Multiple sequence alignment - TraesCS3D01G082600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G082600 chr3D 100.000 3239 0 0 1 3239 41785384 41782146 0.000000e+00 5982
1 TraesCS3D01G082600 chr3D 100.000 474 0 0 3505 3978 41781880 41781407 0.000000e+00 876
2 TraesCS3D01G082600 chr3D 88.820 161 17 1 3628 3787 293809876 293809716 3.140000e-46 196
3 TraesCS3D01G082600 chr3A 90.638 2115 145 18 1 2088 53737671 53739759 0.000000e+00 2760
4 TraesCS3D01G082600 chr3A 87.349 1075 83 18 2086 3133 53740483 53741531 0.000000e+00 1182
5 TraesCS3D01G082600 chr3B 94.919 1299 49 10 845 2141 66170772 66172055 0.000000e+00 2017
6 TraesCS3D01G082600 chr3B 90.256 975 84 6 2238 3206 66172809 66173778 0.000000e+00 1264
7 TraesCS3D01G082600 chr1D 88.545 1100 97 17 847 1928 250922369 250923457 0.000000e+00 1306
8 TraesCS3D01G082600 chr1D 86.210 1095 117 21 849 1927 29692862 29691786 0.000000e+00 1155
9 TraesCS3D01G082600 chr1D 88.098 941 105 2 984 1924 30025660 30026593 0.000000e+00 1110
10 TraesCS3D01G082600 chr1D 82.526 681 117 2 2313 2992 8391193 8391872 7.360000e-167 597
11 TraesCS3D01G082600 chr1D 82.622 633 110 0 2300 2932 29690174 29689542 9.650000e-156 560
12 TraesCS3D01G082600 chr1B 88.455 1100 98 17 847 1928 363480762 363479674 0.000000e+00 1301
13 TraesCS3D01G082600 chr1B 84.105 648 103 0 2313 2960 363477963 363477316 9.380000e-176 627
14 TraesCS3D01G082600 chr1A 88.273 1100 100 17 847 1928 321110394 321111482 0.000000e+00 1290
15 TraesCS3D01G082600 chr1A 89.065 695 69 4 1 691 389876022 389876713 0.000000e+00 856
16 TraesCS3D01G082600 chr1A 82.845 682 111 4 2313 2988 321113817 321114498 1.220000e-169 606
17 TraesCS3D01G082600 chr2D 86.949 1088 105 19 853 1924 589318672 589317606 0.000000e+00 1188
18 TraesCS3D01G082600 chr2D 85.382 773 96 11 1 762 397896987 397897753 0.000000e+00 785
19 TraesCS3D01G082600 chr2D 82.055 691 120 3 2294 2983 589316783 589316096 1.590000e-163 586
20 TraesCS3D01G082600 chr2D 89.241 158 16 1 3628 3785 373883593 373883437 3.140000e-46 196
21 TraesCS3D01G082600 chr2A 85.845 1095 117 20 847 1924 723652601 723651528 0.000000e+00 1129
22 TraesCS3D01G082600 chr2A 82.489 691 117 3 2294 2983 723650489 723649802 1.580000e-168 603
23 TraesCS3D01G082600 chr2A 89.412 170 17 1 3624 3792 703708427 703708258 3.110000e-51 213
24 TraesCS3D01G082600 chr2B 85.885 1091 116 23 847 1924 712960310 712959245 0.000000e+00 1127
25 TraesCS3D01G082600 chr2B 84.604 682 103 1 2302 2983 712959142 712958463 0.000000e+00 676
26 TraesCS3D01G082600 chr5D 87.403 770 80 12 1 761 468355257 468354496 0.000000e+00 869
27 TraesCS3D01G082600 chr5D 90.625 160 15 0 3628 3787 59947841 59947682 3.110000e-51 213
28 TraesCS3D01G082600 chr6D 86.675 773 87 9 1 762 350559359 350558592 0.000000e+00 843
29 TraesCS3D01G082600 chr4B 86.546 773 89 8 1 762 59242505 59241737 0.000000e+00 837
30 TraesCS3D01G082600 chr7B 86.494 770 93 7 1 762 429278344 429279110 0.000000e+00 835
31 TraesCS3D01G082600 chr7B 87.952 166 19 1 3628 3792 443741556 443741391 1.130000e-45 195
32 TraesCS3D01G082600 chr5B 86.082 776 93 9 1 768 575067022 575066254 0.000000e+00 821
33 TraesCS3D01G082600 chr5B 91.824 159 13 0 3629 3787 70793384 70793542 5.170000e-54 222
34 TraesCS3D01G082600 chr5B 88.235 170 19 1 3628 3797 472754841 472754673 6.740000e-48 202
35 TraesCS3D01G082600 chr5A 85.992 771 94 10 1 762 571777008 571777773 0.000000e+00 813
36 TraesCS3D01G082600 chr4D 85.826 769 96 9 1 762 303048656 303049418 0.000000e+00 804
37 TraesCS3D01G082600 chr7D 88.889 162 18 0 3628 3789 634757239 634757400 2.420000e-47 200
38 TraesCS3D01G082600 chr7A 88.820 161 17 1 3628 3787 156113388 156113548 3.140000e-46 196


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G082600 chr3D 41781407 41785384 3977 True 3429.0 5982 100.0000 1 3978 2 chr3D.!!$R2 3977
1 TraesCS3D01G082600 chr3A 53737671 53741531 3860 False 1971.0 2760 88.9935 1 3133 2 chr3A.!!$F1 3132
2 TraesCS3D01G082600 chr3B 66170772 66173778 3006 False 1640.5 2017 92.5875 845 3206 2 chr3B.!!$F1 2361
3 TraesCS3D01G082600 chr1D 250922369 250923457 1088 False 1306.0 1306 88.5450 847 1928 1 chr1D.!!$F3 1081
4 TraesCS3D01G082600 chr1D 30025660 30026593 933 False 1110.0 1110 88.0980 984 1924 1 chr1D.!!$F2 940
5 TraesCS3D01G082600 chr1D 29689542 29692862 3320 True 857.5 1155 84.4160 849 2932 2 chr1D.!!$R1 2083
6 TraesCS3D01G082600 chr1D 8391193 8391872 679 False 597.0 597 82.5260 2313 2992 1 chr1D.!!$F1 679
7 TraesCS3D01G082600 chr1B 363477316 363480762 3446 True 964.0 1301 86.2800 847 2960 2 chr1B.!!$R1 2113
8 TraesCS3D01G082600 chr1A 321110394 321114498 4104 False 948.0 1290 85.5590 847 2988 2 chr1A.!!$F2 2141
9 TraesCS3D01G082600 chr1A 389876022 389876713 691 False 856.0 856 89.0650 1 691 1 chr1A.!!$F1 690
10 TraesCS3D01G082600 chr2D 589316096 589318672 2576 True 887.0 1188 84.5020 853 2983 2 chr2D.!!$R2 2130
11 TraesCS3D01G082600 chr2D 397896987 397897753 766 False 785.0 785 85.3820 1 762 1 chr2D.!!$F1 761
12 TraesCS3D01G082600 chr2A 723649802 723652601 2799 True 866.0 1129 84.1670 847 2983 2 chr2A.!!$R2 2136
13 TraesCS3D01G082600 chr2B 712958463 712960310 1847 True 901.5 1127 85.2445 847 2983 2 chr2B.!!$R1 2136
14 TraesCS3D01G082600 chr5D 468354496 468355257 761 True 869.0 869 87.4030 1 761 1 chr5D.!!$R2 760
15 TraesCS3D01G082600 chr6D 350558592 350559359 767 True 843.0 843 86.6750 1 762 1 chr6D.!!$R1 761
16 TraesCS3D01G082600 chr4B 59241737 59242505 768 True 837.0 837 86.5460 1 762 1 chr4B.!!$R1 761
17 TraesCS3D01G082600 chr7B 429278344 429279110 766 False 835.0 835 86.4940 1 762 1 chr7B.!!$F1 761
18 TraesCS3D01G082600 chr5B 575066254 575067022 768 True 821.0 821 86.0820 1 768 1 chr5B.!!$R2 767
19 TraesCS3D01G082600 chr5A 571777008 571777773 765 False 813.0 813 85.9920 1 762 1 chr5A.!!$F1 761
20 TraesCS3D01G082600 chr4D 303048656 303049418 762 False 804.0 804 85.8260 1 762 1 chr4D.!!$F1 761

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
