Multiple sequence alignment - TraesCS3D01G083600
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3D01G083600
chr3D
100.000
3355
0
0
1
3355
42394518
42397872
0.000000e+00
6196.0
1
TraesCS3D01G083600
chr3B
92.035
1808
107
24
1568
3355
65336341
65334551
0.000000e+00
2507.0
2
TraesCS3D01G083600
chr3B
92.273
673
22
9
818
1475
65339336
65338679
0.000000e+00
928.0
3
TraesCS3D01G083600
chr3B
88.567
691
67
10
101
785
65340009
65339325
0.000000e+00
828.0
4
TraesCS3D01G083600
chr3B
79.310
319
51
14
3046
3354
70602509
70602196
3.390000e-50
209.0
5
TraesCS3D01G083600
chr3B
92.500
80
2
1
1475
1550
65336403
65336324
9.840000e-21
111.0
6
TraesCS3D01G083600
chr3B
77.941
136
16
12
142
268
248579716
248579586
4.640000e-09
73.1
7
TraesCS3D01G083600
chr6D
95.460
881
29
6
674
1550
18533024
18533897
0.000000e+00
1395.0
8
TraesCS3D01G083600
chr6D
94.557
643
33
2
1684
2326
18534339
18534979
0.000000e+00
992.0
9
TraesCS3D01G083600
chr6D
84.615
1014
114
24
1676
2679
455496883
455495902
0.000000e+00
970.0
10
TraesCS3D01G083600
chr6D
92.565
538
32
5
2380
2915
18534995
18535526
0.000000e+00
765.0
11
TraesCS3D01G083600
chr6D
88.462
520
36
11
1034
1545
455497383
455496880
1.030000e-169
606.0
12
TraesCS3D01G083600
chr6D
92.193
269
13
1
781
1041
455497820
455497552
1.140000e-99
374.0
13
TraesCS3D01G083600
chr6D
94.937
79
4
0
24
102
168772533
168772611
1.260000e-24
124.0
14
TraesCS3D01G083600
chr6D
84.375
96
13
2
1582
1677
457543739
457543832
3.560000e-15
93.5
15
TraesCS3D01G083600
chr6D
89.855
69
7
0
1372
1440
455498479
455498547
4.610000e-14
89.8
16
TraesCS3D01G083600
chr6B
84.433
1304
133
45
162
1439
692639623
692638364
0.000000e+00
1219.0
17
TraesCS3D01G083600
chr6B
85.452
598
75
8
1720
2314
692719320
692718732
2.210000e-171
612.0
18
TraesCS3D01G083600
chr6B
85.070
355
34
7
978
1327
692721115
692720775
8.910000e-91
344.0
19
TraesCS3D01G083600
chr6B
93.333
195
13
0
2120
2314
692638358
692638164
4.240000e-74
289.0
20
TraesCS3D01G083600
chr6B
83.333
198
14
8
1352
1545
692720674
692720492
7.450000e-37
165.0
21
TraesCS3D01G083600
chr6B
85.714
119
15
2
2330
2447
692718748
692718631
1.260000e-24
124.0
22
TraesCS3D01G083600
chr6B
84.314
102
15
1
1576
1677
160912486
160912386
7.660000e-17
99.0
23
TraesCS3D01G083600
chr6B
84.375
96
5
6
826
911
692721307
692721212
5.960000e-13
86.1
24
TraesCS3D01G083600
chr3A
95.994
649
23
3
1651
2298
53293848
53293202
0.000000e+00
1051.0
25
TraesCS3D01G083600
chr3A
84.036
877
73
30
2527
3355
53291453
53290596
0.000000e+00
782.0
26
TraesCS3D01G083600
chr3A
88.522
636
58
14
101
727
53295196
53294567
0.000000e+00
756.0
27
TraesCS3D01G083600
chr3A
95.175
456
9
5
756
1209
53294582
53294138
0.000000e+00
708.0
28
TraesCS3D01G083600
chr3A
97.326
187
5
0
1364
1550
53294058
53293872
5.400000e-83
318.0
29
TraesCS3D01G083600
chr3A
93.567
171
10
1
2360
2530
53293053
53292884
1.540000e-63
254.0
30
TraesCS3D01G083600
chr3A
83.835
266
33
9
3059
3317
42021872
42022134
9.300000e-61
244.0
31
TraesCS3D01G083600
chr6A
89.307
505
31
10
804
1286
602163148
602162645
2.210000e-171
612.0
32
TraesCS3D01G083600
chr6A
94.937
79
4
0
24
102
84439900
84439978
1.260000e-24
124.0
33
TraesCS3D01G083600
chr6A
94.937
79
4
0
24
102
608877485
608877407
1.260000e-24
124.0
34
TraesCS3D01G083600
chr6A
89.855
69
7
0
1372
1440
602164936
602165004
4.610000e-14
89.8
35
TraesCS3D01G083600
chr7D
81.481
297
45
10
3059
3348
58866640
58866347
5.600000e-58
235.0
36
TraesCS3D01G083600
chr7D
86.458
96
9
4
1582
1675
548272308
548272215
5.920000e-18
102.0
37
TraesCS3D01G083600
chr2D
83.071
254
38
5
3054
3304
166561726
166561977
