTACTTATC 59.005 45.833 0.00 0.00 0.00 1.75
58 59 4.202430 CCGGCCCACCTCTTATTTACTTAT 60.202 45.833 0.00 0.00 0.00 1.73
59 60 3.135167 CCGGCCCACCTCTTATTTACTTA 59.865 47.826 0.00 0.00 0.00 2.24
60 61 2.092592 CCGGCCCACCTCTTATTTACTT 60.093 50.000 0.00 0.00 0.00 2.24
61 62 1.489230 CCGGCCCACCTCTTATTTACT 59.511 52.381 0.00 0.00 0.00 2.24
62 63 1.211212 ACCGGCCCACCTCTTATTTAC 59.789 52.381 0.00 0.00 0.00 2.01
63 64 1.587066 ACCGGCCCACCTCTTATTTA 58.413 50.000 0.00 0.00 0.00 1.40
64 65 0.702316 AACCGGCCCACCTCTTATTT 59.298 50.000 0.00 0.00 0.00 1.40
65 66 0.034477 CAACCGGCCCACCTCTTATT 60.034 55.000 0.00 0.00 0.00 1.40
66 67 0.912487 TCAACCGGCCCACCTCTTAT 60.912 55.000 0.00 0.00 0.00 1.73
67 68 1.536907 TCAACCGGCCCACCTCTTA 60.537 57.895 0.00 0.00 0.00 2.10
68 69 2.852075 TCAACCGGCCCACCTCTT 60.852 61.111 0.00 0.00 0.00 2.85
69 70 3.322466 CTCAACCGGCCCACCTCT 61.322 66.667 0.00 0.00 0.00 3.69
70 71 3.192103 AACTCAACCGGCCCACCTC 62.192 63.158 0.00 0.00 0.00 3.85
71 72 3.175710 AACTCAACCGGCCCACCT 61.176 61.111 0.00 0.00 0.00 4.00
72 73 2.983592 CAACTCAACCGGCCCACC 60.984 66.667 0.00 0.00 0.00 4.61
73 74 2.983592 CCAACTCAACCGGCCCAC 60.984 66.667 0.00 0.00 0.00 4.61
74 75 2.575455 AAACCAACTCAACCGGCCCA 62.575 55.000 0.00 0.00 0.00 5.36
75 76 1.802337 GAAACCAACTCAACCGGCCC 61.802 60.000 0.00 0.00 0.00 5.80
76 77 1.658114 GAAACCAACTCAACCGGCC 59.342 57.895 0.00 0.00 0.00 6.13
77 78 1.104577 TGGAAACCAACTCAACCGGC 61.105 55.000 0.00 0.00 0.00 6.13
78 79 1.336755 CTTGGAAACCAACTCAACCGG 59.663 52.381 0.00 0.00 38.75 5.28
79 80 2.294074 TCTTGGAAACCAACTCAACCG 58.706 47.619 0.00 0.00 38.75 4.44
80 81 4.729227 TTTCTTGGAAACCAACTCAACC 57.271 40.909 0.00 0.00 38.75 3.77
111 112 3.570912 TCTCCCGTCTTTGGTCTTTTT 57.429 42.857 0.00 0.00 0.00 1.94
112 113 3.570912 TTCTCCCGTCTTTGGTCTTTT 57.429 42.857 0.00 0.00 0.00 2.27
113 114 3.211865 GTTTCTCCCGTCTTTGGTCTTT 58.788 45.455 0.00 0.00 0.00 2.52
114 115 2.171870 TGTTTCTCCCGTCTTTGGTCTT 59.828 45.455 0.00 0.00 0.00 3.01
115 116 1.766496 TGTTTCTCCCGTCTTTGGTCT 59.234 47.619 0.00 0.00 0.00 3.85
116 117 2.249844 TGTTTCTCCCGTCTTTGGTC 57.750 50.000 0.00 0.00 0.00 4.02
117 118 2.721425 TTGTTTCTCCCGTCTTTGGT 57.279 45.000 0.00 0.00 0.00 3.67
118 119 4.037446 TGATTTTGTTTCTCCCGTCTTTGG 59.963 41.667 0.00 0.00 0.00 3.28
119 120 5.181690 TGATTTTGTTTCTCCCGTCTTTG 57.818 39.130 0.00 0.00 0.00 2.77
120 121 5.592688 TCTTGATTTTGTTTCTCCCGTCTTT 59.407 36.000 0.00 0.00 0.00 2.52
121 122 5.130350 TCTTGATTTTGTTTCTCCCGTCTT 58.870 37.500 0.00 0.00 0.00 3.01
122 123 4.714632 TCTTGATTTTGTTTCTCCCGTCT 58.285 39.130 0.00 0.00 0.00 4.18
123 124 5.432885 TTCTTGATTTTGTTTCTCCCGTC 57.567 39.130 0.00 0.00 0.00 4.79
124 125 4.278419 CCTTCTTGATTTTGTTTCTCCCGT 59.722 41.667 0.00 0.00 0.00 5.28
125 126 4.321230 CCCTTCTTGATTTTGTTTCTCCCG 60.321 45.833 0.00 0.00 0.00 5.14
126 127 4.021104 CCCCTTCTTGATTTTGTTTCTCCC 60.021 45.833 0.00 0.00 0.00 4.30
127 128 4.832823 TCCCCTTCTTGATTTTGTTTCTCC 59.167 41.667 0.00 0.00 0.00 3.71
128 129 6.596309 ATCCCCTTCTTGATTTTGTTTCTC 57.404 37.500 0.00 0.00 0.00 2.87
129 130 7.470192 TCTATCCCCTTCTTGATTTTGTTTCT 58.530 34.615 0.00 0.00 0.00 2.52
130 131 7.148000 CCTCTATCCCCTTCTTGATTTTGTTTC 60.148 40.741 0.00 0.00 0.00 2.78
131 132 6.665248 CCTCTATCCCCTTCTTGATTTTGTTT 59.335 38.462 0.00 0.00 0.00 2.83
132 133 6.011628 TCCTCTATCCCCTTCTTGATTTTGTT 60.012 38.462 0.00 0.00 0.00 2.83