185 200 0.251916 CGGGTAGGAAGGATGTGCAA 59.748 55.000 0.0 0.0 0.00 4.08 F
1063 1112 0.465460 GGTGGTCTTTGTGGTGCTGA 60.465 55.000 0.0 0.0 0.00 4.26 F
1843 1913 1.078848 CCTGAGGCGAGAACCAAGG 60.079 63.158 0.0 0.0 31.65 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1948 2081 3.501828 TGGCGCATATGGCAGTAAATAAG 59.498 43.478 10.83 0.0 45.17 1.73 R
2867 6790 0.037326 GTGAGGCCGAAGACATCACA 60.037 55.000 12.74 0.0 39.97 3.58 R
2984 6913 0.096976 CAAAGACAATAGGTGCGCGG 59.903 55.000 8.83 0.0 0.00 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 2.413765 CGTCAACGACCGAGAGTACAAT 60.414 50.000 0.00 0.00 43.02 2.71
183 198 1.523938 GCGGGTAGGAAGGATGTGC 60.524 63.158 0.00 0.00 0.00 4.57
185 200 0.251916 CGGGTAGGAAGGATGTGCAA 59.748 55.000 0.00 0.00 0.00 4.08
247 262 2.342650 GCGGTGCAATGATGTGGGT 61.343 57.895 0.00 0.00 0.00 4.51
345 360 5.046950 GGTGTAGCCCAAACCAATGATTTTA 60.047 40.000 0.00 0.00 33.94 1.52
350 365 4.142924 GCCCAAACCAATGATTTTAAAGCG 60.143 41.667 0.00 0.00 0.00 4.68
351 366 4.142924 CCCAAACCAATGATTTTAAAGCGC 60.143 41.667 0.00 0.00 0.00 5.92
352 367 4.690280 CCAAACCAATGATTTTAAAGCGCT 59.310 37.500 2.64 2.64 0.00 5.92
353 368 5.389725 CCAAACCAATGATTTTAAAGCGCTG 60.390 40.000 12.58 0.00 0.00 5.18
440 456 5.475273 TGCATCAGAATTTTCGAGATCAC 57.525 39.130 0.00 0.00 0.00 3.06
475 491 3.875727 CAGCTACTCAATGATCTTGTGGG 59.124 47.826 0.00 0.00 0.00 4.61
576 592 5.601583 TCTATGCTCGGTACCAACATTTA 57.398 39.130 13.54 1.47 0.00 1.40
581 597 6.854496 TGCTCGGTACCAACATTTATTATC 57.146 37.500 13.54 0.00 0.00 1.75
595 614 8.806177 ACATTTATTATCTACGTGCGACATTA 57.194 30.769 0.00 0.00 0.00 1.90
600 619 9.949174 TTATTATCTACGTGCGACATTAACTTA 57.051 29.630 0.00 0.00 0.00 2.24
660 679 9.347240 AGAATCCGAATTTGAGATATGTGAATT 57.653 29.630 0.00 0.00 0.00 2.17
665 684 8.615211 CCGAATTTGAGATATGTGAATTTCAGA 58.385 33.333 0.00 0.00 0.00 3.27
666 685 9.647679 CGAATTTGAGATATGTGAATTTCAGAG 57.352 33.333 0.00 0.00 0.00 3.35
667 686 9.448294 GAATTTGAGATATGTGAATTTCAGAGC 57.552 33.333 0.00 0.00 0.00 4.09
668 687 7.926674 TTTGAGATATGTGAATTTCAGAGCA 57.073 32.000 0.00 0.00 0.00 4.26
679 699 8.469200 TGTGAATTTCAGAGCAAAATATAAGGG 58.531 33.333 0.00 0.00 0.00 3.95
681 701 7.342799 TGAATTTCAGAGCAAAATATAAGGGCT 59.657 33.333 0.00 0.00 37.56 5.19
685 705 4.733972 GAGCAAAATATAAGGGCTCGTC 57.266 45.455 0.00 0.00 41.18 4.20
686 706 3.477530 AGCAAAATATAAGGGCTCGTCC 58.522 45.455 0.00 0.00 0.00 4.79
688 708 2.806244 CAAAATATAAGGGCTCGTCCGG 59.194 50.000 0.00 0.00 34.94 5.14
691 711 1.542492 TATAAGGGCTCGTCCGGATC 58.458 55.000 7.81 0.00 34.94 3.36
695 715 4.267503 GGCTCGTCCGGATCCGTC 62.268 72.222 31.22 21.85 37.81 4.79
738 760 1.455587 GGACGTACGGGGTGGGATA 60.456 63.158 21.06 0.00 0.00 2.59
750 772 1.148273 TGGGATATGCAAGTCCGGC 59.852 57.895 12.89 0.00 35.28 6.13
753 775 1.510480 GGATATGCAAGTCCGGCTGC 61.510 60.000 14.07 14.07 0.00 5.25
762 784 3.393106 TCCGGCTGCAGATGCTCA 61.393 61.111 20.43 0.00 42.66 4.26
763 785 2.437180 CCGGCTGCAGATGCTCAA 60.437 61.111 20.43 0.00 42.66 3.02
778 802 2.181205 GCTCAAATCTCACTCGTCTCG 58.819 52.381 0.00 0.00 0.00 4.04
790 814 2.809010 GTCTCGCCTAGTGCTCCC 59.191 66.667 2.39 0.00 38.05 4.30
822 846 2.162681 ACCCTCCATCGCAAAGAAAAG 58.837 47.619 0.00 0.00 0.00 2.27
825 849 3.255642 CCCTCCATCGCAAAGAAAAGAAA 59.744 43.478 0.00 0.00 0.00 2.52
826 850 4.261994 CCCTCCATCGCAAAGAAAAGAAAA 60.262 41.667 0.00 0.00 0.00 2.29
827 851 5.288804 CCTCCATCGCAAAGAAAAGAAAAA 58.711 37.500 0.00 0.00 0.00 1.94
828 852 5.403466 CCTCCATCGCAAAGAAAAGAAAAAG 59.597 40.000 0.00 0.00 0.00 2.27
829 853 5.288804 TCCATCGCAAAGAAAAGAAAAAGG 58.711 37.500 0.00 0.00 0.00 3.11
830 854 5.049828 CCATCGCAAAGAAAAGAAAAAGGT 58.950 37.500 0.00 0.00 0.00 3.50
837 861 9.843874 CGCAAAGAAAAGAAAAAGGTTATAAAC 57.156 29.630 0.00 0.00 0.00 2.01
940 986 4.465632 ACCCCAAGAAGAAAACAACAAC 57.534 40.909 0.00 0.00 0.00 3.32
969 1018 2.163815 GCTTCTAGTTCGAGTACCAGCA 59.836 50.000 0.00 0.00 0.00 4.41
971 1020 4.678309 GCTTCTAGTTCGAGTACCAGCAAT 60.678 45.833 0.00 0.00 0.00 3.56
972 1021 4.371855 TCTAGTTCGAGTACCAGCAATG 57.628 45.455 0.00 0.00 0.00 2.82
974 1023 1.623811 AGTTCGAGTACCAGCAATGGT 59.376 47.619 5.12 5.12 45.46 3.55
975 1024 1.732259 GTTCGAGTACCAGCAATGGTG 59.268 52.381 10.17 5.31 43.03 4.17
982 1031 2.744062 CCAGCAATGGTGGGTTTGA 58.256 52.632 22.75 0.00 46.19 2.69
1053 1102 1.597027 CGTTGCCTCGGTGGTCTTT 60.597 57.895 0.00 0.00 38.35 2.52
1063 1112 0.465460 GGTGGTCTTTGTGGTGCTGA 60.465 55.000 0.00 0.00 0.00 4.26
1843 1913 1.078848 CCTGAGGCGAGAACCAAGG 60.079 63.158 0.00 0.00 31.65 3.61
1948 2081 2.418334 GGTAGATCCAAACCTCCGTCAC 60.418 54.545 2.91 0.00 35.97 3.67
2067 2266 6.455646 GCCGTGTAGAATTTCTGTGTTAGATG 60.456 42.308 9.22 0.00 34.80 2.90
2113 3156 1.139058 ACATAGGAATGGACCGAGTGC 59.861 52.381 0.00 0.00 37.43 4.40
2404 6327 2.105128 CCTGATGACCTCCGACGC 59.895 66.667 0.00 0.00 0.00 5.19
2569 6492 2.126228 GATTGTGTCGTCGGCGGA 60.126 61.111 10.62 0.00 38.89 5.54
2887 6810 0.037326 GTGATGTCTTCGGCCTCACA 60.037 55.000 12.74 5.04 36.94 3.58
2900 6823 1.069765 CTCACAGTTCCACGTGCCT 59.930 57.895 10.91 2.16 33.03 4.75
2961 6890 4.338012 TCTTTGGTTGCTGATGATGATGT 58.662 39.130 0.00 0.00 0.00 3.06
2984 6913 3.414272 GCCAGGCGTGATGTCATC 58.586 61.111 8.24 5.83 0.00 2.92
3042 6971 2.430694 GTTTGGTGGGTTTCTCTTTGCT 59.569 45.455 0.00 0.00 0.00 3.91
3047 6976 4.119862 GGTGGGTTTCTCTTTGCTTTTTC 58.880 43.478 0.00 0.00 0.00 2.29
3050 6979 5.520288 GTGGGTTTCTCTTTGCTTTTTCTTC 59.480 40.000 0.00 0.00 0.00 2.87
3051 6980 5.422012 TGGGTTTCTCTTTGCTTTTTCTTCT 59.578 36.000 0.00 0.00 0.00 2.85
3052 6981 6.070824 TGGGTTTCTCTTTGCTTTTTCTTCTT 60.071 34.615 0.00 0.00 0.00 2.52
3053 6982 7.123547 TGGGTTTCTCTTTGCTTTTTCTTCTTA 59.876 33.333 0.00 0.00 0.00 2.10
3059 6988 9.956720 TCTCTTTGCTTTTTCTTCTTATTTCTG 57.043 29.630 0.00 0.00 0.00 3.02
3089 7018 8.471609 TCTGATACTACGGAACACAATAATTGA 58.528 33.333 0.00 0.00 0.00 2.57
3112 7041 8.306313 TGAATCTTCTATGCTTAGGTTACAGA 57.694 34.615 6.78 2.61 0.00 3.41
