Multiple sequence alignment - TraesCS3D01G083100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G083100 chr3D 100.000 3030 0 0 1 3030 42310357 42313386 0.000000e+00 5596.0
1 TraesCS3D01G083100 chr3D 91.096 438 37 2 1 436 17775566 17776003 2.600000e-165 592.0
2 TraesCS3D01G083100 chr3D 90.583 446 38 4 1 442 30002811 30002366 3.370000e-164 588.0
3 TraesCS3D01G083100 chr3A 92.192 2062 83 32 455 2458 53555628 53553587 0.000000e+00 2844.0
4 TraesCS3D01G083100 chr3A 95.902 122 5 0 2909 3030 53553592 53553471 6.630000e-47 198.0
5 TraesCS3D01G083100 chr3B 93.501 1031 35 10 454 1472 65548950 65547940 0.000000e+00 1504.0
6 TraesCS3D01G083100 chr3B 91.283 826 39 16 1541 2343 65547847 65547032 0.000000e+00 1096.0
7 TraesCS3D01G083100 chr3B 99.174 121 1 0 2338 2458 65542002 65541882 5.090000e-53 219.0
8 TraesCS3D01G083100 chr3B 98.305 118 2 0 2912 3029 65541884 65541767 1.100000e-49 207.0
9 TraesCS3D01G083100 chr3B 89.720 107 9 2 2510 2615 47205515 47205620 5.270000e-28 135.0
10 TraesCS3D01G083100 chr7D 92.906 437 29 2 1 436 246548540 246548105 4.260000e-178 634.0
11 TraesCS3D01G083100 chr2B 91.781 438 34 2 1 436 479592433 479592870 2.580000e-170 608.0
12 TraesCS3D01G083100 chr2B 85.926 135 15 4 2592 2725 161110710 161110841 1.130000e-29 141.0
13 TraesCS3D01G083100 chr2B 87.179 117 12 3 2592 2707 161113539 161113653 2.450000e-26 130.0
14 TraesCS3D01G083100 chr4A 91.800 439 30 5 1 436 190828733 190828298 9.290000e-170 606.0
15 TraesCS3D01G083100 chr4A 89.593 221 18 3 2696 2911 616257802 616258022 2.980000e-70 276.0
16 TraesCS3D01G083100 chr4A 79.412 170 26 6 2247 2407 607264908 607264739 8.880000e-21 111.0
17 TraesCS3D01G083100 chr5D 91.304 437 36 2 2 436 8499578 8499142 2.010000e-166 595.0
18 TraesCS3D01G083100 chr5D 79.851 134 22 3 2272 2401 356839639 356839771 3.220000e-15 93.5
19 TraesCS3D01G083100 chr4B 91.116 439 35 4 1 436 510355110 510355547 2.600000e-165 592.0
20 TraesCS3D01G083100 chr1D 90.888 439 35 4 1 436 28552151 28552587 4.350000e-163 584.0
21 TraesCS3D01G083100 chr1D 90.868 438 35 5 1 436 459828662 459829096 1.570000e-162 582.0
22 TraesCS3D01G083100 chr1B 96.800 250 6 2 2459 2707 21355102 21355350 1.680000e-112 416.0
23 TraesCS3D01G083100 chr1B 95.600 250 9 2 2459 2707 21357609 21357857 1.690000e-107 399.0
24 TraesCS3D01G083100 chr1B 83.036 112 17 2 2461 2571 59632479 59632369 1.920000e-17 100.0
25 TraesCS3D01G083100 chr6B 86.056 251 26 3 2667 2909 698073991 698074240 8.330000e-66 261.0
26 TraesCS3D01G083100 chr6D 78.235 170 29 6 2245 2407 471072195 471072363 5.340000e-18 102.0
27 TraesCS3D01G083100 chr7B 86.301 73 7 3 2248 2318 327458999 327458928 3.240000e-10 76.8
28 TraesCS3D01G083100 chr2A 80.220 91 14 4 2269 2356 3450928 3451017 7.010000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G083100 chr3D 42310357 42313386 3029 False 5596.0 5596 100.000 1 3030 1 chr3D.!!$F2 3029
1 TraesCS3D01G083100 chr3A 53553471 53555628 2157 True 1521.0 2844 94.047 455 3030 2 chr3A.!!$R1 2575
2 TraesCS3D01G083100 chr3B 65547032 65548950 1918 True 1300.0 1504 92.392 454 2343 2 chr3B.!!$R2 1889
3 TraesCS3D01G083100 chr1B 21355102 21357857 2755 False 407.5 416 96.200 2459 2707 2 chr1B.!!$F1 248

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
363 364 0.031857 TTTTGGGCGTGATTGTGCTG 59.968 50.0 0.00 0.0 0.0 4.41 F
389 390 0.035439 CCCCAGCTGTTATCGTTGGT 60.035 55.0 13.81 0.0 0.0 3.67 F
1472 1502 0.107456 CTGCCGCTCAGGTATCCATT 59.893 55.0 0.00 0.0 43.7 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1772 1857 1.942657 CTGGCCTGCATATACACACAC 59.057 52.381 3.32 0.00 0.00 3.82 R
1780 1865 2.039480 CTGGATGTACTGGCCTGCATAT 59.961 50.000 9.95 0.02 0.00 1.78 R
2477 2578 0.109964 GCAGCGTGCATTTAACCGAA 60.110 50.000 0.00 0.00 44.26 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.423154 GTTTGGTGGCGAGCTCCG 61.423 66.667 8.47 4.62 42.21 4.63
18 19 3.621805 TTTGGTGGCGAGCTCCGA 61.622 61.111 8.47 0.00 41.76 4.55
19 20 3.171828 TTTGGTGGCGAGCTCCGAA 62.172 57.895 8.47 0.00 41.76 4.30
20 21 3.589654 TTGGTGGCGAGCTCCGAAG 62.590 63.158 8.47 0.00 41.76 3.79
21 22 4.070552 GGTGGCGAGCTCCGAAGT 62.071 66.667 8.47 0.00 41.76 3.01
22 23 2.811317 GTGGCGAGCTCCGAAGTG 60.811 66.667 8.47 0.00 41.76 3.16
23 24 4.742201 TGGCGAGCTCCGAAGTGC 62.742 66.667 8.47 4.18 41.76 4.40
25 26 4.443266 GCGAGCTCCGAAGTGCCT 62.443 66.667 8.47 0.00 41.76 4.75
26 27 2.507992 CGAGCTCCGAAGTGCCTG 60.508 66.667 8.47 0.00 41.76 4.85
27 28 2.973899 GAGCTCCGAAGTGCCTGA 59.026 61.111 0.87 0.00 32.81 3.86
28 29 1.153667 GAGCTCCGAAGTGCCTGAG 60.154 63.158 0.87 0.00 32.81 3.35
29 30 2.125350 GCTCCGAAGTGCCTGAGG 60.125 66.667 0.00 0.00 0.00 3.86
30 31 2.948720 GCTCCGAAGTGCCTGAGGT 61.949 63.158 0.00 0.00 0.00 3.85
31 32 1.605058 GCTCCGAAGTGCCTGAGGTA 61.605 60.000 0.00 0.00 0.00 3.08
32 33 0.457851 CTCCGAAGTGCCTGAGGTAG 59.542 60.000 0.00 0.00 0.00 3.18
33 34 0.039180 TCCGAAGTGCCTGAGGTAGA 59.961 55.000 0.00 0.00 0.00 2.59
34 35 0.457851 CCGAAGTGCCTGAGGTAGAG 59.542 60.000 0.00 0.00 0.00 2.43
35 36 0.457851 CGAAGTGCCTGAGGTAGAGG 59.542 60.000 0.00 0.00 0.00 3.69
42 43 2.990740 CCTGAGGTAGAGGCTAGGAT 57.009 55.000 0.00 0.00 0.00 3.24
43 44 2.802719 CCTGAGGTAGAGGCTAGGATC 58.197 57.143 0.00 0.00 0.00 3.36
44 45 2.432444 CTGAGGTAGAGGCTAGGATCG 58.568 57.143 0.00 0.00 0.00 3.69
45 46 1.074084 TGAGGTAGAGGCTAGGATCGG 59.926 57.143 0.00 0.00 0.00 4.18
46 47 1.351683 GAGGTAGAGGCTAGGATCGGA 59.648 57.143 0.00 0.00 0.00 4.55
47 48 1.781529 AGGTAGAGGCTAGGATCGGAA 59.218 52.381 0.00 0.00 0.00 4.30
48 49 2.164338 GGTAGAGGCTAGGATCGGAAG 58.836 57.143 0.00 0.00 0.00 3.46
55 56 2.289756 GGCTAGGATCGGAAGAAATCCC 60.290 54.545 0.00 0.00 46.39 3.85
56 57 2.635427 GCTAGGATCGGAAGAAATCCCT 59.365 50.000 0.00 0.00 46.39 4.20
57 58 3.556004 GCTAGGATCGGAAGAAATCCCTG 60.556 52.174 0.00 0.00 46.39 4.45
58 59 2.482494 AGGATCGGAAGAAATCCCTGT 58.518 47.619 0.00 0.00 46.39 4.00
59 60 2.846827 AGGATCGGAAGAAATCCCTGTT 59.153 45.455 0.00 0.00 46.39 3.16
60 61 2.945668 GGATCGGAAGAAATCCCTGTTG 59.054 50.000 0.00 0.00 46.39 3.33
61 62 2.489938 TCGGAAGAAATCCCTGTTGG 57.510 50.000 0.00 0.00 46.39 3.77
62 63 0.811281 CGGAAGAAATCCCTGTTGGC 59.189 55.000 0.00 0.00 46.39 4.52
63 64 1.614317 CGGAAGAAATCCCTGTTGGCT 60.614 52.381 0.00 0.00 46.39 4.75
64 65 2.529632 GGAAGAAATCCCTGTTGGCTT 58.470 47.619 0.00 0.00 43.00 4.35
65 66 2.232208 GGAAGAAATCCCTGTTGGCTTG 59.768 50.000 0.00 0.00 43.00 4.01
66 67 1.928868 AGAAATCCCTGTTGGCTTGG 58.071 50.000 0.00 0.00 0.00 3.61
67 68 0.247460 GAAATCCCTGTTGGCTTGGC 59.753 55.000 0.00 0.00 0.00 4.52
77 78 4.778143 GGCTTGGCCGACACCGAT 62.778 66.667 0.00 0.00 39.62 4.18
78 79 3.499737 GCTTGGCCGACACCGATG 61.500 66.667 0.00 0.00 38.22 3.84
79 80 3.499737 CTTGGCCGACACCGATGC 61.500 66.667 0.00 0.00 38.22 3.91
92 93 3.490759 GATGCGGTGGCGTGTGAG 61.491 66.667 0.00 0.00 44.10 3.51
97 98 3.936203 GGTGGCGTGTGAGGGTGA 61.936 66.667 0.00 0.00 0.00 4.02
98 99 2.665185 GTGGCGTGTGAGGGTGAC 60.665 66.667 0.00 0.00 0.00 3.67
99 100 4.293648 TGGCGTGTGAGGGTGACG 62.294 66.667 0.00 0.00 36.18 4.35
105 106 4.736896 GTGAGGGTGACGCCGGAC 62.737 72.222 5.05 0.00 38.44 4.79
109 110 4.754667 GGGTGACGCCGGACCTTC 62.755 72.222 5.05 0.00 38.44 3.46
110 111 4.754667 GGTGACGCCGGACCTTCC 62.755 72.222 5.05 0.00 0.00 3.46
111 112 3.692406 GTGACGCCGGACCTTCCT 61.692 66.667 5.05 0.00 33.30 3.36
112 113 3.691342 TGACGCCGGACCTTCCTG 61.691 66.667 5.05 0.00 33.30 3.86
113 114 3.379445 GACGCCGGACCTTCCTGA 61.379 66.667 5.05 0.00 33.30 3.86
114 115 2.920912 ACGCCGGACCTTCCTGAA 60.921 61.111 5.05 0.00 33.30 3.02
115 116 2.125512 CGCCGGACCTTCCTGAAG 60.126 66.667 5.05 0.00 38.14 3.02
123 124 2.125512 CTTCCTGAAGGGCGTCGG 60.126 66.667 0.00 0.00 34.87 4.79
124 125 3.665675 CTTCCTGAAGGGCGTCGGG 62.666 68.421 8.09 8.09 44.41 5.14
129 130 4.525949 GAAGGGCGTCGGGGCTAC 62.526 72.222 0.00 0.00 41.87 3.58
133 134 4.091939 GGCGTCGGGGCTACCTTT 62.092 66.667 0.00 0.00 38.40 3.11
134 135 2.510918 GCGTCGGGGCTACCTTTC 60.511 66.667 0.00 0.00 36.97 2.62
135 136 2.186125 CGTCGGGGCTACCTTTCC 59.814 66.667 0.00 0.00 36.97 3.13
136 137 2.356780 CGTCGGGGCTACCTTTCCT 61.357 63.158 0.00 0.00 36.97 3.36
137 138 1.521141 GTCGGGGCTACCTTTCCTC 59.479 63.158 0.00 0.00 36.97 3.71