133 134 5.492524 TCCTCTATCCCCTTCTTGATTTTGT 59.507 40.000 0.00 0.00 0.00 2.83
134 135 6.006275 TCCTCTATCCCCTTCTTGATTTTG 57.994 41.667 0.00 0.00 0.00 2.44
135 136 5.973124 TCTCCTCTATCCCCTTCTTGATTTT 59.027 40.000 0.00 0.00 0.00 1.82
136 137 5.542743 TCTCCTCTATCCCCTTCTTGATTT 58.457 41.667 0.00 0.00 0.00 2.17
137 138 5.154418 CTCTCCTCTATCCCCTTCTTGATT 58.846 45.833 0.00 0.00 0.00 2.57
138 139 4.450563 CCTCTCCTCTATCCCCTTCTTGAT 60.451 50.000 0.00 0.00 0.00 2.57
139 140 3.116939 CCTCTCCTCTATCCCCTTCTTGA 60.117 52.174 0.00 0.00 0.00 3.02
140 141 3.116939 TCCTCTCCTCTATCCCCTTCTTG 60.117 52.174 0.00 0.00 0.00 3.02
141 142 3.142028 CTCCTCTCCTCTATCCCCTTCTT 59.858 52.174 0.00 0.00 0.00 2.52
142 143 2.721906 CTCCTCTCCTCTATCCCCTTCT 59.278 54.545 0.00 0.00 0.00 2.85
143 144 2.719705 TCTCCTCTCCTCTATCCCCTTC 59.280 54.545 0.00 0.00 0.00 3.46
144 145 2.808355 TCTCCTCTCCTCTATCCCCTT 58.192 52.381 0.00 0.00 0.00 3.95
145 146 2.449345 GTTCTCCTCTCCTCTATCCCCT 59.551 54.545 0.00 0.00 0.00 4.79
146 147 2.449345 AGTTCTCCTCTCCTCTATCCCC 59.551 54.545 0.00 0.00 0.00 4.81
147 148 3.895704 AGTTCTCCTCTCCTCTATCCC 57.104 52.381 0.00 0.00 0.00 3.85
148 149 6.370453 ACTTAAGTTCTCCTCTCCTCTATCC 58.630 44.000 1.12 0.00 0.00 2.59
149 150 8.983702 TTACTTAAGTTCTCCTCTCCTCTATC 57.016 38.462 14.49 0.00 0.00 2.08
150 151 9.771140 TTTTACTTAAGTTCTCCTCTCCTCTAT 57.229 33.333 14.49 0.00 0.00 1.98
151 152 9.771140 ATTTTACTTAAGTTCTCCTCTCCTCTA 57.229 33.333 14.49 0.00 0.00 2.43
152 153 8.673456 ATTTTACTTAAGTTCTCCTCTCCTCT 57.327 34.615 14.49 0.00 0.00 3.69
153 154 9.157104 CAATTTTACTTAAGTTCTCCTCTCCTC 57.843 37.037 14.49 0.00 0.00 3.71
154 155 8.103935 CCAATTTTACTTAAGTTCTCCTCTCCT 58.896 37.037 14.49 0.00 0.00 3.69
155 156 8.101419 TCCAATTTTACTTAAGTTCTCCTCTCC 58.899 37.037 14.49 0.00 0.00 3.71
156 157 8.937884 GTCCAATTTTACTTAAGTTCTCCTCTC 58.062 37.037 14.49 0.00 0.00 3.20
157 158 7.603024 CGTCCAATTTTACTTAAGTTCTCCTCT 59.397 37.037 14.49 0.00 0.00 3.69
158 159 7.601508 TCGTCCAATTTTACTTAAGTTCTCCTC 59.398 37.037 14.49 0.00 0.00 3.71
159 160 7.447594 TCGTCCAATTTTACTTAAGTTCTCCT 58.552 34.615 14.49 0.00 0.00 3.69
160 161 7.662604 TCGTCCAATTTTACTTAAGTTCTCC 57.337 36.000 14.49 0.00 0.00 3.71
161 162 8.175716 CCATCGTCCAATTTTACTTAAGTTCTC 58.824 37.037 14.49 0.00 0.00 2.87
162 163 7.881232 TCCATCGTCCAATTTTACTTAAGTTCT 59.119 33.333 14.49 0.00 0.00 3.01
163 164 8.036273 TCCATCGTCCAATTTTACTTAAGTTC 57.964 34.615 14.49 0.00 0.00 3.01
164 165 7.989416 TCCATCGTCCAATTTTACTTAAGTT 57.011 32.000 14.49 0.00 0.00 2.66
165 166 7.827236 TCATCCATCGTCCAATTTTACTTAAGT 59.173 33.333 13.68 13.68 0.00 2.24
166 167 8.208718 TCATCCATCGTCCAATTTTACTTAAG 57.791 34.615 0.00 0.00 0.00 1.85
167 168 7.201696 GCTCATCCATCGTCCAATTTTACTTAA 60.202 37.037 0.00 0.00 0.00 1.85
168 169 6.260050 GCTCATCCATCGTCCAATTTTACTTA 59.740 38.462 0.00 0.00 0.00 2.24
169 170 5.066505 GCTCATCCATCGTCCAATTTTACTT 59.933 40.000 0.00 0.00 0.00 2.24
170 171 4.576463 GCTCATCCATCGTCCAATTTTACT 59.424 41.667 0.00 0.00 0.00 2.24
171 172 4.552767 CGCTCATCCATCGTCCAATTTTAC 60.553 45.833 0.00 0.00 0.00 2.01
172 173 3.559655 CGCTCATCCATCGTCCAATTTTA 59.440 43.478 0.00 0.00 0.00 1.52
173 174 2.355756 CGCTCATCCATCGTCCAATTTT 59.644 45.455 0.00 0.00 0.00 1.82
174 175 1.942657 CGCTCATCCATCGTCCAATTT 59.057 47.619 0.00 0.00 0.00 1.82
175 176 1.586422 CGCTCATCCATCGTCCAATT 58.414 50.000 0.00 0.00 0.00 2.32