3116 7045 8.818622 TCTTCTATGCTTAGGTTACAGAAGTA 57.181 34.615 6.78 0.00 38.92 2.24
3126 7055 4.159693 AGGTTACAGAAGTATGATGCGTGA 59.840 41.667 0.00 0.00 0.00 4.35
3133 7062 6.477033 ACAGAAGTATGATGCGTGACTATTTC 59.523 38.462 0.00 0.00 0.00 2.17
3134 7063 6.476706 CAGAAGTATGATGCGTGACTATTTCA 59.523 38.462 0.00 0.00 0.00 2.69
3143 7076 8.925700 TGATGCGTGACTATTTCATATATTGTC 58.074 33.333 0.00 0.00 36.32 3.18
3154 7087 4.985538 TCATATATTGTCTTGGGAAGGGC 58.014 43.478 0.00 0.00 0.00 5.19
3155 7088 4.415179 TCATATATTGTCTTGGGAAGGGCA 59.585 41.667 0.00 0.00 0.00 5.36
3157 7090 1.632589 ATTGTCTTGGGAAGGGCAAC 58.367 50.000 0.00 0.00 30.88 4.17
3158 7091 0.260230 TTGTCTTGGGAAGGGCAACA 59.740 50.000 0.00 0.00 39.74 3.33
3159 7092 0.260230 TGTCTTGGGAAGGGCAACAA 59.740 50.000 0.00 0.00 39.74 2.83
3160 7093 0.673985 GTCTTGGGAAGGGCAACAAC 59.326 55.000 0.00 0.00 39.74 3.32
3161 7094 0.260230 TCTTGGGAAGGGCAACAACA 59.740 50.000 0.00 0.00 39.74 3.33
3162 7095 0.389025 CTTGGGAAGGGCAACAACAC 59.611 55.000 0.00 0.00 39.74 3.32
3163 7096 0.324738 TTGGGAAGGGCAACAACACA 60.325 50.000 0.00 0.00 39.74 3.72
3164 7097 0.105760 TGGGAAGGGCAACAACACAT 60.106 50.000 0.00 0.00 39.74 3.21
3165 7098 0.318120 GGGAAGGGCAACAACACATG 59.682 55.000 0.00 0.00 39.74 3.21
3166 7099 1.327303 GGAAGGGCAACAACACATGA 58.673 50.000 0.00 0.00 39.74 3.07
3167 7100 1.895131 GGAAGGGCAACAACACATGAT 59.105 47.619 0.00 0.00 39.74 2.45
3176 7110 0.179181 CAACACATGATGCACGCTCC 60.179 55.000 0.00 0.00 0.00 4.70
3177 7111 0.321919 AACACATGATGCACGCTCCT 60.322 50.000 0.00 0.00 0.00 3.69
3180 7114 2.107750 ATGATGCACGCTCCTCCG 59.892 61.111 0.00 0.00 0.00 4.63
3208 7142 0.918619 CGTATTTCGGTGGTAGTGCG 59.081 55.000 0.00 0.00 35.71 5.34
3209 7143 0.648958 GTATTTCGGTGGTAGTGCGC 59.351 55.000 0.00 0.00 0.00 6.09
3210 7144 0.802994 TATTTCGGTGGTAGTGCGCG 60.803 55.000 0.00 0.00 0.00 6.86
3211 7145 2.775032 ATTTCGGTGGTAGTGCGCGT 62.775 55.000 8.43 0.00 0.00 6.01
3212 7146 2.974935 TTTCGGTGGTAGTGCGCGTT 62.975 55.000 8.43 0.00 0.00 4.84
3213 7147 2.974935 TTCGGTGGTAGTGCGCGTTT 62.975 55.000 8.43 0.00 0.00 3.60
3214 7148 2.858158 GGTGGTAGTGCGCGTTTC 59.142 61.111 8.43 0.00 0.00 2.78
3215 7149 1.957186 GGTGGTAGTGCGCGTTTCA 60.957 57.895 8.43 0.00 0.00 2.69
3216 7150 1.296056 GGTGGTAGTGCGCGTTTCAT 61.296 55.000 8.43 0.00 0.00 2.57
3217 7151 0.179225 GTGGTAGTGCGCGTTTCATG 60.179 55.000 8.43 0.00 0.00 3.07
3218 7152 0.601576 TGGTAGTGCGCGTTTCATGT 60.602 50.000 8.43 0.00 0.00 3.21
3219 7153 0.094730 GGTAGTGCGCGTTTCATGTC 59.905 55.000 8.43 0.00 0.00 3.06
3220 7154 0.787787 GTAGTGCGCGTTTCATGTCA 59.212 50.000 8.43 0.00 0.00 3.58
3221 7155 1.393539 GTAGTGCGCGTTTCATGTCAT 59.606 47.619 8.43 0.00 0.00 3.06
3222 7156 0.443869 AGTGCGCGTTTCATGTCATC 59.556 50.000 8.43 0.00 0.00 2.92
3223 7157 0.853224 GTGCGCGTTTCATGTCATCG 60.853 55.000 8.43 0.00 0.00 3.84
3224 7158 1.288419 TGCGCGTTTCATGTCATCGT 61.288 50.000 8.43 0.00 0.00 3.73
3225 7159 0.584054 GCGCGTTTCATGTCATCGTC 60.584 55.000 8.43 0.00 0.00 4.20
3226 7160 0.713329 CGCGTTTCATGTCATCGTCA 59.287 50.000 0.00 0.00 0.00 4.35
3227 7161 1.125930 CGCGTTTCATGTCATCGTCAA 59.874 47.619 0.00 0.00 0.00 3.18
3228 7162 2.410902 CGCGTTTCATGTCATCGTCAAA 60.411 45.455 0.00 0.00 0.00 2.69
3229 7163 3.155998 GCGTTTCATGTCATCGTCAAAG 58.844 45.455 0.00 0.00 0.00 2.77
3230 7164 3.120683 GCGTTTCATGTCATCGTCAAAGA 60.121 43.478 0.00 0.00 0.00 2.52
3231 7165 4.632023 CGTTTCATGTCATCGTCAAAGAG 58.368 43.478 0.00 0.00 0.00 2.85
3232 7166 4.150627 CGTTTCATGTCATCGTCAAAGAGT 59.849 41.667 0.00 0.00 0.00 3.24
3233 7167 5.612865 GTTTCATGTCATCGTCAAAGAGTC 58.387 41.667 0.00 0.00 0.00 3.36
3234 7168 4.790765 TCATGTCATCGTCAAAGAGTCT 57.209 40.909 0.00 0.00 0.00 3.24
3235 7169 5.897377 TCATGTCATCGTCAAAGAGTCTA 57.103 39.130 0.00 0.00 0.00 2.59
3236 7170 5.884771 TCATGTCATCGTCAAAGAGTCTAG 58.115 41.667 0.00 0.00 0.00 2.43
3237 7171 4.703645 TGTCATCGTCAAAGAGTCTAGG 57.296 45.455 0.00 0.00 0.00 3.02
3238 7172 3.444034 TGTCATCGTCAAAGAGTCTAGGG 59.556 47.826 0.00 0.00 0.00 3.53
3541 7475 8.531622 CAATTATGCAACAACAATTAGGACAA 57.468 30.769 0.00 0.00 0.00 3.18
3542 7476 8.434661 CAATTATGCAACAACAATTAGGACAAC 58.565 33.333 0.00 0.00 0.00 3.32
3543 7477 4.314740 TGCAACAACAATTAGGACAACC 57.685 40.909 0.00 0.00 0.00 3.77
3544 7478 3.068873 TGCAACAACAATTAGGACAACCC 59.931 43.478 0.00 0.00 36.73 4.11
3545 7479 3.068873 GCAACAACAATTAGGACAACCCA 59.931 43.478 0.00 0.00 37.41 4.51
3546 7480 4.616953 CAACAACAATTAGGACAACCCAC 58.383 43.478 0.00 0.00 37.41 4.61
3547 7481 4.178956 ACAACAATTAGGACAACCCACT 57.821 40.909 0.00 0.00 37.41 4.00
3548 7482 5.313280 ACAACAATTAGGACAACCCACTA 57.687 39.130 0.00 0.00 37.41 2.74
3549 7483 5.887754 ACAACAATTAGGACAACCCACTAT 58.112 37.500 0.00 0.00 37.41 2.12
3550 7484 7.023171 ACAACAATTAGGACAACCCACTATA 57.977 36.000 0.00 0.00 37.41 1.31
3551 7485 7.110155 ACAACAATTAGGACAACCCACTATAG 58.890 38.462 0.00 0.00 37.41 1.31
3552 7486 5.681639 ACAATTAGGACAACCCACTATAGC 58.318 41.667 0.00 0.00 37.41 2.97
3553 7487 5.190925 ACAATTAGGACAACCCACTATAGCA 59.809 40.000 0.00 0.00 37.41 3.49
3554 7488 5.968676 ATTAGGACAACCCACTATAGCAA 57.031 39.130 0.00 0.00 37.41 3.91
3555 7489 5.968676 TTAGGACAACCCACTATAGCAAT 57.031 39.130 0.00 0.00 37.41 3.56
3556 7490 7.626999 ATTAGGACAACCCACTATAGCAATA 57.373 36.000 0.00 0.00 37.41 1.90
3557 7491 5.552870 AGGACAACCCACTATAGCAATAG 57.447 43.478 0.00 0.00 38.01 1.73
3558 7492 5.216622 AGGACAACCCACTATAGCAATAGA 58.783 41.667 0.00 0.00 36.22 1.98
3559 7493 5.305644 AGGACAACCCACTATAGCAATAGAG 59.694 44.000 0.00 0.00 36.22 2.43
3560 7494 5.304614 GGACAACCCACTATAGCAATAGAGA 59.695 44.000 0.00 0.00 38.79 3.10
3561 7495 6.163135 ACAACCCACTATAGCAATAGAGAC 57.837 41.667 0.00 0.00 37.84 3.36
3562 7496 5.661312 ACAACCCACTATAGCAATAGAGACA 59.339 40.000 0.00 0.00 37.84 3.41
3563 7497 6.327626 ACAACCCACTATAGCAATAGAGACAT 59.672 38.462 0.00 0.00 37.84 3.06
3564 7498 6.352016 ACCCACTATAGCAATAGAGACATG 57.648 41.667 0.00 0.00 37.84 3.21