3.370000e-55
226.0
38
TraesCS3D01G083600
chr2D
87.234
94
10
2
1586
1679
327958034
327958125
4.580000e-19
106.0
39
TraesCS3D01G083600
chr2D
88.372
86
9
1
1592
1677
45931746
45931662
5.920000e-18
102.0
40
TraesCS3D01G083600
chr2D
88.372
86
9
1
1592
1677
45953262
45953178
5.920000e-18
102.0
41
TraesCS3D01G083600
chr2D
88.372
86
9
1
1592
1677
45981023
45980939
5.920000e-18
102.0
42
TraesCS3D01G083600
chr2D
88.372
86
9
1
1592
1677
46000688
46000604
5.920000e-18
102.0
43
TraesCS3D01G083600
chr2D
88.372
86
9
1
1592
1677
46017032
46016948
5.920000e-18
102.0
44
TraesCS3D01G083600
chr2D
94.595
37
1
1
150
185
141107188
141107152
4.680000e-04
56.5
45
TraesCS3D01G083600
chr4B
80.936
299
43
12
3059
3348
651760230
651759937
1.210000e-54
224.0
46
TraesCS3D01G083600
chr4B
80.201
298
47
11
3059
3348
651093349
651093642
2.620000e-51
213.0
47
TraesCS3D01G083600
chr5B
81.338
284
41
11
3076
3351
237753410
237753689
1.570000e-53
220.0
48
TraesCS3D01G083600
chr5B
96.203
79
3
0
24
102
34071933
34072011
2.720000e-26
130.0
49
TraesCS3D01G083600
chr5B
83.333
102
17
0
1571
1672
464596795
464596694
9.910000e-16
95.3
50
TraesCS3D01G083600
chr2A
80.528
303
45
11
3057
3350
203897948
203897651
1.570000e-53
220.0
51
TraesCS3D01G083600
chrUn
94.937
79
4
0
24
102
86446325
86446403
1.260000e-24
124.0
52
TraesCS3D01G083600
chrUn
94.937
79
4
0
24
102
446320002
446320080
1.260000e-24
124.0
53
TraesCS3D01G083600
chr4D
94.937
79
4
0
24
102
123429464
123429542
1.260000e-24
124.0
54
TraesCS3D01G083600
chr4D
94.937
79
4
0
24
102
241217497
241217419
1.260000e-24
124.0
55
TraesCS3D01G083600
chr1A
94.937
79
4
0
24
102
94789060
94789138
1.260000e-24
124.0
56
TraesCS3D01G083600
chr5A
97.297
37
0
1
147
182
534277001
534277037
1.010000e-05
62.1
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3D01G083600
chr3D
42394518
42397872
3354
False
6196.000000
6196
100.000000
1
3355
1
chr3D.!!$F1
3354
1
TraesCS3D01G083600
chr3B
65334551
65340009
5458
True
1093.500000
2507
91.343750
101
3355
4
chr3B.!!$R3
3254
2
TraesCS3D01G083600
chr6D
18533024
18535526
2502
False
1050.666667
1395
94.194000
674
2915
3
chr6D.!!$F4
2241
3
TraesCS3D01G083600
chr6D
455495902
455497820
1918
True
650.000000
970
88.423333
781
2679
3
chr6D.!!$R1
1898
4
TraesCS3D01G083600
chr6B
692638164
692639623
1459
True
754.000000
1219
88.883000
162
2314
2
chr6B.!!$R2
2152
5
TraesCS3D01G083600
chr6B
692718631
692721307
2676
True
266.220000
612
84.788800
826
2447
5
chr6B.!!$R3
1621
6
TraesCS3D01G083600
chr3A
53290596
53295196
4600
True
644.833333
1051
92.436667
101
3355
6
chr3A.!!$R1
3254
7
TraesCS3D01G083600
chr6A
602162645
602163148
503
True
612.000000
612
89.307000
804
1286
1
chr6A.!!$R1
482
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
666
681
0.391661
ATTGACCGTGCTGCTGTAGG
60.392
55.0
0.0
1.54
0.00
3.18
F
1556
4271
0.472044
TGTTTACTGCTCCACCTGCA
59.528
50.0
0.0
0.00
38.81
4.41
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1587
4302
0.098728
GGACGCATGTTTTGGATCGG
59.901
55.0
0.00
0.0
0.0
4.18
R
2951
8779
0.179045
GGACACCGGGGATTGATCTG
60.179
60.0
12.96
0.0
0.0
2.90
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
27
28
9.896263
GCACTATAAACTACAGATTCTACTACC
57.104
37.037
0.00
0.00
0.00
3.18
29
30
9.282569
ACTATAAACTACAGATTCTACTACCCG
57.717
37.037
0.00
0.00
0.00
5.28
30
31
4.915158
AACTACAGATTCTACTACCCGC
57.085
45.455
0.00
0.00
0.00
6.13
31
32
3.220940
ACTACAGATTCTACTACCCGCC
58.779
50.000
0.00
0.00
0.00
6.13
32
33
2.456073
ACAGATTCTACTACCCGCCT
57.544
50.000
0.00
0.00
0.00
5.52
33
34
2.748388
ACAGATTCTACTACCCGCCTT
58.252
47.619
0.00
0.00
0.00
4.35
34
35
3.105283
