Multiple sequence alignment - TraesCS3D01G082300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G082300 chr3D 100.000 3891 0 0 1 3891 41700261 41696371 0.000000e+00 7186
1 TraesCS3D01G082300 chr3A 90.909 3267 182 48 1 3209 53212459 53209250 0.000000e+00 4281
2 TraesCS3D01G082300 chr3A 83.436 163 18 7 3504 3664 576266386 576266541 4.050000e-30 143
3 TraesCS3D01G082300 chr3B 92.584 2670 104 36 778 3400 65196357 65193735 0.000000e+00 3747
4 TraesCS3D01G082300 chr3B 81.164 292 11 18 3384 3671 65192647 65192396 1.100000e-45 195
5 TraesCS3D01G082300 chr7A 86.713 143 17 2 3504 3646 69309597 69309737 1.450000e-34 158
6 TraesCS3D01G082300 chr5D 86.986 146 11 7 3506 3646 482454277 482454419 1.450000e-34 158
7 TraesCS3D01G082300 chr1D 84.615 169 13 8 3502 3665 339571571 339571411 5.210000e-34 156
8 TraesCS3D01G082300 chr2D 85.915 142 16 4 3507 3646 592647360 592647221 8.710000e-32 148
9 TraesCS3D01G082300 chr2D 85.315 143 17 3 3507 3646 592648633 592648492 1.130000e-30 145
10 TraesCS3D01G082300 chr2B 84.868 152 11 9 3502 3646 43427131 43427277 4.050000e-30 143
11 TraesCS3D01G082300 chr6D 84.564 149 14 8 3504 3646 28399261 28399406 5.240000e-29 139
12 TraesCS3D01G082300 chr2A 82.099 162 21 7 3505 3664 197250061 197250216 8.770000e-27 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G082300 chr3D 41696371 41700261 3890 True 7186 7186 100.000 1 3891 1 chr3D.!!$R1 3890
1 TraesCS3D01G082300 chr3A 53209250 53212459 3209 True 4281 4281 90.909 1 3209 1 chr3A.!!$R1 3208
2 TraesCS3D01G082300 chr3B 65192396 65196357 3961 True 1971 3747 86.874 778 3671 2 chr3B.!!$R1 2893

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
402 406 0.107017 CCGGATTGCAAGGAGGTCAT 60.107 55.0 4.94 0.0 0.0 3.06 F
1194 1222 0.036952 CGTGAGTGCTCCCATGTCTT 60.037 55.0 0.00 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1507 1538 0.249114 GCTGCGGCTACTCTACCTTC 60.249 60.0 11.21 0.0 35.22 3.46 R
2926 3021 0.605589 AGTCTCTCTCCAGGCAAACG 59.394 55.0 0.00 0.0 0.00 3.60 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 0.242017 GTGCACTTGACCAATGAGGC 59.758 55.000 10.32 0.00 43.14 4.70
40 41 0.396435 ACTTGACCAATGAGGCGACA 59.604 50.000 0.00 0.00 43.14 4.35
115 116 9.953565 CTATTCTCTATCTAGGTGCTTAGTAGT 57.046 37.037 0.00 0.00 0.00 2.73
166 169 3.376546 AGAAAGAGCAAATGGATCGAAGC 59.623 43.478 0.00 0.00 36.90 3.86
170 173 2.161855 AGCAAATGGATCGAAGCAACA 58.838 42.857 0.00 0.00 0.00 3.33
172 175 2.095059 GCAAATGGATCGAAGCAACAGT 60.095 45.455 0.00 0.00 0.00 3.55
195 198 3.096092 GGCTTTGTCACCCCAAATATGA 58.904 45.455 0.00 0.00 34.07 2.15
212 215 9.918630 CCAAATATGAATGTTAGATTTGATCCC 57.081 33.333 7.11 0.00 38.99 3.85
251 254 3.433957 CGAGAGACGTAATCCGAGATGAT 59.566 47.826 0.00 0.00 40.70 2.45
313 316 1.866601 GGCTTTGAACATTGCAACCAC 59.133 47.619 0.00 0.00 0.00 4.16
336 339 2.354821 GTGGAAAACTTCGTCAGTGCTT 59.645 45.455 0.00 0.00 35.12 3.91
348 351 1.555075 TCAGTGCTTGATGGTCCCTAC 59.445 52.381 0.00 0.00 0.00 3.18
382 385 1.967319 GCCAAAGGCTATCCATTCGA 58.033 50.000 0.00 0.00 46.69 3.71
383 386 1.604278 GCCAAAGGCTATCCATTCGAC 59.396 52.381 0.00 0.00 46.69 4.20
384 387 2.222027 CCAAAGGCTATCCATTCGACC 58.778 52.381 0.00 0.00 33.74 4.79
402 406 0.107017 CCGGATTGCAAGGAGGTCAT 60.107 55.000 4.94 0.00 0.00 3.06
439 443 2.094675 AGGACAATGGATTTTCGGCAG 58.905 47.619 0.00 0.00 0.00 4.85
442 446 1.203052 ACAATGGATTTTCGGCAGCTG 59.797 47.619 10.11 10.11 0.00 4.24
459 463 2.239150 AGCTGTGAATGCTCCAATCTCT 59.761 45.455 0.00 0.00 35.67 3.10
475 479 5.065090 CCAATCTCTGACGACATTTGCATAA 59.935 40.000 0.00 0.00 0.00 1.90
476 480 6.403527 CCAATCTCTGACGACATTTGCATAAA 60.404 38.462 0.00 0.00 0.00 1.40
510 514 8.950007 TTTTTGGGAGAGTACCTTATCATTTT 57.050 30.769 0.00 0.00 0.00 1.82
549 553 8.492782 ACTAGTTCATACTCTAGCTAAGGTGTA 58.507 37.037 0.00 0.00 37.67 2.90
558 562 5.004448 TCTAGCTAAGGTGTATGATCCTCG 58.996 45.833 0.00 0.00 33.09 4.63
561 565 4.461081 AGCTAAGGTGTATGATCCTCGATC 59.539 45.833 0.00 0.00 39.31 3.69
574 578 1.672881 CCTCGATCAGATGTTTTGGGC 59.327 52.381 0.00 0.00 0.00 5.36
575 579 2.636830 CTCGATCAGATGTTTTGGGCT 58.363 47.619 0.00 0.00 0.00 5.19
584 588 0.958091 TGTTTTGGGCTGATGAACCG 59.042 50.000 0.00 0.00 0.00 4.44
592 596 0.445436 GCTGATGAACCGCTGAGTTG 59.555 55.000 0.00 0.00 0.00 3.16
596 600 3.935203 CTGATGAACCGCTGAGTTGTATT 59.065 43.478 0.00 0.00 0.00 1.89
616 620 7.984391 TGTATTGTTGCTATGTAATTGGTGAG 58.016 34.615 0.00 0.00 0.00 3.51
629 633 8.911918 TGTAATTGGTGAGTGTAAGTGTTATT 57.088 30.769 0.00 0.00 0.00 1.40
631 635 9.607285 GTAATTGGTGAGTGTAAGTGTTATTTG 57.393 33.333 0.00 0.00 0.00 2.32
633 637 7.490962 TTGGTGAGTGTAAGTGTTATTTGAG 57.509 36.000 0.00 0.00 0.00 3.02
635 639 6.481976 TGGTGAGTGTAAGTGTTATTTGAGTG 59.518 38.462 0.00 0.00 0.00 3.51
636 640 6.704493 GGTGAGTGTAAGTGTTATTTGAGTGA 59.296 38.462 0.00 0.00 0.00 3.41
747 753 8.863872 AAGCATTATAAGTTCAGTTTGGTAGT 57.136 30.769 0.00 0.00 0.00 2.73
748 754 9.953565 AAGCATTATAAGTTCAGTTTGGTAGTA 57.046 29.630 0.00 0.00 0.00 1.82
749 755 9.953565 AGCATTATAAGTTCAGTTTGGTAGTAA 57.046 29.630 0.00 0.00 0.00 2.24
884 893 1.270358 GGCTGGGCTACTAGTATGCAC 60.270 57.143 19.36 17.54 0.00 4.57
911 925 0.401979 CCCTCCCAGTCCATACCCAT 60.402 60.000 0.00 0.00 0.00 4.00
999 1027 3.077556 CTAGCCAGGTCCACCGCT 61.078 66.667 3.92 3.92 42.08 5.52
1182 1210 2.202797 CAGGGATCCGCGTGAGTG 60.203 66.667 4.92 0.00 42.41 3.51
1189 1217 4.457496 CCGCGTGAGTGCTCCCAT 62.457 66.667 4.92 0.00 41.13 4.00
1193 1221 1.593787 CGTGAGTGCTCCCATGTCT 59.406 57.895 0.00 0.00 0.00 3.41
1194 1222 0.036952 CGTGAGTGCTCCCATGTCTT 60.037 55.000 0.00 0.00 0.00 3.01
1215 1245 1.668294 CCTACCTGCCTGCTATCCG 59.332 63.158 0.00 0.00 0.00 4.18
1216 1246 1.115930 CCTACCTGCCTGCTATCCGT 61.116 60.000 0.00 0.00 0.00 4.69
1217 1247 0.315568 CTACCTGCCTGCTATCCGTC 59.684 60.000 0.00 0.00 0.00 4.79
1219 1249 2.423446 CTGCCTGCTATCCGTCCC 59.577 66.667 0.00 0.00 0.00 4.46
1220 1250 3.161450 TGCCTGCTATCCGTCCCC 61.161 66.667 0.00 0.00 0.00 4.81
1221 1251 4.301027 GCCTGCTATCCGTCCCCG 62.301 72.222 0.00 0.00 0.00 5.73
1244 1274 2.687805 CCTCCTCACTTCGCGACGA 61.688 63.158 20.33 10.57 0.00 4.20
1343 1373 8.266473 TCGGTTAATTATGGTTTTAGCTCCTAA 58.734 33.333 0.00 0.00 0.00 2.69
1465 1496 2.135933 CCGATCCTTCGTTCTATTGCC 58.864 52.381 0.00 0.00 43.97 4.52
1507 1538 3.334583 TTGTCTAGGCAAACAGCTAGG 57.665 47.619 7.46 0.00 44.79 3.02
1545 1576 3.256631 CAGCCAATTGGTGAGCTTTTACT 59.743 43.478 25.19 7.18 45.48 2.24
1752 1789 8.318412 TGTAATCTCATGGTTTTACTGCTCTTA 58.682 33.333 0.00 0.00 0.00 2.10
1785 1831 8.265055 AGAACTAGTATATGCCAAGCACTTTTA 58.735 33.333 0.00 0.00 43.04 1.52