3565 7499 5.174395 CCCACTATAGCAATAGAGACATGC 58.826 45.833 0.00 0.00 37.84 4.06
3611 7545 7.506328 TTTTACTTTCTAGCTGGTTTTCTCC 57.494 36.000 0.00 0.00 0.00 3.71
3612 7546 4.022413 ACTTTCTAGCTGGTTTTCTCCC 57.978 45.455 0.00 0.00 0.00 4.30
3613 7547 3.394606 ACTTTCTAGCTGGTTTTCTCCCA 59.605 43.478 0.00 0.00 0.00 4.37
3614 7548 4.141251 ACTTTCTAGCTGGTTTTCTCCCAA 60.141 41.667 0.00 0.00 0.00 4.12
3615 7549 3.703001 TCTAGCTGGTTTTCTCCCAAG 57.297 47.619 0.00 0.00 0.00 3.61
3616 7550 3.248024 TCTAGCTGGTTTTCTCCCAAGA 58.752 45.455 0.00 0.00 0.00 3.02
3617 7551 3.650942 TCTAGCTGGTTTTCTCCCAAGAA 59.349 43.478 0.00 0.00 39.78 2.52
3618 7552 2.587522 AGCTGGTTTTCTCCCAAGAAC 58.412 47.619 0.00 0.00 41.23 3.01
3619 7553 2.091885 AGCTGGTTTTCTCCCAAGAACA 60.092 45.455 0.00 0.00 41.23 3.18
3620 7554 2.893489 GCTGGTTTTCTCCCAAGAACAT 59.107 45.455 0.00 0.00 41.23 2.71
3621 7555 3.057245 GCTGGTTTTCTCCCAAGAACATC 60.057 47.826 0.00 0.00 41.23 3.06
3622 7556 3.146066 TGGTTTTCTCCCAAGAACATCG 58.854 45.455 0.00 0.00 41.23 3.84
3623 7557 3.181449 TGGTTTTCTCCCAAGAACATCGA 60.181 43.478 0.00 0.00 41.23 3.59
3624 7558 3.188667 GGTTTTCTCCCAAGAACATCGAC 59.811 47.826 0.00 0.00 41.23 4.20
3625 7559 4.065789 GTTTTCTCCCAAGAACATCGACT 58.934 43.478 0.00 0.00 41.23 4.18
3626 7560 3.319137 TTCTCCCAAGAACATCGACTG 57.681 47.619 0.00 0.00 36.59 3.51
3627 7561 1.066858 TCTCCCAAGAACATCGACTGC 60.067 52.381 0.00 0.00 0.00 4.40
3628 7562 0.976641 TCCCAAGAACATCGACTGCT 59.023 50.000 0.00 0.00 0.00 4.24
3629 7563 1.066858 TCCCAAGAACATCGACTGCTC 60.067 52.381 0.00 0.00 0.00 4.26
3630 7564 1.363744 CCAAGAACATCGACTGCTCC 58.636 55.000 0.00 0.00 0.00 4.70
3631 7565 1.363744 CAAGAACATCGACTGCTCCC 58.636 55.000 0.00 0.00 0.00 4.30
3632 7566 1.066573 CAAGAACATCGACTGCTCCCT 60.067 52.381 0.00 0.00 0.00 4.20
3633 7567 0.820871 AGAACATCGACTGCTCCCTC 59.179 55.000 0.00 0.00 0.00 4.30
3634 7568 0.179097 GAACATCGACTGCTCCCTCC 60.179 60.000 0.00 0.00 0.00 4.30
3635 7569 0.616111 AACATCGACTGCTCCCTCCT 60.616 55.000 0.00 0.00 0.00 3.69
3636 7570 0.616111 ACATCGACTGCTCCCTCCTT 60.616 55.000 0.00 0.00 0.00 3.36
3637 7571 0.539051 CATCGACTGCTCCCTCCTTT 59.461 55.000 0.00 0.00 0.00 3.11
3638 7572 0.827368 ATCGACTGCTCCCTCCTTTC 59.173 55.000 0.00 0.00 0.00 2.62
3639 7573 1.219393 CGACTGCTCCCTCCTTTCC 59.781 63.158 0.00 0.00 0.00 3.13
3640 7574 1.261238 CGACTGCTCCCTCCTTTCCT 61.261 60.000 0.00 0.00 0.00 3.36
3641 7575 1.867363 GACTGCTCCCTCCTTTCCTA 58.133 55.000 0.00 0.00 0.00 2.94
3642 7576 2.188817 GACTGCTCCCTCCTTTCCTAA 58.811 52.381 0.00 0.00 0.00 2.69
3643 7577 2.572104 GACTGCTCCCTCCTTTCCTAAA 59.428 50.000 0.00 0.00 0.00 1.85
3644 7578 3.193782 ACTGCTCCCTCCTTTCCTAAAT 58.806 45.455 0.00 0.00 0.00 1.40
3645 7579 4.371681 ACTGCTCCCTCCTTTCCTAAATA 58.628 43.478 0.00 0.00 0.00 1.40
3646 7580 4.978388 ACTGCTCCCTCCTTTCCTAAATAT 59.022 41.667 0.00 0.00 0.00 1.28
3647 7581 6.151049 ACTGCTCCCTCCTTTCCTAAATATA 58.849 40.000 0.00 0.00 0.00 0.86
3648 7582 6.619852 ACTGCTCCCTCCTTTCCTAAATATAA 59.380 38.462 0.00 0.00 0.00 0.98
3649 7583 6.838382 TGCTCCCTCCTTTCCTAAATATAAC 58.162 40.000 0.00 0.00 0.00 1.89
3650 7584 6.619852 TGCTCCCTCCTTTCCTAAATATAACT 59.380 38.462 0.00 0.00 0.00 2.24
3651 7585 7.162761 GCTCCCTCCTTTCCTAAATATAACTC 58.837 42.308 0.00 0.00 0.00 3.01
3652 7586 7.016760 GCTCCCTCCTTTCCTAAATATAACTCT 59.983 40.741 0.00 0.00 0.00 3.24
3653 7587 8.871570 TCCCTCCTTTCCTAAATATAACTCTT 57.128 34.615 0.00 0.00 0.00 2.85
3654 7588 9.292751 TCCCTCCTTTCCTAAATATAACTCTTT 57.707 33.333 0.00 0.00 0.00 2.52
3655 7589 9.922477 CCCTCCTTTCCTAAATATAACTCTTTT 57.078 33.333 0.00 0.00 0.00 2.27
3704 7638 9.362911 GTACGAATGTACATAGACGTAGTTTAG 57.637 37.037 27.08 9.01 46.34 1.85
3717 7651 5.567552 ACGTAGTTTAGAGTGTAGATTCGC 58.432 41.667 0.00 0.00 37.78 4.70
3718 7652 5.353678 ACGTAGTTTAGAGTGTAGATTCGCT 59.646 40.000 0.00 0.00 37.78 4.93
3719 7653 5.902981 CGTAGTTTAGAGTGTAGATTCGCTC 59.097 44.000 0.00 0.00 42.95 5.03
3720 7654 5.899120 AGTTTAGAGTGTAGATTCGCTCA 57.101 39.130 9.37 0.00 44.43 4.26
3721 7655 6.458232 AGTTTAGAGTGTAGATTCGCTCAT 57.542 37.500 9.37 0.00 44.43 2.90
3722 7656 6.868622 AGTTTAGAGTGTAGATTCGCTCATT 58.131 36.000 9.37 0.00 44.43 2.57
3723 7657 7.324178 AGTTTAGAGTGTAGATTCGCTCATTT 58.676 34.615 9.37 0.00 44.43 2.32
3724 7658 7.819900 AGTTTAGAGTGTAGATTCGCTCATTTT 59.180 33.333 9.37 0.00 44.43 1.82
3725 7659 7.525688 TTAGAGTGTAGATTCGCTCATTTTG 57.474 36.000 9.37 0.00 44.43 2.44
3726 7660 4.331168 AGAGTGTAGATTCGCTCATTTTGC 59.669 41.667 9.37 0.00 44.43 3.68
3727 7661 4.256920 AGTGTAGATTCGCTCATTTTGCT 58.743 39.130 0.00 0.00 0.00 3.91
3728 7662 4.331168 AGTGTAGATTCGCTCATTTTGCTC 59.669 41.667 0.00 0.00 0.00 4.26
3729 7663 3.623060 TGTAGATTCGCTCATTTTGCTCC 59.377 43.478 0.00 0.00 0.00 4.70
3730 7664 1.667724 AGATTCGCTCATTTTGCTCCG 59.332 47.619 0.00 0.00 0.00 4.63
3731 7665 1.398390 GATTCGCTCATTTTGCTCCGT 59.602 47.619 0.00 0.00 0.00 4.69
3732 7666 2.087501 TTCGCTCATTTTGCTCCGTA 57.912 45.000 0.00 0.00 0.00 4.02
3733 7667 2.309528 TCGCTCATTTTGCTCCGTAT 57.690 45.000 0.00 0.00 0.00 3.06
3734 7668 1.933181 TCGCTCATTTTGCTCCGTATG 59.067 47.619 0.00 0.00 0.00 2.39
3735 7669 1.665679 CGCTCATTTTGCTCCGTATGT 59.334 47.619 0.00 0.00 0.00 2.29
3736 7670 2.863740 CGCTCATTTTGCTCCGTATGTA 59.136 45.455 0.00 0.00 0.00 2.29
3737 7671 3.060272 CGCTCATTTTGCTCCGTATGTAG 60.060 47.826 0.00 0.00 0.00 2.74
3738 7672 3.871594 GCTCATTTTGCTCCGTATGTAGT 59.128 43.478 0.00 0.00 0.00 2.73
3739 7673 4.332819 GCTCATTTTGCTCCGTATGTAGTT 59.667 41.667 0.00 0.00 0.00 2.24
3740 7674 5.502544 GCTCATTTTGCTCCGTATGTAGTTC 60.503 44.000 0.00 0.00 0.00 3.01
3741 7675 5.483811 TCATTTTGCTCCGTATGTAGTTCA 58.516 37.500 0.00 0.00 0.00 3.18
3742 7676 6.112734 TCATTTTGCTCCGTATGTAGTTCAT 58.887 36.000 0.00 0.00 40.25 2.57
3743 7677 7.269316 TCATTTTGCTCCGTATGTAGTTCATA 58.731 34.615 0.00 0.00 37.91 2.15
3744 7678 7.931407 TCATTTTGCTCCGTATGTAGTTCATAT 59.069 33.333 0.00 0.00 40.54 1.78
3745 7679 8.559536 CATTTTGCTCCGTATGTAGTTCATATT 58.440 33.333 0.00 0.00 40.54 1.28
