Multiple sequence alignment - TraesCS3D01G082200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G082200 chr3D 100.000 6413 0 0 1 6413 41677252 41670840 0.000000e+00 11843.0
1 TraesCS3D01G082200 chr3B 94.274 5239 230 30 1216 6413 64705925 64700716 0.000000e+00 7949.0
2 TraesCS3D01G082200 chr3B 83.605 799 87 27 387 1168 64706692 64705921 0.000000e+00 710.0
3 TraesCS3D01G082200 chr3B 95.918 49 2 0 339 387 64707067 64707019 5.330000e-11 80.5
4 TraesCS3D01G082200 chr3A 94.739 3973 142 31 2450 6389 53186148 53182210 0.000000e+00 6117.0
5 TraesCS3D01G082200 chr3A 92.533 3375 161 38 3077 6413 53043331 53040010 0.000000e+00 4752.0
6 TraesCS3D01G082200 chr3A 88.915 2165 142 44 349 2495 53188229 53186145 0.000000e+00 2579.0
7 TraesCS3D01G082200 chr3A 86.434 258 22 5 339 587 53189182 53188929 2.950000e-68 270.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G082200 chr3D 41670840 41677252 6412 True 11843.000000 11843 100.000000 1 6413 1 chr3D.!!$R1 6412
1 TraesCS3D01G082200 chr3B 64700716 64707067 6351 True 2913.166667 7949 91.265667 339 6413 3 chr3B.!!$R1 6074
2 TraesCS3D01G082200 chr3A 53040010 53043331 3321 True 4752.000000 4752 92.533000 3077 6413 1 chr3A.!!$R1 3336
3 TraesCS3D01G082200 chr3A 53182210 53189182 6972 True 2988.666667 6117 90.029333 339 6389 3 chr3A.!!$R2 6050

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
209 210 0.034767 TGGTACGTGGATCTCGACCT 60.035 55.000 15.17 0.00 33.35 3.85 F
1118 2413 0.104986 ATCCATCCCTCATCCGTCCA 60.105 55.000 0.00 0.00 0.00 4.02 F
1119 2414 0.104986 TCCATCCCTCATCCGTCCAT 60.105 55.000 0.00 0.00 0.00 3.41 F
1190 2489 0.173708 CAGGGAGAGCCTGTTCGTAC 59.826 60.000 0.00 0.00 0.00 3.67 F
1199 2498 0.242825 CCTGTTCGTACGCCTTCTCA 59.757 55.000 11.24 2.52 0.00 3.27 F
1299 2598 0.323542 ACCGGTGACCAGGAGAGTAG 60.324 60.000 6.12 0.00 0.00 2.57 F
1988 3290 0.451792 CTTTGAGAAGCGCGTTGAGC 60.452 55.000 8.43 0.00 43.95 4.26 F
3164 4510 0.685097 TTATGACAGGGGCGCCTATC 59.315 55.000 28.56 22.06 0.00 2.08 F
4680 6032 1.485066 GATCCCGCCCTCTGTTCTTTA 59.515 52.381 0.00 0.00 0.00 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1219 2518 0.030101 CGGTTTTCGCCTGCAAAAGA 59.970 50.000 0.00 0.0 0.00 2.52 R
1988 3290 0.460987 CTGCTAGAAGTTCCAGGGCG 60.461 60.000 0.00 0.0 0.00 6.13 R
2193 3495 1.064166 CATCTGAACTGGGAAGGCCAT 60.064 52.381 5.01 0.0 35.15 4.40 R
2212 3514 1.754226 AGCCTTTTGTTTTTCCGCTCA 59.246 42.857 0.00 0.0 0.00 4.26 R
2909 4255 3.446161 TCATACGTGTAACCTCTTCCTGG 59.554 47.826 0.00 0.0 0.00 4.45 R
3230 4578 1.410004 ACTCGGTCTCAAACACTGGA 58.590 50.000 0.00 0.0 0.00 3.86 R