1801 1847 6.599638 AGCACTTTTACAGATAGATTGGTTCC 59.400 38.462 0.00 0.00 0.00 3.62
1833 1880 8.830580 GTTAGATGTTGCATCATGTACAGTAAT 58.169 33.333 14.89 0.00 0.00 1.89
1835 1882 8.962884 AGATGTTGCATCATGTACAGTAATAA 57.037 30.769 14.89 0.00 0.00 1.40
1836 1883 9.394767 AGATGTTGCATCATGTACAGTAATAAA 57.605 29.630 14.89 0.00 0.00 1.40
1837 1884 9.655769 GATGTTGCATCATGTACAGTAATAAAG 57.344 33.333 14.89 0.00 0.00 1.85
1839 1886 9.008965 TGTTGCATCATGTACAGTAATAAAGTT 57.991 29.630 0.33 0.00 0.00 2.66
1840 1887 9.490663 GTTGCATCATGTACAGTAATAAAGTTC 57.509 33.333 0.33 0.00 0.00 3.01
1841 1888 9.448438 TTGCATCATGTACAGTAATAAAGTTCT 57.552 29.630 0.33 0.00 0.00 3.01
1885 1934 5.289675 CCTTGACGTTCTAAACTGAGCTATG 59.710 44.000 0.00 0.00 0.00 2.23
1959 2012 7.755582 AAGTTTGATTCCTTTTTCTTGTTCG 57.244 32.000 0.00 0.00 0.00 3.95
1960 2013 5.748630 AGTTTGATTCCTTTTTCTTGTTCGC 59.251 36.000 0.00 0.00 0.00 4.70
1966 2019 4.200874 TCCTTTTTCTTGTTCGCCTTACA 58.799 39.130 0.00 0.00 0.00 2.41
1972 2025 3.857052 TCTTGTTCGCCTTACATACCTG 58.143 45.455 0.00 0.00 0.00 4.00
1983 2036 6.292865 CGCCTTACATACCTGTTTGTATCATG 60.293 42.308 2.21 0.00 36.79 3.07
1987 2040 9.161629 CTTACATACCTGTTTGTATCATGTGAA 57.838 33.333 2.21 0.00 36.79 3.18
1988 2041 7.994425 ACATACCTGTTTGTATCATGTGAAA 57.006 32.000 0.00 0.00 28.70 2.69
1997 2050 4.650734 TGTATCATGTGAAAGCCAGTGAA 58.349 39.130 0.00 0.00 0.00 3.18
2013 2066 7.062322 AGCCAGTGAATATCCATGTATTTTGA 58.938 34.615 0.00 0.00 0.00 2.69
2222 2296 7.181305 TCCACTCCACTATGGTGTTATAGAAAA 59.819 37.037 8.53 0.00 41.00 2.29
2253 2327 7.384932 ACTTTTATCATTTGCACTTTTAGTGGC 59.615 33.333 8.73 2.53 46.01 5.01
2398 2472 7.328737 CCCGTTCTGTATATTATTCACTAGTGC 59.671 40.741 18.45 1.31 0.00 4.40
2479 2570 6.548171 TGCTAAACTGATAATTTTGTACGCC 58.452 36.000 0.00 0.00 0.00 5.68
2565 2656 7.505585 TGAAGAAGTTTGAATGGGTAAGTGATT 59.494 33.333 0.00 0.00 0.00 2.57
2651 2744 3.181456 GGCTGATACTCTTGCTCTGGAAT 60.181 47.826 0.00 0.00 0.00 3.01
2670 2765 6.118170 TGGAATTCTGGATTCACTCTCATTC 58.882 40.000 10.70 0.00 44.91 2.67
2777 2872 4.085357 ACTGTCCATGTGCAGAAACTTA 57.915 40.909 17.25 0.00 36.62 2.24
2782 2877 3.825585 TCCATGTGCAGAAACTTATTGCA 59.174 39.130 0.00 0.00 44.81 4.08
2926 3021 0.039527 CACCGTTTTTGTAGCTGGCC 60.040 55.000 0.00 0.00 0.00 5.36
2927 3022 1.209127 CCGTTTTTGTAGCTGGCCG 59.791 57.895 0.00 0.00 0.00 6.13
2928 3023 1.512156 CCGTTTTTGTAGCTGGCCGT 61.512 55.000 0.00 0.00 0.00 5.68
2929 3024 0.309612 CGTTTTTGTAGCTGGCCGTT 59.690 50.000 0.00 0.00 0.00 4.44
2930 3025 1.268845 CGTTTTTGTAGCTGGCCGTTT 60.269 47.619 0.00 0.00 0.00 3.60
2931 3026 2.124122 GTTTTTGTAGCTGGCCGTTTG 58.876 47.619 0.00 0.00 0.00 2.93
2932 3027 0.031449 TTTTGTAGCTGGCCGTTTGC 59.969 50.000 0.00 0.00 40.16 3.68
2941 3036 2.347490 GCCGTTTGCCTGGAGAGA 59.653 61.111 0.00 0.00 0.00 3.10
2942 3037 1.743252 GCCGTTTGCCTGGAGAGAG 60.743 63.158 0.00 0.00 0.00 3.20
2943 3038 1.975327 CCGTTTGCCTGGAGAGAGA 59.025 57.895 0.00 0.00 0.00 3.10
2944 3039 0.390472 CCGTTTGCCTGGAGAGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
2945 3040 0.605589 CGTTTGCCTGGAGAGAGACT 59.394 55.000 0.00 0.00 0.00 3.24
2955 3050 2.041755 TGGAGAGAGACTCTTGGTAGCA 59.958 50.000 6.40 0.00 41.35 3.49
3097 3203 4.562757 CGGAGGAGTAGATTTGGTGAAACA 60.563 45.833 0.00 0.00 39.98 2.83
3169 3276 2.289694 CCAATCTTAGCCCCTGGTATCG 60.290 54.545 0.00 0.00 0.00 2.92
3182 3289 1.268692 TGGTATCGTATCGTTGTCGCC 60.269 52.381 0.00 0.00 36.96 5.54
3218 3325 5.121768 CGTAAATCAGATTTCCGAGGTGTTT 59.878 40.000 14.05 0.00 34.10 2.83
3219 3326 5.629079 AAATCAGATTTCCGAGGTGTTTC 57.371 39.130 2.20 0.00 0.00 2.78
3220 3327 2.683968 TCAGATTTCCGAGGTGTTTCG 58.316 47.619 0.00 0.00 40.18 3.46
3283 3390 3.691118 TCTTGGCTACATTGATGCAACTC 59.309 43.478 0.00 0.00 0.00 3.01
3292 3399 1.357137 TGATGCAACTCCTGGGTGTA 58.643 50.000 0.00 0.00 34.56 2.90
3379 3486 8.812329 TCAAAACAAATACCTGAAATTTTGACG 58.188 29.630 5.40 0.00 38.79 4.35
3401 4612 4.660414 CGATTTTCGAATTTGCAAACGTGG 60.660 41.667 15.41 7.17 43.74 4.94
3407 4618 5.092105 TCGAATTTGCAAACGTGGATATTG 58.908 37.500 15.41 0.00 29.24 1.90
3412 4623 3.485947 GCAAACGTGGATATTGCAAGA 57.514 42.857 15.19 0.00 46.57 3.02
3413 4624 3.171277 GCAAACGTGGATATTGCAAGAC 58.829 45.455 15.19 0.00 46.57 3.01
3414 4625 3.365868 GCAAACGTGGATATTGCAAGACA 60.366 43.478 15.19 0.00 46.57 3.41
3415 4626 4.793071 CAAACGTGGATATTGCAAGACAA 58.207 39.130 4.94 0.00 44.01 3.18
3432 4643 1.067516 ACAAAGTTGCACTGCCATGTC 59.932 47.619 0.00 0.00 0.00 3.06
3433 4644 0.675633 AAAGTTGCACTGCCATGTCC 59.324 50.000 0.00 0.00 0.00 4.02
3434 4645 1.518056 AAGTTGCACTGCCATGTCCG 61.518 55.000 0.00 0.00 0.00 4.79
3435 4646 2.112928 TTGCACTGCCATGTCCGT 59.887 55.556 0.00 0.00 0.00 4.69
3436 4647 0.953471 GTTGCACTGCCATGTCCGTA 60.953 55.000 0.00 0.00 0.00 4.02
3437 4648 0.953471 TTGCACTGCCATGTCCGTAC 60.953 55.000 0.00 0.00 0.00 3.67
3438 4649 1.375396 GCACTGCCATGTCCGTACA 60.375 57.895 0.00 0.00 40.69 2.90
3442 4653 0.179111 CTGCCATGTCCGTACACGAT 60.179 55.000 2.76 0.00 43.02 3.73
3451 4662 1.298413 CGTACACGATCGAGCAGGG 60.298 63.158 24.34 6.15 43.02 4.45
3466 4677 4.301628 GAGCAGGGTTGATTTGAAAACAG 58.698 43.478 0.00 0.00 0.00 3.16
3554 4768 4.760878 TGCCGTAAGTATTGCACATCTAA 58.239 39.130 0.00 0.00 0.00 2.10
3555 4769 4.808895 TGCCGTAAGTATTGCACATCTAAG 59.191 41.667 0.00 0.00 0.00 2.18
3556 4770 4.809426 GCCGTAAGTATTGCACATCTAAGT 59.191 41.667 0.00 0.00 0.00 2.24
3557 4771 5.050972 GCCGTAAGTATTGCACATCTAAGTC 60.051 44.000 0.00 0.00 0.00 3.01
3558 4772 6.273825 CCGTAAGTATTGCACATCTAAGTCT 58.726 40.000 0.00 0.00 0.00 3.24
3559 4773 6.757010 CCGTAAGTATTGCACATCTAAGTCTT 59.243 38.462 0.00 0.00 0.00 3.01
3560 4774 7.919091 CCGTAAGTATTGCACATCTAAGTCTTA 59.081 37.037 0.00 0.00 0.00 2.10
3561 4775 9.464714 CGTAAGTATTGCACATCTAAGTCTTAT 57.535 33.333 0.00 0.00 0.00 1.73
3564 4778 8.879342 AGTATTGCACATCTAAGTCTTATGTC 57.121 34.615 0.00 0.00 31.60 3.06
3565 4779 8.478066 AGTATTGCACATCTAAGTCTTATGTCA 58.522 33.333 0.00 0.00 31.60 3.58
3566 4780 9.265901 GTATTGCACATCTAAGTCTTATGTCAT 57.734 33.333 0.00 0.00 31.60 3.06
3567 4781 8.743085 ATTGCACATCTAAGTCTTATGTCATT 57.257 30.769 0.00 0.00 31.60 2.57
3568 4782 7.543947 TGCACATCTAAGTCTTATGTCATTG 57.456 36.000 0.00 0.00 31.60 2.82
3569 4783 7.330262 TGCACATCTAAGTCTTATGTCATTGA 58.670 34.615 0.00 0.00 31.60 2.57
3570 4784 7.989170 TGCACATCTAAGTCTTATGTCATTGAT 59.011 33.333 0.00 0.00 31.60 2.57
3571 4785 8.494347 GCACATCTAAGTCTTATGTCATTGATC 58.506 37.037 0.00 0.00 31.60 2.92
3572 4786 9.761504 CACATCTAAGTCTTATGTCATTGATCT 57.238 33.333 0.00 0.00 31.60 2.75
3576 4790 9.952188 TCTAAGTCTTATGTCATTGATCTTACG 57.048 33.333 0.00 0.00 0.00 3.18