3746 7680 7.477144 TTTGCTCCGTATGTAGTTCATATTG 57.523 36.000 0.00 0.00 40.54 1.90
3747 7681 5.538118 TGCTCCGTATGTAGTTCATATTGG 58.462 41.667 5.26 5.26 40.54 3.16
3748 7682 5.303333 TGCTCCGTATGTAGTTCATATTGGA 59.697 40.000 10.96 10.96 40.63 3.53
3749 7683 6.183360 TGCTCCGTATGTAGTTCATATTGGAA 60.183 38.462 11.96 1.11 41.44 3.53
3750 7684 6.874134 GCTCCGTATGTAGTTCATATTGGAAT 59.126 38.462 11.96 0.00 41.44 3.01
3751 7685 7.063544 GCTCCGTATGTAGTTCATATTGGAATC 59.936 40.741 11.96 6.35 41.44 2.52
3752 7686 8.190326 TCCGTATGTAGTTCATATTGGAATCT 57.810 34.615 9.72 0.00 40.31 2.40
3753 7687 8.304596 TCCGTATGTAGTTCATATTGGAATCTC 58.695 37.037 9.72 0.00 40.31 2.75
3754 7688 8.307483 CCGTATGTAGTTCATATTGGAATCTCT 58.693 37.037 5.56 0.00 40.54 3.10
3762 7696 9.620259 AGTTCATATTGGAATCTCTAAAAGGAC 57.380 33.333 0.00 0.00 0.00 3.85
3763 7697 9.620259 GTTCATATTGGAATCTCTAAAAGGACT 57.380 33.333 0.00 0.00 0.00 3.85
3782 7716 9.475620 AAAGGACTAATATTTAGGAACAAAGGG 57.524 33.333 0.00 0.00 0.00 3.95
3783 7717 8.401955 AGGACTAATATTTAGGAACAAAGGGA 57.598 34.615 0.00 0.00 0.00 4.20
3784 7718 8.495260 AGGACTAATATTTAGGAACAAAGGGAG 58.505 37.037 0.00 0.00 0.00 4.30
3785 7719 8.272889 GGACTAATATTTAGGAACAAAGGGAGT 58.727 37.037 0.00 0.00 0.00 3.85
3790 7724 9.990868 AATATTTAGGAACAAAGGGAGTACAAT 57.009 29.630 0.00 0.00 0.00 2.71
3793 7727 7.801893 TTAGGAACAAAGGGAGTACAATAGA 57.198 36.000 0.00 0.00 0.00 1.98
3794 7728 6.697641 AGGAACAAAGGGAGTACAATAGAA 57.302 37.500 0.00 0.00 0.00 2.10
3795 7729 7.086685 AGGAACAAAGGGAGTACAATAGAAA 57.913 36.000 0.00 0.00 0.00 2.52
3796 7730 7.168905 AGGAACAAAGGGAGTACAATAGAAAG 58.831 38.462 0.00 0.00 0.00 2.62
3797 7731 6.940867 GGAACAAAGGGAGTACAATAGAAAGT 59.059 38.462 0.00 0.00 0.00 2.66
3798 7732 7.447545 GGAACAAAGGGAGTACAATAGAAAGTT 59.552 37.037 0.00 0.00 0.00 2.66
3799 7733 9.498176 GAACAAAGGGAGTACAATAGAAAGTTA 57.502 33.333 0.00 0.00 0.00 2.24
3800 7734 9.503399 AACAAAGGGAGTACAATAGAAAGTTAG 57.497 33.333 0.00 0.00 0.00 2.34
3801 7735 8.657712 ACAAAGGGAGTACAATAGAAAGTTAGT 58.342 33.333 0.00 0.00 0.00 2.24
3854 7788 8.659925 AATTACAAAAATGTGCATGAAAGTGA 57.340 26.923 0.00 0.00 0.00 3.41
3855 7789 8.659925 ATTACAAAAATGTGCATGAAAGTGAA 57.340 26.923 0.00 0.00 0.00 3.18
3856 7790 6.981762 ACAAAAATGTGCATGAAAGTGAAA 57.018 29.167 0.00 0.00 0.00 2.69
3857 7791 7.375106 ACAAAAATGTGCATGAAAGTGAAAA 57.625 28.000 0.00 0.00 0.00 2.29
3858 7792 7.814642 ACAAAAATGTGCATGAAAGTGAAAAA 58.185 26.923 0.00 0.00 0.00 1.94
3859 7793 8.460428 ACAAAAATGTGCATGAAAGTGAAAAAT 58.540 25.926 0.00 0.00 0.00 1.82
3860 7794 8.738554 CAAAAATGTGCATGAAAGTGAAAAATG 58.261 29.630 0.00 0.00 0.00 2.32
3861 7795 7.556733 AAATGTGCATGAAAGTGAAAAATGT 57.443 28.000 0.00 0.00 0.00 2.71
3862 7796 7.556733 AATGTGCATGAAAGTGAAAAATGTT 57.443 28.000 0.00 0.00 0.00 2.71
3863 7797 6.586868 TGTGCATGAAAGTGAAAAATGTTC 57.413 33.333 0.00 0.00 0.00 3.18
3864 7798 6.104665 TGTGCATGAAAGTGAAAAATGTTCA 58.895 32.000 0.00 0.00 33.08 3.18
3865 7799 6.762187 TGTGCATGAAAGTGAAAAATGTTCAT 59.238 30.769 0.00 0.00 39.01 2.57
3866 7800 7.924947 TGTGCATGAAAGTGAAAAATGTTCATA 59.075 29.630 0.00 0.00 36.93 2.15
3867 7801 8.763356 GTGCATGAAAGTGAAAAATGTTCATAA 58.237 29.630 0.00 0.00 36.93 1.90
3868 7802 9.322773 TGCATGAAAGTGAAAAATGTTCATAAA 57.677 25.926 0.00 0.00 36.93 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 3.750501 TCGGCCAGATAGTATCCCATA 57.249 47.619 2.24 0.00 0.00 2.74
91 93 3.055719 CAAACGCCGCCCACTGAT 61.056 61.111 0.00 0.00 0.00 2.90
169 184 2.369394 CCCTTTGCACATCCTTCCTAC 58.631 52.381 0.00 0.00 0.00 3.18
183 198 0.393820 AGCACACCAAATGCCCTTTG 59.606 50.000 2.66 2.66 44.53 2.77
185 200 0.681175 GAAGCACACCAAATGCCCTT 59.319 50.000 0.00 0.00 44.53 3.95
232 247 3.544684 TCTGATACCCACATCATTGCAC 58.455 45.455 0.00 0.00 34.50 4.57
247 262 3.754965 AGCTGCCACAAAGTTTCTGATA 58.245 40.909 0.00 0.00 0.00 2.15
345 360 1.968540 GTTCTCCAGGCAGCGCTTT 60.969 57.895 7.50 0.00 0.00 3.51
350 365 0.595095 CAACTTGTTCTCCAGGCAGC 59.405 55.000 0.00 0.00 0.00 5.25
351 366 2.260844 TCAACTTGTTCTCCAGGCAG 57.739 50.000 0.00 0.00 0.00 4.85
352 367 2.727123 TTCAACTTGTTCTCCAGGCA 57.273 45.000 0.00 0.00 0.00 4.75
353 368 3.057245 GGATTTCAACTTGTTCTCCAGGC 60.057 47.826 0.00 0.00 0.00 4.85
429 445 0.684535 TGCACCTGGTGATCTCGAAA 59.315 50.000 30.23 1.88 35.23 3.46
440 456 1.208052 AGTAGCTGTATGTGCACCTGG 59.792 52.381 15.69 1.29 0.00 4.45
475 491 1.682854 CATTATGGGTCCACATGTGCC 59.317 52.381 20.81 16.29 32.39 5.01
581 597 7.847166 TCATATAAGTTAATGTCGCACGTAG 57.153 36.000 0.00 0.00 0.00 3.51
595 614 5.528870 TCATGCACGTCGATCATATAAGTT 58.471 37.500 0.00 0.00 0.00 2.66
600 619 5.682869 CAAATTCATGCACGTCGATCATAT 58.317 37.500 0.00 0.00 0.00 1.78
660 679 4.816385 CGAGCCCTTATATTTTGCTCTGAA 59.184 41.667 8.03 0.00 44.76 3.02
665 684 3.477530 GGACGAGCCCTTATATTTTGCT 58.522 45.455 0.00 0.00 34.40 3.91
666 685 2.223377 CGGACGAGCCCTTATATTTTGC 59.777 50.000 0.00 0.00 0.00 3.68
667 686 2.806244 CCGGACGAGCCCTTATATTTTG 59.194 50.000 0.00 0.00 0.00 2.44
668 687 2.701951 TCCGGACGAGCCCTTATATTTT 59.298 45.455 0.00 0.00 0.00 1.82
675 695 3.155167 GGATCCGGACGAGCCCTT 61.155 66.667 6.12 0.00 41.58 3.95
679 699 4.267503 GGACGGATCCGGACGAGC 62.268 72.222 35.87 17.58 44.69 5.03
720 740 0.829182 ATATCCCACCCCGTACGTCC 60.829 60.000 15.21 0.00 0.00 4.79
722 742 1.751349 GCATATCCCACCCCGTACGT 61.751 60.000 15.21 0.00 0.00 3.57
723 743 1.005394 GCATATCCCACCCCGTACG 60.005 63.158 8.69 8.69 0.00 3.67
724 744 0.470766 TTGCATATCCCACCCCGTAC 59.529 55.000 0.00 0.00 0.00 3.67
725 745 0.762418 CTTGCATATCCCACCCCGTA 59.238 55.000 0.00 0.00 0.00 4.02
726 746 1.279025 ACTTGCATATCCCACCCCGT 61.279 55.000 0.00 0.00 0.00 5.28
727 747 0.535102 GACTTGCATATCCCACCCCG 60.535 60.000 0.00 0.00 0.00 5.73
733 755 0.886490 CAGCCGGACTTGCATATCCC 60.886 60.000 5.05 0.00 0.00 3.85
735 757 0.815213 TGCAGCCGGACTTGCATATC 60.815 55.000 20.38 0.00 30.62 1.63
738 760 2.547640 ATCTGCAGCCGGACTTGCAT 62.548 55.000 23.19 11.26 33.75 3.96