3713 5061 1.507141 CGCGGGCAGTCAAGAAGTTT 61.507 55.000 0.00 0.0 0.00 2.66 R
4962 6314 0.725686 CTGATGGCTGCGAAGAACTG 59.274 55.000 0.00 0.0 0.00 3.16 R
5706 7080 0.106708 AGCACGGAGACAGAAAGCAA 59.893 50.000 0.00 0.0 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.776616 CTCAGACTCCAAGGGCATC 57.223 57.895 0.00 0.00 0.00 3.91
19 20 0.907486 CTCAGACTCCAAGGGCATCA 59.093 55.000 0.00 0.00 0.00 3.07
20 21 0.615331 TCAGACTCCAAGGGCATCAC 59.385 55.000 0.00 0.00 0.00 3.06
21 22 0.325933 CAGACTCCAAGGGCATCACA 59.674 55.000 0.00 0.00 0.00 3.58
22 23 0.326264 AGACTCCAAGGGCATCACAC 59.674 55.000 0.00 0.00 0.00 3.82
23 24 1.003355 ACTCCAAGGGCATCACACG 60.003 57.895 0.00 0.00 0.00 4.49
24 25 2.359850 TCCAAGGGCATCACACGC 60.360 61.111 0.00 0.00 0.00 5.34
25 26 2.672651 CCAAGGGCATCACACGCA 60.673 61.111 0.00 0.00 0.00 5.24
26 27 2.267351 CCAAGGGCATCACACGCAA 61.267 57.895 0.00 0.00 0.00 4.85
44 45 5.607119 CGCAAGTAACAACCAAATCTACT 57.393 39.130 0.00 0.00 0.00 2.57
45 46 5.382303 CGCAAGTAACAACCAAATCTACTG 58.618 41.667 0.00 0.00 0.00 2.74
46 47 5.049680 CGCAAGTAACAACCAAATCTACTGT 60.050 40.000 0.00 0.00 0.00 3.55
47 48 6.512741 CGCAAGTAACAACCAAATCTACTGTT 60.513 38.462 0.00 0.00 34.71 3.16
48 49 7.200455 GCAAGTAACAACCAAATCTACTGTTT 58.800 34.615 0.00 0.00 32.69 2.83
49 50 7.704899 GCAAGTAACAACCAAATCTACTGTTTT 59.295 33.333 0.00 0.00 32.69 2.43
52 53 9.398538 AGTAACAACCAAATCTACTGTTTTACA 57.601 29.630 0.00 0.00 32.69 2.41
56 57 9.528018 ACAACCAAATCTACTGTTTTACAATTG 57.472 29.630 3.24 3.24 0.00 2.32
57 58 9.528018 CAACCAAATCTACTGTTTTACAATTGT 57.472 29.630 16.68 16.68 0.00 2.71
58 59 9.744468 AACCAAATCTACTGTTTTACAATTGTC 57.256 29.630 15.85 0.75 0.00 3.18
59 60 9.131791 ACCAAATCTACTGTTTTACAATTGTCT 57.868 29.630 15.85 0.00 0.00 3.41
60 61 9.612620 CCAAATCTACTGTTTTACAATTGTCTC 57.387 33.333 15.85 4.97 0.00 3.36
64 65 8.149973 TCTACTGTTTTACAATTGTCTCAACC 57.850 34.615 15.85 0.26 0.00 3.77
65 66 6.767524 ACTGTTTTACAATTGTCTCAACCA 57.232 33.333 15.85 4.93 0.00 3.67
66 67 7.164230 ACTGTTTTACAATTGTCTCAACCAA 57.836 32.000 15.85 0.00 0.00 3.67
67 68 7.257722 ACTGTTTTACAATTGTCTCAACCAAG 58.742 34.615 15.85 12.10 0.00 3.61
68 69 6.039616 TGTTTTACAATTGTCTCAACCAAGC 58.960 36.000 15.85 1.42 0.00 4.01
69 70 5.843673 TTTACAATTGTCTCAACCAAGCA 57.156 34.783 15.85 0.00 0.00 3.91
70 71 3.996150 ACAATTGTCTCAACCAAGCAG 57.004 42.857 4.92 0.00 0.00 4.24
71 72 3.554934 ACAATTGTCTCAACCAAGCAGA 58.445 40.909 4.92 0.00 0.00 4.26
72 73 3.953612 ACAATTGTCTCAACCAAGCAGAA 59.046 39.130 4.92 0.00 0.00 3.02
73 74 4.037208 ACAATTGTCTCAACCAAGCAGAAG 59.963 41.667 4.92 0.00 0.00 2.85