138 139 0.976590 GTCGGGGCTACCTTTCCTCT 60.977 60.000 0.00 0.00 36.97 3.69
139 140 0.686769 TCGGGGCTACCTTTCCTCTC 60.687 60.000 0.00 0.00 36.97 3.20
140 141 0.688087 CGGGGCTACCTTTCCTCTCT 60.688 60.000 0.00 0.00 36.97 3.10
141 142 1.124780 GGGGCTACCTTTCCTCTCTC 58.875 60.000 0.00 0.00 36.80 3.20
142 143 1.124780 GGGCTACCTTTCCTCTCTCC 58.875 60.000 0.00 0.00 0.00 3.71
143 144 1.343580 GGGCTACCTTTCCTCTCTCCT 60.344 57.143 0.00 0.00 0.00 3.69
144 145 2.036387 GGCTACCTTTCCTCTCTCCTC 58.964 57.143 0.00 0.00 0.00 3.71
145 146 1.679153 GCTACCTTTCCTCTCTCCTCG 59.321 57.143 0.00 0.00 0.00 4.63
146 147 1.679153 CTACCTTTCCTCTCTCCTCGC 59.321 57.143 0.00 0.00 0.00 5.03
147 148 0.973496 ACCTTTCCTCTCTCCTCGCC 60.973 60.000 0.00 0.00 0.00 5.54
148 149 1.435515 CTTTCCTCTCTCCTCGCCG 59.564 63.158 0.00 0.00 0.00 6.46
149 150 1.304217 TTTCCTCTCTCCTCGCCGT 60.304 57.895 0.00 0.00 0.00 5.68
150 151 1.595993 TTTCCTCTCTCCTCGCCGTG 61.596 60.000 0.00 0.00 0.00 4.94
151 152 2.752238 CCTCTCTCCTCGCCGTGT 60.752 66.667 0.00 0.00 0.00 4.49
152 153 1.451567 CCTCTCTCCTCGCCGTGTA 60.452 63.158 0.00 0.00 0.00 2.90
153 154 0.820074 CCTCTCTCCTCGCCGTGTAT 60.820 60.000 0.00 0.00 0.00 2.29
154 155 0.589223 CTCTCTCCTCGCCGTGTATC 59.411 60.000 0.00 0.00 0.00 2.24
155 156 1.158484 TCTCTCCTCGCCGTGTATCG 61.158 60.000 0.00 0.00 39.52 2.92
175 176 3.369921 GGAAACCCTTGGCAGCAG 58.630 61.111 0.00 0.00 0.00 4.24
176 177 1.531602 GGAAACCCTTGGCAGCAGT 60.532 57.895 0.00 0.00 0.00 4.40
177 178 0.251165 GGAAACCCTTGGCAGCAGTA 60.251 55.000 0.00 0.00 0.00 2.74
178 179 1.616994 GGAAACCCTTGGCAGCAGTAT 60.617 52.381 0.00 0.00 0.00 2.12
179 180 1.745653 GAAACCCTTGGCAGCAGTATC 59.254 52.381 0.00 0.00 0.00 2.24
180 181 0.392998 AACCCTTGGCAGCAGTATCG 60.393 55.000 0.00 0.00 0.00 2.92
181 182 1.221840 CCCTTGGCAGCAGTATCGT 59.778 57.895 0.00 0.00 0.00 3.73
182 183 0.811616 CCCTTGGCAGCAGTATCGTC 60.812 60.000 0.00 0.00 0.00 4.20
183 184 0.108186 CCTTGGCAGCAGTATCGTCA 60.108 55.000 0.00 0.00 0.00 4.35
184 185 1.473965 CCTTGGCAGCAGTATCGTCAT 60.474 52.381 0.00 0.00 0.00 3.06
185 186 1.863454 CTTGGCAGCAGTATCGTCATC 59.137 52.381 0.00 0.00 0.00 2.92
186 187 0.249031 TGGCAGCAGTATCGTCATCG 60.249 55.000 0.00 0.00 38.55 3.84
187 188 0.249073 GGCAGCAGTATCGTCATCGT 60.249 55.000 0.00 0.00 38.33 3.73
188 189 1.124462 GCAGCAGTATCGTCATCGTC 58.876 55.000 0.00 0.00 38.33 4.20
189 190 1.389853 CAGCAGTATCGTCATCGTCG 58.610 55.000 0.00 0.00 38.33 5.12
190 191 0.317103 AGCAGTATCGTCATCGTCGC 60.317 55.000 0.00 0.00 38.33 5.19
191 192 1.589154 GCAGTATCGTCATCGTCGCG 61.589 60.000 0.00 0.00 38.33 5.87
192 193 0.315951 CAGTATCGTCATCGTCGCGT 60.316 55.000 5.77 0.00 38.33 6.01
193 194 0.376152 AGTATCGTCATCGTCGCGTT 59.624 50.000 5.77 0.00 38.33 4.84
194 195 0.763077 GTATCGTCATCGTCGCGTTC 59.237 55.000 5.77 0.00 38.33 3.95
195 196 0.316442 TATCGTCATCGTCGCGTTCC 60.316 55.000 5.77 0.00 38.33 3.62
196 197 1.989966 ATCGTCATCGTCGCGTTCCT 61.990 55.000 5.77 0.00 38.33 3.36
197 198 1.800315 CGTCATCGTCGCGTTCCTT 60.800 57.895 5.77 0.00 0.00 3.36
198 199 1.730593 CGTCATCGTCGCGTTCCTTC 61.731 60.000 5.77 0.00 0.00 3.46
199 200 0.456312 GTCATCGTCGCGTTCCTTCT 60.456 55.000 5.77 0.00 0.00 2.85
200 201 0.242825 TCATCGTCGCGTTCCTTCTT 59.757 50.000 5.77 0.00 0.00 2.52
201 202 0.366871 CATCGTCGCGTTCCTTCTTG 59.633 55.000 5.77 0.00 0.00 3.02
202 203 0.736325 ATCGTCGCGTTCCTTCTTGG 60.736 55.000 5.77 0.00 37.10 3.61
203 204 1.372499 CGTCGCGTTCCTTCTTGGA 60.372 57.895 5.77 0.00 44.51 3.53
215 216 5.060427 TCCTTCTTGGAGGTTTTGATTGA 57.940 39.130 0.00 0.00 40.56 2.57
216 217 5.644188 TCCTTCTTGGAGGTTTTGATTGAT 58.356 37.500 0.00 0.00 40.56 2.57
217 218 6.789268 TCCTTCTTGGAGGTTTTGATTGATA 58.211 36.000 0.00 0.00 40.56 2.15
218 219 6.659242 TCCTTCTTGGAGGTTTTGATTGATAC 59.341 38.462 0.00 0.00 40.56 2.24
219 220 6.127619 CCTTCTTGGAGGTTTTGATTGATACC 60.128 42.308 0.00 0.00 38.35 2.73
220 221 4.941263 TCTTGGAGGTTTTGATTGATACCG 59.059 41.667 0.00 0.00 35.80 4.02
221 222 3.616219 TGGAGGTTTTGATTGATACCGG 58.384 45.455 0.00 0.00 35.80 5.28
222 223 2.357952 GGAGGTTTTGATTGATACCGGC 59.642 50.000 0.00 0.00 35.80 6.13
223 224 2.014128 AGGTTTTGATTGATACCGGCG 58.986 47.619 0.00 0.00 35.80 6.46
224 225 1.533129 GGTTTTGATTGATACCGGCGC 60.533 52.381 0.00 0.00 0.00 6.53
225 226 1.400494 GTTTTGATTGATACCGGCGCT 59.600 47.619 7.64 0.00 0.00 5.92
226 227 1.745232 TTTGATTGATACCGGCGCTT 58.255 45.000 7.64 0.00 0.00 4.68
227 228 1.295792 TTGATTGATACCGGCGCTTC 58.704 50.000 7.64 0.00 0.00 3.86
228 229 0.874175 TGATTGATACCGGCGCTTCG 60.874 55.000 7.64 2.53 0.00 3.79
237 238 4.856607 GGCGCTTCGGAGTCTCGG 62.857 72.222 7.64 1.00 0.00 4.63
238 239 3.812019 GCGCTTCGGAGTCTCGGA 61.812 66.667 0.00 6.03 0.00 4.55
239 240 2.405594 CGCTTCGGAGTCTCGGAG 59.594 66.667 9.76 0.00 38.70 4.63
241 242 3.912614 CTTCGGAGTCTCGGAGCT 58.087 61.111 9.76 0.75 0.00 4.09
242 243 2.185238 CTTCGGAGTCTCGGAGCTT 58.815 57.895 9.76 0.00 0.00 3.74
243 244 0.179150 CTTCGGAGTCTCGGAGCTTG 60.179 60.000 9.76 0.00 0.00 4.01
244 245 1.595993 TTCGGAGTCTCGGAGCTTGG 61.596 60.000 9.76 0.00 0.00 3.61
245 246 2.344203 CGGAGTCTCGGAGCTTGGT 61.344 63.158 0.00 0.00 0.00 3.67
246 247 1.216710 GGAGTCTCGGAGCTTGGTG 59.783 63.158 0.00 0.00 0.00 4.17
247 248 1.446966 GAGTCTCGGAGCTTGGTGC 60.447 63.158 0.00 0.00 43.29 5.01
256 257 3.567797 GCTTGGTGCGCGATCTCC 61.568 66.667 12.10 3.77 0.00 3.71
257 258 3.257561 CTTGGTGCGCGATCTCCG 61.258 66.667 12.10 0.00 42.21 4.63
258 259 4.812476 TTGGTGCGCGATCTCCGG 62.812 66.667 12.10 0.00 39.04 5.14
264 265 4.907034 CGCGATCTCCGGTGGACG 62.907 72.222 0.00 9.90 43.80 4.79
265 266 3.823330 GCGATCTCCGGTGGACGT 61.823 66.667 18.36 0.00 42.24 4.34
266 267 2.475466 GCGATCTCCGGTGGACGTA 61.475 63.158 18.36 0.00 42.24 3.57
267 268 1.647629 CGATCTCCGGTGGACGTAG 59.352 63.158 0.00 0.00 42.24 3.51
268 269 1.359475 GATCTCCGGTGGACGTAGC 59.641 63.158 0.00 0.00 42.24 3.58
269 270 2.389866 GATCTCCGGTGGACGTAGCG 62.390 65.000 0.00 3.02 42.24 4.26
273 274 3.740397 CGGTGGACGTAGCGGTCA 61.740 66.667 2.07 0.00 38.70 4.02
274 275 2.126189 GGTGGACGTAGCGGTCAC 60.126 66.667 0.00 0.00 38.70 3.67
275 276 2.503375 GTGGACGTAGCGGTCACG 60.503 66.667 12.71 12.71 44.80 4.35
276 277 2.669229 TGGACGTAGCGGTCACGA 60.669 61.111 18.59 0.08 44.60 4.35
277 278 2.099831 GGACGTAGCGGTCACGAG 59.900 66.667 18.59 0.00 44.60 4.18
278 279 2.393768 GGACGTAGCGGTCACGAGA 61.394 63.158 18.59 0.00 44.60 4.04
279 280 1.225963 GACGTAGCGGTCACGAGAC 60.226 63.158 18.59 4.21 44.60 3.36
280 281 1.633852 GACGTAGCGGTCACGAGACT 61.634 60.000 18.59 0.00 44.36 3.24
281 282 1.233285 ACGTAGCGGTCACGAGACTT 61.233 55.000 18.59 2.33 44.36 3.01
282 283 0.520827 CGTAGCGGTCACGAGACTTC 60.521 60.000 12.77 5.15 44.36 3.01
283 284 0.520404 GTAGCGGTCACGAGACTTCA 59.480 55.000 12.77 0.00 44.36 3.02
284 285 1.132643 GTAGCGGTCACGAGACTTCAT 59.867 52.381 12.77 0.30 44.36 2.57
285 286 0.171455 AGCGGTCACGAGACTTCATC 59.829 55.000 12.77 0.00 44.36 2.92
286 287 1.134530 GCGGTCACGAGACTTCATCG 61.135 60.000 12.77 8.34 44.36 3.84
295 296 3.711425 CGAGACTTCATCGTTTTTGTCG 58.289 45.455 0.00 0.00 35.48 4.35
296 297 3.424198 CGAGACTTCATCGTTTTTGTCGA 59.576 43.478 0.00 0.00 41.45 4.20
297 298 4.090066 CGAGACTTCATCGTTTTTGTCGAT 59.910 41.667 0.00 0.00 46.70 3.59
298 299 5.517037 AGACTTCATCGTTTTTGTCGATC 57.483 39.130 0.00 0.00 44.49 3.69
299 300 4.389077 AGACTTCATCGTTTTTGTCGATCC 59.611 41.667 0.00 0.00 44.49 3.36
300 301 3.122948 ACTTCATCGTTTTTGTCGATCCG 59.877 43.478 0.00 0.00 44.49 4.18
301 302 1.392168 TCATCGTTTTTGTCGATCCGC 59.608 47.619 0.00 0.00 44.49 5.54
302 303 1.393539 CATCGTTTTTGTCGATCCGCT 59.606 47.619 0.00 0.00 44.49 5.52
303 304 0.787787 TCGTTTTTGTCGATCCGCTG 59.212 50.000 0.00 0.00 32.30 5.18
304 305 0.511221 CGTTTTTGTCGATCCGCTGT 59.489 50.000 0.00 0.00 0.00 4.40
305 306 1.070175 CGTTTTTGTCGATCCGCTGTT 60.070 47.619 0.00 0.00 0.00 3.16
306 307 2.156117 CGTTTTTGTCGATCCGCTGTTA 59.844 45.455 0.00 0.00 0.00 2.41
307 308 3.181524 CGTTTTTGTCGATCCGCTGTTAT 60.182 43.478 0.00 0.00 0.00 1.89
308 309 4.331962 GTTTTTGTCGATCCGCTGTTATC 58.668 43.478 0.00 0.00 0.00 1.75
309 310 1.835121 TTGTCGATCCGCTGTTATCG 58.165 50.000 0.00 0.00 44.88 2.92
311 312 1.007734 TCGATCCGCTGTTATCGGC 60.008 57.895 5.04 0.00 46.05 5.54