750 772 3.271729 AGTGAGATTTGAGCATCTGCAG 58.728 45.455 7.63 7.63 45.16 4.41
753 775 3.519579 ACGAGTGAGATTTGAGCATCTG 58.480 45.455 0.00 0.00 33.36 2.90
762 784 1.178276 AGGCGAGACGAGTGAGATTT 58.822 50.000 0.00 0.00 0.00 2.17
763 785 1.944024 CTAGGCGAGACGAGTGAGATT 59.056 52.381 0.00 0.00 0.00 2.40
778 802 2.938956 ATATTGTGGGAGCACTAGGC 57.061 50.000 0.00 0.00 45.30 3.93
790 814 5.937540 TGCGATGGAGGGTTTATATATTGTG 59.062 40.000 0.00 0.00 0.00 3.33
829 853 2.411535 GGCCTGCCGGGTTTATAAC 58.588 57.895 2.18 0.00 37.43 1.89
830 854 4.991024 GGCCTGCCGGGTTTATAA 57.009 55.556 2.18 0.00 37.43 0.98
969 1018 1.963515 GTCAAGCTCAAACCCACCATT 59.036 47.619 0.00 0.00 0.00 3.16
971 1020 0.467290 GGTCAAGCTCAAACCCACCA 60.467 55.000 0.00 0.00 0.00 4.17
972 1021 0.467290 TGGTCAAGCTCAAACCCACC 60.467 55.000 9.04 0.00 31.78 4.61
974 1023 1.214175 TCTTGGTCAAGCTCAAACCCA 59.786 47.619 5.88 0.00 38.28 4.51
975 1024 1.981256 TCTTGGTCAAGCTCAAACCC 58.019 50.000 5.88 0.00 38.28 4.11
976 1025 2.160417 CGATCTTGGTCAAGCTCAAACC 59.840 50.000 12.93 5.41 38.28 3.27
977 1026 2.413371 GCGATCTTGGTCAAGCTCAAAC 60.413 50.000 12.93 1.40 38.28 2.93
978 1027 1.806542 GCGATCTTGGTCAAGCTCAAA 59.193 47.619 12.93 0.00 38.28 2.69
979 1028 1.442769 GCGATCTTGGTCAAGCTCAA 58.557 50.000 12.93 0.00 38.28 3.02
982 1031 0.254178 ATGGCGATCTTGGTCAAGCT 59.746 50.000 5.88 0.00 38.28 3.74
1689 1759 3.554692 CGGAGGCGCACGTTCATC 61.555 66.667 10.83 0.00 0.00 2.92
1948 2081 3.501828 TGGCGCATATGGCAGTAAATAAG 59.498 43.478 10.83 0.00 45.17 1.73
2099 3142 4.695217 TTTAAATGCACTCGGTCCATTC 57.305 40.909 0.00 0.00 0.00 2.67
2594 6517 3.346315 TGGCAAAGACGTTGATCATGAT 58.654 40.909 8.25 8.25 39.87 2.45
2764 6687 2.761767 TGAGTACAAACCTAGCGCCATA 59.238 45.455 2.29 0.00 0.00 2.74
2867 6790 0.037326 GTGAGGCCGAAGACATCACA 60.037 55.000 12.74 0.00 39.97 3.58
2887 6810 2.277858 CCTAGAGGCACGTGGAACT 58.722 57.895 18.88 0.42 31.75 3.01
2900 6823 3.052620 GCACGACGCTGAGCCTAGA 62.053 63.158 0.00 0.00 37.77 2.43
2984 6913 0.096976 CAAAGACAATAGGTGCGCGG 59.903 55.000 8.83 0.00 0.00 6.46
3050 6979 9.582431 TCCGTAGTATCAGAAAACAGAAATAAG 57.418 33.333 0.00 0.00 0.00 1.73
3051 6980 9.932207 TTCCGTAGTATCAGAAAACAGAAATAA 57.068 29.630 0.00 0.00 0.00 1.40
3052 6981 9.362539 GTTCCGTAGTATCAGAAAACAGAAATA 57.637 33.333 0.00 0.00 0.00 1.40
3053 6982 7.876068 TGTTCCGTAGTATCAGAAAACAGAAAT 59.124 33.333 0.00 0.00 0.00 2.17
3059 6988 6.774354 TTGTGTTCCGTAGTATCAGAAAAC 57.226 37.500 0.00 0.00 0.00 2.43
3074 7003 9.455847 GCATAGAAGATTCAATTATTGTGTTCC 57.544 33.333 4.77 0.00 0.00 3.62
3089 7018 8.763601 ACTTCTGTAACCTAAGCATAGAAGATT 58.236 33.333 15.52 0.00 41.11 2.40
3105 7034 5.103000 AGTCACGCATCATACTTCTGTAAC 58.897 41.667 0.00 0.00 31.80 2.50
3116 7045 9.440773 ACAATATATGAAATAGTCACGCATCAT 57.559 29.630 0.00 0.00 39.72 2.45
3126 7055 9.799106 CCTTCCCAAGACAATATATGAAATAGT 57.201 33.333 0.00 0.00 28.50 2.12
3133 7062 4.728772 TGCCCTTCCCAAGACAATATATG 58.271 43.478 0.00 0.00 0.00 1.78
3134 7063 5.140454 GTTGCCCTTCCCAAGACAATATAT 58.860 41.667 0.00 0.00 30.67 0.86
3141 7074 0.673985 GTTGTTGCCCTTCCCAAGAC 59.326 55.000 0.00 0.00 0.00 3.01
3143 7076 0.389025 GTGTTGTTGCCCTTCCCAAG 59.611 55.000 0.00 0.00 0.00 3.61
3150 7083 0.604578 GCATCATGTGTTGTTGCCCT 59.395 50.000 0.00 0.00 42.68 5.19
3154 7087 1.054574 GCGTGCATCATGTGTTGTTG 58.945 50.000 0.00 0.00 0.00 3.33
3155 7088 0.953727 AGCGTGCATCATGTGTTGTT 59.046 45.000 0.00 0.00 0.00 2.83
3157 7090 0.179181 GGAGCGTGCATCATGTGTTG 60.179 55.000 0.00 0.00 0.00 3.33
3158 7091 0.321919 AGGAGCGTGCATCATGTGTT 60.322 50.000 0.00 0.00 0.00 3.32
3159 7092 0.742281 GAGGAGCGTGCATCATGTGT 60.742 55.000 0.00 0.00 0.00 3.72
3160 7093 1.434622 GGAGGAGCGTGCATCATGTG 61.435 60.000 0.00 0.00 0.00 3.21
3161 7094 1.153289 GGAGGAGCGTGCATCATGT 60.153 57.895 0.00 0.00 0.00 3.21
3162 7095 2.242572 CGGAGGAGCGTGCATCATG 61.243 63.158 0.00 0.00 0.00 3.07
3163 7096 2.107750 CGGAGGAGCGTGCATCAT 59.892 61.111 0.00 0.00 0.00 2.45
3164 7097 3.381983 ACGGAGGAGCGTGCATCA 61.382 61.111 0.00 0.00 0.00 3.07
3165 7098 2.887568 CACGGAGGAGCGTGCATC 60.888 66.667 0.00 0.00 0.00 3.91
3166 7099 4.457496 CCACGGAGGAGCGTGCAT 62.457 66.667 0.00 0.00 41.22 3.96
3176 7110 0.460311 AAATACGGCTCTCCACGGAG 59.540 55.000 6.77 6.77 43.21 4.63
3177 7111 0.458669 GAAATACGGCTCTCCACGGA 59.541 55.000 0.00 0.00 0.00 4.69
3190 7124 0.648958 GCGCACTACCACCGAAATAC 59.351 55.000 0.30 0.00 0.00 1.89
3206 7140 0.584054 GACGATGACATGAAACGCGC 60.584 55.000 5.73 0.00 0.00 6.86
3207 7141 0.713329 TGACGATGACATGAAACGCG 59.287 50.000 3.53 3.53 0.00 6.01
3208 7142 2.873170 TTGACGATGACATGAAACGC 57.127 45.000 0.00 0.00 0.00 4.84
3209 7143 4.150627 ACTCTTTGACGATGACATGAAACG 59.849 41.667 0.00 0.18 0.00 3.60
3210 7144 5.406780 AGACTCTTTGACGATGACATGAAAC 59.593 40.000 0.00 0.00 0.00 2.78
3211 7145 5.541845 AGACTCTTTGACGATGACATGAAA 58.458 37.500 0.00 0.00 0.00 2.69
3212 7146 5.139435 AGACTCTTTGACGATGACATGAA 57.861 39.130 0.00 0.00 0.00 2.57
3213 7147 4.790765 AGACTCTTTGACGATGACATGA 57.209 40.909 0.00 0.00 0.00 3.07
3214 7148 5.039984 CCTAGACTCTTTGACGATGACATG 58.960 45.833 0.00 0.00 0.00 3.21
3215 7149 4.098654 CCCTAGACTCTTTGACGATGACAT 59.901 45.833 0.00 0.00 0.00 3.06
3216 7150 3.444034 CCCTAGACTCTTTGACGATGACA 59.556 47.826 0.00 0.00 0.00 3.58
3217 7151 4.035278 CCCTAGACTCTTTGACGATGAC 57.965 50.000 0.00 0.00 0.00 3.06
3516 7450 8.434661 GTTGTCCTAATTGTTGTTGCATAATTG 58.565 33.333 0.00 0.00 0.00 2.32
3517 7451 7.602265 GGTTGTCCTAATTGTTGTTGCATAATT 59.398 33.333 0.00 0.00 0.00 1.40
3518 7452 7.096551 GGTTGTCCTAATTGTTGTTGCATAAT 58.903 34.615 0.00 0.00 0.00 1.28
3519 7453 6.451393 GGTTGTCCTAATTGTTGTTGCATAA 58.549 36.000 0.00 0.00 0.00 1.90
3520 7454 5.047660 GGGTTGTCCTAATTGTTGTTGCATA 60.048 40.000 0.00 0.00 0.00 3.14
3521 7455 4.262420 GGGTTGTCCTAATTGTTGTTGCAT 60.262 41.667 0.00 0.00 0.00 3.96
3522 7456 3.068873 GGGTTGTCCTAATTGTTGTTGCA 59.931 43.478 0.00 0.00 0.00 4.08
3523 7457 3.068873 TGGGTTGTCCTAATTGTTGTTGC 59.931 43.478 0.00 0.00 36.20 4.17