74 75 3.281727 TTGTCTCAACCAAGCAGAAGT 57.718 42.857 0.00 0.00 0.00 3.01
75 76 3.281727 TGTCTCAACCAAGCAGAAGTT 57.718 42.857 0.00 0.00 0.00 2.66
76 77 3.206150 TGTCTCAACCAAGCAGAAGTTC 58.794 45.455 0.00 0.00 0.00 3.01
77 78 3.206150 GTCTCAACCAAGCAGAAGTTCA 58.794 45.455 5.50 0.00 0.00 3.18
78 79 3.002759 GTCTCAACCAAGCAGAAGTTCAC 59.997 47.826 5.50 0.00 0.00 3.18
79 80 2.945008 CTCAACCAAGCAGAAGTTCACA 59.055 45.455 5.50 0.00 0.00 3.58
80 81 3.554934 TCAACCAAGCAGAAGTTCACAT 58.445 40.909 5.50 0.00 0.00 3.21
81 82 3.565482 TCAACCAAGCAGAAGTTCACATC 59.435 43.478 5.50 0.00 0.00 3.06
82 83 3.213206 ACCAAGCAGAAGTTCACATCA 57.787 42.857 5.50 0.00 0.00 3.07
83 84 3.554934 ACCAAGCAGAAGTTCACATCAA 58.445 40.909 5.50 0.00 0.00 2.57
84 85 4.147321 ACCAAGCAGAAGTTCACATCAAT 58.853 39.130 5.50 0.00 0.00 2.57
85 86 4.586001 ACCAAGCAGAAGTTCACATCAATT 59.414 37.500 5.50 0.00 0.00 2.32
86 87 5.069516 ACCAAGCAGAAGTTCACATCAATTT 59.930 36.000 5.50 0.00 0.00 1.82
87 88 5.987347 CCAAGCAGAAGTTCACATCAATTTT 59.013 36.000 5.50 0.00 0.00 1.82
88 89 6.145048 CCAAGCAGAAGTTCACATCAATTTTC 59.855 38.462 5.50 0.00 0.00 2.29
89 90 6.645790 AGCAGAAGTTCACATCAATTTTCT 57.354 33.333 5.50 0.00 0.00 2.52
90 91 6.675987 AGCAGAAGTTCACATCAATTTTCTC 58.324 36.000 5.50 0.00 0.00 2.87
91 92 6.263842 AGCAGAAGTTCACATCAATTTTCTCA 59.736 34.615 5.50 0.00 0.00 3.27
92 93 7.039923 AGCAGAAGTTCACATCAATTTTCTCAT 60.040 33.333 5.50 0.00 0.00 2.90
93 94 8.239314 GCAGAAGTTCACATCAATTTTCTCATA 58.761 33.333 5.50 0.00 0.00 2.15
94 95 9.770503 CAGAAGTTCACATCAATTTTCTCATAG 57.229 33.333 5.50 0.00 0.00 2.23
95 96 8.457261 AGAAGTTCACATCAATTTTCTCATAGC 58.543 33.333 5.50 0.00 0.00 2.97
96 97 7.934855 AGTTCACATCAATTTTCTCATAGCT 57.065 32.000 0.00 0.00 0.00 3.32
97 98 7.983307 AGTTCACATCAATTTTCTCATAGCTC 58.017 34.615 0.00 0.00 0.00 4.09
98 99 7.609146 AGTTCACATCAATTTTCTCATAGCTCA 59.391 33.333 0.00 0.00 0.00 4.26
99 100 7.312657 TCACATCAATTTTCTCATAGCTCAC 57.687 36.000 0.00 0.00 0.00 3.51
100 101 6.036408 TCACATCAATTTTCTCATAGCTCACG 59.964 38.462 0.00 0.00 0.00 4.35
101 102 5.295292 ACATCAATTTTCTCATAGCTCACGG 59.705 40.000 0.00 0.00 0.00 4.94
102 103 3.623060 TCAATTTTCTCATAGCTCACGGC 59.377 43.478 0.00 0.00 42.19 5.68
112 113 3.571741 GCTCACGGCTCACTATACC 57.428 57.895 0.00 0.00 38.06 2.73
113 114 1.033574 GCTCACGGCTCACTATACCT 58.966 55.000 0.00 0.00 38.06 3.08
114 115 1.409427 GCTCACGGCTCACTATACCTT 59.591 52.381 0.00 0.00 38.06 3.50
115 116 2.159085 GCTCACGGCTCACTATACCTTT 60.159 50.000 0.00 0.00 38.06 3.11
116 117 3.679083 GCTCACGGCTCACTATACCTTTT 60.679 47.826 0.00 0.00 38.06 2.27