312 313 1.299850 CGATCCGCTGTTATCGGCA 60.300 57.895 5.49 0.00 46.05 5.69
313 314 0.667487 CGATCCGCTGTTATCGGCAT 60.667 55.000 5.49 0.00 46.05 4.40
314 315 1.512926 GATCCGCTGTTATCGGCATT 58.487 50.000 5.49 0.00 46.05 3.56
315 316 1.873591 GATCCGCTGTTATCGGCATTT 59.126 47.619 5.49 0.00 46.05 2.32
316 317 1.013596 TCCGCTGTTATCGGCATTTG 58.986 50.000 5.49 0.00 46.05 2.32
317 318 0.732571 CCGCTGTTATCGGCATTTGT 59.267 50.000 5.49 0.00 45.42 2.83
318 319 1.132262 CCGCTGTTATCGGCATTTGTT 59.868 47.619 5.49 0.00 45.42 2.83
319 320 2.415357 CCGCTGTTATCGGCATTTGTTT 60.415 45.455 5.49 0.00 45.42 2.83
320 321 2.845967 CGCTGTTATCGGCATTTGTTTC 59.154 45.455 5.49 0.00 45.42 2.78
321 322 3.426159 CGCTGTTATCGGCATTTGTTTCT 60.426 43.478 5.49 0.00 45.42 2.52
322 323 4.485163 GCTGTTATCGGCATTTGTTTCTT 58.515 39.130 0.00 0.00 44.61 2.52
323 324 4.923281 GCTGTTATCGGCATTTGTTTCTTT 59.077 37.500 0.00 0.00 44.61 2.52
324 325 5.405269 GCTGTTATCGGCATTTGTTTCTTTT 59.595 36.000 0.00 0.00 44.61 2.27
325 326 6.399986 GCTGTTATCGGCATTTGTTTCTTTTC 60.400 38.462 0.00 0.00 44.61 2.29
326 327 6.744112 TGTTATCGGCATTTGTTTCTTTTCT 58.256 32.000 0.00 0.00 0.00 2.52
327 328 7.206687 TGTTATCGGCATTTGTTTCTTTTCTT 58.793 30.769 0.00 0.00 0.00 2.52
328 329 7.708752 TGTTATCGGCATTTGTTTCTTTTCTTT 59.291 29.630 0.00 0.00 0.00 2.52
329 330 8.547894 GTTATCGGCATTTGTTTCTTTTCTTTT 58.452 29.630 0.00 0.00 0.00 2.27
330 331 6.976636 TCGGCATTTGTTTCTTTTCTTTTT 57.023 29.167 0.00 0.00 0.00 1.94
352 353 7.707774 TTTTCTCTTTCTTTTATTTTGGGCG 57.292 32.000 0.00 0.00 0.00 6.13
353 354 6.399639 TTCTCTTTCTTTTATTTTGGGCGT 57.600 33.333 0.00 0.00 0.00 5.68
354 355 5.768317 TCTCTTTCTTTTATTTTGGGCGTG 58.232 37.500 0.00 0.00 0.00 5.34
355 356 5.533154 TCTCTTTCTTTTATTTTGGGCGTGA 59.467 36.000 0.00 0.00 0.00 4.35
356 357 6.208599 TCTCTTTCTTTTATTTTGGGCGTGAT 59.791 34.615 0.00 0.00 0.00 3.06
357 358 6.754193 TCTTTCTTTTATTTTGGGCGTGATT 58.246 32.000 0.00 0.00 0.00 2.57
358 359 6.644592 TCTTTCTTTTATTTTGGGCGTGATTG 59.355 34.615 0.00 0.00 0.00 2.67
359 360 5.461032 TCTTTTATTTTGGGCGTGATTGT 57.539 34.783 0.00 0.00 0.00 2.71
360 361 5.226396 TCTTTTATTTTGGGCGTGATTGTG 58.774 37.500 0.00 0.00 0.00 3.33
361 362 2.645730 TATTTTGGGCGTGATTGTGC 57.354 45.000 0.00 0.00 0.00 4.57
362 363 0.968405 ATTTTGGGCGTGATTGTGCT 59.032 45.000 0.00 0.00 0.00 4.40
363 364 0.031857 TTTTGGGCGTGATTGTGCTG 59.968 50.000 0.00 0.00 0.00 4.41
364 365 2.419057 TTTGGGCGTGATTGTGCTGC 62.419 55.000 0.00 0.00 0.00 5.25
365 366 3.058160 GGGCGTGATTGTGCTGCT 61.058 61.111 0.00 0.00 0.00 4.24
366 367 2.629656 GGGCGTGATTGTGCTGCTT 61.630 57.895 0.00 0.00 0.00 3.91
367 368 1.154150 GGCGTGATTGTGCTGCTTC 60.154 57.895 0.00 0.00 0.00 3.86
368 369 1.154150 GCGTGATTGTGCTGCTTCC 60.154 57.895 0.00 0.00 0.00 3.46
369 370 1.133253 CGTGATTGTGCTGCTTCCG 59.867 57.895 0.00 0.00 0.00 4.30
370 371 1.154150 GTGATTGTGCTGCTTCCGC 60.154 57.895 0.00 0.00 0.00 5.54
371 372 2.334946 TGATTGTGCTGCTTCCGCC 61.335 57.895 0.00 0.00 34.43 6.13
372 373 3.056313 GATTGTGCTGCTTCCGCCC 62.056 63.158 0.00 0.00 34.43 6.13
381 382 2.668632 CTTCCGCCCCAGCTGTTA 59.331 61.111 13.81 0.00 36.60 2.41
382 383 1.224592 CTTCCGCCCCAGCTGTTAT 59.775 57.895 13.81 0.00 36.60 1.89
383 384 0.815615 CTTCCGCCCCAGCTGTTATC 60.816 60.000 13.81 0.00 36.60 1.75
384 385 2.587322 TTCCGCCCCAGCTGTTATCG 62.587 60.000 13.81 10.08 36.60 2.92
385 386 2.186903 CGCCCCAGCTGTTATCGT 59.813 61.111 13.81 0.00 36.60 3.73
386 387 1.449601 CGCCCCAGCTGTTATCGTT 60.450 57.895 13.81 0.00 36.60 3.85
387 388 1.705337 CGCCCCAGCTGTTATCGTTG 61.705 60.000 13.81 0.00 36.60 4.10
388 389 1.376609 GCCCCAGCTGTTATCGTTGG 61.377 60.000 13.81 3.60 35.50 3.77
389 390 0.035439 CCCCAGCTGTTATCGTTGGT 60.035 55.000 13.81 0.00 0.00 3.67
390 391 1.613255 CCCCAGCTGTTATCGTTGGTT 60.613 52.381 13.81 0.00 0.00 3.67
391 392 1.468520 CCCAGCTGTTATCGTTGGTTG 59.531 52.381 13.81 0.00 0.00 3.77
392 393 2.151202 CCAGCTGTTATCGTTGGTTGT 58.849 47.619 13.81 0.00 0.00 3.32
393 394 3.331150 CCAGCTGTTATCGTTGGTTGTA 58.669 45.455 13.81 0.00 0.00 2.41
394 395 3.938963 CCAGCTGTTATCGTTGGTTGTAT 59.061 43.478 13.81 0.00 0.00 2.29
395 396 4.034048 CCAGCTGTTATCGTTGGTTGTATC 59.966 45.833 13.81 0.00 0.00 2.24
396 397 3.863424 AGCTGTTATCGTTGGTTGTATCG 59.137 43.478 0.00 0.00 0.00 2.92
397 398 3.000925 GCTGTTATCGTTGGTTGTATCGG 59.999 47.826 0.00 0.00 0.00 4.18
398 399 4.426416 CTGTTATCGTTGGTTGTATCGGA 58.574 43.478 0.00 0.00 0.00 4.55
399 400 5.013568 TGTTATCGTTGGTTGTATCGGAT 57.986 39.130 0.00 0.00 0.00 4.18
400 401 4.806775 TGTTATCGTTGGTTGTATCGGATG 59.193 41.667 0.00 0.00 0.00 3.51
401 402 2.303163 TCGTTGGTTGTATCGGATGG 57.697 50.000 0.00 0.00 0.00 3.51
402 403 1.551430 TCGTTGGTTGTATCGGATGGT 59.449 47.619 0.00 0.00 0.00 3.55
403 404 2.027929 TCGTTGGTTGTATCGGATGGTT 60.028 45.455 0.00 0.00 0.00 3.67
404 405 2.095213 CGTTGGTTGTATCGGATGGTTG 59.905 50.000 0.00 0.00 0.00 3.77
405 406 1.745232 TGGTTGTATCGGATGGTTGC 58.255 50.000 0.00 0.00 0.00 4.17
406 407 1.280710 TGGTTGTATCGGATGGTTGCT 59.719 47.619 0.00 0.00 0.00 3.91
407 408 2.290641 TGGTTGTATCGGATGGTTGCTT 60.291 45.455 0.00 0.00 0.00 3.91
408 409 2.752903 GGTTGTATCGGATGGTTGCTTT 59.247 45.455 0.00 0.00 0.00 3.51
409 410 3.427503 GGTTGTATCGGATGGTTGCTTTG 60.428 47.826 0.00 0.00 0.00 2.77
410 411 3.066291 TGTATCGGATGGTTGCTTTGT 57.934 42.857 0.00 0.00 0.00 2.83
411 412 4.209307 TGTATCGGATGGTTGCTTTGTA 57.791 40.909 0.00 0.00 0.00 2.41
412 413 4.580868 TGTATCGGATGGTTGCTTTGTAA 58.419 39.130 0.00 0.00 0.00 2.41
413 414 5.189928 TGTATCGGATGGTTGCTTTGTAAT 58.810 37.500 0.00 0.00 0.00 1.89
414 415 6.350103 TGTATCGGATGGTTGCTTTGTAATA 58.650 36.000 0.00 0.00 0.00 0.98
415 416 5.751243 ATCGGATGGTTGCTTTGTAATAC 57.249 39.130 0.00 0.00 0.00 1.89
416 417 4.580868 TCGGATGGTTGCTTTGTAATACA 58.419 39.130 0.00 0.00 0.00 2.29
417 418 5.004448 TCGGATGGTTGCTTTGTAATACAA 58.996 37.500 1.08 1.08 36.11 2.41
418 419 5.473846 TCGGATGGTTGCTTTGTAATACAAA 59.526 36.000 16.57 16.57 44.91 2.83
429 430 4.409187 TTGTAATACAAAGTGGGGGAACC 58.591 43.478 2.97 0.00 42.37 3.62
430 431 4.106663 TTGTAATACAAAGTGGGGGAACCT 59.893 41.667 2.97 0.00 42.59 3.50
431 432 5.400421 TTGTAATACAAAGTGGGGGAACCTT 60.400 40.000 2.97 0.00 42.59 3.50
432 433 6.867824 TTGTAATACAAAGTGGGGGAACCTTT 60.868 38.462 2.97 0.00 42.59 3.11
433 434 8.300028 TTGTAATACAAAGTGGGGGAACCTTTT 61.300 37.037 2.97 0.00 42.59 2.27
447 448 6.927933 GGAACCTTTTTCAATCATTGTACG 57.072 37.500 0.00 0.00 0.00 3.67
448 449 6.443792 GGAACCTTTTTCAATCATTGTACGT 58.556 36.000 0.00 0.00 0.00 3.57
449 450 6.362283 GGAACCTTTTTCAATCATTGTACGTG 59.638 38.462 0.00 0.00 0.00 4.49
450 451 5.219633 ACCTTTTTCAATCATTGTACGTGC 58.780 37.500 0.00 0.00 0.00 5.34
451 452 5.009610 ACCTTTTTCAATCATTGTACGTGCT 59.990 36.000 4.97 0.00 0.00 4.40
452 453 5.569059 CCTTTTTCAATCATTGTACGTGCTC 59.431 40.000 4.97 0.00 0.00 4.26
726 737 1.067142 GTGGTGGATCGCTTAGTGTGA 60.067 52.381 0.00 0.00 39.74 3.58
1120 1146 0.683973 ACTGCTCTTGTCCACCTCAG 59.316 55.000 0.00 0.00 0.00 3.35
1298 1326 4.202441 GCTATTCATTCCAGTCACCACAT 58.798 43.478 0.00 0.00 0.00 3.21
1472 1502 0.107456 CTGCCGCTCAGGTATCCATT 59.893 55.000 0.00 0.00 43.70 3.16
1500 1565 2.803133 GCGTGGCTGAATGTAGCATCTA 60.803 50.000 0.00 0.00 45.46 1.98
1511 1576 6.988580 TGAATGTAGCATCTATCTTTCACAGG 59.011 38.462 0.00 0.00 0.00 4.00
1557 1622 7.907841 ATTTCAATCCATCCATTCATTCAGA 57.092 32.000 0.00 0.00 0.00 3.27
1615 1680 0.792640 AGCTTCAACGTTGATCAGCG 59.207 50.000 33.09 27.46 42.78 5.18
1688 1757 2.619074 GGTCAGCTAGCTGGAACCAAAT 60.619 50.000 34.46 5.49 43.75 2.32
1707 1776 9.747898 AACCAAATTACATAGTACTGAATTCCA 57.252 29.630 5.39 0.00 0.00 3.53
1760 1836 2.730404 CGATTCTGAATGCATCTCCGAG 59.270 50.000 7.78 0.00 0.00 4.63
1767 1843 4.371786 TGAATGCATCTCCGAGAATGTAC 58.628 43.478 0.00 0.00 0.00 2.90
1768 1844 4.141959 TGAATGCATCTCCGAGAATGTACA 60.142 41.667 0.00 0.00 0.00 2.90
1772 1857 5.473039 TGCATCTCCGAGAATGTACATATG 58.527 41.667 9.21 7.61 0.00 1.78
1780 1865 6.095720 TCCGAGAATGTACATATGTGTGTGTA 59.904 38.462 18.81 0.00 39.39 2.90
2382 2483 1.517257 GTGATCCAGAGACGCACCG 60.517 63.158 0.00 0.00 0.00 4.94
2417 2518 1.264749 CCTCACCGGGGAGAACATCA 61.265 60.000 35.73 0.00 37.05 3.07
2451 2552 8.237267 GGTTTTTCAAAGACGTGAATATGATCT 58.763 33.333 0.00 0.00 37.36 2.75