3581 4795 6.754675 TCTTATGTCATTGATCTTACGCGAAA 59.245 34.615 15.93 0.00 0.00 3.46
3585 4799 7.297229 TGTCATTGATCTTACGCGAAAATTA 57.703 32.000 15.93 0.00 0.00 1.40
3586 4800 7.398746 TGTCATTGATCTTACGCGAAAATTAG 58.601 34.615 15.93 0.10 0.00 1.73
3591 4805 4.316375 TCTTACGCGAAAATTAGTGTGC 57.684 40.909 15.93 0.00 32.87 4.57
3642 4857 6.367374 TCCCATACTTGATTGTGTCACTTA 57.633 37.500 4.27 0.00 36.32 2.24
3643 4858 6.406370 TCCCATACTTGATTGTGTCACTTAG 58.594 40.000 4.27 0.00 36.32 2.18
3644 4859 6.212589 TCCCATACTTGATTGTGTCACTTAGA 59.787 38.462 4.27 0.00 36.32 2.10
3645 4860 7.050377 CCCATACTTGATTGTGTCACTTAGAT 58.950 38.462 4.27 0.00 36.32 1.98
3646 4861 7.554118 CCCATACTTGATTGTGTCACTTAGATT 59.446 37.037 4.27 0.00 36.32 2.40
3647 4862 8.950210 CCATACTTGATTGTGTCACTTAGATTT 58.050 33.333 4.27 0.00 36.32 2.17
3671 4886 4.339247 AGATGTGCAATAACTAATGTGCCC 59.661 41.667 0.00 0.00 36.12 5.36
3672 4887 3.696045 TGTGCAATAACTAATGTGCCCT 58.304 40.909 0.00 0.00 36.12 5.19
3673 4888 3.694072 TGTGCAATAACTAATGTGCCCTC 59.306 43.478 0.00 0.00 36.12 4.30
3674 4889 3.066760 GTGCAATAACTAATGTGCCCTCC 59.933 47.826 0.00 0.00 36.12 4.30
3675 4890 3.287222 GCAATAACTAATGTGCCCTCCA 58.713 45.455 0.00 0.00 0.00 3.86
3676 4891 3.699038 GCAATAACTAATGTGCCCTCCAA 59.301 43.478 0.00 0.00 0.00 3.53
3677 4892 4.440112 GCAATAACTAATGTGCCCTCCAAC 60.440 45.833 0.00 0.00 0.00 3.77
3678 4893 2.969821 AACTAATGTGCCCTCCAACA 57.030 45.000 0.00 0.00 0.00 3.33
3679 4894 2.969821 ACTAATGTGCCCTCCAACAA 57.030 45.000 0.00 0.00 0.00 2.83
3680 4895 3.237268 ACTAATGTGCCCTCCAACAAA 57.763 42.857 0.00 0.00 0.00 2.83
3681 4896 2.890945 ACTAATGTGCCCTCCAACAAAC 59.109 45.455 0.00 0.00 0.00 2.93
3682 4897 1.786937 AATGTGCCCTCCAACAAACA 58.213 45.000 0.00 0.00 0.00 2.83
3683 4898 1.331214 ATGTGCCCTCCAACAAACAG 58.669 50.000 0.00 0.00 0.00 3.16
3684 4899 0.033601 TGTGCCCTCCAACAAACAGT 60.034 50.000 0.00 0.00 0.00 3.55
3685 4900 0.668535 GTGCCCTCCAACAAACAGTC 59.331 55.000 0.00 0.00 0.00 3.51
3686 4901 0.550914 TGCCCTCCAACAAACAGTCT 59.449 50.000 0.00 0.00 0.00 3.24
3687 4902 0.954452 GCCCTCCAACAAACAGTCTG 59.046 55.000 0.00 0.00 0.00 3.51
3688 4903 1.609208 CCCTCCAACAAACAGTCTGG 58.391 55.000 4.53 0.00 32.82 3.86
3689 4904 1.609208 CCTCCAACAAACAGTCTGGG 58.391 55.000 4.53 0.00 32.58 4.45
3690 4905 1.142870 CCTCCAACAAACAGTCTGGGA 59.857 52.381 4.53 0.00 32.58 4.37
3691 4906 2.422803 CCTCCAACAAACAGTCTGGGAA 60.423 50.000 4.53 0.00 32.58 3.97
3692 4907 2.880890 CTCCAACAAACAGTCTGGGAAG 59.119 50.000 4.53 0.00 32.58 3.46
3693 4908 1.338020 CCAACAAACAGTCTGGGAAGC 59.662 52.381 4.53 0.00 0.00 3.86
3694 4909 2.023673 CAACAAACAGTCTGGGAAGCA 58.976 47.619 4.53 0.00 0.00 3.91
3695 4910 2.426738 CAACAAACAGTCTGGGAAGCAA 59.573 45.455 4.53 0.00 0.00 3.91
3696 4911 2.024414 ACAAACAGTCTGGGAAGCAAC 58.976 47.619 4.53 0.00 0.00 4.17
3697 4912 1.338020 CAAACAGTCTGGGAAGCAACC 59.662 52.381 4.53 0.00 0.00 3.77
3698 4913 0.535102 AACAGTCTGGGAAGCAACCG 60.535 55.000 4.53 0.00 0.00 4.44
3699 4914 1.672356 CAGTCTGGGAAGCAACCGG 60.672 63.158 0.00 0.00 35.63 5.28
3700 4915 2.147387 AGTCTGGGAAGCAACCGGT 61.147 57.895 0.00 0.00 35.79 5.28
3701 4916 1.228154 GTCTGGGAAGCAACCGGTT 60.228 57.895 15.86 15.86 35.79 4.44
3702 4917 0.035739 GTCTGGGAAGCAACCGGTTA 59.964 55.000 21.79 0.80 35.79 2.85
3703 4918 0.766131 TCTGGGAAGCAACCGGTTAA 59.234 50.000 21.79 0.00 35.79 2.01
3704 4919 1.165270 CTGGGAAGCAACCGGTTAAG 58.835 55.000 21.79 10.17 31.57 1.85
3705 4920 0.891904 TGGGAAGCAACCGGTTAAGC 60.892 55.000 21.79 20.30 31.57 3.09
3706 4921 0.608308 GGGAAGCAACCGGTTAAGCT 60.608 55.000 22.75 22.75 39.37 3.74
3707 4922 1.339342 GGGAAGCAACCGGTTAAGCTA 60.339 52.381 26.97 0.00 36.07 3.32
3708 4923 2.429478 GGAAGCAACCGGTTAAGCTAA 58.571 47.619 26.97 0.00 36.07 3.09
3709 4924 2.815503 GGAAGCAACCGGTTAAGCTAAA 59.184 45.455 26.97 0.00 36.07 1.85
3710 4925 3.442625 GGAAGCAACCGGTTAAGCTAAAT 59.557 43.478 26.97 15.22 36.07 1.40
3711 4926 4.412207 GAAGCAACCGGTTAAGCTAAATG 58.588 43.478 26.97 11.98 36.07 2.32
3712 4927 2.163613 AGCAACCGGTTAAGCTAAATGC 59.836 45.455 25.94 19.64 43.29 3.56
3713 4928 2.094957 GCAACCGGTTAAGCTAAATGCA 60.095 45.455 21.79 0.00 45.94 3.96
3714 4929 3.612955 GCAACCGGTTAAGCTAAATGCAA 60.613 43.478 21.79 0.00 45.94 4.08
3715 4930 4.165779 CAACCGGTTAAGCTAAATGCAAG 58.834 43.478 21.79 0.00 45.94 4.01
3716 4931 3.681593 ACCGGTTAAGCTAAATGCAAGA 58.318 40.909 0.00 0.00 45.94 3.02
3717 4932 4.076394 ACCGGTTAAGCTAAATGCAAGAA 58.924 39.130 0.00 0.00 45.94 2.52
3718 4933 4.082949 ACCGGTTAAGCTAAATGCAAGAAC 60.083 41.667 0.00 0.00 45.94 3.01
3719 4934 4.412207 CGGTTAAGCTAAATGCAAGAACC 58.588 43.478 2.76 0.00 45.94 3.62
3720 4935 4.412207 GGTTAAGCTAAATGCAAGAACCG 58.588 43.478 0.00 0.00 45.94 4.44
3721 4936 2.636768 AAGCTAAATGCAAGAACCGC 57.363 45.000 0.00 0.00 45.94 5.68
3722 4937 0.811281 AGCTAAATGCAAGAACCGCC 59.189 50.000 0.00 0.00 45.94 6.13
3723 4938 0.179137 GCTAAATGCAAGAACCGCCC 60.179 55.000 0.00 0.00 42.31 6.13
3724 4939 0.455815 CTAAATGCAAGAACCGCCCC 59.544 55.000 0.00 0.00 0.00 5.80
3725 4940 0.251386 TAAATGCAAGAACCGCCCCA 60.251 50.000 0.00 0.00 0.00 4.96
3726 4941 1.118356 AAATGCAAGAACCGCCCCAA 61.118 50.000 0.00 0.00 0.00 4.12
3727 4942 1.118356 AATGCAAGAACCGCCCCAAA 61.118 50.000 0.00 0.00 0.00 3.28
3728 4943 1.815817 ATGCAAGAACCGCCCCAAAC 61.816 55.000 0.00 0.00 0.00 2.93
3729 4944 2.494530 GCAAGAACCGCCCCAAACA 61.495 57.895 0.00 0.00 0.00 2.83
3730 4945 2.022240 GCAAGAACCGCCCCAAACAA 62.022 55.000 0.00 0.00 0.00 2.83
3731 4946 0.461961 CAAGAACCGCCCCAAACAAA 59.538 50.000 0.00 0.00 0.00 2.83
3732 4947 1.069978 CAAGAACCGCCCCAAACAAAT 59.930 47.619 0.00 0.00 0.00 2.32
3733 4948 2.296073 AGAACCGCCCCAAACAAATA 57.704 45.000 0.00 0.00 0.00 1.40
3734 4949 2.599677 AGAACCGCCCCAAACAAATAA 58.400 42.857 0.00 0.00 0.00 1.40
3735 4950 3.169908 AGAACCGCCCCAAACAAATAAT 58.830 40.909 0.00 0.00 0.00 1.28
3736 4951 3.056179 AGAACCGCCCCAAACAAATAATG 60.056 43.478 0.00 0.00 0.00 1.90
3737 4952 2.530701 ACCGCCCCAAACAAATAATGA 58.469 42.857 0.00 0.00 0.00 2.57
3738 4953 2.900546 ACCGCCCCAAACAAATAATGAA 59.099 40.909 0.00 0.00 0.00 2.57
3739 4954 3.325135 ACCGCCCCAAACAAATAATGAAA 59.675 39.130 0.00 0.00 0.00 2.69
3740 4955 4.019771 ACCGCCCCAAACAAATAATGAAAT 60.020 37.500 0.00 0.00 0.00 2.17
3741 4956 4.940654 CCGCCCCAAACAAATAATGAAATT 59.059 37.500 0.00 0.00 41.28 1.82
3742 4957 6.109359 CCGCCCCAAACAAATAATGAAATTA 58.891 36.000 0.00 0.00 44.01 1.40
3743 4958 6.595716 CCGCCCCAAACAAATAATGAAATTAA 59.404 34.615 0.00 0.00 42.96 1.40
3744 4959 7.413548 CCGCCCCAAACAAATAATGAAATTAAC 60.414 37.037 0.00 0.00 42.96 2.01
3745 4960 7.413548 CGCCCCAAACAAATAATGAAATTAACC 60.414 37.037 0.00 0.00 42.96 2.85