176 177 0.250038 CCGCTCATCCATCGTCCAAT 60.250 55.000 0.00 0.00 0.00 3.16
177 178 1.143838 CCGCTCATCCATCGTCCAA 59.856 57.895 0.00 0.00 0.00 3.53
178 179 1.756561 TCCGCTCATCCATCGTCCA 60.757 57.895 0.00 0.00 0.00 4.02
179 180 1.300233 GTCCGCTCATCCATCGTCC 60.300 63.158 0.00 0.00 0.00 4.79
180 181 1.658717 CGTCCGCTCATCCATCGTC 60.659 63.158 0.00 0.00 0.00 4.20
181 182 2.119029 TCGTCCGCTCATCCATCGT 61.119 57.895 0.00 0.00 0.00 3.73
182 183 1.658717 GTCGTCCGCTCATCCATCG 60.659 63.158 0.00 0.00 0.00 3.84
183 184 0.596083 CTGTCGTCCGCTCATCCATC 60.596 60.000 0.00 0.00 0.00 3.51
184 185 1.037579 TCTGTCGTCCGCTCATCCAT 61.038 55.000 0.00 0.00 0.00 3.41
185 186 1.248101 TTCTGTCGTCCGCTCATCCA 61.248 55.000 0.00 0.00 0.00 3.41
186 187 0.802607 GTTCTGTCGTCCGCTCATCC 60.803 60.000 0.00 0.00 0.00 3.51
187 188 0.802607 GGTTCTGTCGTCCGCTCATC 60.803 60.000 0.00 0.00 0.00 2.92
188 189 1.215647 GGTTCTGTCGTCCGCTCAT 59.784 57.895 0.00 0.00 0.00 2.90
189 190 1.461091 AAGGTTCTGTCGTCCGCTCA 61.461 55.000 0.00 0.00 0.00 4.26
190 191 0.524862 TAAGGTTCTGTCGTCCGCTC 59.475 55.000 0.00 0.00 0.00 5.03
191 192 1.135083 CATAAGGTTCTGTCGTCCGCT 60.135 52.381 0.00 0.00 0.00 5.52
192 193 1.278238 CATAAGGTTCTGTCGTCCGC 58.722 55.000 0.00 0.00 0.00 5.54
193 194 1.135083 AGCATAAGGTTCTGTCGTCCG 60.135 52.381 0.00 0.00 0.00 4.79
194 195 2.166664 AGAGCATAAGGTTCTGTCGTCC 59.833 50.000 0.00 0.00 35.54 4.79
195 196 3.512033 AGAGCATAAGGTTCTGTCGTC 57.488 47.619 0.00 0.00 35.54 4.20
196 197 3.963428 AAGAGCATAAGGTTCTGTCGT 57.037 42.857 0.00 0.00 37.13 4.34
197 198 5.613358 AAAAAGAGCATAAGGTTCTGTCG 57.387 39.130 0.00 0.00 37.13 4.35
198 199 8.100508 ACTTAAAAAGAGCATAAGGTTCTGTC 57.899 34.615 0.00 0.00 37.13 3.51
199 200 9.220767 CTACTTAAAAAGAGCATAAGGTTCTGT 57.779 33.333 0.00 0.00 37.13 3.41
200 201 8.669243 CCTACTTAAAAAGAGCATAAGGTTCTG 58.331 37.037 0.00 0.00 37.13 3.02
201 202 8.603304 TCCTACTTAAAAAGAGCATAAGGTTCT 58.397 33.333 0.00 0.00 38.92 3.01
202 203 8.788325 TCCTACTTAAAAAGAGCATAAGGTTC 57.212 34.615 0.00 0.00 32.25 3.62
203 204 8.603304 TCTCCTACTTAAAAAGAGCATAAGGTT 58.397 33.333 0.00 0.00 32.25 3.50
204 205 8.147244 TCTCCTACTTAAAAAGAGCATAAGGT 57.853 34.615 0.00 0.00 32.25 3.50
205 206 8.478877 TCTCTCCTACTTAAAAAGAGCATAAGG 58.521 37.037 0.00 0.00 34.73 2.69
206 207 9.877178 TTCTCTCCTACTTAAAAAGAGCATAAG 57.123 33.333 0.00 0.00 34.73 1.73
210 211 9.823647 CATATTCTCTCCTACTTAAAAAGAGCA 57.176 33.333 0.00 0.00 34.73 4.26
211 212 9.267084 CCATATTCTCTCCTACTTAAAAAGAGC 57.733 37.037 0.00 0.00 34.73 4.09
212 213 9.771534 CCCATATTCTCTCCTACTTAAAAAGAG 57.228 37.037 0.00 0.00 35.80 2.85
213 214 8.211629 GCCCATATTCTCTCCTACTTAAAAAGA 58.788 37.037 0.00 0.00 0.00 2.52
214 215 8.214364 AGCCCATATTCTCTCCTACTTAAAAAG 58.786 37.037 0.00 0.00 0.00 2.27
215 216 7.993183 CAGCCCATATTCTCTCCTACTTAAAAA 59.007 37.037 0.00 0.00 0.00 1.94
216 217 7.347222 TCAGCCCATATTCTCTCCTACTTAAAA 59.653 37.037 0.00 0.00 0.00 1.52
217 218 6.844388 TCAGCCCATATTCTCTCCTACTTAAA 59.156 38.462 0.00 0.00 0.00 1.52
218 219 6.382087 TCAGCCCATATTCTCTCCTACTTAA 58.618 40.000 0.00 0.00 0.00 1.85
219 220 5.965486 TCAGCCCATATTCTCTCCTACTTA 58.035 41.667 0.00 0.00 0.00 2.24
220 221 4.820775 TCAGCCCATATTCTCTCCTACTT 58.179 43.478 0.00 0.00 0.00 2.24
221 222 4.107149 TCTCAGCCCATATTCTCTCCTACT 59.893 45.833 0.00 0.00 0.00 2.57
222 223 4.411927 TCTCAGCCCATATTCTCTCCTAC 58.588 47.826 0.00 0.00 0.00 3.18