2454 2555 7.679659 TTCAAAGACGTGAATATGATCTACG 57.320 36.000 0.00 0.00 40.30 3.51
2455 2556 5.685954 TCAAAGACGTGAATATGATCTACGC 59.314 40.000 0.00 0.00 38.23 4.42
2456 2557 4.162096 AGACGTGAATATGATCTACGCC 57.838 45.455 0.00 0.00 38.23 5.68
2457 2558 3.568430 AGACGTGAATATGATCTACGCCA 59.432 43.478 0.00 0.00 38.23 5.69
2477 2578 3.415212 CATGTTGAGTCAACCATGGTCT 58.585 45.455 28.67 11.45 42.96 3.85
2483 2584 1.420138 AGTCAACCATGGTCTTCGGTT 59.580 47.619 20.07 0.00 43.82 4.44
2585 2686 7.559590 TTACTTAGCTACCTAGTAGTTTCCG 57.440 40.000 0.00 0.00 38.30 4.30
2586 2687 5.749462 ACTTAGCTACCTAGTAGTTTCCGA 58.251 41.667 0.00 0.00 38.30 4.55
2629 2730 6.073927 ACGTAGTAGTTTGCTAGCAGTTTTTC 60.074 38.462 18.45 8.40 41.94 2.29
2630 2731 6.145696 CGTAGTAGTTTGCTAGCAGTTTTTCT 59.854 38.462 18.45 14.63 0.00 2.52
2631 2732 7.327761 CGTAGTAGTTTGCTAGCAGTTTTTCTA 59.672 37.037 18.45 13.73 0.00 2.10
2632 2733 7.659652 AGTAGTTTGCTAGCAGTTTTTCTAG 57.340 36.000 18.45 0.00 36.31 2.43
2707 2808 1.567504 CATCGGTTGTAAGTAGGCCG 58.432 55.000 0.00 0.00 43.32 6.13
2708 2809 0.179092 ATCGGTTGTAAGTAGGCCGC 60.179 55.000 0.00 0.00 41.89 6.53
2710 2811 0.804933 CGGTTGTAAGTAGGCCGCTC 60.805 60.000 0.00 0.00 35.90 5.03
2713 2814 0.535335 TTGTAAGTAGGCCGCTCCAG 59.465 55.000 0.00 0.00 37.29 3.86
2715 2816 0.179108 GTAAGTAGGCCGCTCCAGTG 60.179 60.000 0.00 0.00 37.29 3.66
2721 2822 1.526917 GGCCGCTCCAGTGCAATAT 60.527 57.895 0.00 0.00 34.01 1.28
2722 2823 1.510480 GGCCGCTCCAGTGCAATATC 61.510 60.000 0.00 0.00 34.01 1.63
2724 2825 1.667236 CCGCTCCAGTGCAATATCAA 58.333 50.000 0.00 0.00 0.00 2.57
2725 2826 2.224606 CCGCTCCAGTGCAATATCAAT 58.775 47.619 0.00 0.00 0.00 2.57
2730 2865 3.216800 TCCAGTGCAATATCAATCAGCC 58.783 45.455 0.00 0.00 0.00 4.85
2740 2875 2.105006 TCAATCAGCCTCAAGTGCTC 57.895 50.000 0.00 0.00 36.81 4.26
2742 2877 2.008329 CAATCAGCCTCAAGTGCTCTC 58.992 52.381 0.00 0.00 36.81 3.20
2743 2878 0.540923 ATCAGCCTCAAGTGCTCTCC 59.459 55.000 0.00 0.00 36.81 3.71
2744 2879 1.078567 CAGCCTCAAGTGCTCTCCC 60.079 63.158 0.00 0.00 36.81 4.30
2745 2880 1.537397 AGCCTCAAGTGCTCTCCCA 60.537 57.895 0.00 0.00 32.41 4.37
2748 2883 1.419387 GCCTCAAGTGCTCTCCCATAT 59.581 52.381 0.00 0.00 0.00 1.78
2749 2884 2.809665 GCCTCAAGTGCTCTCCCATATG 60.810 54.545 0.00 0.00 0.00 1.78
2750 2885 2.437281 CCTCAAGTGCTCTCCCATATGT 59.563 50.000 1.24 0.00 0.00 2.29
2751 2886 3.464907 CTCAAGTGCTCTCCCATATGTG 58.535 50.000 1.24 0.00 0.00 3.21
2753 2888 2.941064 CAAGTGCTCTCCCATATGTGTG 59.059 50.000 1.24 0.00 0.00 3.82
2754 2889 2.191400 AGTGCTCTCCCATATGTGTGT 58.809 47.619 1.24 0.00 0.00 3.72
2755 2890 2.093288 AGTGCTCTCCCATATGTGTGTG 60.093 50.000 1.24 0.00 0.00 3.82
2756 2891 1.908619 TGCTCTCCCATATGTGTGTGT 59.091 47.619 1.24 0.00 0.00 3.72
2757 2892 2.305635 TGCTCTCCCATATGTGTGTGTT 59.694 45.455 1.24 0.00 0.00 3.32
2758 2893 2.939103 GCTCTCCCATATGTGTGTGTTC 59.061 50.000 1.24 0.00 0.00 3.18
2759 2894 3.619733 GCTCTCCCATATGTGTGTGTTCA 60.620 47.826 1.24 0.00 0.00 3.18
2760 2895 4.186926 CTCTCCCATATGTGTGTGTTCAG 58.813 47.826 1.24 0.00 0.00 3.02
2763 2898 3.072330 TCCCATATGTGTGTGTTCAGTGT 59.928 43.478 1.24 0.00 0.00 3.55
2764 2899 4.284746 TCCCATATGTGTGTGTTCAGTGTA 59.715 41.667 1.24 0.00 0.00 2.90
2765 2900 4.631377 CCCATATGTGTGTGTTCAGTGTAG 59.369 45.833 1.24 0.00 0.00 2.74
2766 2901 5.478407 CCATATGTGTGTGTTCAGTGTAGA 58.522 41.667 1.24 0.00 0.00 2.59
2767 2902 5.931724 CCATATGTGTGTGTTCAGTGTAGAA 59.068 40.000 1.24 0.00 0.00 2.10
2768 2903 6.091305 CCATATGTGTGTGTTCAGTGTAGAAG 59.909 42.308 1.24 0.00 0.00 2.85
2769 2904 3.194861 TGTGTGTGTTCAGTGTAGAAGC 58.805 45.455 0.00 0.00 0.00 3.86
2770 2905 3.194861 GTGTGTGTTCAGTGTAGAAGCA 58.805 45.455 0.00 0.00 0.00 3.91
2773 2908 4.273235 TGTGTGTTCAGTGTAGAAGCATTG 59.727 41.667 0.00 0.00 0.00 2.82
2774 2909 4.273480 GTGTGTTCAGTGTAGAAGCATTGT 59.727 41.667 0.00 0.00 0.00 2.71
2775 2910 4.881273 TGTGTTCAGTGTAGAAGCATTGTT 59.119 37.500 0.00 0.00 0.00 2.83
2776 2911 5.356751 TGTGTTCAGTGTAGAAGCATTGTTT 59.643 36.000 0.00 0.00 0.00 2.83
2777 2912 6.540551 TGTGTTCAGTGTAGAAGCATTGTTTA 59.459 34.615 0.00 0.00 0.00 2.01
2779 2914 5.862924 TCAGTGTAGAAGCATTGTTTAGC 57.137 39.130 0.00 0.00 0.00 3.09
2780 2915 4.695455 TCAGTGTAGAAGCATTGTTTAGCC 59.305 41.667 0.00 0.00 0.00 3.93
2782 2917 4.455877 AGTGTAGAAGCATTGTTTAGCCAC 59.544 41.667 0.00 0.00 0.00 5.01
2784 2919 5.642063 GTGTAGAAGCATTGTTTAGCCACTA 59.358 40.000 0.00 0.00 0.00 2.74
2785 2920 5.874810 TGTAGAAGCATTGTTTAGCCACTAG 59.125 40.000 0.00 0.00 0.00 2.57
2786 2921 4.911390 AGAAGCATTGTTTAGCCACTAGT 58.089 39.130 0.00 0.00 0.00 2.57
2787 2922 6.049955 AGAAGCATTGTTTAGCCACTAGTA 57.950 37.500 0.00 0.00 0.00 1.82
2788 2923 6.109359 AGAAGCATTGTTTAGCCACTAGTAG 58.891 40.000 0.00 0.00 0.00 2.57
2789 2924 5.422214 AGCATTGTTTAGCCACTAGTAGT 57.578 39.130 0.00 0.00 0.00 2.73
2790 2925 5.420409 AGCATTGTTTAGCCACTAGTAGTC 58.580 41.667 0.00 0.00 0.00 2.59
2791 2926 5.187967 AGCATTGTTTAGCCACTAGTAGTCT 59.812 40.000 0.00 0.00 0.00 3.24
2793 2928 6.697892 GCATTGTTTAGCCACTAGTAGTCTAG 59.302 42.308 0.00 1.37 46.43 2.43
2806 2941 1.654317 AGTCTAGTACGTGAGCTCCG 58.346 55.000 19.02 19.02 0.00 4.63
2807 2942 0.027848 GTCTAGTACGTGAGCTCCGC 59.972 60.000 20.11 9.37 0.00 5.54
2817 2952 2.676822 AGCTCCGCTCCAACTCGA 60.677 61.111 0.00 0.00 30.62 4.04
2818 2953 2.055042 AGCTCCGCTCCAACTCGAT 61.055 57.895 0.00 0.00 30.62 3.59
2819 2954 1.153549 GCTCCGCTCCAACTCGATT 60.154 57.895 0.00 0.00 0.00 3.34
2821 2956 1.269831 GCTCCGCTCCAACTCGATTAT 60.270 52.381 0.00 0.00 0.00 1.28
2822 2957 2.398498 CTCCGCTCCAACTCGATTATG 58.602 52.381 0.00 0.00 0.00 1.90
2823 2958 1.754803 TCCGCTCCAACTCGATTATGT 59.245 47.619 0.00 0.00 0.00 2.29
2824 2959 1.860950 CCGCTCCAACTCGATTATGTG 59.139 52.381 0.00 0.00 0.00 3.21
2825 2960 2.540515 CGCTCCAACTCGATTATGTGT 58.459 47.619 0.00 0.00 0.00 3.72
2827 3676 3.262420 GCTCCAACTCGATTATGTGTGT 58.738 45.455 0.00 0.00 0.00 3.72
2830 3679 4.751060 TCCAACTCGATTATGTGTGTACC 58.249 43.478 0.00 0.00 0.00 3.34
2832 3681 4.328983 CCAACTCGATTATGTGTGTACCAC 59.671 45.833 7.34 7.34 44.78 4.16
2833 3682 4.119442 ACTCGATTATGTGTGTACCACC 57.881 45.455 10.70 0.00 43.85 4.61
2836 3685 3.118920 TCGATTATGTGTGTACCACCCTG 60.119 47.826 10.70 0.00 43.85 4.45
2840 3689 0.105224 TGTGTGTACCACCCTGTTCG 59.895 55.000 10.70 0.00 43.85 3.95
2841 3690 0.105408 GTGTGTACCACCCTGTTCGT 59.895 55.000 3.79 0.00 38.18 3.85
2842 3691 0.105224 TGTGTACCACCCTGTTCGTG 59.895 55.000 0.00 0.00 32.73 4.35
2844 3693 0.390124 TGTACCACCCTGTTCGTGTC 59.610 55.000 0.00 0.00 0.00 3.67
2845 3694 0.320160 GTACCACCCTGTTCGTGTCC 60.320 60.000 0.00 0.00 0.00 4.02
2849 3698 1.152312 ACCCTGTTCGTGTCCTCCT 60.152 57.895 0.00 0.00 0.00 3.69
2852 3701 0.244994 CCTGTTCGTGTCCTCCTCTG 59.755 60.000 0.00 0.00 0.00 3.35
2856 3705 1.536073 TTCGTGTCCTCCTCTGCCAG 61.536 60.000 0.00 0.00 0.00 4.85
2860 3709 0.325577 TGTCCTCCTCTGCCAGCATA 60.326 55.000 0.00 0.00 0.00 3.14
2862 3711 1.071128 CCTCCTCTGCCAGCATAGC 59.929 63.158 0.00 0.00 0.00 2.97
2866 3715 1.133356 TCCTCTGCCAGCATAGCTAGA 60.133 52.381 0.00 0.00 36.40 2.43
2867 3716 1.000731 CCTCTGCCAGCATAGCTAGAC 59.999 57.143 0.00 0.00 36.40 2.59
2868 3717 1.685517 CTCTGCCAGCATAGCTAGACA 59.314 52.381 0.00 0.00 36.40 3.41
2870 3719 2.298446 TCTGCCAGCATAGCTAGACATC 59.702 50.000 0.00 0.00 36.40 3.06
2871 3720 1.345741 TGCCAGCATAGCTAGACATCC 59.654 52.381 0.00 0.00 36.40 3.51
2872 3721 1.345741 GCCAGCATAGCTAGACATCCA 59.654 52.381 0.00 0.00 36.40 3.41
2873 3722 2.612471 GCCAGCATAGCTAGACATCCAG 60.612 54.545 0.00 0.00 36.40 3.86
2875 3724 2.036862 CAGCATAGCTAGACATCCAGCA 59.963 50.000 0.00 0.00 40.36 4.41
2877 3726 2.036992 GCATAGCTAGACATCCAGCAGT 59.963 50.000 0.00 0.00 40.36 4.40
2878 3727 3.256879 GCATAGCTAGACATCCAGCAGTA 59.743 47.826 0.00 0.00 40.36 2.74
2879 3728 4.617995 GCATAGCTAGACATCCAGCAGTAG 60.618 50.000 0.00 0.00 40.36 2.57
2880 3729 3.025322 AGCTAGACATCCAGCAGTAGT 57.975 47.619 2.16 0.00 40.36 2.73
2881 3730 3.370104 AGCTAGACATCCAGCAGTAGTT 58.630 45.455 2.16 0.00 40.36 2.24
2882 3731 3.383185 AGCTAGACATCCAGCAGTAGTTC 59.617 47.826 2.16 0.00 40.36 3.01
2883 3732 3.131223 GCTAGACATCCAGCAGTAGTTCA 59.869 47.826 0.00 0.00 37.73 3.18
2884 3733 4.202202 GCTAGACATCCAGCAGTAGTTCAT 60.202 45.833 0.00 0.00 37.73 2.57