3746 4961 7.391833 GCCCCAAACAAATAATGAAATTAACCA 59.608 33.333 0.00 0.00 42.96 3.67
3747 4962 9.289782 CCCCAAACAAATAATGAAATTAACCAA 57.710 29.630 0.00 0.00 42.96 3.67
3759 4974 7.979444 TGAAATTAACCAAAGAATCGTCTCT 57.021 32.000 0.00 0.00 30.70 3.10
3760 4975 8.029642 TGAAATTAACCAAAGAATCGTCTCTC 57.970 34.615 0.00 0.00 30.70 3.20
3761 4976 7.878127 TGAAATTAACCAAAGAATCGTCTCTCT 59.122 33.333 0.00 0.00 30.70 3.10
3762 4977 9.367444 GAAATTAACCAAAGAATCGTCTCTCTA 57.633 33.333 0.00 0.00 30.70 2.43
3763 4978 8.934507 AATTAACCAAAGAATCGTCTCTCTAG 57.065 34.615 0.00 0.00 30.70 2.43
3764 4979 4.379339 ACCAAAGAATCGTCTCTCTAGC 57.621 45.455 0.00 0.00 30.70 3.42
3765 4980 3.764434 ACCAAAGAATCGTCTCTCTAGCA 59.236 43.478 0.00 0.00 30.70 3.49
3766 4981 4.142271 ACCAAAGAATCGTCTCTCTAGCAG 60.142 45.833 0.00 0.00 30.70 4.24
3767 4982 4.097135 CCAAAGAATCGTCTCTCTAGCAGA 59.903 45.833 0.00 0.00 30.70 4.26
3768 4983 5.221224 CCAAAGAATCGTCTCTCTAGCAGAT 60.221 44.000 0.00 0.00 30.70 2.90
3769 4984 5.689383 AAGAATCGTCTCTCTAGCAGATC 57.311 43.478 0.00 0.00 30.70 2.75
3770 4985 4.713553 AGAATCGTCTCTCTAGCAGATCA 58.286 43.478 0.00 0.00 0.00 2.92
3771 4986 5.129634 AGAATCGTCTCTCTAGCAGATCAA 58.870 41.667 0.00 0.00 0.00 2.57
3772 4987 5.769662 AGAATCGTCTCTCTAGCAGATCAAT 59.230 40.000 0.00 0.00 0.00 2.57
3773 4988 5.627499 ATCGTCTCTCTAGCAGATCAATC 57.373 43.478 0.00 0.00 0.00 2.67
3774 4989 3.496507 TCGTCTCTCTAGCAGATCAATCG 59.503 47.826 0.00 0.00 0.00 3.34
3775 4990 3.496507 CGTCTCTCTAGCAGATCAATCGA 59.503 47.826 0.00 0.00 0.00 3.59
3776 4991 4.154015 CGTCTCTCTAGCAGATCAATCGAT 59.846 45.833 0.00 0.00 33.31 3.59
3787 5002 4.502171 GATCAATCGATCTCTCAGCTCA 57.498 45.455 0.00 0.00 44.10 4.26
3788 5003 3.986442 TCAATCGATCTCTCAGCTCAG 57.014 47.619 0.00 0.00 0.00 3.35
3789 5004 3.286353 TCAATCGATCTCTCAGCTCAGT 58.714 45.455 0.00 0.00 0.00 3.41
3790 5005 3.314913 TCAATCGATCTCTCAGCTCAGTC 59.685 47.826 0.00 0.00 0.00 3.51
3791 5006 2.708216 TCGATCTCTCAGCTCAGTCT 57.292 50.000 0.00 0.00 0.00 3.24
3792 5007 3.828875 TCGATCTCTCAGCTCAGTCTA 57.171 47.619 0.00 0.00 0.00 2.59
3793 5008 4.143986 TCGATCTCTCAGCTCAGTCTAA 57.856 45.455 0.00 0.00 0.00 2.10
3794 5009 4.713553 TCGATCTCTCAGCTCAGTCTAAT 58.286 43.478 0.00 0.00 0.00 1.73
3795 5010 4.754618 TCGATCTCTCAGCTCAGTCTAATC 59.245 45.833 0.00 0.00 0.00 1.75
3796 5011 4.083324 CGATCTCTCAGCTCAGTCTAATCC 60.083 50.000 0.00 0.00 0.00 3.01
3797 5012 4.518278 TCTCTCAGCTCAGTCTAATCCT 57.482 45.455 0.00 0.00 0.00 3.24
3798 5013 4.206375 TCTCTCAGCTCAGTCTAATCCTG 58.794 47.826 0.00 0.00 0.00 3.86
3799 5014 3.953612 CTCTCAGCTCAGTCTAATCCTGT 59.046 47.826 0.00 0.00 0.00 4.00
3800 5015 3.951037 TCTCAGCTCAGTCTAATCCTGTC 59.049 47.826 0.00 0.00 0.00 3.51
3801 5016 3.698539 CTCAGCTCAGTCTAATCCTGTCA 59.301 47.826 0.00 0.00 0.00 3.58
3802 5017 4.089361 TCAGCTCAGTCTAATCCTGTCAA 58.911 43.478 0.00 0.00 0.00 3.18
3803 5018 4.081972 TCAGCTCAGTCTAATCCTGTCAAC 60.082 45.833 0.00 0.00 0.00 3.18
3804 5019 3.119316 AGCTCAGTCTAATCCTGTCAACG 60.119 47.826 0.00 0.00 0.00 4.10
3805 5020 3.367498 GCTCAGTCTAATCCTGTCAACGT 60.367 47.826 0.00 0.00 0.00 3.99
3806 5021 4.142447 GCTCAGTCTAATCCTGTCAACGTA 60.142 45.833 0.00 0.00 0.00 3.57
3807 5022 5.621555 GCTCAGTCTAATCCTGTCAACGTAA 60.622 44.000 0.00 0.00 0.00 3.18
3808 5023 6.525578 TCAGTCTAATCCTGTCAACGTAAT 57.474 37.500 0.00 0.00 0.00 1.89
3809 5024 6.561614 TCAGTCTAATCCTGTCAACGTAATC 58.438 40.000 0.00 0.00 0.00 1.75
3810 5025 6.152154 TCAGTCTAATCCTGTCAACGTAATCA 59.848 38.462 0.00 0.00 0.00 2.57
3811 5026 6.811665 CAGTCTAATCCTGTCAACGTAATCAA 59.188 38.462 0.00 0.00 0.00 2.57
3812 5027 7.009631 CAGTCTAATCCTGTCAACGTAATCAAG 59.990 40.741 0.00 0.00 0.00 3.02
3813 5028 4.946784 AATCCTGTCAACGTAATCAAGC 57.053 40.909 0.00 0.00 0.00 4.01
3814 5029 3.394674 TCCTGTCAACGTAATCAAGCA 57.605 42.857 0.00 0.00 0.00 3.91
3815 5030 3.064207 TCCTGTCAACGTAATCAAGCAC 58.936 45.455 0.00 0.00 0.00 4.40
3816 5031 2.159627 CCTGTCAACGTAATCAAGCACC 59.840 50.000 0.00 0.00 0.00 5.01
3817 5032 2.147958 TGTCAACGTAATCAAGCACCC 58.852 47.619 0.00 0.00 0.00 4.61
3818 5033 2.224426 TGTCAACGTAATCAAGCACCCT 60.224 45.455 0.00 0.00 0.00 4.34
3819 5034 2.812011 GTCAACGTAATCAAGCACCCTT 59.188 45.455 0.00 0.00 0.00 3.95
3820 5035 3.071479 TCAACGTAATCAAGCACCCTTC 58.929 45.455 0.00 0.00 0.00 3.46
3821 5036 3.074412 CAACGTAATCAAGCACCCTTCT 58.926 45.455 0.00 0.00 0.00 2.85
3822 5037 3.418684 ACGTAATCAAGCACCCTTCTT 57.581 42.857 0.00 0.00 0.00 2.52
3823 5038 3.335579 ACGTAATCAAGCACCCTTCTTC 58.664 45.455 0.00 0.00 0.00 2.87
3824 5039 3.244422 ACGTAATCAAGCACCCTTCTTCA 60.244 43.478 0.00 0.00 0.00 3.02
3825 5040 3.751175 CGTAATCAAGCACCCTTCTTCAA 59.249 43.478 0.00 0.00 0.00 2.69
3826 5041 4.378459 CGTAATCAAGCACCCTTCTTCAAC 60.378 45.833 0.00 0.00 0.00 3.18
3827 5042 1.981256 TCAAGCACCCTTCTTCAACC 58.019 50.000 0.00 0.00 0.00 3.77
3828 5043 0.593128 CAAGCACCCTTCTTCAACCG 59.407 55.000 0.00 0.00 0.00 4.44
3829 5044 1.172812 AAGCACCCTTCTTCAACCGC 61.173 55.000 0.00 0.00 0.00 5.68
3830 5045 2.966309 GCACCCTTCTTCAACCGCG 61.966 63.158 0.00 0.00 0.00 6.46
3831 5046 1.301401 CACCCTTCTTCAACCGCGA 60.301 57.895 8.23 0.00 0.00 5.87
3832 5047 1.004918 ACCCTTCTTCAACCGCGAG 60.005 57.895 8.23 0.00 0.00 5.03
3833 5048 2.391389 CCCTTCTTCAACCGCGAGC 61.391 63.158 8.23 0.00 0.00 5.03
3834 5049 1.374758 CCTTCTTCAACCGCGAGCT 60.375 57.895 8.23 0.00 0.00 4.09
3835 5050 1.355066 CCTTCTTCAACCGCGAGCTC 61.355 60.000 8.23 2.73 0.00 4.09
3836 5051 0.667487 CTTCTTCAACCGCGAGCTCA 60.667 55.000 15.40 0.00 0.00 4.26
3837 5052 0.037326 TTCTTCAACCGCGAGCTCAT 60.037 50.000 15.40 0.00 0.00 2.90
3838 5053 0.458543 TCTTCAACCGCGAGCTCATC 60.459 55.000 15.40 3.61 0.00 2.92
3839 5054 0.737367 CTTCAACCGCGAGCTCATCA 60.737 55.000 15.40 0.00 0.00 3.07
3840 5055 0.737367 TTCAACCGCGAGCTCATCAG 60.737 55.000 15.40 1.37 0.00 2.90
3841 5056 2.169789 CAACCGCGAGCTCATCAGG 61.170 63.158 15.40 12.74 0.00 3.86
3842 5057 4.521062 ACCGCGAGCTCATCAGGC 62.521 66.667 15.40 7.51 0.00 4.85
3843 5058 4.218578 CCGCGAGCTCATCAGGCT 62.219 66.667 15.40 0.00 43.26 4.58
3844 5059 2.960659 CGCGAGCTCATCAGGCTG 60.961 66.667 15.40 8.58 40.40 4.85
3845 5060 3.270839 GCGAGCTCATCAGGCTGC 61.271 66.667 15.40 2.12 40.40 5.25
3846 5061 2.500165 CGAGCTCATCAGGCTGCT 59.500 61.111 15.40 2.13 40.40 4.24
3847 5062 1.883544 CGAGCTCATCAGGCTGCTG 60.884 63.158 15.40 12.01 40.40 4.41
3848 5063 2.124653 AGCTCATCAGGCTGCTGC 60.125 61.111 13.33 7.10 38.73 5.25
3849 5064 3.574445 GCTCATCAGGCTGCTGCG 61.574 66.667 13.33 8.66 40.82 5.18
3850 5065 2.186125 CTCATCAGGCTGCTGCGA 59.814 61.111 13.33 2.57 40.82 5.10
3851 5066 2.125391 TCATCAGGCTGCTGCGAC 60.125 61.111 13.33 0.00 40.82 5.19