223 224 4.749048 TCTCAGCCCATATTCTCTCCTA 57.251 45.455 0.00 0.00 0.00 2.94
224 225 3.627041 TCTCAGCCCATATTCTCTCCT 57.373 47.619 0.00 0.00 0.00 3.69
225 226 4.696479 TTTCTCAGCCCATATTCTCTCC 57.304 45.455 0.00 0.00 0.00 3.71
226 227 6.118852 AGTTTTTCTCAGCCCATATTCTCTC 58.881 40.000 0.00 0.00 0.00 3.20
227 228 6.072199 AGTTTTTCTCAGCCCATATTCTCT 57.928 37.500 0.00 0.00 0.00 3.10
228 229 6.375455 TCAAGTTTTTCTCAGCCCATATTCTC 59.625 38.462 0.00 0.00 0.00 2.87
229 230 6.248433 TCAAGTTTTTCTCAGCCCATATTCT 58.752 36.000 0.00 0.00 0.00 2.40
230 231 6.515272 TCAAGTTTTTCTCAGCCCATATTC 57.485 37.500 0.00 0.00 0.00 1.75
231 232 6.916360 TTCAAGTTTTTCTCAGCCCATATT 57.084 33.333 0.00 0.00 0.00 1.28
232 233 7.178983 TCAATTCAAGTTTTTCTCAGCCCATAT 59.821 33.333 0.00 0.00 0.00 1.78
233 234 6.493115 TCAATTCAAGTTTTTCTCAGCCCATA 59.507 34.615 0.00 0.00 0.00 2.74
234 235 5.305128 TCAATTCAAGTTTTTCTCAGCCCAT 59.695 36.000 0.00 0.00 0.00 4.00
235 236 4.648762 TCAATTCAAGTTTTTCTCAGCCCA 59.351 37.500 0.00 0.00 0.00 5.36
236 237 5.200368 TCAATTCAAGTTTTTCTCAGCCC 57.800 39.130 0.00 0.00 0.00 5.19
237 238 4.683320 GCTCAATTCAAGTTTTTCTCAGCC 59.317 41.667 0.00 0.00 0.00 4.85
238 239 5.527033 AGCTCAATTCAAGTTTTTCTCAGC 58.473 37.500 0.00 0.00 0.00 4.26
239 240 7.642669 TGTAGCTCAATTCAAGTTTTTCTCAG 58.357 34.615 0.00 0.00 0.00 3.35
240 241 7.566760 TGTAGCTCAATTCAAGTTTTTCTCA 57.433 32.000 0.00 0.00 0.00 3.27
241 242 9.468532 AAATGTAGCTCAATTCAAGTTTTTCTC 57.531 29.630 0.00 0.00 0.00 2.87
242 243 9.252962 CAAATGTAGCTCAATTCAAGTTTTTCT 57.747 29.630 0.00 0.00 0.00 2.52
243 244 8.006027 GCAAATGTAGCTCAATTCAAGTTTTTC 58.994 33.333 0.00 0.00 0.00 2.29
244 245 7.495279 TGCAAATGTAGCTCAATTCAAGTTTTT 59.505 29.630 0.00 0.00 0.00 1.94
245 246 6.985645 TGCAAATGTAGCTCAATTCAAGTTTT 59.014 30.769 0.00 0.00 0.00 2.43
246 247 6.514947 TGCAAATGTAGCTCAATTCAAGTTT 58.485 32.000 0.00 0.00 0.00 2.66
247 248 6.016024 TCTGCAAATGTAGCTCAATTCAAGTT 60.016 34.615 0.00 0.00 0.00 2.66
248 249 5.474532 TCTGCAAATGTAGCTCAATTCAAGT 59.525 36.000 0.00 0.00 0.00 3.16
249 250 5.946298 TCTGCAAATGTAGCTCAATTCAAG 58.054 37.500 0.00 0.00 0.00 3.02
250 251 5.963176 TCTGCAAATGTAGCTCAATTCAA 57.037 34.783 0.00 0.00 0.00 2.69
251 252 5.241285 TGTTCTGCAAATGTAGCTCAATTCA 59.759 36.000 0.00 0.00 0.00 2.57
252 253 5.702865 TGTTCTGCAAATGTAGCTCAATTC 58.297 37.500 0.00 0.00 0.00 2.17
253 254 5.710513 TGTTCTGCAAATGTAGCTCAATT 57.289 34.783 0.00 0.00 0.00 2.32
254 255 5.710513 TTGTTCTGCAAATGTAGCTCAAT 57.289 34.783 0.00 0.00 33.53 2.57
255 256 5.512753 TTTGTTCTGCAAATGTAGCTCAA 57.487 34.783 0.00 0.28 41.68 3.02
265 266 5.241506 CCTATCCTTGAGTTTGTTCTGCAAA 59.758 40.000 0.00 0.00 44.05 3.68
266 267 4.761739 CCTATCCTTGAGTTTGTTCTGCAA 59.238 41.667 0.00 0.00 34.87 4.08
267 268 4.202461 ACCTATCCTTGAGTTTGTTCTGCA 60.202 41.667 0.00 0.00 0.00 4.41
268 269 4.154918 CACCTATCCTTGAGTTTGTTCTGC 59.845 45.833 0.00 0.00 0.00 4.26
269 270 4.154918 GCACCTATCCTTGAGTTTGTTCTG 59.845 45.833 0.00 0.00 0.00 3.02
270 271 4.202461 TGCACCTATCCTTGAGTTTGTTCT 60.202 41.667 0.00 0.00 0.00 3.01
271 272 4.072131 TGCACCTATCCTTGAGTTTGTTC 58.928 43.478 0.00 0.00 0.00 3.18
272 273 4.098914 TGCACCTATCCTTGAGTTTGTT 57.901 40.909 0.00 0.00 0.00 2.83
273 274 3.788227 TGCACCTATCCTTGAGTTTGT 57.212 42.857 0.00 0.00 0.00 2.83
274 275 4.520492 ACTTTGCACCTATCCTTGAGTTTG 59.480 41.667 0.00 0.00 0.00 2.93