ACAGATTCTACTACCCGCCTTT
58.895
45.455
0.00
0.00
0.00
3.11
35
36
4.284178
ACAGATTCTACTACCCGCCTTTA
58.716
43.478
0.00
0.00
0.00
1.85
36
37
4.900054
ACAGATTCTACTACCCGCCTTTAT
59.100
41.667
0.00
0.00
0.00
1.40
37
38
5.365895
ACAGATTCTACTACCCGCCTTTATT
59.634
40.000
0.00
0.00
0.00
1.40
38
39
5.696724
CAGATTCTACTACCCGCCTTTATTG
59.303
44.000
0.00
0.00
0.00
1.90
39
40
4.411256
TTCTACTACCCGCCTTTATTGG
57.589
45.455
0.00
0.00
0.00
3.16
40
41
3.377573
TCTACTACCCGCCTTTATTGGT
58.622
45.455
0.00
0.00
34.85
3.67
41
42
3.776417
TCTACTACCCGCCTTTATTGGTT
59.224
43.478
0.00
0.00
32.27
3.67
42
43
2.718563
ACTACCCGCCTTTATTGGTTG
58.281
47.619
0.00
0.00
32.27
3.77
43
44
2.306512
ACTACCCGCCTTTATTGGTTGA
59.693
45.455
0.00
0.00
32.27
3.18
44
45
2.525105
ACCCGCCTTTATTGGTTGAT
57.475
45.000
0.00
0.00
0.00
2.57
45
46
2.815158
ACCCGCCTTTATTGGTTGATT
58.185
42.857
0.00
0.00
0.00
2.57
46
47
3.970842
ACCCGCCTTTATTGGTTGATTA
58.029
40.909
0.00
0.00
0.00
1.75
47
48
4.345854
ACCCGCCTTTATTGGTTGATTAA
58.654
39.130
0.00
0.00
0.00
1.40
48
49
4.401202
ACCCGCCTTTATTGGTTGATTAAG
59.599
41.667
0.00
0.00
0.00
1.85
49
50
4.202111
CCCGCCTTTATTGGTTGATTAAGG
60.202
45.833
0.00
0.00
38.33
2.69
50
51
4.202111
CCGCCTTTATTGGTTGATTAAGGG
60.202
45.833
0.00
0.00
36.69
3.95
51
52
4.202111
CGCCTTTATTGGTTGATTAAGGGG
60.202
45.833
0.00
0.00
40.18
4.79
52
53
4.442893
GCCTTTATTGGTTGATTAAGGGGC
60.443
45.833
0.00
0.00
36.69
5.80
53
54
4.714308
CCTTTATTGGTTGATTAAGGGGCA
59.286
41.667
0.00
0.00
34.00
5.36
54
55
5.366477
CCTTTATTGGTTGATTAAGGGGCAT
59.634
40.000
0.00
0.00
34.00
4.40
55
56
6.126796
CCTTTATTGGTTGATTAAGGGGCATT
60.127
38.462
0.00
0.00
34.00
3.56
56
57
6.882768
TTATTGGTTGATTAAGGGGCATTT
57.117
33.333
0.00
0.00
0.00
2.32
57
58
7.979786
TTATTGGTTGATTAAGGGGCATTTA
57.020
32.000
0.00
0.00
0.00
1.40
58
59
5.669164
TTGGTTGATTAAGGGGCATTTAC
57.331
39.130
0.00
0.00
0.00
2.01
59
60
4.027437
TGGTTGATTAAGGGGCATTTACC
58.973
43.478
0.00
0.00
0.00
2.85
60
61
4.264623
TGGTTGATTAAGGGGCATTTACCT
60.265
41.667
0.00
0.00
39.21
3.08
61
62
5.044030
TGGTTGATTAAGGGGCATTTACCTA
60.044
40.000
0.00
0.00
35.64
3.08
62
63
6.075315
GGTTGATTAAGGGGCATTTACCTAT
58.925
40.000
0.00
0.00
35.64
2.57
63
64
6.208797
GGTTGATTAAGGGGCATTTACCTATC
59.791
42.308
0.00
0.00
35.64
2.08
64
65
6.523035
TGATTAAGGGGCATTTACCTATCA
57.477
37.500
0.00
0.00
35.64
2.15
65
66
6.542821
TGATTAAGGGGCATTTACCTATCAG
58.457
40.000
0.00
0.00
35.64
2.90
66
67
5.987019
TTAAGGGGCATTTACCTATCAGT
57.013
39.130
0.00
0.00
35.64
3.41
67
68
4.439253
AAGGGGCATTTACCTATCAGTC
57.561
45.455
0.00
0.00
35.64
3.51
68
69
2.711547
AGGGGCATTTACCTATCAGTCC
59.288
50.000
0.00
0.00
34.71
3.85
69
70
2.711547
GGGGCATTTACCTATCAGTCCT
59.288
50.000
0.00
0.00
0.00
3.85
70
71
3.908103
GGGGCATTTACCTATCAGTCCTA
59.092
47.826
0.00
0.00
0.00
2.94
71
72
4.020128
GGGGCATTTACCTATCAGTCCTAG
60.020
50.000
0.00
0.00
0.00
3.02
72
73
4.593634
GGGCATTTACCTATCAGTCCTAGT
59.406
45.833
0.00
0.00
0.00
2.57
73
74
5.279556
GGGCATTTACCTATCAGTCCTAGTC
60.280
48.000
0.00
0.00
0.00
2.59
74
75
5.279556
GGCATTTACCTATCAGTCCTAGTCC
60.280
48.000
0.00
0.00
0.00
3.85
75
76
5.540719
GCATTTACCTATCAGTCCTAGTCCT
59.459
44.000
0.00
0.00
0.00
3.85
76
77
6.720288
GCATTTACCTATCAGTCCTAGTCCTA
59.280
42.308
0.00
0.00
0.00
2.94
77
78
7.232941
GCATTTACCTATCAGTCCTAGTCCTAA
59.767
40.741
0.00
0.00
0.00
2.69
78
79
8.798402
CATTTACCTATCAGTCCTAGTCCTAAG
58.202
40.741
0.00
0.00
0.00
2.18
79
80
5.327737
ACCTATCAGTCCTAGTCCTAAGG
57.672
47.826
0.00
0.00
0.00
2.69
80
81
4.083565
CCTATCAGTCCTAGTCCTAAGGC
58.916
52.174
0.00
0.00
0.00
4.35
81
82
3.689872
ATCAGTCCTAGTCCTAAGGCA
57.310
47.619
0.00
0.00
0.00
4.75