2885 3734 4.399004 AGACATCCAGCAGTAGTTCATC 57.601 45.455 0.00 0.00 0.00 2.92
2887 3736 5.204292 AGACATCCAGCAGTAGTTCATCTA 58.796 41.667 0.00 0.00 0.00 1.98
2888 3737 5.837979 AGACATCCAGCAGTAGTTCATCTAT 59.162 40.000 0.00 0.00 0.00 1.98
2889 3738 7.007116 AGACATCCAGCAGTAGTTCATCTATA 58.993 38.462 0.00 0.00 0.00 1.31
2890 3739 7.176515 AGACATCCAGCAGTAGTTCATCTATAG 59.823 40.741 0.00 0.00 0.00 1.31
2891 3740 6.780031 ACATCCAGCAGTAGTTCATCTATAGT 59.220 38.462 0.00 0.00 0.00 2.12
2892 3741 6.885952 TCCAGCAGTAGTTCATCTATAGTC 57.114 41.667 0.00 0.00 0.00 2.59
2893 3742 6.606069 TCCAGCAGTAGTTCATCTATAGTCT 58.394 40.000 0.00 0.00 0.00 3.24
2894 3743 7.746703 TCCAGCAGTAGTTCATCTATAGTCTA 58.253 38.462 0.00 0.00 0.00 2.59
2895 3744 8.387039 TCCAGCAGTAGTTCATCTATAGTCTAT 58.613 37.037 0.00 0.00 0.00 1.98
2896 3745 9.674068 CCAGCAGTAGTTCATCTATAGTCTATA 57.326 37.037 0.00 0.00 0.00 1.31
2905 3754 9.463902 GTTCATCTATAGTCTATAGTTGGGCTA 57.536 37.037 24.90 12.14 38.28 3.93
2907 3756 9.463902 TCATCTATAGTCTATAGTTGGGCTAAC 57.536 37.037 24.90 5.49 38.28 2.34
2936 3796 2.104111 ACACGTCACAAGGAAGGAATGA 59.896 45.455 0.00 0.00 0.00 2.57
2941 3801 4.537015 GTCACAAGGAAGGAATGAAAACG 58.463 43.478 0.00 0.00 0.00 3.60
2949 3809 1.395805 GGAATGAAAACGCGCGCTTC 61.396 55.000 32.58 30.08 0.00 3.86
2990 5018 2.852495 TAGCAGCGCCAACCTACAGC 62.852 60.000 2.29 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.423154 CGGAGCTCGCCACCAAAC 61.423 66.667 7.83 0.00 0.00 2.93
1 2 3.171828 TTCGGAGCTCGCCACCAAA 62.172 57.895 7.83 0.00 39.05 3.28
2 3 3.589654 CTTCGGAGCTCGCCACCAA 62.590 63.158 7.83 0.00 39.05 3.67
3 4 4.069232 CTTCGGAGCTCGCCACCA 62.069 66.667 7.83 0.00 39.05 4.17
4 5 4.070552 ACTTCGGAGCTCGCCACC 62.071 66.667 7.83 0.00 39.05 4.61
5 6 2.811317 CACTTCGGAGCTCGCCAC 60.811 66.667 7.83 0.00 39.05 5.01
6 7 4.742201 GCACTTCGGAGCTCGCCA 62.742 66.667 7.83 0.00 39.05 5.69
8 9 4.443266 AGGCACTTCGGAGCTCGC 62.443 66.667 7.83 3.93 39.05 5.03
9 10 2.507992 CAGGCACTTCGGAGCTCG 60.508 66.667 7.83 3.33 34.60 5.03
10 11 1.153667 CTCAGGCACTTCGGAGCTC 60.154 63.158 4.71 4.71 34.60 4.09
11 12 2.654079 CCTCAGGCACTTCGGAGCT 61.654 63.158 0.00 0.00 34.60 4.09
12 13 1.605058 TACCTCAGGCACTTCGGAGC 61.605 60.000 0.00 0.00 34.60 4.70
13 14 0.457851 CTACCTCAGGCACTTCGGAG 59.542 60.000 0.00 0.00 34.60 4.63
14 15 0.039180 TCTACCTCAGGCACTTCGGA 59.961 55.000 0.00 0.00 34.60 4.55
15 16 0.457851 CTCTACCTCAGGCACTTCGG 59.542 60.000 0.00 0.00 34.60 4.30
16 17 0.457851 CCTCTACCTCAGGCACTTCG 59.542 60.000 0.00 0.00 34.60 3.79
23 24 2.802719 GATCCTAGCCTCTACCTCAGG 58.197 57.143 0.00 0.00 0.00 3.86
24 25 2.432444 CGATCCTAGCCTCTACCTCAG 58.568 57.143 0.00 0.00 0.00 3.35
25 26 1.074084 CCGATCCTAGCCTCTACCTCA 59.926 57.143 0.00 0.00 0.00 3.86
26 27 1.351683 TCCGATCCTAGCCTCTACCTC 59.648 57.143 0.00 0.00 0.00 3.85
27 28 1.447099 TCCGATCCTAGCCTCTACCT 58.553 55.000 0.00 0.00 0.00 3.08
28 29 2.164338 CTTCCGATCCTAGCCTCTACC 58.836 57.143 0.00 0.00 0.00 3.18
29 30 3.143211 TCTTCCGATCCTAGCCTCTAC 57.857 52.381 0.00 0.00 0.00 2.59
30 31 3.878237 TTCTTCCGATCCTAGCCTCTA 57.122 47.619 0.00 0.00 0.00 2.43
31 32 2.757894 TTCTTCCGATCCTAGCCTCT 57.242 50.000 0.00 0.00 0.00 3.69
32 33 3.306433 GGATTTCTTCCGATCCTAGCCTC 60.306 52.174 0.00 0.00 39.00 4.70
33 34 2.635427 GGATTTCTTCCGATCCTAGCCT 59.365 50.000 0.00 0.00 39.00 4.58
34 35 2.289756 GGGATTTCTTCCGATCCTAGCC 60.290 54.545 2.74 0.00 46.52 3.93
35 36 2.635427 AGGGATTTCTTCCGATCCTAGC 59.365 50.000 2.74 0.00 46.52 3.42
36 37 3.643792 ACAGGGATTTCTTCCGATCCTAG 59.356 47.826 2.74 0.00 46.52 3.02
37 38 3.654273 ACAGGGATTTCTTCCGATCCTA 58.346 45.455 2.74 0.00 46.52 2.94
38 39 2.482494 ACAGGGATTTCTTCCGATCCT 58.518 47.619 2.74 0.00 46.52 3.24
39 40 2.945668 CAACAGGGATTTCTTCCGATCC 59.054 50.000 0.00 0.00 46.52 3.36
40 41 2.945668 CCAACAGGGATTTCTTCCGATC 59.054 50.000 0.00 0.00 46.52 3.69
41 42 2.945890 GCCAACAGGGATTTCTTCCGAT 60.946 50.000 0.00 0.00 46.52 4.18
42 43 1.613255 GCCAACAGGGATTTCTTCCGA 60.613 52.381 0.00 0.00 46.52 4.55
43 44 0.811281 GCCAACAGGGATTTCTTCCG 59.189 55.000 0.00 0.00 46.52 4.30
44 45 2.222227 AGCCAACAGGGATTTCTTCC 57.778 50.000 0.00 0.00 44.62 3.46
45 46 2.232208 CCAAGCCAACAGGGATTTCTTC 59.768 50.000 0.00 0.00 44.71 2.87
46 47 2.250924 CCAAGCCAACAGGGATTTCTT 58.749 47.619 0.00 0.00 44.71 2.52
47 48 1.928868 CCAAGCCAACAGGGATTTCT 58.071 50.000 0.00 0.00 44.71 2.52
48 49 0.247460 GCCAAGCCAACAGGGATTTC 59.753 55.000 0.00 0.00 44.71 2.17
49 50 1.194121 GGCCAAGCCAACAGGGATTT 61.194 55.000 0.00 0.00 44.71 2.17
55 56 2.908073 GTGTCGGCCAAGCCAACAG 61.908 63.158 2.24 0.00 46.87 3.16
60 61 4.778143 ATCGGTGTCGGCCAAGCC 62.778 66.667 2.24 0.00 46.75 4.35
61 62 3.499737 CATCGGTGTCGGCCAAGC 61.500 66.667 2.24 0.00 36.95 4.01
62 63 3.499737 GCATCGGTGTCGGCCAAG 61.500 66.667 2.24 0.00 36.95 3.61
75 76 3.490759 CTCACACGCCACCGCATC 61.491 66.667 0.00 0.00 38.22 3.91
80 81 3.936203 TCACCCTCACACGCCACC 61.936 66.667 0.00 0.00 0.00 4.61
81 82 2.665185 GTCACCCTCACACGCCAC 60.665 66.667 0.00 0.00 0.00 5.01
82 83 4.293648 CGTCACCCTCACACGCCA 62.294 66.667 0.00 0.00 0.00 5.69
88 89 4.736896 GTCCGGCGTCACCCTCAC 62.737 72.222 6.01 0.00 33.26 3.51
92 93 4.754667 GAAGGTCCGGCGTCACCC 62.755 72.222 18.68 7.34 32.45 4.61
93 94 4.754667 GGAAGGTCCGGCGTCACC 62.755 72.222 15.52 15.52 0.00 4.02
94 95 3.692406 AGGAAGGTCCGGCGTCAC 61.692 66.667 6.01 1.35 42.75 3.67
95 96 3.691342 CAGGAAGGTCCGGCGTCA 61.691 66.667 6.01 0.00 42.75 4.35
96 97 2.837371 CTTCAGGAAGGTCCGGCGTC 62.837 65.000 6.01 0.00 42.75 5.19
97 98 2.920912 TTCAGGAAGGTCCGGCGT 60.921 61.111 6.01 0.00 42.75 5.68
98 99 2.125512 CTTCAGGAAGGTCCGGCG 60.126 66.667 0.00 0.00 42.75 6.46
106 107 2.125512 CCGACGCCCTTCAGGAAG 60.126 66.667 2.01 2.01 38.24 3.46
107 108 3.702048 CCCGACGCCCTTCAGGAA 61.702 66.667 0.00 0.00 38.24 3.36
112 113 4.525949 GTAGCCCCGACGCCCTTC 62.526 72.222 0.00 0.00 0.00 3.46
116 117 4.091939 AAAGGTAGCCCCGACGCC 62.092 66.667 0.00 0.00 38.74 5.68
117 118 2.510918 GAAAGGTAGCCCCGACGC 60.511 66.667 0.00 0.00 38.74 5.19
118 119 2.186125 GGAAAGGTAGCCCCGACG 59.814 66.667 0.00 0.00 38.74 5.12
119 120 0.976590 AGAGGAAAGGTAGCCCCGAC 60.977 60.000 0.00 0.00 38.74 4.79
120 121 0.686769 GAGAGGAAAGGTAGCCCCGA 60.687 60.000 0.00 0.00 38.74 5.14
121 122 0.688087 AGAGAGGAAAGGTAGCCCCG 60.688 60.000 0.00 0.00 38.74 5.73
122 123 1.124780 GAGAGAGGAAAGGTAGCCCC 58.875 60.000 0.00 0.00 0.00 5.80
123 124 1.124780 GGAGAGAGGAAAGGTAGCCC 58.875 60.000 0.00 0.00 0.00 5.19
124 125 2.036387 GAGGAGAGAGGAAAGGTAGCC 58.964 57.143 0.00 0.00 0.00 3.93
125 126 1.679153 CGAGGAGAGAGGAAAGGTAGC 59.321 57.143 0.00 0.00 0.00 3.58
126 127 1.679153 GCGAGGAGAGAGGAAAGGTAG 59.321 57.143 0.00 0.00 0.00 3.18
127 128 1.685491 GGCGAGGAGAGAGGAAAGGTA 60.685 57.143 0.00 0.00 0.00 3.08
128 129 0.973496 GGCGAGGAGAGAGGAAAGGT 60.973 60.000 0.00 0.00 0.00 3.50
129 130 1.819905 GGCGAGGAGAGAGGAAAGG 59.180 63.158 0.00 0.00 0.00 3.11
130 131 1.316706 ACGGCGAGGAGAGAGGAAAG 61.317 60.000 16.62 0.00 0.00 2.62
131 132 1.304217 ACGGCGAGGAGAGAGGAAA 60.304 57.895 16.62 0.00 0.00 3.13
132 133 2.046864 CACGGCGAGGAGAGAGGAA 61.047 63.158 16.62 0.00 0.00 3.36
133 134 1.907222 TACACGGCGAGGAGAGAGGA 61.907 60.000 16.62 0.00 0.00 3.71
134 135 0.820074 ATACACGGCGAGGAGAGAGG 60.820 60.000 16.62 0.00 0.00 3.69
135 136 0.589223 GATACACGGCGAGGAGAGAG 59.411 60.000 16.62 0.00 0.00 3.20
136 137 1.158484 CGATACACGGCGAGGAGAGA 61.158 60.000 16.62 0.00 38.46 3.10
137 138 1.280142 CGATACACGGCGAGGAGAG 59.720 63.158 16.62 0.00 38.46 3.20
138 139 3.417601 CGATACACGGCGAGGAGA 58.582 61.111 16.62 0.00 38.46 3.71
147 148 1.153309 GGGTTTCCCCCGATACACG 60.153 63.158 0.00 0.00 45.80 4.49
148 149 4.970621 GGGTTTCCCCCGATACAC 57.029 61.111 0.00 0.00 45.80 2.90
157 158 2.203625 TGCTGCCAAGGGTTTCCC 60.204 61.111 0.00 0.00 45.90 3.97
158 159 0.251165 TACTGCTGCCAAGGGTTTCC 60.251 55.000 0.00 0.00 0.00 3.13
159 160 1.745653 GATACTGCTGCCAAGGGTTTC 59.254 52.381 0.00 0.00 0.00 2.78
160 161 1.839424 GATACTGCTGCCAAGGGTTT 58.161 50.000 0.00 0.00 0.00 3.27
161 162 0.392998 CGATACTGCTGCCAAGGGTT 60.393 55.000 0.00 0.00 0.00 4.11
162 163 1.221840 CGATACTGCTGCCAAGGGT 59.778 57.895 0.00 0.00 0.00 4.34
163 164 0.811616 GACGATACTGCTGCCAAGGG 60.812 60.000 0.00 0.00 0.00 3.95