3852 5067 3.561213 CATCAGGCTGCTGCGACG 61.561 66.667 10.34 0.00 40.82 5.12
3876 5091 3.998672 GCCCGAGACCACCACGAA 61.999 66.667 0.00 0.00 0.00 3.85
3877 5092 2.048503 CCCGAGACCACCACGAAC 60.049 66.667 0.00 0.00 0.00 3.95
3878 5093 2.732016 CCGAGACCACCACGAACA 59.268 61.111 0.00 0.00 0.00 3.18
3879 5094 1.663702 CCGAGACCACCACGAACAC 60.664 63.158 0.00 0.00 0.00 3.32
3880 5095 1.362717 CGAGACCACCACGAACACT 59.637 57.895 0.00 0.00 0.00 3.55
3881 5096 0.663568 CGAGACCACCACGAACACTC 60.664 60.000 0.00 0.00 0.00 3.51
3882 5097 0.319641 GAGACCACCACGAACACTCC 60.320 60.000 0.00 0.00 0.00 3.85
3883 5098 1.301479 GACCACCACGAACACTCCC 60.301 63.158 0.00 0.00 0.00 4.30
3884 5099 2.032071 CCACCACGAACACTCCCC 59.968 66.667 0.00 0.00 0.00 4.81
3885 5100 2.357034 CACCACGAACACTCCCCG 60.357 66.667 0.00 0.00 0.00 5.73
3886 5101 3.622826 ACCACGAACACTCCCCGG 61.623 66.667 0.00 0.00 0.00 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.161855 TCATTGGTCAAGTGCACCATC 58.838 47.619 14.63 0.00 43.66 3.51
36 37 4.811555 TTCACCATCAACTCTTTTGTCG 57.188 40.909 0.00 0.00 0.00 4.35
40 41 9.586435 CTAAACTTTTTCACCATCAACTCTTTT 57.414 29.630 0.00 0.00 0.00 2.27
78 79 9.403583 CCTAGATAGAGAATAGAGATAACCACC 57.596 40.741 0.00 0.00 0.00 4.61
166 169 0.385390 GGTGACAAAGCCCACTGTTG 59.615 55.000 0.00 0.00 33.99 3.33
195 198 5.639506 CGCTATCGGGATCAAATCTAACATT 59.360 40.000 0.00 0.00 0.00 2.71
212 215 4.719369 GCCCCGCTACCGCTATCG 62.719 72.222 0.00 0.00 0.00 2.92
251 254 5.703130 GCTAACAACAATAAATTTGCCCCAA 59.297 36.000 0.00 0.00 0.00 4.12
286 289 1.614903 CAATGTTCAAAGCCAGCTCCA 59.385 47.619 0.00 0.00 0.00 3.86
348 351 1.462616 TTGGCAATCCATCGACAAGG 58.537 50.000 0.00 0.00 43.05 3.61
382 385 1.299976 GACCTCCTTGCAATCCGGT 59.700 57.895 11.95 11.95 0.00 5.28
383 386 0.107017 ATGACCTCCTTGCAATCCGG 60.107 55.000 0.00 0.00 0.00 5.14
384 387 1.303309 GATGACCTCCTTGCAATCCG 58.697 55.000 0.00 0.00 0.00 4.18
439 443 2.355132 CAGAGATTGGAGCATTCACAGC 59.645 50.000 0.00 0.00 0.00 4.40
442 446 2.606725 CGTCAGAGATTGGAGCATTCAC 59.393 50.000 0.00 0.00 0.00 3.18
459 463 4.764679 AGCTTTTATGCAAATGTCGTCA 57.235 36.364 0.00 0.00 34.99 4.35
488 492 6.377146 GCAAAAATGATAAGGTACTCTCCCAA 59.623 38.462 0.00 0.00 38.49 4.12
489 493 5.885912 GCAAAAATGATAAGGTACTCTCCCA 59.114 40.000 0.00 0.00 38.49 4.37
490 494 5.299531 GGCAAAAATGATAAGGTACTCTCCC 59.700 44.000 0.00 0.00 38.49 4.30
491 495 6.122964 AGGCAAAAATGATAAGGTACTCTCC 58.877 40.000 0.00 0.00 38.49 3.71
494 498 7.013369 CCCTAAGGCAAAAATGATAAGGTACTC 59.987 40.741 0.00 0.00 38.49 2.59
505 509 7.175990 TGAACTAGTAACCCTAAGGCAAAAATG 59.824 37.037 0.00 0.00 36.11 2.32
506 510 7.235804 TGAACTAGTAACCCTAAGGCAAAAAT 58.764 34.615 0.00 0.00 36.11 1.82
510 514 6.670902 AGTATGAACTAGTAACCCTAAGGCAA 59.329 38.462 0.00 0.00 32.28 4.52
549 553 5.061853 CCAAAACATCTGATCGAGGATCAT 58.938 41.667 8.60 0.00 46.16 2.45
558 562 3.949754 TCATCAGCCCAAAACATCTGATC 59.050 43.478 0.00 0.00 42.46 2.92
561 565 3.367703 GGTTCATCAGCCCAAAACATCTG 60.368 47.826 0.00 0.00 0.00 2.90
570 574 2.046023 CAGCGGTTCATCAGCCCA 60.046 61.111 0.00 0.00 37.96 5.36
574 578 1.800805 ACAACTCAGCGGTTCATCAG 58.199 50.000 0.00 0.00 0.00 2.90
575 579 3.610040 ATACAACTCAGCGGTTCATCA 57.390 42.857 0.00 0.00 0.00 3.07
584 588 5.551760 ACATAGCAACAATACAACTCAGC 57.448 39.130 0.00 0.00 0.00 4.26
592 596 7.910162 CACTCACCAATTACATAGCAACAATAC 59.090 37.037 0.00 0.00 0.00 1.89
596 600 5.312895 ACACTCACCAATTACATAGCAACA 58.687 37.500 0.00 0.00 0.00 3.33
616 620 9.543018 GCTTTATCACTCAAATAACACTTACAC 57.457 33.333 0.00 0.00 0.00 2.90
629 633 2.760634 TGGCGAGCTTTATCACTCAA 57.239 45.000 0.00 0.00 32.98 3.02
631 635 4.346129 CATTTTGGCGAGCTTTATCACTC 58.654 43.478 0.00 0.00 0.00 3.51
633 637 3.438360 CCATTTTGGCGAGCTTTATCAC 58.562 45.455 0.00 0.00 0.00 3.06
721 727 9.297037 ACTACCAAACTGAACTTATAATGCTTT 57.703 29.630 0.00 0.00 0.00 3.51
743 749 6.581166 GCAATTGTTTGTTGGTAGCTTACTAC 59.419 38.462 7.40 0.00 40.33 2.73
744 750 6.263392 TGCAATTGTTTGTTGGTAGCTTACTA 59.737 34.615 7.40 0.00 35.17 1.82
745 751 5.068460 TGCAATTGTTTGTTGGTAGCTTACT 59.932 36.000 7.40 0.00 35.17 2.24
746 752 5.285651 TGCAATTGTTTGTTGGTAGCTTAC 58.714 37.500 7.40 0.00 35.17 2.34
747 753 5.521906 TGCAATTGTTTGTTGGTAGCTTA 57.478 34.783 7.40 0.00 35.17 3.09
748 754 4.399004 TGCAATTGTTTGTTGGTAGCTT 57.601 36.364 7.40 0.00 35.17 3.74
749 755 4.399004 TTGCAATTGTTTGTTGGTAGCT 57.601 36.364 7.40 0.00 35.17 3.32
750 756 5.476752 TTTTGCAATTGTTTGTTGGTAGC 57.523 34.783 7.40 0.00 35.17 3.58
751 757 7.301068 TCTTTTTGCAATTGTTTGTTGGTAG 57.699 32.000 7.40 0.00 35.17 3.18
884 893 2.693864 ACTGGGAGGGATGGGCTG 60.694 66.667 0.00 0.00 0.00 4.85
911 925 1.819288 CCAGCTGGAAGAAGACGACTA 59.181 52.381 29.88 0.00 37.39 2.59
1182 1210 1.416772 GGTAGGGTAAGACATGGGAGC 59.583 57.143 0.00 0.00 0.00 4.70
1189 1217 1.568504 CAGGCAGGTAGGGTAAGACA 58.431 55.000 0.00 0.00 0.00 3.41
1193 1221 2.326428 GATAGCAGGCAGGTAGGGTAA 58.674 52.381 0.00 0.00 32.98 2.85
1194 1222 1.482553 GGATAGCAGGCAGGTAGGGTA 60.483 57.143 0.00 0.00 32.98 3.69
1215 1245 3.082055 GAGGAGGAACCCGGGGAC 61.082 72.222 27.92 17.97 40.05 4.46
1216 1246 3.607299 TGAGGAGGAACCCGGGGA 61.607 66.667 27.92 0.00 40.05 4.81
1217 1247 3.400054 GTGAGGAGGAACCCGGGG 61.400 72.222 27.92 12.73 40.05 5.73
1219 1249 1.597461 GAAGTGAGGAGGAACCCGG 59.403 63.158 0.00 0.00 40.05 5.73
1220 1250 1.215647 CGAAGTGAGGAGGAACCCG 59.784 63.158 0.00 0.00 40.05 5.28
1221 1251 1.079057 GCGAAGTGAGGAGGAACCC 60.079 63.158 0.00 0.00 40.05 4.11
1222 1252 1.446272 CGCGAAGTGAGGAGGAACC 60.446 63.158 0.00 0.00 43.07 3.62
1244 1274 1.965754 GAGAGAGCAAGCCCCATCGT 61.966 60.000 0.00 0.00 0.00 3.73
1343 1373 0.591170 CACCGCCGAATTGTGAACTT 59.409 50.000 0.00 0.00 31.66 2.66
1423 1454 3.374678 GGTCGCCATTTTGTACGGATAAA 59.625 43.478 0.00 0.00 0.00 1.40
1465 1496 1.667236 TAAATCAGGCGCATGGTCAG 58.333 50.000 23.25 0.00 0.00 3.51
1507 1538 0.249114 GCTGCGGCTACTCTACCTTC 60.249 60.000 11.21 0.00 35.22 3.46
1545 1576 2.058595 GGGACGCCTGGAAGCTCTA 61.059 63.158 0.00 0.00 0.00 2.43
1721 1758 7.912250 GCAGTAAAACCATGAGATTACAAGATG 59.088 37.037 13.38 6.95 32.10 2.90
1752 1789 7.670605 TTGGCATATACTAGTTCTAACCAGT 57.329 36.000 0.00 0.00 35.16 4.00
1785 1831 4.018960 ACAAGCTGGAACCAATCTATCTGT 60.019 41.667 0.00 0.00 0.00 3.41
1801 1847 4.690184 TGATGCAACATCTAACAAGCTG 57.310 40.909 8.87 0.00 0.00 4.24
1833 1880 9.211485 CCGATCTGGTAAGTTTTTAGAACTTTA 57.789 33.333 6.21 0.00 40.58 1.85
1834 1881 8.095937 CCGATCTGGTAAGTTTTTAGAACTTT 57.904 34.615 6.21 0.00 40.58 2.66
1835 1882 7.668525 CCGATCTGGTAAGTTTTTAGAACTT 57.331 36.000 6.17 6.17 42.53 2.66