275 276 4.729868 ACTTTGCACCTATCCTTGAGTTT 58.270 39.130 0.00 0.00 0.00 2.66
276 277 4.373156 ACTTTGCACCTATCCTTGAGTT 57.627 40.909 0.00 0.00 0.00 3.01
277 278 4.373156 AACTTTGCACCTATCCTTGAGT 57.627 40.909 0.00 0.00 0.00 3.41
278 279 6.173339 TCTTAACTTTGCACCTATCCTTGAG 58.827 40.000 0.00 0.00 0.00 3.02
279 280 6.121776 TCTTAACTTTGCACCTATCCTTGA 57.878 37.500 0.00 0.00 0.00 3.02
280 281 6.817765 TTCTTAACTTTGCACCTATCCTTG 57.182 37.500 0.00 0.00 0.00 3.61
281 282 9.528489 TTATTTCTTAACTTTGCACCTATCCTT 57.472 29.630 0.00 0.00 0.00 3.36
282 283 9.700831 ATTATTTCTTAACTTTGCACCTATCCT 57.299 29.630 0.00 0.00 0.00 3.24
300 301 9.788960 GGAATGCTTTCGAACTTAATTATTTCT 57.211 29.630 0.00 0.00 32.28 2.52
301 302 9.567848 TGGAATGCTTTCGAACTTAATTATTTC 57.432 29.630 0.00 0.00 32.28 2.17
302 303 9.921637 TTGGAATGCTTTCGAACTTAATTATTT 57.078 25.926 0.00 0.00 32.28 1.40
303 304 9.573133 CTTGGAATGCTTTCGAACTTAATTATT 57.427 29.630 0.00 0.00 32.28 1.40
304 305 8.956426 TCTTGGAATGCTTTCGAACTTAATTAT 58.044 29.630 0.00 0.00 32.28 1.28
305 306 8.330466 TCTTGGAATGCTTTCGAACTTAATTA 57.670 30.769 0.00 0.00 32.28 1.40
306 307 7.214467 TCTTGGAATGCTTTCGAACTTAATT 57.786 32.000 0.00 0.00 32.28 1.40
307 308 6.127897 CCTCTTGGAATGCTTTCGAACTTAAT 60.128 38.462 0.00 0.00 34.57 1.40
308 309 5.181245 CCTCTTGGAATGCTTTCGAACTTAA 59.819 40.000 0.00 0.00 34.57 1.85
309 310 4.695455 CCTCTTGGAATGCTTTCGAACTTA 59.305 41.667 0.00 0.00 34.57 2.24
310 311 3.503748 CCTCTTGGAATGCTTTCGAACTT 59.496 43.478 0.00 0.00 34.57 2.66
311 312 3.077359 CCTCTTGGAATGCTTTCGAACT 58.923 45.455 0.00 0.00 34.57 3.01
312 313 2.414691 GCCTCTTGGAATGCTTTCGAAC 60.415 50.000 0.00 0.00 34.57 3.95
313 314 1.812571 GCCTCTTGGAATGCTTTCGAA 59.187 47.619 9.00 9.00 34.57 3.71
314 315 1.003580 AGCCTCTTGGAATGCTTTCGA 59.996 47.619 6.28 0.00 34.57 3.71
315 316 1.457346 AGCCTCTTGGAATGCTTTCG 58.543 50.000 6.28 0.00 34.57 3.46
318 319 4.161001 CCATTAAAGCCTCTTGGAATGCTT 59.839 41.667 0.00 0.00 45.40 3.91
319 320 3.703052 CCATTAAAGCCTCTTGGAATGCT 59.297 43.478 8.06 0.00 35.08 3.79
320 321 3.181472 CCCATTAAAGCCTCTTGGAATGC 60.181 47.826 0.00 0.00 34.57 3.56
321 322 4.280819 TCCCATTAAAGCCTCTTGGAATG 58.719 43.478 0.00 7.15 34.57 2.67
322 323 4.608170 TCCCATTAAAGCCTCTTGGAAT 57.392 40.909 0.00 0.00 34.57 3.01
323 324 4.264352 ACATCCCATTAAAGCCTCTTGGAA 60.264 41.667 0.00 0.00 34.57 3.53
324 325 3.269381 ACATCCCATTAAAGCCTCTTGGA 59.731 43.478 0.00 0.00 34.57 3.53
325 326 3.382546 CACATCCCATTAAAGCCTCTTGG 59.617 47.826 0.00 0.00 0.00 3.61
326 327 3.382546 CCACATCCCATTAAAGCCTCTTG 59.617 47.826 0.00 0.00 0.00 3.02
327 328 3.269381 TCCACATCCCATTAAAGCCTCTT 59.731 43.478 0.00 0.00 0.00 2.85
328 329 2.852449 TCCACATCCCATTAAAGCCTCT 59.148 45.455 0.00 0.00 0.00 3.69
329 330 3.117888 TCTCCACATCCCATTAAAGCCTC 60.118 47.826 0.00 0.00 0.00 4.70
330 331 2.852449 TCTCCACATCCCATTAAAGCCT 59.148 45.455 0.00 0.00 0.00 4.58
331 332 3.297134 TCTCCACATCCCATTAAAGCC 57.703 47.619 0.00 0.00 0.00 4.35
332 333 5.859205 AAATCTCCACATCCCATTAAAGC 57.141 39.130 0.00 0.00 0.00 3.51
333 334 6.809869 GGAAAATCTCCACATCCCATTAAAG 58.190 40.000 0.00 0.00 44.67 1.85
334 335 6.790232 GGAAAATCTCCACATCCCATTAAA 57.210 37.500 0.00 0.00 44.67 1.52
347 348 4.576879 ACCTACTCGTTTGGAAAATCTCC 58.423 43.478 0.00 0.00 45.64 3.71
348 349 7.201617 CCATTACCTACTCGTTTGGAAAATCTC 60.202 40.741 0.00 0.00 0.00 2.75