82
83
2.736347
TCAGTCCTAGTCCTAAGGCAC
58.264
52.381
0.00
0.00
0.00
5.01
83
84
2.042569
TCAGTCCTAGTCCTAAGGCACA
59.957
50.000
0.00
0.00
0.00
4.57
84
85
2.832129
CAGTCCTAGTCCTAAGGCACAA
59.168
50.000
0.00
0.00
0.00
3.33
85
86
3.452627
CAGTCCTAGTCCTAAGGCACAAT
59.547
47.826
0.00
0.00
0.00
2.71
86
87
4.649674
CAGTCCTAGTCCTAAGGCACAATA
59.350
45.833
0.00
0.00
0.00
1.90
87
88
4.896482
AGTCCTAGTCCTAAGGCACAATAG
59.104
45.833
0.00
0.00
0.00
1.73
88
89
4.039366
GTCCTAGTCCTAAGGCACAATAGG
59.961
50.000
0.00
0.00
40.23
2.57
89
90
4.078805
TCCTAGTCCTAAGGCACAATAGGA
60.079
45.833
0.00
0.00
43.63
2.94
90
91
4.282195
CCTAGTCCTAAGGCACAATAGGAG
59.718
50.000
1.88
0.00
45.44
3.69
91
92
2.436173
AGTCCTAAGGCACAATAGGAGC
59.564
50.000
1.88
0.00
45.44
4.70
92
93
2.170607
GTCCTAAGGCACAATAGGAGCA
59.829
50.000
1.88
0.00
45.44
4.26
93
94
2.170607
TCCTAAGGCACAATAGGAGCAC
59.829
50.000
0.00
0.00
41.90
4.40
94
95
2.171448
CCTAAGGCACAATAGGAGCACT
59.829
50.000
0.00
0.00
41.00
4.40
95
96
3.388024
CCTAAGGCACAATAGGAGCACTA
59.612
47.826
0.00
0.00
41.00
2.74
96
97
4.141711
CCTAAGGCACAATAGGAGCACTAA
60.142
45.833
0.00
0.00
41.00
2.24
97
98
3.550437
AGGCACAATAGGAGCACTAAG
57.450
47.619
0.00
0.00
34.79
2.18
98
99
1.943340
GGCACAATAGGAGCACTAAGC
59.057
52.381
0.00
0.00
46.19
3.09
115
116
1.115326
AGCCCAGGAACCAGTTTTGC
61.115
55.000
0.00
0.00
0.00
3.68
139
140
3.721087
TCCATTCCCAGAAAGTTCCTC
57.279
47.619
0.00
0.00
0.00
3.71
149
150
3.960755
CAGAAAGTTCCTCCCTGGTTTTT
59.039
43.478
0.00
0.00
37.07
1.94
298
301
8.424274
AAATTCACCACTTTCAGAAAAATGTC
57.576
30.769
0.00
0.00
0.00
3.06
299
302
6.522625
TTCACCACTTTCAGAAAAATGTCA
57.477
33.333
0.00
0.00
0.00
3.58
301
304
6.563422
TCACCACTTTCAGAAAAATGTCAAG
58.437
36.000
0.00
0.00
0.00
3.02
302
305
6.376864
TCACCACTTTCAGAAAAATGTCAAGA
59.623
34.615
0.00
0.00
0.00
3.02
303
306
6.473455
CACCACTTTCAGAAAAATGTCAAGAC
59.527
38.462
0.00
0.00
0.00
3.01
306
310
7.433425
CCACTTTCAGAAAAATGTCAAGACTTC
59.567
37.037
1.53
0.00
0.00
3.01
464
470
9.528018
TTTCCAAAATAGTTCACAGATTCAAAC
57.472
29.630
0.00
0.00
0.00
2.93
509
518
5.537188
TGGATTTTTCTCAAAATGTTCCCG
58.463
37.500
0.00
0.00
41.79
5.14
519
530
8.810652
TCTCAAAATGTTCCCGATTTAAAAAG
57.189
30.769
0.00
0.00
0.00
2.27
590
602
3.618698
GTCTTCAAAGAACGTTCTTGGC
58.381
45.455
36.86
24.61
46.22
4.52
666
681
0.391661
ATTGACCGTGCTGCTGTAGG
60.392
55.000
0.00
1.54
0.00
3.18
681
697
2.987149
CTGTAGGTTGTTCGCTACACTG
59.013
50.000
0.00
0.00
36.21
3.66
703
719
3.002246
GCCCCGCAAAAGAAAAGAAAAAG
59.998
43.478
0.00
0.00
0.00
2.27
721
739
1.388547
AGAACACTTCAAGCGCCAAA
58.611
45.000
2.29
0.00
0.00
3.28
943
1000
2.045536
CACCTCCAAGCTCCAGCC
60.046
66.667
0.00
0.00
43.38
4.85
962
1027
3.631227
AGCCGCCTTCTATATATACGTCC
59.369
47.826
0.00
0.00
0.00
4.79
1318
1619
3.780902
TGCGATTCTTCAGCTCGATTAA
58.219
40.909
0.00
0.00
34.41
1.40
1403
1834
3.953775
CTGGACAAGGCCACCGGT
61.954
66.667
5.01
0.00
33.52
5.28
1550
4265
2.955660
CCCAACTTTGTTTACTGCTCCA
59.044
45.455
0.00
0.00
0.00
3.86
1551
4266
3.243401
CCCAACTTTGTTTACTGCTCCAC
60.243
47.826
0.00
0.00
0.00
4.02
1555
4270
1.604604
TTGTTTACTGCTCCACCTGC
58.395
50.000
0.00
0.00
0.00
4.85
1556
4271
0.472044
TGTTTACTGCTCCACCTGCA
59.528
50.000
0.00
0.00
38.81
4.41
1557
4272
1.133945
TGTTTACTGCTCCACCTGCAA
60.134
47.619
0.00
0.00
40.13
4.08
1558
4273
1.953686
GTTTACTGCTCCACCTGCAAA
59.046
47.619
0.00
0.00
40.13
3.68
1584
4299
7.827819
AAAAAGAAACTTTGTTTACTGCTCC
57.172
32.000
0.00
0.00
0.00
4.70
1586
4301
6.715347
AAGAAACTTTGTTTACTGCTCCAT
57.285
33.333
0.00
0.00
0.00
3.41
1587
4302
6.319141
AGAAACTTTGTTTACTGCTCCATC
57.681
37.500
0.00
0.00
0.00
3.51
1588
4303