1857 1904 2.729882 CAGTTTAGAACGTCAAGGACCG 59.270 50.000 0.00 0.00 36.23 4.79
1867 1916 9.130312 GATATTACCATAGCTCAGTTTAGAACG 57.870 37.037 0.00 0.00 36.23 3.95
1885 1934 7.121315 ACTTTGAGGAGCAAACAAGATATTACC 59.879 37.037 0.00 0.00 41.37 2.85
1959 2012 6.542370 ACATGATACAAACAGGTATGTAAGGC 59.458 38.462 0.00 0.00 39.29 4.35
1960 2013 7.768582 TCACATGATACAAACAGGTATGTAAGG 59.231 37.037 0.00 0.00 39.29 2.69
1966 2019 6.095440 GGCTTTCACATGATACAAACAGGTAT 59.905 38.462 0.00 0.00 36.70 2.73
1972 2025 5.048782 TCACTGGCTTTCACATGATACAAAC 60.049 40.000 0.00 0.00 0.00 2.93
1983 2036 4.641989 ACATGGATATTCACTGGCTTTCAC 59.358 41.667 0.00 0.00 0.00 3.18
1987 2040 7.560991 TCAAAATACATGGATATTCACTGGCTT 59.439 33.333 0.00 0.00 0.00 4.35
1988 2041 7.062322 TCAAAATACATGGATATTCACTGGCT 58.938 34.615 0.00 0.00 0.00 4.75
2398 2472 7.194607 ACAAGCGAATGTATATCATTTGAGG 57.805 36.000 14.43 8.21 45.82 3.86
2565 2656 5.981088 ATACCAGAATGAAAATGCACACA 57.019 34.783 0.00 0.00 39.69 3.72
2651 2744 4.808414 ACGAATGAGAGTGAATCCAGAA 57.192 40.909 0.00 0.00 0.00 3.02
2670 2765 5.180492 TGAAATTACCTTAGCCTGAACAACG 59.820 40.000 0.00 0.00 0.00 4.10
2777 2872 1.806542 CAGTGCTCCGTACTTTGCAAT 59.193 47.619 0.00 2.44 37.17 3.56
2782 2877 0.756903 ACACCAGTGCTCCGTACTTT 59.243 50.000 0.00 0.00 0.00 2.66
2926 3021 0.605589 AGTCTCTCTCCAGGCAAACG 59.394 55.000 0.00 0.00 0.00 3.60
2927 3022 1.899142 AGAGTCTCTCTCCAGGCAAAC 59.101 52.381 0.00 0.00 43.71 2.93
2928 3023 2.301296 CAAGAGTCTCTCTCCAGGCAAA 59.699 50.000 1.96 0.00 40.28 3.68
2929 3024 1.898472 CAAGAGTCTCTCTCCAGGCAA 59.102 52.381 1.96 0.00 40.28 4.52
2930 3025 1.554836 CAAGAGTCTCTCTCCAGGCA 58.445 55.000 1.96 0.00 40.28 4.75
2931 3026 0.823460 CCAAGAGTCTCTCTCCAGGC 59.177 60.000 1.96 0.00 40.28 4.85
2932 3027 2.230130 ACCAAGAGTCTCTCTCCAGG 57.770 55.000 1.96 3.64 40.28 4.45
2933 3028 2.687935 GCTACCAAGAGTCTCTCTCCAG 59.312 54.545 1.96 0.51 40.28 3.86
2934 3029 2.041755 TGCTACCAAGAGTCTCTCTCCA 59.958 50.000 1.96 0.00 40.28 3.86
2935 3030 2.687935 CTGCTACCAAGAGTCTCTCTCC 59.312 54.545 1.96 0.00 40.28 3.71
2936 3031 3.616219 TCTGCTACCAAGAGTCTCTCTC 58.384 50.000 1.96 0.00 40.28 3.20
2937 3032 3.620488 CTCTGCTACCAAGAGTCTCTCT 58.380 50.000 1.96 0.00 43.37 3.10
2938 3033 2.687935 CCTCTGCTACCAAGAGTCTCTC 59.312 54.545 1.96 0.00 0.00 3.20
2939 3034 2.310349 TCCTCTGCTACCAAGAGTCTCT 59.690 50.000 0.00 0.00 0.00 3.10
2940 3035 2.729194 TCCTCTGCTACCAAGAGTCTC 58.271 52.381 0.00 0.00 0.00 3.36
2941 3036 2.909504 TCCTCTGCTACCAAGAGTCT 57.090 50.000 0.00 0.00 0.00 3.24
2942 3037 3.093057 TCTTCCTCTGCTACCAAGAGTC 58.907 50.000 0.00 0.00 0.00 3.36
2943 3038 3.096092 CTCTTCCTCTGCTACCAAGAGT 58.904 50.000 0.00 0.00 36.74 3.24
2944 3039 3.360867 TCTCTTCCTCTGCTACCAAGAG 58.639 50.000 0.00 0.00 40.95 2.85
2945 3040 3.458044 TCTCTTCCTCTGCTACCAAGA 57.542 47.619 0.00 0.00 0.00 3.02
2955 3050 6.951198 TGTAACTTCAGAGATTCTCTTCCTCT 59.049 38.462 13.61 2.18 38.99 3.69
3097 3203 8.164070 ACAGTACAGAATCAAAAGGGTTTCTAT 58.836 33.333 0.00 0.00 0.00 1.98
3169 3276 1.063469 CATTTGGGGCGACAACGATAC 59.937 52.381 0.00 0.00 42.66 2.24
3182 3289 5.637006 TCTGATTTACGGTTTCATTTGGG 57.363 39.130 0.00 0.00 0.00 4.12
3218 3325 6.934048 TTACATTTGCATCAATGTATCCGA 57.066 33.333 19.62 6.93 30.71 4.55
3219 3326 7.166307 CAGTTTACATTTGCATCAATGTATCCG 59.834 37.037 19.62 9.14 30.71 4.18
3220 3327 8.190122 TCAGTTTACATTTGCATCAATGTATCC 58.810 33.333 19.62 14.38 30.71 2.59
3221 3328 9.229784 CTCAGTTTACATTTGCATCAATGTATC 57.770 33.333 19.62 16.07 30.71 2.24
3222 3329 7.703621 GCTCAGTTTACATTTGCATCAATGTAT 59.296 33.333 19.62 7.21 30.71 2.29
3283 3390 0.179004 TGCTGTTTGGTACACCCAGG 60.179 55.000 0.00 0.00 46.31 4.45
3292 3399 1.406539 CTTGCTGAGTTGCTGTTTGGT 59.593 47.619 0.00 0.00 0.00 3.67
3299 3406 2.954318 ACAATGTTCTTGCTGAGTTGCT 59.046 40.909 0.00 0.00 0.00 3.91
3300 3407 3.047796 CACAATGTTCTTGCTGAGTTGC 58.952 45.455 0.00 0.00 0.00 4.17
3301 3408 4.297299 ACACAATGTTCTTGCTGAGTTG 57.703 40.909 0.00 0.00 0.00 3.16
3302 3409 4.989279 AACACAATGTTCTTGCTGAGTT 57.011 36.364 0.00 0.00 35.27 3.01
3303 3410 4.989279 AAACACAATGTTCTTGCTGAGT 57.011 36.364 0.00 0.00 40.14 3.41
3304 3411 5.806502 TCAAAAACACAATGTTCTTGCTGAG 59.193 36.000 3.40 0.00 40.14 3.35
3305 3412 5.718146 TCAAAAACACAATGTTCTTGCTGA 58.282 33.333 3.40 0.00 40.14 4.26
3306 3413 6.406093 TTCAAAAACACAATGTTCTTGCTG 57.594 33.333 3.40 0.00 40.14 4.41
3368 3475 7.791590 TGCAAATTCGAAAATCGTCAAAATTTC 59.208 29.630 0.00 0.00 41.35 2.17
3379 3486 4.442733 TCCACGTTTGCAAATTCGAAAATC 59.557 37.500 23.86 5.13 0.00 2.17
3432 4643 1.298413 CCTGCTCGATCGTGTACGG 60.298 63.158 15.94 11.26 40.29 4.02
3433 4644 1.298413 CCCTGCTCGATCGTGTACG 60.298 63.158 15.94 6.18 41.45 3.67
3434 4645 0.172803 AACCCTGCTCGATCGTGTAC 59.827 55.000 15.94 3.87 0.00 2.90
3435 4646 0.172578 CAACCCTGCTCGATCGTGTA 59.827 55.000 15.94 11.44 0.00 2.90
3436 4647 1.079819 CAACCCTGCTCGATCGTGT 60.080 57.895 15.94 1.56 0.00 4.49
3437 4648 0.179100 ATCAACCCTGCTCGATCGTG 60.179 55.000 15.94 14.19 0.00 4.35
3438 4649 0.537188 AATCAACCCTGCTCGATCGT 59.463 50.000 15.94 0.00 0.00 3.73
3442 4653 2.559698 TTCAAATCAACCCTGCTCGA 57.440 45.000 0.00 0.00 0.00 4.04
3466 4677 8.221766 CGGAAAGAAATGTTGACTTTACTACTC 58.778 37.037 0.00 0.00 33.75 2.59
3525 4739 4.760878 TGCAATACTTACGGCACATCTAA 58.239 39.130 0.00 0.00 0.00 2.10
3543 4757 7.823799 TCAATGACATAAGACTTAGATGTGCAA 59.176 33.333 8.08 0.00 33.99 4.08
3554 4768 5.687730 CGCGTAAGATCAATGACATAAGACT 59.312 40.000 0.00 0.00 43.02 3.24
3555 4769 5.685954 TCGCGTAAGATCAATGACATAAGAC 59.314 40.000 5.77 0.00 43.02 3.01
3556 4770 5.827666 TCGCGTAAGATCAATGACATAAGA 58.172 37.500 5.77 0.00 43.02 2.10
3557 4771 6.510746 TTCGCGTAAGATCAATGACATAAG 57.489 37.500 5.77 0.00 43.02 1.73
3558 4772 6.895607 TTTCGCGTAAGATCAATGACATAA 57.104 33.333 5.77 0.00 43.02 1.90
3559 4773 6.895607 TTTTCGCGTAAGATCAATGACATA 57.104 33.333 5.77 0.00 43.02 2.29
3560 4774 5.794687 TTTTCGCGTAAGATCAATGACAT 57.205 34.783 5.77 0.00 43.02 3.06
3561 4775 5.794687 ATTTTCGCGTAAGATCAATGACA 57.205 34.783 5.77 0.00 43.02 3.58
3562 4776 7.370836 CACTAATTTTCGCGTAAGATCAATGAC 59.629 37.037 5.77 0.00 43.02 3.06
3563 4777 7.064134 ACACTAATTTTCGCGTAAGATCAATGA 59.936 33.333 5.77 0.00 43.02 2.57
3564 4778 7.162546 CACACTAATTTTCGCGTAAGATCAATG 59.837 37.037 5.77 1.41 43.02 2.82
3565 4779 7.180079 CACACTAATTTTCGCGTAAGATCAAT 58.820 34.615 5.77 0.00 43.02 2.57
3566 4780 6.530567 CACACTAATTTTCGCGTAAGATCAA 58.469 36.000 5.77 0.00 43.02 2.57
3567 4781 5.445407 GCACACTAATTTTCGCGTAAGATCA 60.445 40.000 5.77 0.00 43.02 2.92
3568 4782 4.956184 GCACACTAATTTTCGCGTAAGATC 59.044 41.667 5.77 0.00 43.02 2.75
3569 4783 4.491924 CGCACACTAATTTTCGCGTAAGAT 60.492 41.667 5.77 0.00 43.02 2.40