349 350 6.598064 CCATTACCTACTCGTTTGGAAAATCT 59.402 38.462 0.00 0.00 0.00 2.40
350 351 6.596497 TCCATTACCTACTCGTTTGGAAAATC 59.404 38.462 0.00 0.00 29.02 2.17
351 352 6.478129 TCCATTACCTACTCGTTTGGAAAAT 58.522 36.000 0.00 0.00 29.02 1.82
352 353 5.867330 TCCATTACCTACTCGTTTGGAAAA 58.133 37.500 0.00 0.00 29.02 2.29
353 354 5.484715 CTCCATTACCTACTCGTTTGGAAA 58.515 41.667 0.00 0.00 30.72 3.13
354 355 4.622220 GCTCCATTACCTACTCGTTTGGAA 60.622 45.833 0.00 0.00 30.72 3.53
355 356 3.118884 GCTCCATTACCTACTCGTTTGGA 60.119 47.826 0.00 0.00 0.00 3.53
356 357 3.118738 AGCTCCATTACCTACTCGTTTGG 60.119 47.826 0.00 0.00 0.00 3.28
357 358 3.865745 CAGCTCCATTACCTACTCGTTTG 59.134 47.826 0.00 0.00 0.00 2.93
358 359 3.118738 CCAGCTCCATTACCTACTCGTTT 60.119 47.826 0.00 0.00 0.00 3.60
359 360 2.431057 CCAGCTCCATTACCTACTCGTT 59.569 50.000 0.00 0.00 0.00 3.85
360 361 2.032620 CCAGCTCCATTACCTACTCGT 58.967 52.381 0.00 0.00 0.00 4.18
361 362 2.032620 ACCAGCTCCATTACCTACTCG 58.967 52.381 0.00 0.00 0.00 4.18
362 363 2.483889 GCACCAGCTCCATTACCTACTC 60.484 54.545 0.00 0.00 37.91 2.59
363 364 1.486726 GCACCAGCTCCATTACCTACT 59.513 52.381 0.00 0.00 37.91 2.57
364 365 1.209504 TGCACCAGCTCCATTACCTAC 59.790 52.381 0.00 0.00 42.74 3.18
365 366 1.578897 TGCACCAGCTCCATTACCTA 58.421 50.000 0.00 0.00 42.74 3.08
366 367 0.698238 TTGCACCAGCTCCATTACCT 59.302 50.000 0.00 0.00 42.74 3.08
367 368 1.474077 CTTTGCACCAGCTCCATTACC 59.526 52.381 0.00 0.00 42.74 2.85
368 369 1.474077 CCTTTGCACCAGCTCCATTAC 59.526 52.381 0.00 0.00 42.74 1.89
369 370 1.354031 TCCTTTGCACCAGCTCCATTA 59.646 47.619 0.00 0.00 42.74 1.90
370 371 0.112995 TCCTTTGCACCAGCTCCATT 59.887 50.000 0.00 0.00 42.74 3.16
371 372 0.323178 CTCCTTTGCACCAGCTCCAT 60.323 55.000 0.00 0.00 42.74 3.41
372 373 1.073722 CTCCTTTGCACCAGCTCCA 59.926 57.895 0.00 0.00 42.74 3.86
373 374 0.034670 ATCTCCTTTGCACCAGCTCC 60.035 55.000 0.00 0.00 42.74 4.70
374 375 2.698855 TATCTCCTTTGCACCAGCTC 57.301 50.000 0.00 0.00 42.74 4.09
375 376 3.659183 ATTATCTCCTTTGCACCAGCT 57.341 42.857 0.00 0.00 42.74 4.24
376 377 5.300286 ACATAATTATCTCCTTTGCACCAGC 59.700 40.000 0.00 0.00 42.57 4.85
377 378 6.949352 ACATAATTATCTCCTTTGCACCAG 57.051 37.500 0.00 0.00 0.00 4.00
378 379 7.716799 AAACATAATTATCTCCTTTGCACCA 57.283 32.000 0.00 0.00 0.00 4.17
424 425 9.485206 AAAACTCACGTAAGAATATACAACAGT 57.515 29.630 0.00 0.00 43.62 3.55
425 426 9.953825 GAAAACTCACGTAAGAATATACAACAG 57.046 33.333 0.00 0.00 43.62 3.16
426 427 8.928733 GGAAAACTCACGTAAGAATATACAACA 58.071 33.333 0.00 0.00 43.62 3.33
427 428 8.928733 TGGAAAACTCACGTAAGAATATACAAC 58.071 33.333 0.00 0.00 43.62 3.32
428 429 9.491675 TTGGAAAACTCACGTAAGAATATACAA 57.508 29.630 0.00 0.00 43.62 2.41
429 430 8.928733 GTTGGAAAACTCACGTAAGAATATACA 58.071 33.333 0.00 0.00 43.62 2.29
430 431 9.148104 AGTTGGAAAACTCACGTAAGAATATAC 57.852 33.333 0.00 0.00 43.62 1.47
432 433 9.148104 GTAGTTGGAAAACTCACGTAAGAATAT 57.852 33.333 0.00 0.00 36.17 1.28
433 434 8.143193 TGTAGTTGGAAAACTCACGTAAGAATA 58.857 33.333 0.00 0.00 36.17 1.75
434 435 6.987992 TGTAGTTGGAAAACTCACGTAAGAAT 59.012 34.615 0.00 0.00 36.17 2.40
435 436 6.256321 GTGTAGTTGGAAAACTCACGTAAGAA 59.744 38.462 0.00 0.00 36.17 2.52
436 437 5.750067 GTGTAGTTGGAAAACTCACGTAAGA 59.250 40.000 0.00 0.00 36.17 2.10
437 438 5.751990 AGTGTAGTTGGAAAACTCACGTAAG 59.248 40.000 0.00 0.00 36.67 2.34