5.241728
AGAAACTTTGTTTACTGCTCCATCC
59.758
40.000
0.00
0.00
0.00
3.51
1589
4304
3.074412
ACTTTGTTTACTGCTCCATCCG
58.926
45.455
0.00
0.00
0.00
4.18
1590
4305
3.244422
ACTTTGTTTACTGCTCCATCCGA
60.244
43.478
0.00
0.00
0.00
4.55
1591
4306
3.627395
TTGTTTACTGCTCCATCCGAT
57.373
42.857
0.00
0.00
0.00
4.18
1592
4307
3.179443
TGTTTACTGCTCCATCCGATC
57.821
47.619
0.00
0.00
0.00
3.69
1593
4308
2.158957
TGTTTACTGCTCCATCCGATCC
60.159
50.000
0.00
0.00
0.00
3.36
1594
4309
1.788229
TTACTGCTCCATCCGATCCA
58.212
50.000
0.00
0.00
0.00
3.41
1595
4310
1.788229
TACTGCTCCATCCGATCCAA
58.212
50.000
0.00
0.00
0.00
3.53
1598
4313
1.672881
CTGCTCCATCCGATCCAAAAC
59.327
52.381
0.00
0.00
0.00
2.43
1599
4314
1.004161
TGCTCCATCCGATCCAAAACA
59.996
47.619
0.00
0.00
0.00
2.83
1601
4316
2.033801
GCTCCATCCGATCCAAAACATG
59.966
50.000
0.00
0.00
0.00
3.21
1602
4317
2.023673
TCCATCCGATCCAAAACATGC
58.976
47.619
0.00
0.00
0.00
4.06
1606
4329
0.098728
CCGATCCAAAACATGCGTCC
59.901
55.000
0.00
0.00
0.00
4.79
1610
4333
0.671251
TCCAAAACATGCGTCCCAAC
59.329
50.000
0.00
0.00
0.00
3.77
1611
4334
0.673437
CCAAAACATGCGTCCCAACT
59.327
50.000
0.00
0.00
0.00
3.16
1628
4351
7.172019
CGTCCCAACTTTAGTACAACTTTGTAT
59.828
37.037
5.16
0.00
44.59
2.29
1666
4756
9.342308
TGAAATTGAGACACTTATTTTGAGACT
57.658
29.630
0.00
0.00
0.00
3.24
1669
4759
7.953158
TTGAGACACTTATTTTGAGACTGAG
57.047
36.000
0.00
0.00
0.00
3.35
1670
4760
6.459066
TGAGACACTTATTTTGAGACTGAGG
58.541
40.000
0.00
0.00
0.00
3.86
1901
6131
5.069119
ACTCGAGATATGTGCCAAGATACAA
59.931
40.000
21.68
0.00
0.00
2.41
2030
6260
4.500116
GGGAGCCAGTCGACTCGC
62.500
72.222
25.32
25.32
38.47
5.03
2113
6343
3.684305
CACATCGTGCCAAGTTCTTATCA
59.316
43.478
0.00
0.00
0.00
2.15
2164
6394
4.022242
TCAAAAGAACGTTGTTTTCCCACA
60.022
37.500
27.47
10.89
32.17
4.17
2394
6758
3.198635
CCATATACCATGTGGGAGCTAGG
59.801
52.174
3.77
0.00
37.83
3.02
2407
6771
4.656112
TGGGAGCTAGGAAGGAGAATTTAG
59.344
45.833
0.00
0.00
0.00
1.85
2453
6817
2.087646
GAGGCCAAAACTCTAAGGCTG
58.912
52.381
5.01
0.00
46.23
4.85
2661
8462
3.436001
CGGAGCGTGAACCATAACT
57.564
52.632
0.00
0.00
0.00
2.24
2718
8530
4.499037
AAAGGCGTGAACCATAACTTTC
57.501
40.909
0.00
0.00
0.00
2.62
2865
8685
0.667792
GCGAGTCGGCAGAAAGTCTT
60.668
55.000
15.52
0.00
0.00
3.01
2967
8797
1.149174
CCCAGATCAATCCCCGGTG
59.851
63.158
0.00
0.00
0.00
4.94
2974
8804
2.610859
AATCCCCGGTGTCCAGCT
60.611
61.111
0.00
0.00
0.00
4.24
2988
8818
2.097038
CAGCTAGTTCGCAAGCGCT
61.097
57.895
2.64
2.64
43.63
5.92
3055
8886
6.292919
GGACGTGTCCTATTTATGCTCAATTC
60.293
42.308
11.81
0.00
46.16
2.17
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
1
2
9.896263
GGTAGTAGAATCTGTAGTTTATAGTGC
57.104
37.037
0.00
0.00
0.00
4.40
3
4
9.282569
CGGGTAGTAGAATCTGTAGTTTATAGT
57.717
37.037
0.00
0.00
0.00
2.12
4
5
8.235905
GCGGGTAGTAGAATCTGTAGTTTATAG
58.764
40.741
0.00
0.00
0.00
1.31
5
6
7.175641
GGCGGGTAGTAGAATCTGTAGTTTATA
59.824
40.741
0.00
0.00
0.00
0.98
6
7
6.015603
GGCGGGTAGTAGAATCTGTAGTTTAT
60.016
42.308
0.00
0.00
0.00
1.40
7
8
5.300286
GGCGGGTAGTAGAATCTGTAGTTTA
59.700
44.000
0.00
0.00
0.00
2.01
8
9
4.099113
GGCGGGTAGTAGAATCTGTAGTTT
59.901
45.833
0.00
0.00
0.00
2.66
9
10
3.635836
GGCGGGTAGTAGAATCTGTAGTT
59.364
47.826
0.00
0.00
0.00
2.24
10
11
3.117587
AGGCGGGTAGTAGAATCTGTAGT
60.118
47.826
0.00
0.00
0.00
2.73
11
12
3.488363
AGGCGGGTAGTAGAATCTGTAG
58.512
50.000
0.00
0.00
0.00
2.74
12
13
3.589951
AGGCGGGTAGTAGAATCTGTA
57.410
47.619
0.00
0.00
0.00
2.74
13
14
2.456073
AGGCGGGTAGTAGAATCTGT
57.544
50.000
0.00
0.00
0.00
3.41
14
15
3.821421
AAAGGCGGGTAGTAGAATCTG
57.179
47.619
0.00
0.00
0.00
2.90
15
16
5.221661
CCAATAAAGGCGGGTAGTAGAATCT