3570 4784 3.181538 CGCACACTAATTTTCGCGTAAGA 60.182 43.478 5.77 0.00 43.02 2.10
3571 4785 3.081445 CGCACACTAATTTTCGCGTAAG 58.919 45.455 5.77 0.00 38.03 2.34
3572 4786 2.730404 TCGCACACTAATTTTCGCGTAA 59.270 40.909 5.77 0.00 43.02 3.18
3573 4787 2.326664 TCGCACACTAATTTTCGCGTA 58.673 42.857 5.77 0.00 43.02 4.42
3574 4788 1.141645 TCGCACACTAATTTTCGCGT 58.858 45.000 5.77 0.00 43.02 6.01
3575 4789 2.220315 TTCGCACACTAATTTTCGCG 57.780 45.000 0.00 0.00 43.80 5.87
3576 4790 4.851558 AGAAATTCGCACACTAATTTTCGC 59.148 37.500 0.00 0.00 35.87 4.70
3618 4832 5.241403 AGTGACACAATCAAGTATGGGAA 57.759 39.130 8.59 0.00 39.72 3.97
3620 4834 6.406370 TCTAAGTGACACAATCAAGTATGGG 58.594 40.000 8.59 0.00 39.72 4.00
3643 4858 9.173939 GCACATTAGTTATTGCACATCTAAATC 57.826 33.333 0.00 0.00 34.97 2.17
3644 4859 8.137437 GGCACATTAGTTATTGCACATCTAAAT 58.863 33.333 0.00 0.00 36.66 1.40
3645 4860 7.416213 GGGCACATTAGTTATTGCACATCTAAA 60.416 37.037 0.00 0.00 38.32 1.85
3646 4861 6.039270 GGGCACATTAGTTATTGCACATCTAA 59.961 38.462 0.00 0.00 38.32 2.10
3647 4862 5.530915 GGGCACATTAGTTATTGCACATCTA 59.469 40.000 0.00 0.00 38.32 1.98
3648 4863 4.339247 GGGCACATTAGTTATTGCACATCT 59.661 41.667 0.00 0.00 38.32 2.90
3671 4886 2.638480 TCCCAGACTGTTTGTTGGAG 57.362 50.000 0.93 0.00 32.38 3.86
3672 4887 2.930950 CTTCCCAGACTGTTTGTTGGA 58.069 47.619 0.93 0.00 32.38 3.53
3673 4888 1.338020 GCTTCCCAGACTGTTTGTTGG 59.662 52.381 0.93 0.00 0.00 3.77
3674 4889 2.023673 TGCTTCCCAGACTGTTTGTTG 58.976 47.619 0.93 0.00 0.00 3.33
3675 4890 2.427095 GTTGCTTCCCAGACTGTTTGTT 59.573 45.455 0.93 0.00 0.00 2.83
3676 4891 2.024414 GTTGCTTCCCAGACTGTTTGT 58.976 47.619 0.93 0.00 0.00 2.83
3677 4892 1.338020 GGTTGCTTCCCAGACTGTTTG 59.662 52.381 0.93 0.00 0.00 2.93
3678 4893 1.692411 GGTTGCTTCCCAGACTGTTT 58.308 50.000 0.93 0.00 0.00 2.83
3679 4894 0.535102 CGGTTGCTTCCCAGACTGTT 60.535 55.000 0.93 0.00 0.00 3.16
3680 4895 1.071471 CGGTTGCTTCCCAGACTGT 59.929 57.895 0.93 0.00 0.00 3.55
3681 4896 1.672356 CCGGTTGCTTCCCAGACTG 60.672 63.158 0.00 0.00 0.00 3.51
3682 4897 1.705997 AACCGGTTGCTTCCCAGACT 61.706 55.000 21.56 0.00 0.00 3.24
3683 4898 0.035739 TAACCGGTTGCTTCCCAGAC 59.964 55.000 30.08 0.00 0.00 3.51
3684 4899 0.766131 TTAACCGGTTGCTTCCCAGA 59.234 50.000 30.08 2.96 0.00 3.86
3685 4900 1.165270 CTTAACCGGTTGCTTCCCAG 58.835 55.000 30.08 9.68 0.00 4.45
3686 4901 0.891904 GCTTAACCGGTTGCTTCCCA 60.892 55.000 30.08 4.64 0.00 4.37
3687 4902 0.608308 AGCTTAACCGGTTGCTTCCC 60.608 55.000 30.08 11.42 30.96 3.97
3688 4903 2.103537 TAGCTTAACCGGTTGCTTCC 57.896 50.000 30.28 14.92 37.02 3.46
3689 4904 4.412207 CATTTAGCTTAACCGGTTGCTTC 58.588 43.478 30.28 16.97 37.02 3.86
3690 4905 3.366985 GCATTTAGCTTAACCGGTTGCTT 60.367 43.478 30.28 14.92 41.15 3.91
3691 4906 2.163613 GCATTTAGCTTAACCGGTTGCT 59.836 45.455 28.72 28.72 41.15 3.91
3692 4907 2.094957 TGCATTTAGCTTAACCGGTTGC 60.095 45.455 30.08 24.21 45.94 4.17
3693 4908 3.840890 TGCATTTAGCTTAACCGGTTG 57.159 42.857 30.08 15.18 45.94 3.77
3694 4909 4.076394 TCTTGCATTTAGCTTAACCGGTT 58.924 39.130 25.64 25.64 45.94 4.44
3695 4910 3.681593 TCTTGCATTTAGCTTAACCGGT 58.318 40.909 0.00 0.00 45.94 5.28
3696 4911 4.412207 GTTCTTGCATTTAGCTTAACCGG 58.588 43.478 0.00 0.00 45.94 5.28
3697 4912 4.412207 GGTTCTTGCATTTAGCTTAACCG 58.588 43.478 0.00 0.00 45.94 4.44
3698 4913 4.412207 CGGTTCTTGCATTTAGCTTAACC 58.588 43.478 0.00 0.00 45.94 2.85
3699 4914 3.851969 GCGGTTCTTGCATTTAGCTTAAC 59.148 43.478 0.00 0.00 45.94 2.01
3700 4915 3.119637 GGCGGTTCTTGCATTTAGCTTAA 60.120 43.478 0.00 0.00 45.94 1.85
3701 4916 2.422127 GGCGGTTCTTGCATTTAGCTTA 59.578 45.455 0.00 0.00 45.94 3.09
3702 4917 1.202348 GGCGGTTCTTGCATTTAGCTT 59.798 47.619 0.00 0.00 45.94 3.74
3703 4918 0.811281 GGCGGTTCTTGCATTTAGCT 59.189 50.000 0.00 0.00 45.94 3.32
3704 4919 0.179137 GGGCGGTTCTTGCATTTAGC 60.179 55.000 0.00 0.00 45.96 3.09
3705 4920 0.455815 GGGGCGGTTCTTGCATTTAG 59.544 55.000 0.00 0.00 0.00 1.85
3706 4921 0.251386 TGGGGCGGTTCTTGCATTTA 60.251 50.000 0.00 0.00 0.00 1.40
3707 4922 1.118356 TTGGGGCGGTTCTTGCATTT 61.118 50.000 0.00 0.00 0.00 2.32
3708 4923 1.118356 TTTGGGGCGGTTCTTGCATT 61.118 50.000 0.00 0.00 0.00 3.56
3709 4924 1.532794 TTTGGGGCGGTTCTTGCAT 60.533 52.632 0.00 0.00 0.00 3.96
3710 4925 2.123683 TTTGGGGCGGTTCTTGCA 60.124 55.556 0.00 0.00 0.00 4.08
3711 4926 2.022240 TTGTTTGGGGCGGTTCTTGC 62.022 55.000 0.00 0.00 0.00 4.01
3712 4927 0.461961 TTTGTTTGGGGCGGTTCTTG 59.538 50.000 0.00 0.00 0.00 3.02
3713 4928 1.419381 ATTTGTTTGGGGCGGTTCTT 58.581 45.000 0.00 0.00 0.00 2.52
3714 4929 2.296073 TATTTGTTTGGGGCGGTTCT 57.704 45.000 0.00 0.00 0.00 3.01
3715 4930 3.056465 TCATTATTTGTTTGGGGCGGTTC 60.056 43.478 0.00 0.00 0.00 3.62
3716 4931 2.900546 TCATTATTTGTTTGGGGCGGTT 59.099 40.909 0.00 0.00 0.00 4.44
3717 4932 2.530701 TCATTATTTGTTTGGGGCGGT 58.469 42.857 0.00 0.00 0.00 5.68
3718 4933 3.601443 TTCATTATTTGTTTGGGGCGG 57.399 42.857 0.00 0.00 0.00 6.13
3719 4934 7.413548 GGTTAATTTCATTATTTGTTTGGGGCG 60.414 37.037 0.00 0.00 0.00 6.13
3720 4935 7.391833 TGGTTAATTTCATTATTTGTTTGGGGC 59.608 33.333 0.00 0.00 0.00 5.80
3721 4936 8.854614 TGGTTAATTTCATTATTTGTTTGGGG 57.145 30.769 0.00 0.00 0.00 4.96
3733 4948 9.014297 AGAGACGATTCTTTGGTTAATTTCATT 57.986 29.630 0.00 0.00 29.47 2.57
3734 4949 8.567285 AGAGACGATTCTTTGGTTAATTTCAT 57.433 30.769 0.00 0.00 29.47 2.57
3735 4950 7.878127 AGAGAGACGATTCTTTGGTTAATTTCA 59.122 33.333 0.00 0.00 29.47 2.69
3736 4951 8.257830 AGAGAGACGATTCTTTGGTTAATTTC 57.742 34.615 0.00 0.00 29.47 2.17
3737 4952 9.372369 CTAGAGAGACGATTCTTTGGTTAATTT 57.628 33.333 0.00 0.00 29.47 1.82
3738 4953 7.492994 GCTAGAGAGACGATTCTTTGGTTAATT 59.507 37.037 0.00 0.00 29.47 1.40
3739 4954 6.981559 GCTAGAGAGACGATTCTTTGGTTAAT 59.018 38.462 0.00 0.00 29.47 1.40
3740 4955 6.071560 TGCTAGAGAGACGATTCTTTGGTTAA 60.072 38.462 0.00 0.00 29.47 2.01
3741 4956 5.417894 TGCTAGAGAGACGATTCTTTGGTTA 59.582 40.000 0.00 0.00 29.47 2.85
3742 4957 4.220821 TGCTAGAGAGACGATTCTTTGGTT 59.779 41.667 0.00 0.00 29.47 3.67
3743 4958 3.764434 TGCTAGAGAGACGATTCTTTGGT 59.236 43.478 0.00 0.00 29.47 3.67
3744 4959 4.097135 TCTGCTAGAGAGACGATTCTTTGG 59.903 45.833 0.00 0.00 29.47 3.28
3745 4960 5.242069 TCTGCTAGAGAGACGATTCTTTG 57.758 43.478 0.00 0.00 29.47 2.77
3746 4961 5.592282 TGATCTGCTAGAGAGACGATTCTTT 59.408 40.000 0.00 0.00 32.80 2.52
3747 4962 5.129634 TGATCTGCTAGAGAGACGATTCTT 58.870 41.667 0.00 0.00 32.80 2.52
3748 4963 4.713553 TGATCTGCTAGAGAGACGATTCT 58.286 43.478 0.00 0.00 32.80 2.40
3749 4964 5.431420 TTGATCTGCTAGAGAGACGATTC 57.569 43.478 0.00 0.00 32.80 2.52