438 439 5.663456 AGTGTAGTTGGAAAACTCACGTAA 58.337 37.500 0.00 0.00 36.67 3.18
439 440 5.266733 AGTGTAGTTGGAAAACTCACGTA 57.733 39.130 0.00 0.00 36.67 3.57
440 441 4.133013 AGTGTAGTTGGAAAACTCACGT 57.867 40.909 0.00 0.00 36.67 4.49
441 442 5.479716 AAAGTGTAGTTGGAAAACTCACG 57.520 39.130 0.00 0.00 36.67 4.35
442 443 6.848451 TGAAAAGTGTAGTTGGAAAACTCAC 58.152 36.000 0.00 4.31 34.27 3.51
443 444 7.455641 TTGAAAAGTGTAGTTGGAAAACTCA 57.544 32.000 0.00 0.00 34.37 3.41
444 445 8.751302 TTTTGAAAAGTGTAGTTGGAAAACTC 57.249 30.769 0.00 0.00 34.37 3.01
445 446 9.150348 CATTTTGAAAAGTGTAGTTGGAAAACT 57.850 29.630 0.00 0.00 36.82 2.66
446 447 8.387354 CCATTTTGAAAAGTGTAGTTGGAAAAC 58.613 33.333 0.00 0.00 0.00 2.43
447 448 7.065204 GCCATTTTGAAAAGTGTAGTTGGAAAA 59.935 33.333 8.04 0.00 0.00 2.29
452 453 5.277825 TCGCCATTTTGAAAAGTGTAGTTG 58.722 37.500 0.00 0.00 0.00 3.16
459 460 6.866480 ACATATCATCGCCATTTTGAAAAGT 58.134 32.000 0.00 0.00 0.00 2.66
460 461 9.467258 AATACATATCATCGCCATTTTGAAAAG 57.533 29.630 0.00 0.00 0.00 2.27
481 482 9.513906 TCATTTGTCTCCTTTTGTGATAATACA 57.486 29.630 0.00 0.00 0.00 2.29
513 515 9.691362 TCCATAACTTGAAACTTCTTAAATTGC 57.309 29.630 0.00 0.00 0.00 3.56
555 557 8.128582 TCATCTCAAAACCATAATGTATTTCGC 58.871 33.333 0.00 0.00 0.00 4.70
562 566 8.324306 TCTCTCTTCATCTCAAAACCATAATGT 58.676 33.333 0.00 0.00 0.00 2.71
1028 1183 5.541953 TGGACTAGAGCTATCTACGTGTA 57.458 43.478 0.00 0.00 36.96 2.90
1326 1595 5.558653 GCATCGCAAAGAAGCAAATTTTTGA 60.559 36.000 7.21 0.00 42.63 2.69
1337 1606 1.805254 CCCCTGCATCGCAAAGAAG 59.195 57.895 0.00 0.00 38.41 2.85
1399 1682 1.412710 GGCGGTGTCTTGATCCTCATA 59.587 52.381 0.00 0.00 0.00 2.15
1454 1737 1.677576 ACCACATGTTGCAACACTCAG 59.322 47.619 33.29 23.61 42.51 3.35
1504 1787 7.737972 TTCGTCATCAAACTAAAGGAAATGA 57.262 32.000 0.00 0.00 0.00 2.57
1525 1808 7.746916 CCGACAATATCTGACTTCTAGTATTCG 59.253 40.741 0.00 0.00 0.00 3.34
1546 1829 4.182693 AGAATTACAATCACGACCGACA 57.817 40.909 0.00 0.00 0.00 4.35
1547 1830 4.201685 CCAAGAATTACAATCACGACCGAC 60.202 45.833 0.00 0.00 0.00 4.79
1548 1831 3.930229 CCAAGAATTACAATCACGACCGA 59.070 43.478 0.00 0.00 0.00 4.69
1549 1832 3.063452 CCCAAGAATTACAATCACGACCG 59.937 47.826 0.00 0.00 0.00 4.79
1550 1833 3.181500 GCCCAAGAATTACAATCACGACC 60.181 47.826 0.00 0.00 0.00 4.79
1551 1834 3.485216 CGCCCAAGAATTACAATCACGAC 60.485 47.826 0.00 0.00 0.00 4.34
1552 1835 2.675844 CGCCCAAGAATTACAATCACGA 59.324 45.455 0.00 0.00 0.00 4.35
1553 1836 2.675844 TCGCCCAAGAATTACAATCACG 59.324 45.455 0.00 0.00 0.00 4.35
1554 1837 4.900635 ATCGCCCAAGAATTACAATCAC 57.099 40.909 0.00 0.00 0.00 3.06
1555 1838 4.946772 TCAATCGCCCAAGAATTACAATCA 59.053 37.500 0.00 0.00 0.00 2.57
1556 1839 5.066505 ACTCAATCGCCCAAGAATTACAATC 59.933 40.000 0.00 0.00 0.00 2.67
1557 1840 4.949856 ACTCAATCGCCCAAGAATTACAAT 59.050 37.500 0.00 0.00 0.00 2.71
1558 1841 4.331968 ACTCAATCGCCCAAGAATTACAA 58.668 39.130 0.00 0.00 0.00 2.41
1559 1842 3.950397 ACTCAATCGCCCAAGAATTACA 58.050 40.909 0.00 0.00 0.00 2.41
1560 1843 6.619801 ATTACTCAATCGCCCAAGAATTAC 57.380 37.500 0.00 0.00 0.00 1.89
1561 1844 7.276658 TGTATTACTCAATCGCCCAAGAATTA 58.723 34.615 0.00 0.00 0.00 1.40
1562 1845 6.119536 TGTATTACTCAATCGCCCAAGAATT 58.880 36.000 0.00 0.00 0.00 2.17
1563 1846 5.680619 TGTATTACTCAATCGCCCAAGAAT 58.319 37.500 0.00 0.00 0.00 2.40
1564 1847 5.092554 TGTATTACTCAATCGCCCAAGAA 57.907 39.130 0.00 0.00 0.00 2.52