60.222
44.000
0.00
0.00
0.00
2.40
16
17
4.995487
CCAATAAAGGCGGGTAGTAGAATC
59.005
45.833
0.00
0.00
0.00
2.52
17
18
4.411212
ACCAATAAAGGCGGGTAGTAGAAT
59.589
41.667
0.00
0.00
0.00
2.40
18
19
3.776417
ACCAATAAAGGCGGGTAGTAGAA
59.224
43.478
0.00
0.00
0.00
2.10
19
20
3.377573
ACCAATAAAGGCGGGTAGTAGA
58.622
45.455
0.00
0.00
0.00
2.59
20
21
3.832615
ACCAATAAAGGCGGGTAGTAG
57.167
47.619
0.00
0.00
0.00
2.57
21
22
3.518705
TCAACCAATAAAGGCGGGTAGTA
59.481
43.478
0.00
0.00
32.21
1.82
22
23
2.306512
TCAACCAATAAAGGCGGGTAGT
59.693
45.455
0.00
0.00
32.21
2.73
23
24
2.993937
TCAACCAATAAAGGCGGGTAG
58.006
47.619
0.00
0.00
32.21
3.18
24
25
3.655615
ATCAACCAATAAAGGCGGGTA
57.344
42.857
0.00
0.00
32.21
3.69
25
26
2.525105
ATCAACCAATAAAGGCGGGT
57.475
45.000
0.00
0.00
34.43
5.28
26
27
4.202111
CCTTAATCAACCAATAAAGGCGGG
60.202
45.833
0.00
0.00
0.00
6.13
27
28
4.202111
CCCTTAATCAACCAATAAAGGCGG
60.202
45.833
0.00
0.00
33.63
6.13
28
29
4.202111
CCCCTTAATCAACCAATAAAGGCG
60.202
45.833
0.00
0.00
33.63
5.52
29
30
4.442893
GCCCCTTAATCAACCAATAAAGGC
60.443
45.833
0.00
0.00
33.63
4.35
30
31
4.714308
TGCCCCTTAATCAACCAATAAAGG
59.286
41.667
0.00
0.00
34.54
3.11
31
32
5.930837
TGCCCCTTAATCAACCAATAAAG
57.069
39.130
0.00
0.00
0.00
1.85
32
33
6.882768
AATGCCCCTTAATCAACCAATAAA
57.117
33.333
0.00
0.00
0.00
1.40
33
34
6.882768
AAATGCCCCTTAATCAACCAATAA
57.117
33.333
0.00
0.00
0.00
1.40
34
35
6.325286
GGTAAATGCCCCTTAATCAACCAATA
59.675
38.462
0.00
0.00
0.00
1.90
35
36
5.130311
GGTAAATGCCCCTTAATCAACCAAT
59.870
40.000
0.00
0.00
0.00
3.16
36
37
4.468153
GGTAAATGCCCCTTAATCAACCAA
59.532
41.667
0.00
0.00
0.00
3.67
37
38
4.027437
GGTAAATGCCCCTTAATCAACCA
58.973
43.478
0.00
0.00
0.00
3.67
38
39
4.286707
AGGTAAATGCCCCTTAATCAACC
58.713
43.478
0.00
0.00
0.00
3.77
39
40
6.775629
TGATAGGTAAATGCCCCTTAATCAAC
59.224
38.462
0.00
0.00
27.83
3.18
40
41
6.916909
TGATAGGTAAATGCCCCTTAATCAA
58.083
36.000
0.00
0.00
27.83
2.57
41
42
6.102615
ACTGATAGGTAAATGCCCCTTAATCA
59.897
38.462
0.00
0.00
32.08
2.57
42
43
6.543735
ACTGATAGGTAAATGCCCCTTAATC
58.456
40.000
0.00
0.00
32.08
1.75
43
44
6.467339
GGACTGATAGGTAAATGCCCCTTAAT
60.467
42.308
0.00
0.00
32.08
1.40
44
45
5.163131
GGACTGATAGGTAAATGCCCCTTAA
60.163
44.000
0.00
0.00
32.08
1.85
45
46
4.349930
GGACTGATAGGTAAATGCCCCTTA
59.650
45.833
0.00
0.00
32.08
2.69
46
47
3.138468
GGACTGATAGGTAAATGCCCCTT
59.862
47.826
0.00
0.00
32.08
3.95
47
48
2.711547
GGACTGATAGGTAAATGCCCCT
59.288
50.000
0.00
0.00
34.74
4.79
48
49
2.711547
AGGACTGATAGGTAAATGCCCC
59.288
50.000
0.00
0.00
0.00
5.80
49
50
4.593634
ACTAGGACTGATAGGTAAATGCCC
59.406
45.833
0.00
0.00
0.00
5.36
50
51
5.279556
GGACTAGGACTGATAGGTAAATGCC
60.280
48.000
0.00
0.00
0.00
4.40
51
52
5.540719
AGGACTAGGACTGATAGGTAAATGC
59.459
44.000
0.00
0.00
0.00
3.56
52
53
8.707796
TTAGGACTAGGACTGATAGGTAAATG
57.292
38.462
0.00
0.00
0.00
2.32
53
54
7.951245
CCTTAGGACTAGGACTGATAGGTAAAT
59.049
40.741
0.00
0.00
0.00
1.40
54
55
7.296098
CCTTAGGACTAGGACTGATAGGTAAA
58.704
42.308
0.00
0.00
0.00
2.01
55
56
6.693565
GCCTTAGGACTAGGACTGATAGGTAA
60.694
46.154
0.69
0.00
0.00
2.85
56
57
5.222089
GCCTTAGGACTAGGACTGATAGGTA
60.222
48.000
0.69
0.00
0.00
3.08
57
58
4.448054
GCCTTAGGACTAGGACTGATAGGT
60.448
50.000
0.69
0.00
0.00
3.08
58
59
4.083565
GCCTTAGGACTAGGACTGATAGG
58.916
52.174
0.69
2.72
0.00
2.57
59
60
4.521256
GTGCCTTAGGACTAGGACTGATAG
59.479
50.000
0.69
0.00
0.00
2.08
60
61
4.079385
TGTGCCTTAGGACTAGGACTGATA
60.079
45.833
0.69
0.00
0.00
2.15
61
62
3.301274
GTGCCTTAGGACTAGGACTGAT
58.699
50.000
0.69
0.00
0.00
2.90
62
63
2.042569
TGTGCCTTAGGACTAGGACTGA
59.957
50.000
0.69
0.00
0.00
3.41
63
64
2.457598