3750 4965 5.334802 CGATTGATCTGCTAGAGAGACGATT 60.335 44.000 0.00 0.00 32.80 3.34
3751 4966 4.154015 CGATTGATCTGCTAGAGAGACGAT 59.846 45.833 0.00 0.00 32.80 3.73
3752 4967 3.496507 CGATTGATCTGCTAGAGAGACGA 59.503 47.826 0.00 0.00 32.80 4.20
3753 4968 3.496507 TCGATTGATCTGCTAGAGAGACG 59.503 47.826 0.00 0.00 32.80 4.18
3754 4969 5.627499 ATCGATTGATCTGCTAGAGAGAC 57.373 43.478 0.00 0.00 32.80 3.36
3755 4970 5.878332 GATCGATTGATCTGCTAGAGAGA 57.122 43.478 14.80 0.00 46.22 3.10
3767 4982 3.890756 ACTGAGCTGAGAGATCGATTGAT 59.109 43.478 7.36 0.00 32.29 2.57
3768 4983 3.286353 ACTGAGCTGAGAGATCGATTGA 58.714 45.455 7.36 0.00 32.29 2.57
3769 4984 3.316029 AGACTGAGCTGAGAGATCGATTG 59.684 47.826 7.36 0.00 32.29 2.67
3770 4985 3.554934 AGACTGAGCTGAGAGATCGATT 58.445 45.455 7.36 0.00 32.29 3.34
3771 4986 3.213206 AGACTGAGCTGAGAGATCGAT 57.787 47.619 7.36 0.00 32.29 3.59
3772 4987 2.708216 AGACTGAGCTGAGAGATCGA 57.292 50.000 7.36 0.00 32.29 3.59
3773 4988 4.083324 GGATTAGACTGAGCTGAGAGATCG 60.083 50.000 7.36 0.00 32.29 3.69
3774 4989 5.048504 CAGGATTAGACTGAGCTGAGAGATC 60.049 48.000 7.36 4.51 38.20 2.75
3775 4990 4.828939 CAGGATTAGACTGAGCTGAGAGAT 59.171 45.833 7.36 0.00 38.20 2.75
3776 4991 4.206375 CAGGATTAGACTGAGCTGAGAGA 58.794 47.826 7.36 0.00 38.20 3.10
3777 4992 3.953612 ACAGGATTAGACTGAGCTGAGAG 59.046 47.826 7.36 0.00 39.24 3.20
3778 4993 3.951037 GACAGGATTAGACTGAGCTGAGA 59.049 47.826 7.36 0.00 39.24 3.27
3779 4994 3.698539 TGACAGGATTAGACTGAGCTGAG 59.301 47.826 0.00 0.00 39.24 3.35
3780 4995 3.701664 TGACAGGATTAGACTGAGCTGA 58.298 45.455 0.00 0.00 39.24 4.26
3781 4996 4.180057 GTTGACAGGATTAGACTGAGCTG 58.820 47.826 0.00 0.00 39.24 4.24
3782 4997 3.119316 CGTTGACAGGATTAGACTGAGCT 60.119 47.826 0.00 0.00 39.24 4.09
3783 4998 3.182967 CGTTGACAGGATTAGACTGAGC 58.817 50.000 0.00 0.00 39.24 4.26
3784 4999 4.442375 ACGTTGACAGGATTAGACTGAG 57.558 45.455 0.00 0.00 39.24 3.35
3785 5000 5.970317 TTACGTTGACAGGATTAGACTGA 57.030 39.130 0.00 0.00 39.24 3.41
3786 5001 6.330278 TGATTACGTTGACAGGATTAGACTG 58.670 40.000 0.00 0.00 41.64 3.51
3787 5002 6.525578 TGATTACGTTGACAGGATTAGACT 57.474 37.500 0.00 0.00 0.00 3.24
3788 5003 6.237861 GCTTGATTACGTTGACAGGATTAGAC 60.238 42.308 0.00 0.00 0.00 2.59
3789 5004 5.810587 GCTTGATTACGTTGACAGGATTAGA 59.189 40.000 0.00 0.00 0.00 2.10
3790 5005 5.580691 TGCTTGATTACGTTGACAGGATTAG 59.419 40.000 0.00 0.00 0.00 1.73
3791 5006 5.350365 GTGCTTGATTACGTTGACAGGATTA 59.650 40.000 0.00 0.00 0.00 1.75
3792 5007 4.154195 GTGCTTGATTACGTTGACAGGATT 59.846 41.667 0.00 0.00 0.00 3.01
3793 5008 3.684788 GTGCTTGATTACGTTGACAGGAT 59.315 43.478 0.00 0.00 0.00 3.24
3794 5009 3.064207 GTGCTTGATTACGTTGACAGGA 58.936 45.455 0.00 0.00 0.00 3.86
3795 5010 2.159627 GGTGCTTGATTACGTTGACAGG 59.840 50.000 0.00 0.00 0.00 4.00
3796 5011 2.159627 GGGTGCTTGATTACGTTGACAG 59.840 50.000 0.00 0.00 0.00 3.51
3797 5012 2.147958 GGGTGCTTGATTACGTTGACA 58.852 47.619 0.00 0.00 0.00 3.58
3798 5013 2.423577 AGGGTGCTTGATTACGTTGAC 58.576 47.619 0.00 0.00 0.00 3.18
3799 5014 2.851263 AGGGTGCTTGATTACGTTGA 57.149 45.000 0.00 0.00 0.00 3.18
3800 5015 3.074412 AGAAGGGTGCTTGATTACGTTG 58.926 45.455 0.00 0.00 0.00 4.10
3801 5016 3.418684 AGAAGGGTGCTTGATTACGTT 57.581 42.857 0.00 0.00 0.00 3.99
3802 5017 3.244422 TGAAGAAGGGTGCTTGATTACGT 60.244 43.478 0.00 0.00 0.00 3.57
3803 5018 3.334691 TGAAGAAGGGTGCTTGATTACG 58.665 45.455 0.00 0.00 0.00 3.18
3804 5019 4.082733 GGTTGAAGAAGGGTGCTTGATTAC 60.083 45.833 0.00 0.00 0.00 1.89
3805 5020 4.079253 GGTTGAAGAAGGGTGCTTGATTA 58.921 43.478 0.00 0.00 0.00 1.75
3806 5021 2.893489 GGTTGAAGAAGGGTGCTTGATT 59.107 45.455 0.00 0.00 0.00 2.57
3807 5022 2.519013 GGTTGAAGAAGGGTGCTTGAT 58.481 47.619 0.00 0.00 0.00 2.57
3808 5023 1.813862 CGGTTGAAGAAGGGTGCTTGA 60.814 52.381 0.00 0.00 0.00 3.02
3809 5024 0.593128 CGGTTGAAGAAGGGTGCTTG 59.407 55.000 0.00 0.00 0.00 4.01
3810 5025 1.172812 GCGGTTGAAGAAGGGTGCTT 61.173 55.000 0.00 0.00 0.00 3.91
3811 5026 1.600916 GCGGTTGAAGAAGGGTGCT 60.601 57.895 0.00 0.00 0.00 4.40
3812 5027 2.954611 GCGGTTGAAGAAGGGTGC 59.045 61.111 0.00 0.00 0.00 5.01
3813 5028 1.291877 CTCGCGGTTGAAGAAGGGTG 61.292 60.000 6.13 0.00 0.00 4.61
3814 5029 1.004918 CTCGCGGTTGAAGAAGGGT 60.005 57.895 6.13 0.00 0.00 4.34
3815 5030 2.391389 GCTCGCGGTTGAAGAAGGG 61.391 63.158 6.13 0.00 0.00 3.95
3816 5031 1.355066 GAGCTCGCGGTTGAAGAAGG 61.355 60.000 6.13 0.00 0.00 3.46
3817 5032 0.667487 TGAGCTCGCGGTTGAAGAAG 60.667 55.000 6.13 0.00 0.00 2.85
3818 5033 0.037326 ATGAGCTCGCGGTTGAAGAA 60.037 50.000 6.13 0.00 0.00 2.52
3819 5034 0.458543 GATGAGCTCGCGGTTGAAGA 60.459 55.000 6.13 0.00 0.00 2.87
3820 5035 0.737367 TGATGAGCTCGCGGTTGAAG 60.737 55.000 6.13 0.00 0.00 3.02
3821 5036 0.737367 CTGATGAGCTCGCGGTTGAA 60.737 55.000 6.13 0.00 0.00 2.69
3822 5037 1.153765 CTGATGAGCTCGCGGTTGA 60.154 57.895 6.13 0.00 0.00 3.18
3823 5038 2.169789 CCTGATGAGCTCGCGGTTG 61.170 63.158 6.13 0.00 0.00 3.77
3824 5039 2.185350 CCTGATGAGCTCGCGGTT 59.815 61.111 6.13 0.00 0.00 4.44
3825 5040 4.521062 GCCTGATGAGCTCGCGGT 62.521 66.667 6.13 0.00 0.00 5.68
3826 5041 4.218578 AGCCTGATGAGCTCGCGG 62.219 66.667 6.13 8.66 34.91 6.46
3827 5042 2.960659 CAGCCTGATGAGCTCGCG 60.961 66.667 9.64 0.00 38.95 5.87
3828 5043 3.270839 GCAGCCTGATGAGCTCGC 61.271 66.667 9.64 5.80 38.95 5.03
3829 5044 1.883544 CAGCAGCCTGATGAGCTCG 60.884 63.158 3.29 0.00 41.77 5.03
3830 5045 2.181521 GCAGCAGCCTGATGAGCTC 61.182 63.158 15.27 6.82 41.77 4.09
3831 5046 2.124653 GCAGCAGCCTGATGAGCT 60.125 61.111 15.27 0.00 41.77 4.09
3832 5047 3.574445 CGCAGCAGCCTGATGAGC 61.574 66.667 15.27 0.00 41.77 4.26
3833 5048 2.172372 GTCGCAGCAGCCTGATGAG 61.172 63.158 15.27 11.20 41.77 2.90
3834 5049 2.125391 GTCGCAGCAGCCTGATGA 60.125 61.111 15.27 0.00 41.77 2.92
3835 5050 3.561213 CGTCGCAGCAGCCTGATG 61.561 66.667 5.40 5.40 41.77 3.07
3859 5074 3.998672 TTCGTGGTGGTCTCGGGC 61.999 66.667 0.00 0.00 0.00 6.13
3860 5075 2.048503 GTTCGTGGTGGTCTCGGG 60.049 66.667 0.00 0.00 0.00 5.14
3861 5076 1.663702 GTGTTCGTGGTGGTCTCGG 60.664 63.158 0.00 0.00 0.00 4.63
3862 5077 0.663568 GAGTGTTCGTGGTGGTCTCG 60.664 60.000 0.00 0.00 0.00 4.04
3863 5078 0.319641 GGAGTGTTCGTGGTGGTCTC 60.320 60.000 0.00 0.00 0.00 3.36
3864 5079 1.746517 GGAGTGTTCGTGGTGGTCT 59.253 57.895 0.00 0.00 0.00 3.85
3865 5080 1.301479 GGGAGTGTTCGTGGTGGTC 60.301 63.158 0.00 0.00 0.00 4.02
3866 5081 2.814835 GGGGAGTGTTCGTGGTGGT 61.815 63.158 0.00 0.00 0.00 4.16
3867 5082 2.032071 GGGGAGTGTTCGTGGTGG 59.968 66.667 0.00 0.00 0.00 4.61
3868 5083 2.357034 CGGGGAGTGTTCGTGGTG 60.357 66.667 0.00 0.00 0.00 4.17
3869 5084 3.622826 CCGGGGAGTGTTCGTGGT 61.623 66.667 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.