164 165 0.108186 TGACGATACTGCTGCCAAGG 60.108 55.000 0.00 0.00 0.00 3.61
165 166 1.863454 GATGACGATACTGCTGCCAAG 59.137 52.381 0.00 0.00 0.00 3.61
166 167 1.802508 CGATGACGATACTGCTGCCAA 60.803 52.381 0.00 0.00 42.66 4.52
167 168 0.249031 CGATGACGATACTGCTGCCA 60.249 55.000 0.00 0.00 42.66 4.92
168 169 0.249073 ACGATGACGATACTGCTGCC 60.249 55.000 0.00 0.00 42.66 4.85
169 170 1.124462 GACGATGACGATACTGCTGC 58.876 55.000 0.00 0.00 42.66 5.25
170 171 1.389853 CGACGATGACGATACTGCTG 58.610 55.000 0.00 0.00 42.66 4.41
171 172 0.317103 GCGACGATGACGATACTGCT 60.317 55.000 0.00 0.00 42.66 4.24
172 173 1.589154 CGCGACGATGACGATACTGC 61.589 60.000 0.00 0.00 42.66 4.40
173 174 0.315951 ACGCGACGATGACGATACTG 60.316 55.000 15.93 0.00 42.66 2.74
174 175 0.376152 AACGCGACGATGACGATACT 59.624 50.000 15.93 0.00 42.66 2.12
175 176 0.763077 GAACGCGACGATGACGATAC 59.237 55.000 15.93 0.00 42.66 2.24
176 177 0.316442 GGAACGCGACGATGACGATA 60.316 55.000 15.93 0.00 42.66 2.92
177 178 1.585521 GGAACGCGACGATGACGAT 60.586 57.895 15.93 0.00 42.66 3.73
178 179 2.191354 AAGGAACGCGACGATGACGA 62.191 55.000 15.93 0.00 42.66 4.20
179 180 1.730593 GAAGGAACGCGACGATGACG 61.731 60.000 15.93 0.00 45.75 4.35
180 181 0.456312 AGAAGGAACGCGACGATGAC 60.456 55.000 15.93 0.00 0.00 3.06
181 182 0.242825 AAGAAGGAACGCGACGATGA 59.757 50.000 15.93 0.00 0.00 2.92
182 183 0.366871 CAAGAAGGAACGCGACGATG 59.633 55.000 15.93 0.00 0.00 3.84
183 184 0.736325 CCAAGAAGGAACGCGACGAT 60.736 55.000 15.93 0.00 41.22 3.73
184 185 1.372499 CCAAGAAGGAACGCGACGA 60.372 57.895 15.93 0.00 41.22 4.20
185 186 1.372499 TCCAAGAAGGAACGCGACG 60.372 57.895 15.93 0.00 45.65 5.12
186 187 4.667420 TCCAAGAAGGAACGCGAC 57.333 55.556 15.93 6.28 45.65 5.19
193 194 5.060427 TCAATCAAAACCTCCAAGAAGGA 57.940 39.130 0.00 0.00 46.75 3.36
194 195 5.990120 ATCAATCAAAACCTCCAAGAAGG 57.010 39.130 0.00 0.00 42.55 3.46
195 196 6.403636 CGGTATCAATCAAAACCTCCAAGAAG 60.404 42.308 0.00 0.00 0.00 2.85
196 197 5.414454 CGGTATCAATCAAAACCTCCAAGAA 59.586 40.000 0.00 0.00 0.00 2.52
197 198 4.941263 CGGTATCAATCAAAACCTCCAAGA 59.059 41.667 0.00 0.00 0.00 3.02
198 199 4.096382 CCGGTATCAATCAAAACCTCCAAG 59.904 45.833 0.00 0.00 0.00 3.61
199 200 4.013728 CCGGTATCAATCAAAACCTCCAA 58.986 43.478 0.00 0.00 0.00 3.53
200 201 3.616219 CCGGTATCAATCAAAACCTCCA 58.384 45.455 0.00 0.00 0.00 3.86
201 202 2.357952 GCCGGTATCAATCAAAACCTCC 59.642 50.000 1.90 0.00 0.00 4.30
202 203 2.031683 CGCCGGTATCAATCAAAACCTC 59.968 50.000 1.90 0.00 0.00 3.85
203 204 2.014128 CGCCGGTATCAATCAAAACCT 58.986 47.619 1.90 0.00 0.00 3.50
204 205 1.533129 GCGCCGGTATCAATCAAAACC 60.533 52.381 1.90 0.00 0.00 3.27
205 206 1.400494 AGCGCCGGTATCAATCAAAAC 59.600 47.619 2.29 0.00 0.00 2.43
206 207 1.745232 AGCGCCGGTATCAATCAAAA 58.255 45.000 2.29 0.00 0.00 2.44
207 208 1.668751 GAAGCGCCGGTATCAATCAAA 59.331 47.619 2.29 0.00 0.00 2.69
208 209 1.295792 GAAGCGCCGGTATCAATCAA 58.704 50.000 2.29 0.00 0.00 2.57
209 210 0.874175 CGAAGCGCCGGTATCAATCA 60.874 55.000 2.29 0.00 0.00 2.57
210 211 1.557443 CCGAAGCGCCGGTATCAATC 61.557 60.000 15.87 0.00 44.23 2.67
211 212 1.594293 CCGAAGCGCCGGTATCAAT 60.594 57.895 15.87 0.00 44.23 2.57
212 213 2.202824 CCGAAGCGCCGGTATCAA 60.203 61.111 15.87 0.00 44.23 2.57
220 221 4.856607 CCGAGACTCCGAAGCGCC 62.857 72.222 2.29 0.00 0.00 6.53
221 222 3.743091 CTCCGAGACTCCGAAGCGC 62.743 68.421 0.00 0.00 0.00 5.92
222 223 2.405594 CTCCGAGACTCCGAAGCG 59.594 66.667 0.00 0.00 0.00 4.68
223 224 1.939769 AAGCTCCGAGACTCCGAAGC 61.940 60.000 0.00 9.33 0.00 3.86
224 225 0.179150 CAAGCTCCGAGACTCCGAAG 60.179 60.000 0.00 0.00 0.00 3.79
225 226 1.595993 CCAAGCTCCGAGACTCCGAA 61.596 60.000 0.00 0.00 0.00 4.30
226 227 2.046864 CCAAGCTCCGAGACTCCGA 61.047 63.158 0.00 0.00 0.00 4.55
227 228 2.344203 ACCAAGCTCCGAGACTCCG 61.344 63.158 0.00 0.00 0.00 4.63
228 229 1.216710 CACCAAGCTCCGAGACTCC 59.783 63.158 0.00 0.00 0.00 3.85
229 230 1.446966 GCACCAAGCTCCGAGACTC 60.447 63.158 0.00 0.00 41.15 3.36
230 231 2.659610 GCACCAAGCTCCGAGACT 59.340 61.111 0.00 0.00 41.15 3.24
231 232 2.811317 CGCACCAAGCTCCGAGAC 60.811 66.667 0.00 0.00 42.61 3.36
232 233 4.742201 GCGCACCAAGCTCCGAGA 62.742 66.667 0.30 0.00 42.61 4.04
236 237 3.567797 GATCGCGCACCAAGCTCC 61.568 66.667 8.75 0.00 42.61 4.70
237 238 2.510238 AGATCGCGCACCAAGCTC 60.510 61.111 8.75 0.00 42.61 4.09
238 239 2.510238 GAGATCGCGCACCAAGCT 60.510 61.111 8.75 0.00 42.61 3.74
239 240 3.567797 GGAGATCGCGCACCAAGC 61.568 66.667 8.75 0.00 40.87 4.01
240 241 3.257561 CGGAGATCGCGCACCAAG 61.258 66.667 8.75 0.00 0.00 3.61
241 242 4.812476 CCGGAGATCGCGCACCAA 62.812 66.667 8.75 0.00 37.59 3.67
247 248 4.907034 CGTCCACCGGAGATCGCG 62.907 72.222 9.46 0.00 37.59 5.87
248 249 2.475466 TACGTCCACCGGAGATCGC 61.475 63.158 9.46 0.00 42.24 4.58
249 250 3.817787 TACGTCCACCGGAGATCG 58.182 61.111 9.46 11.24 42.24 3.69
255 256 4.487412 GACCGCTACGTCCACCGG 62.487 72.222 0.00 0.00 45.80 5.28
256 257 3.740397 TGACCGCTACGTCCACCG 61.740 66.667 0.00 0.00 44.03 4.94
257 258 2.126189 GTGACCGCTACGTCCACC 60.126 66.667 0.00 0.00 31.35 4.61
258 259 2.503375 CGTGACCGCTACGTCCAC 60.503 66.667 0.00 0.00 36.83 4.02
259 260 2.669229 TCGTGACCGCTACGTCCA 60.669 61.111 0.00 0.00 41.91 4.02
260 261 2.099831 CTCGTGACCGCTACGTCC 59.900 66.667 0.00 0.00 41.91 4.79
261 262 1.225963 GTCTCGTGACCGCTACGTC 60.226 63.158 6.35 0.00 41.91 4.34
262 263 1.233285 AAGTCTCGTGACCGCTACGT 61.233 55.000 13.70 0.00 43.91 3.57
263 264 0.520827 GAAGTCTCGTGACCGCTACG 60.521 60.000 13.70 0.00 43.91 3.51
264 265 0.520404 TGAAGTCTCGTGACCGCTAC 59.480 55.000 13.70 2.92 43.91 3.58
265 266 1.400846 GATGAAGTCTCGTGACCGCTA 59.599 52.381 13.70 0.00 43.91 4.26
266 267 0.171455 GATGAAGTCTCGTGACCGCT 59.829 55.000 13.70 0.00 43.91 5.52
267 268 1.134530 CGATGAAGTCTCGTGACCGC 61.135 60.000 13.70 7.11 43.91 5.68
268 269 0.168348 ACGATGAAGTCTCGTGACCG 59.832 55.000 13.70 11.77 46.76 4.79
274 275 3.424198 TCGACAAAAACGATGAAGTCTCG 59.576 43.478 0.00 0.00 41.77 4.04
275 276 4.966850 TCGACAAAAACGATGAAGTCTC 57.033 40.909 0.00 0.00 34.85 3.36
284 285 0.787787 CAGCGGATCGACAAAAACGA 59.212 50.000 0.00 0.00 43.65 3.85
285 286 0.511221 ACAGCGGATCGACAAAAACG 59.489 50.000 0.00 0.00 0.00 3.60
286 287 2.681152 AACAGCGGATCGACAAAAAC 57.319 45.000 0.00 0.00 0.00 2.43
287 288 3.061563 CGATAACAGCGGATCGACAAAAA 59.938 43.478 2.46 0.00 46.19 1.94
288 289 2.601314 CGATAACAGCGGATCGACAAAA 59.399 45.455 2.46 0.00 46.19 2.44
289 290 2.190161 CGATAACAGCGGATCGACAAA 58.810 47.619 2.46 0.00 46.19 2.83
290 291 1.835121 CGATAACAGCGGATCGACAA 58.165 50.000 2.46 0.00 46.19 3.18
291 292 3.544615 CGATAACAGCGGATCGACA 57.455 52.632 2.46 0.00 46.19 4.35
299 300 2.542766 AACAAATGCCGATAACAGCG 57.457 45.000 0.00 0.00 0.00 5.18
300 301 4.096732 AGAAACAAATGCCGATAACAGC 57.903 40.909 0.00 0.00 0.00 4.40
301 302 6.863126 AGAAAAGAAACAAATGCCGATAACAG 59.137 34.615 0.00 0.00 0.00 3.16
302 303 6.744112 AGAAAAGAAACAAATGCCGATAACA 58.256 32.000 0.00 0.00 0.00 2.41
303 304 7.637709 AAGAAAAGAAACAAATGCCGATAAC 57.362 32.000 0.00 0.00 0.00 1.89
304 305 8.655651 AAAAGAAAAGAAACAAATGCCGATAA 57.344 26.923 0.00 0.00 0.00 1.75
305 306 8.655651 AAAAAGAAAAGAAACAAATGCCGATA 57.344 26.923 0.00 0.00 0.00 2.92
306 307 7.552458 AAAAAGAAAAGAAACAAATGCCGAT 57.448 28.000 0.00 0.00 0.00 4.18
307 308 6.976636 AAAAAGAAAAGAAACAAATGCCGA 57.023 29.167 0.00 0.00 0.00 5.54
327 328 7.766738 ACGCCCAAAATAAAAGAAAGAGAAAAA 59.233 29.630 0.00 0.00 0.00 1.94
328 329 7.223777 CACGCCCAAAATAAAAGAAAGAGAAAA 59.776 33.333 0.00 0.00 0.00 2.29
329 330 6.699642 CACGCCCAAAATAAAAGAAAGAGAAA 59.300 34.615 0.00 0.00 0.00 2.52
330 331 6.039941 TCACGCCCAAAATAAAAGAAAGAGAA 59.960 34.615 0.00 0.00 0.00 2.87
331 332 5.533154 TCACGCCCAAAATAAAAGAAAGAGA 59.467 36.000 0.00 0.00 0.00 3.10
332 333 5.768317 TCACGCCCAAAATAAAAGAAAGAG 58.232 37.500 0.00 0.00 0.00 2.85
333 334 5.776173 TCACGCCCAAAATAAAAGAAAGA 57.224 34.783 0.00 0.00 0.00 2.52
334 335 6.423604 ACAATCACGCCCAAAATAAAAGAAAG 59.576 34.615 0.00 0.00 0.00 2.62
335 336 6.201806 CACAATCACGCCCAAAATAAAAGAAA 59.798 34.615 0.00 0.00 0.00 2.52
336 337 5.694006 CACAATCACGCCCAAAATAAAAGAA 59.306 36.000 0.00 0.00 0.00 2.52
337 338 5.226396 CACAATCACGCCCAAAATAAAAGA 58.774 37.500 0.00 0.00 0.00 2.52