TGTGCCTTAGGACTAGGACTG
58.542
52.381
0.69
0.00
0.00
3.51
64
65
2.921834
TGTGCCTTAGGACTAGGACT
57.078
50.000
0.69
0.00
0.00
3.85
65
66
4.039366
CCTATTGTGCCTTAGGACTAGGAC
59.961
50.000
0.69
0.00
37.74
3.85
66
67
4.078805
TCCTATTGTGCCTTAGGACTAGGA
60.079
45.833
0.69
8.24
39.22
2.94
67
68
4.223953
TCCTATTGTGCCTTAGGACTAGG
58.776
47.826
0.69
6.22
39.22
3.02
68
69
4.262249
GCTCCTATTGTGCCTTAGGACTAG
60.262
50.000
0.69
0.00
39.22
2.57
69
70
3.641906
GCTCCTATTGTGCCTTAGGACTA
59.358
47.826
0.69
0.00
39.22
2.59
70
71
2.436173
GCTCCTATTGTGCCTTAGGACT
59.564
50.000
0.69
0.00
39.22
3.85
71
72
2.170607
TGCTCCTATTGTGCCTTAGGAC
59.829
50.000
0.69
0.00
39.22
3.85
72
73
2.170607
GTGCTCCTATTGTGCCTTAGGA
59.829
50.000
0.69
0.00
41.30
2.94
73
74
2.171448
AGTGCTCCTATTGTGCCTTAGG
59.829
50.000
0.00
0.00
37.00
2.69
74
75
3.550437
AGTGCTCCTATTGTGCCTTAG
57.450
47.619
0.00
0.00
32.45
2.18
75
76
4.683400
GCTTAGTGCTCCTATTGTGCCTTA
60.683
45.833
0.00
0.00
38.95
2.69
76
77
3.878778
CTTAGTGCTCCTATTGTGCCTT
58.121
45.455
0.00
0.00
32.45
4.35
77
78
2.420687
GCTTAGTGCTCCTATTGTGCCT
60.421
50.000
0.00
0.00
38.95
4.75
78
79
1.943340
GCTTAGTGCTCCTATTGTGCC
59.057
52.381
0.00
0.00
38.95
5.01
79
80
1.943340
GGCTTAGTGCTCCTATTGTGC
59.057
52.381
0.00
0.00
42.39
4.57
80
81
2.092968
TGGGCTTAGTGCTCCTATTGTG
60.093
50.000
0.00
0.00
42.79
3.33
81
82
2.171448
CTGGGCTTAGTGCTCCTATTGT
59.829
50.000
0.00
0.00
42.79
2.71
82
83
2.486191
CCTGGGCTTAGTGCTCCTATTG
60.486
54.545
0.00
0.00
42.79
1.90
83
84
1.771255
CCTGGGCTTAGTGCTCCTATT
59.229
52.381
0.00
0.00
42.79
1.73
84
85
1.062121
TCCTGGGCTTAGTGCTCCTAT
60.062
52.381
0.00
0.00
42.79
2.57
85
86
0.338467
TCCTGGGCTTAGTGCTCCTA
59.662
55.000
0.00
0.00
42.79
2.94
86
87
0.547712
TTCCTGGGCTTAGTGCTCCT
60.548
55.000
0.00
0.00
42.79
3.69
87
88
0.393132
GTTCCTGGGCTTAGTGCTCC
60.393
60.000
0.00
0.00
42.79
4.70
88
89
0.393132
GGTTCCTGGGCTTAGTGCTC
60.393
60.000
0.00
0.00
44.01
4.26
89
90
1.133809
TGGTTCCTGGGCTTAGTGCT
61.134
55.000
0.00
0.00
42.39
4.40
90
91
0.678048
CTGGTTCCTGGGCTTAGTGC
60.678
60.000
0.00
0.00
41.94
4.40
91
92
0.693049
ACTGGTTCCTGGGCTTAGTG
59.307
55.000
0.00
0.00
0.00
2.74
92
93
1.446016
AACTGGTTCCTGGGCTTAGT
58.554
50.000
0.00
0.00
0.00
2.24
93
94
2.558359
CAAAACTGGTTCCTGGGCTTAG
59.442
50.000
0.00
0.00
0.00
2.18
94
95
2.593026
CAAAACTGGTTCCTGGGCTTA
58.407
47.619
0.00
0.00
0.00
3.09
95
96
1.413118
CAAAACTGGTTCCTGGGCTT
58.587
50.000
0.00
0.00
0.00
4.35
96
97
1.115326
GCAAAACTGGTTCCTGGGCT
61.115
55.000
0.00
0.00
0.00
5.19
97
98
1.367471
GCAAAACTGGTTCCTGGGC
59.633
57.895
0.00
0.00
0.00
5.36
98
99
1.118838
TTGCAAAACTGGTTCCTGGG
58.881
50.000
0.00
0.00
0.00
4.45
99
100
2.977772
TTTGCAAAACTGGTTCCTGG
57.022
45.000
10.02
0.00
0.00
4.45
115
116
4.774200
AGGAACTTTCTGGGAATGGATTTG
59.226
41.667
0.00
0.00
27.25
2.32
139
140
3.924114
AAAAGTTCCCAAAAACCAGGG
57.076
42.857
0.00
0.00
46.90
4.45
170
171
4.814771
ACAGACTAAAGAAAACCGGTTCAG
59.185
41.667
22.53
12.86
0.00
3.02
464
470
9.762933
ATCCAAATATTAAAATTCCCGAACATG
57.237
29.630
0.00
0.00
0.00
3.21
557
569
5.054390
TCTTTGAAGACGCAAACAGTTTT
57.946
34.783
0.00
0.00
34.35
2.43
621
634
9.810545
TTTGATAACAAGTTTCGAAAAAGGAAT
57.189
25.926
13.10
2.60
37.32
3.01
666
681
1.574702
GGGGCAGTGTAGCGAACAAC
61.575
60.000
0.00
0.00
40.63
3.32
681
697
2.232756
TTTCTTTTCTTTTGCGGGGC
57.767
45.000
0.00
0.00
0.00
5.80
703
719
2.053627
CATTTGGCGCTTGAAGTGTTC
58.946
47.619
7.64
1.44
0.00
3.18
927
975
3.710722
CGGCTGGAGCTTGGAGGT
61.711
66.667
0.00
0.00
41.70
3.85
943
1000
5.124645
AGAGGGACGTATATATAGAAGGCG
58.875
45.833
0.00
0.00
0.00
5.52
1318
1619
8.633561
GGAAGATATTTAAGGCAACAAGCTAAT
58.366