3524 7458 4.340950 AGTGGGTTGTCCTAATTGTTGTTG 59.659 41.667 0.00 0.00 36.20 3.33
3525 7459 4.542697 AGTGGGTTGTCCTAATTGTTGTT 58.457 39.130 0.00 0.00 36.20 2.83
3526 7460 4.178956 AGTGGGTTGTCCTAATTGTTGT 57.821 40.909 0.00 0.00 36.20 3.32
3527 7461 6.038271 GCTATAGTGGGTTGTCCTAATTGTTG 59.962 42.308 0.84 0.00 36.20 3.33
3528 7462 6.120220 GCTATAGTGGGTTGTCCTAATTGTT 58.880 40.000 0.84 0.00 36.20 2.83
3529 7463 5.190925 TGCTATAGTGGGTTGTCCTAATTGT 59.809 40.000 0.84 0.00 36.20 2.71
3530 7464 5.680619 TGCTATAGTGGGTTGTCCTAATTG 58.319 41.667 0.84 0.00 36.20 2.32
3531 7465 5.968676 TGCTATAGTGGGTTGTCCTAATT 57.031 39.130 0.84 0.00 36.20 1.40
3532 7466 5.968676 TTGCTATAGTGGGTTGTCCTAAT 57.031 39.130 0.84 0.00 36.20 1.73
3533 7467 5.968676 ATTGCTATAGTGGGTTGTCCTAA 57.031 39.130 0.84 0.00 36.20 2.69
3534 7468 6.378745 TCTATTGCTATAGTGGGTTGTCCTA 58.621 40.000 13.73 0.00 36.06 2.94
3535 7469 5.216622 TCTATTGCTATAGTGGGTTGTCCT 58.783 41.667 13.73 0.00 36.06 3.85
3536 7470 5.304614 TCTCTATTGCTATAGTGGGTTGTCC 59.695 44.000 13.73 0.00 36.06 4.02
3537 7471 6.183360 TGTCTCTATTGCTATAGTGGGTTGTC 60.183 42.308 13.73 2.71 36.06 3.18
3538 7472 5.661312 TGTCTCTATTGCTATAGTGGGTTGT 59.339 40.000 13.73 0.00 36.06 3.32
3539 7473 6.161855 TGTCTCTATTGCTATAGTGGGTTG 57.838 41.667 13.73 1.74 36.06 3.77
3540 7474 6.742644 GCATGTCTCTATTGCTATAGTGGGTT 60.743 42.308 13.73 0.08 36.06 4.11
3541 7475 5.279708 GCATGTCTCTATTGCTATAGTGGGT 60.280 44.000 13.73 1.34 36.06 4.51
3542 7476 5.046735 AGCATGTCTCTATTGCTATAGTGGG 60.047 44.000 13.73 7.00 44.51 4.61
3543 7477 6.035368 AGCATGTCTCTATTGCTATAGTGG 57.965 41.667 13.73 8.99 44.51 4.00
3544 7478 7.959689 AAAGCATGTCTCTATTGCTATAGTG 57.040 36.000 13.73 11.76 45.54 2.74
3545 7479 8.970859 AAAAAGCATGTCTCTATTGCTATAGT 57.029 30.769 13.73 0.00 45.54 2.12
3586 7520 7.013942 GGGAGAAAACCAGCTAGAAAGTAAAAA 59.986 37.037 0.00 0.00 0.00 1.94
3587 7521 6.489022 GGGAGAAAACCAGCTAGAAAGTAAAA 59.511 38.462 0.00 0.00 0.00 1.52
3588 7522 6.002082 GGGAGAAAACCAGCTAGAAAGTAAA 58.998 40.000 0.00 0.00 0.00 2.01
3589 7523 5.072600 TGGGAGAAAACCAGCTAGAAAGTAA 59.927 40.000 0.00 0.00 33.23 2.24
3590 7524 4.595781 TGGGAGAAAACCAGCTAGAAAGTA 59.404 41.667 0.00 0.00 33.23 2.24
3591 7525 3.394606 TGGGAGAAAACCAGCTAGAAAGT 59.605 43.478 0.00 0.00 33.23 2.66
3592 7526 4.021102 TGGGAGAAAACCAGCTAGAAAG 57.979 45.455 0.00 0.00 33.23 2.62
3593 7527 4.104102 TCTTGGGAGAAAACCAGCTAGAAA 59.896 41.667 0.00 0.00 39.57 2.52
3594 7528 3.650942 TCTTGGGAGAAAACCAGCTAGAA 59.349 43.478 0.00 0.00 39.57 2.10
3595 7529 3.248024 TCTTGGGAGAAAACCAGCTAGA 58.752 45.455 0.00 0.00 39.57 2.43
3596 7530 3.703001 TCTTGGGAGAAAACCAGCTAG 57.297 47.619 0.00 0.00 39.57 3.42
3597 7531 3.137544 TGTTCTTGGGAGAAAACCAGCTA 59.862 43.478 0.00 0.00 43.21 3.32
3598 7532 2.091885 TGTTCTTGGGAGAAAACCAGCT 60.092 45.455 0.00 0.00 43.21 4.24
3599 7533 2.306847 TGTTCTTGGGAGAAAACCAGC 58.693 47.619 0.00 0.00 43.21 4.85
3600 7534 3.189287 CGATGTTCTTGGGAGAAAACCAG 59.811 47.826 0.00 0.00 43.21 4.00
3601 7535 3.146066 CGATGTTCTTGGGAGAAAACCA 58.854 45.455 0.00 0.00 43.21 3.67
3602 7536 3.188667 GTCGATGTTCTTGGGAGAAAACC 59.811 47.826 0.00 0.00 43.21 3.27
3603 7537 4.065789 AGTCGATGTTCTTGGGAGAAAAC 58.934 43.478 0.00 0.00 43.21 2.43
3604 7538 4.065088 CAGTCGATGTTCTTGGGAGAAAA 58.935 43.478 0.00 0.00 43.21 2.29
3605 7539 3.664107 CAGTCGATGTTCTTGGGAGAAA 58.336 45.455 0.00 0.00 43.21 2.52
3606 7540 2.612972 GCAGTCGATGTTCTTGGGAGAA 60.613 50.000 0.00 0.00 39.54 2.87
3607 7541 1.066858 GCAGTCGATGTTCTTGGGAGA 60.067 52.381 0.00 0.00 0.00 3.71
3608 7542 1.066573 AGCAGTCGATGTTCTTGGGAG 60.067 52.381 0.00 0.00 0.00 4.30
3609 7543 0.976641 AGCAGTCGATGTTCTTGGGA 59.023 50.000 0.00 0.00 0.00 4.37
3610 7544 1.363744 GAGCAGTCGATGTTCTTGGG 58.636 55.000 0.00 0.00 36.30 4.12
3611 7545 1.363744 GGAGCAGTCGATGTTCTTGG 58.636 55.000 9.99 0.00 39.03 3.61
3612 7546 1.066573 AGGGAGCAGTCGATGTTCTTG 60.067 52.381 9.99 0.00 39.03 3.02
3613 7547 1.205893 GAGGGAGCAGTCGATGTTCTT 59.794 52.381 9.99 2.48 39.03 2.52
3614 7548 0.820871 GAGGGAGCAGTCGATGTTCT 59.179 55.000 9.99 0.00 39.03 3.01
3615 7549 0.179097 GGAGGGAGCAGTCGATGTTC 60.179 60.000 0.00 0.00 38.35 3.18
3616 7550 0.616111 AGGAGGGAGCAGTCGATGTT 60.616 55.000 0.00 0.00 0.00 2.71
3617 7551 0.616111 AAGGAGGGAGCAGTCGATGT 60.616 55.000 0.00 0.00 0.00 3.06
3618 7552 0.539051 AAAGGAGGGAGCAGTCGATG 59.461 55.000 0.00 0.00 0.00 3.84
3619 7553 0.827368 GAAAGGAGGGAGCAGTCGAT 59.173 55.000 0.00 0.00 0.00 3.59
3620 7554 1.258445 GGAAAGGAGGGAGCAGTCGA 61.258 60.000 0.00 0.00 0.00 4.20
3621 7555 1.219393 GGAAAGGAGGGAGCAGTCG 59.781 63.158 0.00 0.00 0.00 4.18
3622 7556 1.867363 TAGGAAAGGAGGGAGCAGTC 58.133 55.000 0.00 0.00 0.00 3.51
3623 7557 2.344093 TTAGGAAAGGAGGGAGCAGT 57.656 50.000 0.00 0.00 0.00 4.40
3624 7558 3.941704 ATTTAGGAAAGGAGGGAGCAG 57.058 47.619 0.00 0.00 0.00 4.24
3625 7559 6.619852 AGTTATATTTAGGAAAGGAGGGAGCA 59.380 38.462 0.00 0.00 0.00 4.26
3626 7560 7.016760 AGAGTTATATTTAGGAAAGGAGGGAGC 59.983 40.741 0.00 0.00 0.00 4.70
3627 7561 8.499288 AGAGTTATATTTAGGAAAGGAGGGAG 57.501 38.462 0.00 0.00 0.00 4.30
3628 7562 8.871570 AAGAGTTATATTTAGGAAAGGAGGGA 57.128 34.615 0.00 0.00 0.00 4.20
3629 7563 9.922477 AAAAGAGTTATATTTAGGAAAGGAGGG 57.078 33.333 0.00 0.00 0.00 4.30
3678 7612 9.362911 CTAAACTACGTCTATGTACATTCGTAC 57.637 37.037 23.45 13.77 46.94 3.67
3679 7613 9.313118 TCTAAACTACGTCTATGTACATTCGTA 57.687 33.333 24.55 24.55 33.70 3.43
3680 7614 8.201554 TCTAAACTACGTCTATGTACATTCGT 57.798 34.615 24.82 24.82 35.73 3.85
3681 7615 8.333908 ACTCTAAACTACGTCTATGTACATTCG 58.666 37.037 14.77 17.44 0.00 3.34
3682 7616 9.435802 CACTCTAAACTACGTCTATGTACATTC 57.564 37.037 14.77 4.67 0.00 2.67
3683 7617 8.954350 ACACTCTAAACTACGTCTATGTACATT 58.046 33.333 14.77 0.00 0.00 2.71
3684 7618 8.503458 ACACTCTAAACTACGTCTATGTACAT 57.497 34.615 13.93 13.93 0.00 2.29
3685 7619 7.912056 ACACTCTAAACTACGTCTATGTACA 57.088 36.000 0.00 0.00 0.00 2.90