338 339 4.143137 GCACAATCACGCCCAAAATAAAAG 60.143 41.667 0.00 0.00 0.00 2.27
339 340 3.743396 GCACAATCACGCCCAAAATAAAA 59.257 39.130 0.00 0.00 0.00 1.52
340 341 3.006323 AGCACAATCACGCCCAAAATAAA 59.994 39.130 0.00 0.00 0.00 1.40
341 342 2.560542 AGCACAATCACGCCCAAAATAA 59.439 40.909 0.00 0.00 0.00 1.40
342 343 2.094803 CAGCACAATCACGCCCAAAATA 60.095 45.455 0.00 0.00 0.00 1.40
343 344 0.968405 AGCACAATCACGCCCAAAAT 59.032 45.000 0.00 0.00 0.00 1.82
344 345 0.031857 CAGCACAATCACGCCCAAAA 59.968 50.000 0.00 0.00 0.00 2.44
345 346 1.659233 CAGCACAATCACGCCCAAA 59.341 52.632 0.00 0.00 0.00 3.28
346 347 2.918345 GCAGCACAATCACGCCCAA 61.918 57.895 0.00 0.00 0.00 4.12
347 348 3.364441 GCAGCACAATCACGCCCA 61.364 61.111 0.00 0.00 0.00 5.36
348 349 2.533391 GAAGCAGCACAATCACGCCC 62.533 60.000 0.00 0.00 0.00 6.13
349 350 1.154150 GAAGCAGCACAATCACGCC 60.154 57.895 0.00 0.00 0.00 5.68
350 351 1.154150 GGAAGCAGCACAATCACGC 60.154 57.895 0.00 0.00 0.00 5.34
351 352 1.133253 CGGAAGCAGCACAATCACG 59.867 57.895 0.00 0.00 0.00 4.35
364 365 0.815615 GATAACAGCTGGGGCGGAAG 60.816 60.000 19.93 0.00 44.37 3.46
365 366 1.223487 GATAACAGCTGGGGCGGAA 59.777 57.895 19.93 0.00 44.37 4.30
366 367 2.908015 GATAACAGCTGGGGCGGA 59.092 61.111 19.93 0.00 44.37 5.54
367 368 2.588877 CGATAACAGCTGGGGCGG 60.589 66.667 19.93 0.00 44.37 6.13
368 369 1.449601 AACGATAACAGCTGGGGCG 60.450 57.895 19.93 17.32 44.37 6.13
369 370 1.376609 CCAACGATAACAGCTGGGGC 61.377 60.000 19.93 3.37 39.06 5.80
370 371 0.035439 ACCAACGATAACAGCTGGGG 60.035 55.000 19.93 8.31 0.00 4.96
371 372 1.468520 CAACCAACGATAACAGCTGGG 59.531 52.381 19.93 9.25 0.00 4.45
372 373 2.151202 ACAACCAACGATAACAGCTGG 58.849 47.619 19.93 1.54 0.00 4.85
373 374 4.259810 CGATACAACCAACGATAACAGCTG 60.260 45.833 13.48 13.48 0.00 4.24
374 375 3.863424 CGATACAACCAACGATAACAGCT 59.137 43.478 0.00 0.00 0.00 4.24
375 376 3.000925 CCGATACAACCAACGATAACAGC 59.999 47.826 0.00 0.00 0.00 4.40
376 377 4.426416 TCCGATACAACCAACGATAACAG 58.574 43.478 0.00 0.00 0.00 3.16
377 378 4.453177 TCCGATACAACCAACGATAACA 57.547 40.909 0.00 0.00 0.00 2.41
378 379 4.210537 CCATCCGATACAACCAACGATAAC 59.789 45.833 0.00 0.00 0.00 1.89
379 380 4.141892 ACCATCCGATACAACCAACGATAA 60.142 41.667 0.00 0.00 0.00 1.75
380 381 3.385433 ACCATCCGATACAACCAACGATA 59.615 43.478 0.00 0.00 0.00 2.92
381 382 2.169769 ACCATCCGATACAACCAACGAT 59.830 45.455 0.00 0.00 0.00 3.73
382 383 1.551430 ACCATCCGATACAACCAACGA 59.449 47.619 0.00 0.00 0.00 3.85
383 384 2.018542 ACCATCCGATACAACCAACG 57.981 50.000 0.00 0.00 0.00 4.10
384 385 2.159435 GCAACCATCCGATACAACCAAC 60.159 50.000 0.00 0.00 0.00 3.77
385 386 2.088423 GCAACCATCCGATACAACCAA 58.912 47.619 0.00 0.00 0.00 3.67
386 387 1.280710 AGCAACCATCCGATACAACCA 59.719 47.619 0.00 0.00 0.00 3.67
387 388 2.038387 AGCAACCATCCGATACAACC 57.962 50.000 0.00 0.00 0.00 3.77
388 389 3.190535 ACAAAGCAACCATCCGATACAAC 59.809 43.478 0.00 0.00 0.00 3.32
389 390 3.417101 ACAAAGCAACCATCCGATACAA 58.583 40.909 0.00 0.00 0.00 2.41
390 391 3.066291 ACAAAGCAACCATCCGATACA 57.934 42.857 0.00 0.00 0.00 2.29
391 392 5.751243 ATTACAAAGCAACCATCCGATAC 57.249 39.130 0.00 0.00 0.00 2.24
392 393 6.350103 TGTATTACAAAGCAACCATCCGATA 58.650 36.000 0.00 0.00 0.00 2.92
393 394 5.189928 TGTATTACAAAGCAACCATCCGAT 58.810 37.500 0.00 0.00 0.00 4.18
394 395 4.580868 TGTATTACAAAGCAACCATCCGA 58.419 39.130 0.00 0.00 0.00 4.55
395 396 4.955925 TGTATTACAAAGCAACCATCCG 57.044 40.909 0.00 0.00 0.00 4.18
406 407 4.833938 GGTTCCCCCACTTTGTATTACAAA 59.166 41.667 18.39 18.39 44.91 2.83
407 408 4.106663 AGGTTCCCCCACTTTGTATTACAA 59.893 41.667 5.14 5.14 33.73 2.41
408 409 3.658705 AGGTTCCCCCACTTTGTATTACA 59.341 43.478 0.00 0.00 34.66 2.41
409 410 4.311520 AGGTTCCCCCACTTTGTATTAC 57.688 45.455 0.00 0.00 34.66 1.89
410 411 5.342361 AAAGGTTCCCCCACTTTGTATTA 57.658 39.130 0.00 0.00 33.53 0.98
411 412 3.915346 AAGGTTCCCCCACTTTGTATT 57.085 42.857 0.00 0.00 34.66 1.89
412 413 3.915346 AAAGGTTCCCCCACTTTGTAT 57.085 42.857 0.00 0.00 33.53 2.29
413 414 3.691698 AAAAGGTTCCCCCACTTTGTA 57.308 42.857 0.00 0.00 34.89 2.41
414 415 2.561209 AAAAGGTTCCCCCACTTTGT 57.439 45.000 0.00 0.00 34.89 2.83
415 416 2.769095 TGAAAAAGGTTCCCCCACTTTG 59.231 45.455 0.00 0.00 34.89 2.77
416 417 3.123392 TGAAAAAGGTTCCCCCACTTT 57.877 42.857 0.00 0.00 36.09 2.66
417 418 2.858787 TGAAAAAGGTTCCCCCACTT 57.141 45.000 0.00 0.00 34.66 3.16
418 419 2.858787 TTGAAAAAGGTTCCCCCACT 57.141 45.000 0.00 0.00 34.66 4.00
419 420 2.969262 TGATTGAAAAAGGTTCCCCCAC 59.031 45.455 0.00 0.00 34.66 4.61
420 421 3.336509 TGATTGAAAAAGGTTCCCCCA 57.663 42.857 0.00 0.00 34.66 4.96
421 422 4.041567 ACAATGATTGAAAAAGGTTCCCCC 59.958 41.667 12.80 0.00 0.00 5.40
422 423 5.227569 ACAATGATTGAAAAAGGTTCCCC 57.772 39.130 12.80 0.00 0.00 4.81
423 424 5.861787 CGTACAATGATTGAAAAAGGTTCCC 59.138 40.000 12.80 0.00 0.00 3.97
424 425 6.362283 CACGTACAATGATTGAAAAAGGTTCC 59.638 38.462 12.80 0.00 0.00 3.62
425 426 6.129194 GCACGTACAATGATTGAAAAAGGTTC 60.129 38.462 12.80 0.00 0.00 3.62
426 427 5.689961 GCACGTACAATGATTGAAAAAGGTT 59.310 36.000 12.80 0.00 0.00 3.50
427 428 5.009610 AGCACGTACAATGATTGAAAAAGGT 59.990 36.000 12.80 3.66 0.00 3.50
428 429 5.460646 AGCACGTACAATGATTGAAAAAGG 58.539 37.500 12.80 3.09 0.00 3.11
429 430 6.373779 AGAGCACGTACAATGATTGAAAAAG 58.626 36.000 12.80 2.31 0.00 2.27
430 431 6.312399 AGAGCACGTACAATGATTGAAAAA 57.688 33.333 12.80 0.00 0.00 1.94
431 432 5.940192 AGAGCACGTACAATGATTGAAAA 57.060 34.783 12.80 0.00 0.00 2.29
432 433 6.092122 CCTTAGAGCACGTACAATGATTGAAA 59.908 38.462 12.80 0.00 0.00 2.69
433 434 5.580691 CCTTAGAGCACGTACAATGATTGAA 59.419 40.000 12.80 0.00 0.00 2.69
434 435 5.109210 CCTTAGAGCACGTACAATGATTGA 58.891 41.667 12.80 0.00 0.00 2.57
435 436 4.271049 CCCTTAGAGCACGTACAATGATTG 59.729 45.833 3.16 3.16 0.00 2.67
436 437 4.442706 CCCTTAGAGCACGTACAATGATT 58.557 43.478 0.00 0.00 0.00 2.57
437 438 3.741388 GCCCTTAGAGCACGTACAATGAT 60.741 47.826 0.00 0.00 0.00 2.45
438 439 2.418197 GCCCTTAGAGCACGTACAATGA 60.418 50.000 0.00 0.00 0.00 2.57
439 440 1.933853 GCCCTTAGAGCACGTACAATG 59.066 52.381 0.00 0.00 0.00 2.82
440 441 1.553248 TGCCCTTAGAGCACGTACAAT 59.447 47.619 0.00 0.00 34.69 2.71
441 442 0.970640 TGCCCTTAGAGCACGTACAA 59.029 50.000 0.00 0.00 34.69 2.41
442 443 0.530744 CTGCCCTTAGAGCACGTACA 59.469 55.000 0.00 0.00 36.01 2.90
443 444 0.531200 ACTGCCCTTAGAGCACGTAC 59.469 55.000 0.00 0.00 36.01 3.67
444 445 1.263356 AACTGCCCTTAGAGCACGTA 58.737 50.000 0.00 0.00 36.01 3.57
445 446 0.396811 AAACTGCCCTTAGAGCACGT 59.603 50.000 0.00 0.00 36.01 4.49
446 447 0.798776 CAAACTGCCCTTAGAGCACG 59.201 55.000 0.00 0.00 36.01 5.34
447 448 2.185004 TCAAACTGCCCTTAGAGCAC 57.815 50.000 0.00 0.00 36.01 4.40
448 449 2.553028 CCTTCAAACTGCCCTTAGAGCA 60.553 50.000 0.00 0.00 38.82 4.26
449 450 2.087646 CCTTCAAACTGCCCTTAGAGC 58.912 52.381 0.00 0.00 0.00 4.09
450 451 3.703001 TCCTTCAAACTGCCCTTAGAG 57.297 47.619 0.00 0.00 0.00 2.43
451 452 3.369471 CGATCCTTCAAACTGCCCTTAGA 60.369 47.826 0.00 0.00 0.00 2.10
452 453 2.939103 CGATCCTTCAAACTGCCCTTAG 59.061 50.000 0.00 0.00 0.00 2.18
634 635 1.134699 AGCACATGCATGTACGCTACT 60.135 47.619 32.07 19.95 45.16 2.57
800 813 4.928398 AGCTCAGCTGTCGGATTG 57.072 55.556 14.67 0.00 37.57 2.67
1023 1046 2.163211 GGCAGCAATGGAAGAAGAAGAC 59.837 50.000 0.00 0.00 0.00 3.01
1161 1187 4.035102 GAGAAGGGGTTGGCGGCT 62.035 66.667 11.43 0.00 0.00 5.52
1235 1261 2.922955 TCAATCCATGGAAGGTACCCAA 59.077 45.455 20.67 0.00 37.22 4.12
1236 1262 2.567862 TCAATCCATGGAAGGTACCCA 58.432 47.619 20.67 0.00 38.19 4.51
1237 1263 3.884037 ATCAATCCATGGAAGGTACCC 57.116 47.619 20.67 0.00 0.00 3.69
1255 1281 3.308323 GCAAGAAGAGTGGACGATCAATC 59.692 47.826 0.00 0.00 32.58 2.67
1256 1282 3.055530 AGCAAGAAGAGTGGACGATCAAT 60.056 43.478 0.00 0.00 0.00 2.57
1298 1326 5.163754 CCATCGATCATACTACTCATACGCA 60.164 44.000 0.00 0.00 0.00 5.24
1500 1565 3.726557 TGGAATCAGCCTGTGAAAGAT 57.273 42.857 0.00 0.00 39.19 2.40
1511 1576 7.838771 AATTTTGAATTAGCTTGGAATCAGC 57.161 32.000 0.00 0.00 0.00 4.26
1557 1622 2.713967 GGATGGCTTGCCGCAACAT 61.714 57.895 0.38 5.30 41.67 2.71
1615 1680 2.125793 GCGTACCGTGGGGAGTTC 60.126 66.667 0.00 0.00 36.97 3.01
1707 1776 5.899120 TCTTGAGCTAAGTCGTCTGTAAT 57.101 39.130 0.00 0.00 37.65 1.89