1565 1848 4.746535 TGTATTACTCAATCGCCCAAGA 57.253 40.909 0.00 0.00 0.00 3.02
1566 1849 4.876107 ACTTGTATTACTCAATCGCCCAAG 59.124 41.667 0.00 0.00 0.00 3.61
1567 1850 4.839121 ACTTGTATTACTCAATCGCCCAA 58.161 39.130 0.00 0.00 0.00 4.12
1568 1851 4.481368 ACTTGTATTACTCAATCGCCCA 57.519 40.909 0.00 0.00 0.00 5.36
1569 1852 8.773404 ATAATACTTGTATTACTCAATCGCCC 57.227 34.615 13.43 0.00 0.00 6.13
1570 1853 8.870879 GGATAATACTTGTATTACTCAATCGCC 58.129 37.037 13.43 4.65 0.00 5.54
1571 1854 8.870879 GGGATAATACTTGTATTACTCAATCGC 58.129 37.037 13.43 12.11 0.00 4.58
1572 1855 9.073368 CGGGATAATACTTGTATTACTCAATCG 57.927 37.037 13.43 12.19 0.00 3.34
1573 1856 8.870879 GCGGGATAATACTTGTATTACTCAATC 58.129 37.037 13.43 9.00 0.00 2.67
1574 1857 8.372459 TGCGGGATAATACTTGTATTACTCAAT 58.628 33.333 13.43 1.69 0.00 2.57
1575 1858 7.728148 TGCGGGATAATACTTGTATTACTCAA 58.272 34.615 13.43 0.00 0.00 3.02
1576 1859 7.292713 TGCGGGATAATACTTGTATTACTCA 57.707 36.000 13.43 6.63 0.00 3.41
1577 1860 8.597662 TTTGCGGGATAATACTTGTATTACTC 57.402 34.615 13.43 11.83 0.00 2.59
1578 1861 8.967664 TTTTGCGGGATAATACTTGTATTACT 57.032 30.769 13.43 5.67 0.00 2.24
1611 1894 8.847196 TGAGCTAGACGTACAAGATACATTTAT 58.153 33.333 0.00 0.00 0.00 1.40
1612 1895 8.127327 GTGAGCTAGACGTACAAGATACATTTA 58.873 37.037 0.00 0.00 0.00 1.40
1639 1933 0.609131 CACCTTGCTCGGGTTCCATT 60.609 55.000 0.00 0.00 34.44 3.16
1641 1935 2.144078 TCACCTTGCTCGGGTTCCA 61.144 57.895 0.00 0.00 34.44 3.53
1664 1958 3.334881 AGGAACTCCAAATCCACCTCATT 59.665 43.478 0.00 0.00 38.23 2.57
1747 2041 0.881796 CGTACCTCTGCTCACTGTCA 59.118 55.000 0.00 0.00 0.00 3.58
1753 2047 0.609406 ACAGCTCGTACCTCTGCTCA 60.609 55.000 0.00 0.00 33.03 4.26
1771 2065 3.112709 GCTCCAGCGTCGAACCAC 61.113 66.667 0.00 0.00 0.00 4.16
1783 2077 0.911769 AGTCATGGAAATCGGCTCCA 59.088 50.000 3.93 3.93 46.86 3.86
2042 2362 3.006940 TCGACCCTGTATTTGACATTGC 58.993 45.455 0.00 0.00 37.45 3.56
2048 2368 5.221106 CGGTTATAGTCGACCCTGTATTTGA 60.221 44.000 13.01 0.00 32.14 2.69
2100 2420 1.421485 GCAGCCATTGACGTCGAAG 59.579 57.895 10.11 5.19 0.00 3.79
2169 2489 2.586792 GGCGTCAGGCTCTGGATT 59.413 61.111 2.86 0.00 42.94 3.01
2424 2750 0.251634 CTGAAGAGGGCCTTGAGGTC 59.748 60.000 7.89 1.60 39.63 3.85
2551 2877 7.725844 GGAGAAAGAGAGGAGAGAGAAAGATAT 59.274 40.741 0.00 0.00 0.00 1.63
2565 2891 0.107752 GCTGCCTGGAGAAAGAGAGG 60.108 60.000 0.00 0.00 0.00 3.69
2986 3340 9.717942 GTTAATCTCATTTCTACAGCCATAGAT 57.282 33.333 0.00 0.00 31.25 1.98
3080 3434 7.624360 TTAGAGTTTGCCTAAACATACATGG 57.376 36.000 0.00 0.00 46.76 3.66
3143 3497 5.128827 GTCAGGATGGTTGGTATCTGAACTA 59.871 44.000 0.00 0.00 36.16 2.24
3174 3528 7.039574 CCATGGTAGAATTAATGGATGCATTCA 60.040 37.037 16.40 10.88 41.84 2.57
3195 3549 1.338105 TGAGCGAACAGAAGTCCATGG 60.338 52.381 4.97 4.97 0.00 3.66
3264 3618 3.708210 TGGCCCGTCCAGTCTTAG 58.292 61.111 0.00 0.00 40.72 2.18
3350 3704 2.457366 AACGACTTCCATCTGGACAC 57.543 50.000 0.00 0.00 45.39 3.67
3373 3727 1.893786 GCGGATCCACAGACTCAGT 59.106 57.895 13.41 0.00 0.00 3.41
3376 3730 2.583593 GCGCGGATCCACAGACTC 60.584 66.667 13.41 0.00 0.00 3.36
3390 3744 0.386226 GCCTCTAGACGTAGATGCGC 60.386 60.000 0.00 0.00 37.23 6.09
3399 3753 3.905678 CGCCCCTGCCTCTAGACG 61.906 72.222 0.00 0.00 0.00 4.18
3425 3779 0.748005 ATGTATGCGTTGTCTGCCCC 60.748 55.000 0.00 0.00 0.00 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.