3686 7620 9.307121 TCTACACTCTAAACTACGTCTATGTAC 57.693 37.037 0.00 0.00 0.00 2.90
3688 7622 8.961294 ATCTACACTCTAAACTACGTCTATGT 57.039 34.615 0.00 0.00 0.00 2.29
3689 7623 9.866936 GAATCTACACTCTAAACTACGTCTATG 57.133 37.037 0.00 0.00 0.00 2.23
3690 7624 8.763356 CGAATCTACACTCTAAACTACGTCTAT 58.237 37.037 0.00 0.00 0.00 1.98
3691 7625 7.254252 GCGAATCTACACTCTAAACTACGTCTA 60.254 40.741 0.00 0.00 0.00 2.59
3692 7626 6.456718 GCGAATCTACACTCTAAACTACGTCT 60.457 42.308 0.00 0.00 0.00 4.18
3693 7627 5.676310 GCGAATCTACACTCTAAACTACGTC 59.324 44.000 0.00 0.00 0.00 4.34
3694 7628 5.353678 AGCGAATCTACACTCTAAACTACGT 59.646 40.000 0.00 0.00 0.00 3.57
3695 7629 5.808403 AGCGAATCTACACTCTAAACTACG 58.192 41.667 0.00 0.00 0.00 3.51
3696 7630 6.783162 TGAGCGAATCTACACTCTAAACTAC 58.217 40.000 0.00 0.00 0.00 2.73
3697 7631 6.997239 TGAGCGAATCTACACTCTAAACTA 57.003 37.500 0.00 0.00 0.00 2.24
3698 7632 5.899120 TGAGCGAATCTACACTCTAAACT 57.101 39.130 0.00 0.00 0.00 2.66
3699 7633 7.527084 AAATGAGCGAATCTACACTCTAAAC 57.473 36.000 0.00 0.00 0.00 2.01
3700 7634 7.413000 GCAAAATGAGCGAATCTACACTCTAAA 60.413 37.037 0.00 0.00 0.00 1.85
3701 7635 6.036083 GCAAAATGAGCGAATCTACACTCTAA 59.964 38.462 0.00 0.00 0.00 2.10
3702 7636 5.520288 GCAAAATGAGCGAATCTACACTCTA 59.480 40.000 0.00 0.00 0.00 2.43
3703 7637 4.331168 GCAAAATGAGCGAATCTACACTCT 59.669 41.667 0.00 0.00 0.00 3.24
3704 7638 4.331168 AGCAAAATGAGCGAATCTACACTC 59.669 41.667 0.00 0.00 37.01 3.51
3705 7639 4.256920 AGCAAAATGAGCGAATCTACACT 58.743 39.130 0.00 0.00 37.01 3.55
3706 7640 4.494855 GGAGCAAAATGAGCGAATCTACAC 60.495 45.833 0.00 0.00 37.01 2.90
3707 7641 3.623060 GGAGCAAAATGAGCGAATCTACA 59.377 43.478 0.00 0.00 37.01 2.74
3708 7642 3.302740 CGGAGCAAAATGAGCGAATCTAC 60.303 47.826 0.00 0.00 37.01 2.59
3709 7643 2.866156 CGGAGCAAAATGAGCGAATCTA 59.134 45.455 0.00 0.00 37.01 1.98
3710 7644 1.667724 CGGAGCAAAATGAGCGAATCT 59.332 47.619 0.00 0.00 37.01 2.40
3711 7645 1.398390 ACGGAGCAAAATGAGCGAATC 59.602 47.619 0.00 0.00 37.01 2.52
3712 7646 1.453155 ACGGAGCAAAATGAGCGAAT 58.547 45.000 0.00 0.00 37.01 3.34
3713 7647 2.087501 TACGGAGCAAAATGAGCGAA 57.912 45.000 0.00 0.00 37.01 4.70
3714 7648 1.933181 CATACGGAGCAAAATGAGCGA 59.067 47.619 0.00 0.00 37.01 4.93
3715 7649 1.665679 ACATACGGAGCAAAATGAGCG 59.334 47.619 0.00 0.00 37.01 5.03
3716 7650 3.871594 ACTACATACGGAGCAAAATGAGC 59.128 43.478 0.00 0.00 0.00 4.26
3717 7651 5.580691 TGAACTACATACGGAGCAAAATGAG 59.419 40.000 0.00 0.00 0.00 2.90
3718 7652 5.483811 TGAACTACATACGGAGCAAAATGA 58.516 37.500 0.00 0.00 0.00 2.57
3719 7653 5.794687 TGAACTACATACGGAGCAAAATG 57.205 39.130 0.00 0.00 0.00 2.32
3720 7654 8.559536 CAATATGAACTACATACGGAGCAAAAT 58.440 33.333 0.00 0.00 43.12 1.82
3721 7655 7.011950 CCAATATGAACTACATACGGAGCAAAA 59.988 37.037 0.00 0.00 43.12 2.44
3722 7656 6.481976 CCAATATGAACTACATACGGAGCAAA 59.518 38.462 0.00 0.00 43.12 3.68
3723 7657 5.989168 CCAATATGAACTACATACGGAGCAA 59.011 40.000 0.00 0.00 43.12 3.91
3724 7658 5.303333 TCCAATATGAACTACATACGGAGCA 59.697 40.000 0.00 0.00 43.12 4.26
3725 7659 5.779922 TCCAATATGAACTACATACGGAGC 58.220 41.667 0.00 0.00 43.12 4.70
3726 7660 8.307483 AGATTCCAATATGAACTACATACGGAG 58.693 37.037 0.00 0.00 42.33 4.63
3727 7661 8.190326 AGATTCCAATATGAACTACATACGGA 57.810 34.615 0.00 0.00 43.12 4.69
3728 7662 8.307483 AGAGATTCCAATATGAACTACATACGG 58.693 37.037 0.00 0.00 43.12 4.02
3736 7670 9.620259 GTCCTTTTAGAGATTCCAATATGAACT 57.380 33.333 0.00 0.00 0.00 3.01
3737 7671 9.620259 AGTCCTTTTAGAGATTCCAATATGAAC 57.380 33.333 0.00 0.00 0.00 3.18
3756 7690 9.475620 CCCTTTGTTCCTAAATATTAGTCCTTT 57.524 33.333 0.00 0.00 0.00 3.11
3757 7691 8.842764 TCCCTTTGTTCCTAAATATTAGTCCTT 58.157 33.333 0.00 0.00 0.00 3.36
3758 7692 8.401955 TCCCTTTGTTCCTAAATATTAGTCCT 57.598 34.615 0.00 0.00 0.00 3.85
3759 7693 8.272889 ACTCCCTTTGTTCCTAAATATTAGTCC 58.727 37.037 0.00 0.00 0.00 3.85
3764 7698 9.990868 ATTGTACTCCCTTTGTTCCTAAATATT 57.009 29.630 0.00 0.00 0.00 1.28
3767 7701 8.832735 TCTATTGTACTCCCTTTGTTCCTAAAT 58.167 33.333 0.00 0.00 0.00 1.40
3768 7702 8.209802 TCTATTGTACTCCCTTTGTTCCTAAA 57.790 34.615 0.00 0.00 0.00 1.85
3769 7703 7.801893 TCTATTGTACTCCCTTTGTTCCTAA 57.198 36.000 0.00 0.00 0.00 2.69
3770 7704 7.801893 TTCTATTGTACTCCCTTTGTTCCTA 57.198 36.000 0.00 0.00 0.00 2.94
3771 7705 6.697641 TTCTATTGTACTCCCTTTGTTCCT 57.302 37.500 0.00 0.00 0.00 3.36
3772 7706 6.940867 ACTTTCTATTGTACTCCCTTTGTTCC 59.059 38.462 0.00 0.00 0.00 3.62
3773 7707 7.981102 ACTTTCTATTGTACTCCCTTTGTTC 57.019 36.000 0.00 0.00 0.00 3.18
3774 7708 9.503399 CTAACTTTCTATTGTACTCCCTTTGTT 57.497 33.333 0.00 0.00 0.00 2.83
3775 7709 8.657712 ACTAACTTTCTATTGTACTCCCTTTGT 58.342 33.333 0.00 0.00 0.00 2.83
3828 7762 9.107177 TCACTTTCATGCACATTTTTGTAATTT 57.893 25.926 0.00 0.00 0.00 1.82
3829 7763 8.659925 TCACTTTCATGCACATTTTTGTAATT 57.340 26.923 0.00 0.00 0.00 1.40
3830 7764 8.659925 TTCACTTTCATGCACATTTTTGTAAT 57.340 26.923 0.00 0.00 0.00 1.89
3831 7765 8.484641 TTTCACTTTCATGCACATTTTTGTAA 57.515 26.923 0.00 0.00 0.00 2.41
3832 7766 8.484641 TTTTCACTTTCATGCACATTTTTGTA 57.515 26.923 0.00 0.00 0.00 2.41
3833 7767 6.981762 TTTCACTTTCATGCACATTTTTGT 57.018 29.167 0.00 0.00 0.00 2.83
3834 7768 8.738554 CATTTTTCACTTTCATGCACATTTTTG 58.261 29.630 0.00 0.00 0.00 2.44
3835 7769 8.460428 ACATTTTTCACTTTCATGCACATTTTT 58.540 25.926 0.00 0.00 0.00 1.94
3836 7770 7.987649 ACATTTTTCACTTTCATGCACATTTT 58.012 26.923 0.00 0.00 0.00 1.82
3837 7771 7.556733 ACATTTTTCACTTTCATGCACATTT 57.443 28.000 0.00 0.00 0.00 2.32
3838 7772 7.280428 TGAACATTTTTCACTTTCATGCACATT 59.720 29.630 0.00 0.00 0.00 2.71
3839 7773 6.762187 TGAACATTTTTCACTTTCATGCACAT 59.238 30.769 0.00 0.00 0.00 3.21
3840 7774 6.104665 TGAACATTTTTCACTTTCATGCACA 58.895 32.000 0.00 0.00 0.00 4.57
3841 7775 6.586868 TGAACATTTTTCACTTTCATGCAC 57.413 33.333 0.00 0.00 0.00 4.57
3842 7776 8.883954 TTATGAACATTTTTCACTTTCATGCA 57.116 26.923 5.57 0.00 37.45 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.