1760 1836 8.987890 TGCATATACACACACATATGTACATTC 58.012 33.333 14.77 0.00 36.72 2.67
1767 1843 4.154737 GGCCTGCATATACACACACATATG 59.845 45.833 0.00 0.00 37.91 1.78
1768 1844 4.202451 TGGCCTGCATATACACACACATAT 60.202 41.667 3.32 0.00 0.00 1.78
1772 1857 1.942657 CTGGCCTGCATATACACACAC 59.057 52.381 3.32 0.00 0.00 3.82
1780 1865 2.039480 CTGGATGTACTGGCCTGCATAT 59.961 50.000 9.95 0.02 0.00 1.78
2371 2472 2.635229 GATGATGGCGGTGCGTCTCT 62.635 60.000 0.00 0.00 30.55 3.10
2382 2483 2.595754 GGAAGGGGCGATGATGGC 60.596 66.667 0.00 0.00 0.00 4.40
2417 2518 4.404394 ACGTCTTTGAAAAACCCAAAGGAT 59.596 37.500 13.51 0.65 46.25 3.24
2451 2552 1.070914 TGGTTGACTCAACATGGCGTA 59.929 47.619 20.94 0.00 45.11 4.42
2452 2553 0.179032 TGGTTGACTCAACATGGCGT 60.179 50.000 20.94 0.00 45.11 5.68
2453 2554 1.135603 CATGGTTGACTCAACATGGCG 60.136 52.381 20.94 3.70 45.11 5.69
2454 2555 1.203052 CCATGGTTGACTCAACATGGC 59.797 52.381 24.83 11.88 45.11 4.40
2455 2556 2.489329 GACCATGGTTGACTCAACATGG 59.511 50.000 29.21 29.21 46.12 3.66
2456 2557 3.415212 AGACCATGGTTGACTCAACATG 58.585 45.455 20.85 19.32 45.11 3.21
2457 2558 3.795688 AGACCATGGTTGACTCAACAT 57.204 42.857 20.85 11.15 45.11 2.71
2477 2578 0.109964 GCAGCGTGCATTTAACCGAA 60.110 50.000 0.00 0.00 44.26 4.30
2572 2673 5.578005 TCACATTCTCGGAAACTACTAGG 57.422 43.478 0.00 0.00 0.00 3.02
2585 2686 3.618594 ACGTACATGCACATCACATTCTC 59.381 43.478 0.00 0.00 0.00 2.87
2586 2687 3.599343 ACGTACATGCACATCACATTCT 58.401 40.909 0.00 0.00 0.00 2.40
2629 2730 4.565028 GGGTCAAGTCAAGTAAACCCCTAG 60.565 50.000 0.00 0.00 40.42 3.02
2630 2731 3.328637 GGGTCAAGTCAAGTAAACCCCTA 59.671 47.826 0.00 0.00 40.42 3.53
2631 2732 2.107726 GGGTCAAGTCAAGTAAACCCCT 59.892 50.000 0.00 0.00 40.42 4.79
2632 2733 2.511659 GGGTCAAGTCAAGTAAACCCC 58.488 52.381 0.00 0.00 40.42 4.95
2707 2808 3.304525 GCTGATTGATATTGCACTGGAGC 60.305 47.826 0.00 0.00 0.00 4.70
2708 2809 3.252701 GGCTGATTGATATTGCACTGGAG 59.747 47.826 0.00 0.00 0.00 3.86
2710 2811 3.220110 AGGCTGATTGATATTGCACTGG 58.780 45.455 0.00 0.00 0.00 4.00
2713 2814 4.337555 ACTTGAGGCTGATTGATATTGCAC 59.662 41.667 0.00 0.00 0.00 4.57
2715 2816 4.792057 GCACTTGAGGCTGATTGATATTGC 60.792 45.833 0.00 0.00 0.00 3.56
2721 2822 1.627329 AGAGCACTTGAGGCTGATTGA 59.373 47.619 0.00 0.00 42.78 2.57
2722 2823 2.008329 GAGAGCACTTGAGGCTGATTG 58.992 52.381 0.00 0.00 42.78 2.67
2724 2825 0.540923 GGAGAGCACTTGAGGCTGAT 59.459 55.000 0.00 0.00 42.78 2.90
2725 2826 1.548357 GGGAGAGCACTTGAGGCTGA 61.548 60.000 0.00 0.00 42.78 4.26
2730 2865 3.118482 ACACATATGGGAGAGCACTTGAG 60.118 47.826 13.12 0.00 0.00 3.02
2740 2875 3.686241 CACTGAACACACACATATGGGAG 59.314 47.826 13.12 6.38 31.57 4.30
2742 2877 3.411446 ACACTGAACACACACATATGGG 58.589 45.455 2.57 2.57 34.29 4.00
2743 2878 5.478407 TCTACACTGAACACACACATATGG 58.522 41.667 7.80 0.00 0.00 2.74
2744 2879 6.401474 GCTTCTACACTGAACACACACATATG 60.401 42.308 0.00 0.00 0.00 1.78
2745 2880 5.639506 GCTTCTACACTGAACACACACATAT 59.360 40.000 0.00 0.00 0.00 1.78
2748 2883 3.194861 GCTTCTACACTGAACACACACA 58.805 45.455 0.00 0.00 0.00 3.72
2749 2884 3.194861 TGCTTCTACACTGAACACACAC 58.805 45.455 0.00 0.00 0.00 3.82
2750 2885 3.535280 TGCTTCTACACTGAACACACA 57.465 42.857 0.00 0.00 0.00 3.72
2751 2886 4.273480 ACAATGCTTCTACACTGAACACAC 59.727 41.667 0.00 0.00 0.00 3.82
2753 2888 5.424121 AACAATGCTTCTACACTGAACAC 57.576 39.130 0.00 0.00 0.00 3.32
2754 2889 6.293407 GCTAAACAATGCTTCTACACTGAACA 60.293 38.462 0.00 0.00 0.00 3.18
2755 2890 6.080406 GCTAAACAATGCTTCTACACTGAAC 58.920 40.000 0.00 0.00 0.00 3.18
2756 2891 5.181245 GGCTAAACAATGCTTCTACACTGAA 59.819 40.000 0.00 0.00 0.00 3.02
2757 2892 4.695455 GGCTAAACAATGCTTCTACACTGA 59.305 41.667 0.00 0.00 0.00 3.41
2758 2893 4.455533 TGGCTAAACAATGCTTCTACACTG 59.544 41.667 0.00 0.00 0.00 3.66
2759 2894 4.455877 GTGGCTAAACAATGCTTCTACACT 59.544 41.667 0.00 0.00 0.00 3.55
2760 2895 4.455877 AGTGGCTAAACAATGCTTCTACAC 59.544 41.667 0.00 0.00 0.00 2.90
2763 2898 6.049955 ACTAGTGGCTAAACAATGCTTCTA 57.950 37.500 0.00 0.00 0.00 2.10
2764 2899 4.911390 ACTAGTGGCTAAACAATGCTTCT 58.089 39.130 0.00 0.00 0.00 2.85
2765 2900 5.875359 ACTACTAGTGGCTAAACAATGCTTC 59.125 40.000 5.39 0.00 0.00 3.86
2766 2901 5.805728 ACTACTAGTGGCTAAACAATGCTT 58.194 37.500 5.39 0.00 0.00 3.91
2767 2902 5.187967 AGACTACTAGTGGCTAAACAATGCT 59.812 40.000 5.39 0.00 0.00 3.79
2768 2903 5.420409 AGACTACTAGTGGCTAAACAATGC 58.580 41.667 5.39 0.00 0.00 3.56
2784 2919 3.737663 CGGAGCTCACGTACTAGACTACT 60.738 52.174 17.19 0.00 0.00 2.57
2785 2920 2.539274 CGGAGCTCACGTACTAGACTAC 59.461 54.545 17.19 0.00 0.00 2.73
2786 2921 2.819115 CGGAGCTCACGTACTAGACTA 58.181 52.381 17.19 0.00 0.00 2.59
2787 2922 1.654317 CGGAGCTCACGTACTAGACT 58.346 55.000 17.19 0.00 0.00 3.24
2802 2937 2.223829 ACATAATCGAGTTGGAGCGGAG 60.224 50.000 0.00 0.00 0.00 4.63
2804 2939 1.860950 CACATAATCGAGTTGGAGCGG 59.139 52.381 0.00 0.00 0.00 5.52
2806 2941 3.262420 ACACACATAATCGAGTTGGAGC 58.738 45.455 0.00 0.00 0.00 4.70
2807 2942 4.804139 GGTACACACATAATCGAGTTGGAG 59.196 45.833 0.00 0.00 0.00 3.86
2809 2944 4.500127 TGGTACACACATAATCGAGTTGG 58.500 43.478 0.00 0.00 0.00 3.77
2825 2960 0.390124 GACACGAACAGGGTGGTACA 59.610 55.000 0.00 0.00 35.98 2.90
2827 3676 0.470456 AGGACACGAACAGGGTGGTA 60.470 55.000 0.00 0.00 35.98 3.25
2830 3679 1.004918 GGAGGACACGAACAGGGTG 60.005 63.158 0.00 0.00 35.98 4.61
2832 3681 0.900647 AGAGGAGGACACGAACAGGG 60.901 60.000 0.00 0.00 0.00 4.45
2833 3682 0.244994 CAGAGGAGGACACGAACAGG 59.755 60.000 0.00 0.00 0.00 4.00
2836 3685 1.079750 GGCAGAGGAGGACACGAAC 60.080 63.158 0.00 0.00 0.00 3.95
2840 3689 1.908340 ATGCTGGCAGAGGAGGACAC 61.908 60.000 20.86 0.00 0.00 3.67
2841 3690 0.325577 TATGCTGGCAGAGGAGGACA 60.326 55.000 20.86 4.80 0.00 4.02
2842 3691 0.392336 CTATGCTGGCAGAGGAGGAC 59.608 60.000 20.86 0.00 32.20 3.85
2844 3693 1.071128 GCTATGCTGGCAGAGGAGG 59.929 63.158 20.86 4.68 35.96 4.30
2845 3694 1.273048 CTAGCTATGCTGGCAGAGGAG 59.727 57.143 20.86 11.87 40.10 3.69
2849 3698 1.780503 TGTCTAGCTATGCTGGCAGA 58.219 50.000 20.86 3.68 40.10 4.26
2852 3701 1.345741 TGGATGTCTAGCTATGCTGGC 59.654 52.381 1.96 0.00 40.10 4.85
2862 3711 4.991153 TGAACTACTGCTGGATGTCTAG 57.009 45.455 0.00 0.00 0.00 2.43
2866 3715 6.780031 ACTATAGATGAACTACTGCTGGATGT 59.220 38.462 6.78 0.00 33.62 3.06
2867 3716 7.176515 AGACTATAGATGAACTACTGCTGGATG 59.823 40.741 6.78 0.00 33.62 3.51
2868 3717 7.237982 AGACTATAGATGAACTACTGCTGGAT 58.762 38.462 6.78 0.00 33.62 3.41
2870 3719 6.892658 AGACTATAGATGAACTACTGCTGG 57.107 41.667 6.78 0.00 33.62 4.85
2877 3726 9.463902 GCCCAACTATAGACTATAGATGAACTA 57.536 37.037 28.41 2.96 41.42 2.24
2878 3727 8.174085 AGCCCAACTATAGACTATAGATGAACT 58.826 37.037 28.41 23.06 41.42 3.01
2879 3728 8.356000 AGCCCAACTATAGACTATAGATGAAC 57.644 38.462 28.41 21.85 41.42 3.18
2881 3730 9.463902 GTTAGCCCAACTATAGACTATAGATGA 57.536 37.037 28.41 14.19 41.42 2.92
2882 3731 9.244292 TGTTAGCCCAACTATAGACTATAGATG 57.756 37.037 28.61 25.82 40.43 2.90
2883 3732 9.245481 GTGTTAGCCCAACTATAGACTATAGAT 57.755 37.037 28.61 18.25 40.43 1.98
2884 3733 7.389884 CGTGTTAGCCCAACTATAGACTATAGA 59.610 40.741 28.61 8.19 40.43 1.98
2885 3734 7.528307 CGTGTTAGCCCAACTATAGACTATAG 58.472 42.308 22.71 22.71 42.97 1.31
2887 3736 5.278858 GCGTGTTAGCCCAACTATAGACTAT 60.279 44.000 6.78 0.00 38.05 2.12
2888 3737 4.037208 GCGTGTTAGCCCAACTATAGACTA 59.963 45.833 6.78 0.00 38.05 2.59
2889 3738 3.181478 GCGTGTTAGCCCAACTATAGACT 60.181 47.826 6.78 0.00 38.05 3.24
2890 3739 3.121544 GCGTGTTAGCCCAACTATAGAC 58.878 50.000 6.78 0.00 38.05 2.59
2891 3740 3.447918 GCGTGTTAGCCCAACTATAGA 57.552 47.619 6.78 0.00 38.05 1.98
2902 3751 2.154427 GACGTGTGTGGCGTGTTAGC 62.154 60.000 0.00 0.00 43.04 3.09
2905 3754 2.125472 TGACGTGTGTGGCGTGTT 60.125 55.556 0.00 0.00 43.04 3.32
2906 3755 2.888534 GTGACGTGTGTGGCGTGT 60.889 61.111 0.00 0.00 43.04 4.49
2907 3756 2.360091 CTTGTGACGTGTGTGGCGTG 62.360 60.000 0.00 0.00 43.04 5.34
2936 3796 2.380410 ATCTCGAAGCGCGCGTTTT 61.380 52.632 31.72 24.91 40.61 2.43
2941 3801 0.314339 GTAAACATCTCGAAGCGCGC 60.314 55.000 26.66 26.66 40.61 6.86
2949 3809 2.373269 CTCTACGGCGTAAACATCTCG 58.627 52.381 21.32 6.77 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.