33.333
0.00
0.00
44.79
1.73
1564
4279
5.241728
GGATGGAGCAGTAAACAAAGTTTCT
59.758
40.000
0.00
0.00
0.00
2.52
1565
4280
5.461526
GGATGGAGCAGTAAACAAAGTTTC
58.538
41.667
0.00
0.00
0.00
2.78
1567
4282
3.502211
CGGATGGAGCAGTAAACAAAGTT
59.498
43.478
0.00
0.00
0.00
2.66
1568
4283
3.074412
CGGATGGAGCAGTAAACAAAGT
58.926
45.455
0.00
0.00
0.00
2.66
1569
4284
3.334691
TCGGATGGAGCAGTAAACAAAG
58.665
45.455
0.00
0.00
0.00
2.77
1571
4286
3.531538
GATCGGATGGAGCAGTAAACAA
58.468
45.455
0.00
0.00
0.00
2.83
1573
4288
2.158957
TGGATCGGATGGAGCAGTAAAC
60.159
50.000
0.00
0.00
30.89
2.01
1574
4289
2.115427
TGGATCGGATGGAGCAGTAAA
58.885
47.619
0.00
0.00
30.89
2.01
1575
4290
1.788229
TGGATCGGATGGAGCAGTAA
58.212
50.000
0.00
0.00
30.89
2.24
1577
4292
0.911769
TTTGGATCGGATGGAGCAGT
59.088
50.000
0.00
0.00
30.89
4.40
1578
4293
1.672881
GTTTTGGATCGGATGGAGCAG
59.327
52.381
0.00
0.00
30.89
4.24
1580
4295
1.750193
TGTTTTGGATCGGATGGAGC
58.250
50.000
0.00
0.00
0.00
4.70
1581
4296
2.033801
GCATGTTTTGGATCGGATGGAG
59.966
50.000
0.00
0.00
0.00
3.86
1583
4298
1.268692
CGCATGTTTTGGATCGGATGG
60.269
52.381
0.00
0.00
0.00
3.51
1584
4299
1.401552
ACGCATGTTTTGGATCGGATG
59.598
47.619
0.00
0.00
0.00
3.51
1586
4301
1.083489
GACGCATGTTTTGGATCGGA
58.917
50.000
0.00
0.00
0.00
4.55
1587
4302
0.098728
GGACGCATGTTTTGGATCGG
59.901
55.000
0.00
0.00
0.00
4.18
1588
4303
0.098728
GGGACGCATGTTTTGGATCG
59.901
55.000
0.00
0.00
0.00
3.69
1589
4304
1.173043
TGGGACGCATGTTTTGGATC
58.827
50.000
0.00
0.00
0.00
3.36
1590
4305
1.272212
GTTGGGACGCATGTTTTGGAT
59.728
47.619
0.00
0.00
0.00
3.41
1591
4306
0.671251
GTTGGGACGCATGTTTTGGA
59.329
50.000
0.00
0.00
0.00
3.53
1592
4307
0.673437
AGTTGGGACGCATGTTTTGG
59.327
50.000
0.00
0.00
0.00
3.28
1593
4308
2.507339
AAGTTGGGACGCATGTTTTG
57.493
45.000
0.00
0.00
0.00
2.44
1594
4309
3.634910
ACTAAAGTTGGGACGCATGTTTT
59.365
39.130
0.00
0.00
0.00
2.43
1595
4310
3.219281
ACTAAAGTTGGGACGCATGTTT
58.781
40.909
0.00
0.00
0.00
2.83
1598
4313
3.331150
TGTACTAAAGTTGGGACGCATG
58.669
45.455
0.00
0.00
0.00
4.06
1599
4314
3.688694
TGTACTAAAGTTGGGACGCAT
57.311
42.857
0.00
0.00
0.00
4.73
1601
4316
3.396560
AGTTGTACTAAAGTTGGGACGC
58.603
45.455
0.00
0.00
0.00
5.19
1602
4317
5.295045
ACAAAGTTGTACTAAAGTTGGGACG
59.705
40.000
0.00
0.00
40.16
4.79
1641
4364
9.604626
CAGTCTCAAAATAAGTGTCTCAATTTC
57.395
33.333
0.00
0.00
0.00
2.17
1752
5973
3.705604
CGCAAGGGCCACTAATTAATTG
58.294
45.455
11.05
0.00
36.38
2.32
1901
6131
5.357878
TGTGTTTTGAGAGAGCATGTTTCTT
59.642
36.000
0.00
0.00
0.00
2.52
2130
6360
2.547218
CGTTCTTTTGAGGAGGAACCGA
60.547
50.000
0.00
0.00
44.74
4.69
2164
6394
1.276989
TCCAACCGTCGGCTTTCTTAT
59.723
47.619
12.28
0.00
0.00
1.73
2321
6685
9.750125
CCTTTATTGCTTACTTCTTCTTTTTGT
57.250
29.630
0.00
0.00
0.00
2.83
2322
6686
8.703336
GCCTTTATTGCTTACTTCTTCTTTTTG
58.297
33.333
0.00
0.00
0.00
2.44
2323
6687
7.872993
GGCCTTTATTGCTTACTTCTTCTTTTT
59.127
33.333
0.00
0.00
0.00
1.94
2324
6688
7.015195
TGGCCTTTATTGCTTACTTCTTCTTTT
59.985
33.333
3.32
0.00
0.00
2.27
2325
6689
6.493458
TGGCCTTTATTGCTTACTTCTTCTTT
59.507
34.615
3.32
0.00
0.00
2.52
2326
6690
6.010219
TGGCCTTTATTGCTTACTTCTTCTT
58.990
36.000
3.32
0.00
0.00
2.52
2394
6758
9.674068
AAAAGATAGTCCACTAAATTCTCCTTC
57.326
33.333
0.00
0.00
31.39
3.46
2453
6817
6.507023
CAAATAGGGAAATAAGACCACATGC
58.493
40.000
0.00
0.00
0.00
4.06
2865
8685
5.584649
CCAATTATCGTAGAAACCTTCAGCA
59.415
40.000
0.00
0.00
43.58
4.41
2951
8779
0.179045
GGACACCGGGGATTGATCTG
60.179
60.000
12.96
0.00
0.00
2.90
2967
8797
1.687494
CGCTTGCGAACTAGCTGGAC
61.687
60.000
9.60
0.00
41.76
4.02
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.