117 118 4.504858 CTCACGGCTCACTATACCTTTTT 58.495 43.478 0.00 0.00 0.00 1.94
118 119 4.501071 TCACGGCTCACTATACCTTTTTC 58.499 43.478 0.00 0.00 0.00 2.29
119 120 4.020928 TCACGGCTCACTATACCTTTTTCA 60.021 41.667 0.00 0.00 0.00 2.69
120 121 4.330074 CACGGCTCACTATACCTTTTTCAG 59.670 45.833 0.00 0.00 0.00 3.02
121 122 4.222145 ACGGCTCACTATACCTTTTTCAGA 59.778 41.667 0.00 0.00 0.00 3.27
122 123 5.175859 CGGCTCACTATACCTTTTTCAGAA 58.824 41.667 0.00 0.00 0.00 3.02
123 124 5.817816 CGGCTCACTATACCTTTTTCAGAAT 59.182 40.000 0.00 0.00 0.00 2.40
124 125 6.018669 CGGCTCACTATACCTTTTTCAGAATC 60.019 42.308 0.00 0.00 0.00 2.52
125 126 6.261158 GGCTCACTATACCTTTTTCAGAATCC 59.739 42.308 0.00 0.00 0.00 3.01
126 127 6.823689 GCTCACTATACCTTTTTCAGAATCCA 59.176 38.462 0.00 0.00 0.00 3.41
127 128 7.201652 GCTCACTATACCTTTTTCAGAATCCAC 60.202 40.741 0.00 0.00 0.00 4.02
128 129 7.685481 TCACTATACCTTTTTCAGAATCCACA 58.315 34.615 0.00 0.00 0.00 4.17
129 130 8.160765 TCACTATACCTTTTTCAGAATCCACAA 58.839 33.333 0.00 0.00 0.00 3.33
130 131 8.237267 CACTATACCTTTTTCAGAATCCACAAC 58.763 37.037 0.00 0.00 0.00 3.32
131 132 7.942341 ACTATACCTTTTTCAGAATCCACAACA 59.058 33.333 0.00 0.00 0.00 3.33
132 133 5.262588 ACCTTTTTCAGAATCCACAACAC 57.737 39.130 0.00 0.00 0.00 3.32
133 134 4.709397 ACCTTTTTCAGAATCCACAACACA 59.291 37.500 0.00 0.00 0.00 3.72
134 135 5.186797 ACCTTTTTCAGAATCCACAACACAA 59.813 36.000 0.00 0.00 0.00 3.33
135 136 5.519927 CCTTTTTCAGAATCCACAACACAAC 59.480 40.000 0.00 0.00 0.00 3.32
136 137 4.647424 TTTCAGAATCCACAACACAACC 57.353 40.909 0.00 0.00 0.00 3.77
137 138 3.289407 TCAGAATCCACAACACAACCA 57.711 42.857 0.00 0.00 0.00 3.67
138 139 3.625853 TCAGAATCCACAACACAACCAA 58.374 40.909 0.00 0.00 0.00 3.67
139 140 4.019858 TCAGAATCCACAACACAACCAAA 58.980 39.130 0.00 0.00 0.00 3.28
140 141 4.648762 TCAGAATCCACAACACAACCAAAT 59.351 37.500 0.00 0.00 0.00 2.32
141 142 5.830457 TCAGAATCCACAACACAACCAAATA 59.170 36.000 0.00 0.00 0.00 1.40
142 143 5.920273 CAGAATCCACAACACAACCAAATAC 59.080 40.000 0.00 0.00 0.00 1.89
143 144 5.596361 AGAATCCACAACACAACCAAATACA 59.404 36.000 0.00 0.00 0.00 2.29
144 145 5.860941 ATCCACAACACAACCAAATACAA 57.139 34.783 0.00 0.00 0.00 2.41
145 146 5.255710 TCCACAACACAACCAAATACAAG 57.744 39.130 0.00 0.00 0.00 3.16
146 147 4.950475 TCCACAACACAACCAAATACAAGA 59.050 37.500 0.00 0.00 0.00 3.02
147 148 5.596361 TCCACAACACAACCAAATACAAGAT 59.404 36.000 0.00 0.00 0.00 2.40
148 149 6.097554 TCCACAACACAACCAAATACAAGATT 59.902 34.615 0.00 0.00 0.00 2.40
149 150 6.760770 CCACAACACAACCAAATACAAGATTT 59.239 34.615 0.00 0.00 0.00 2.17
150 151 7.923344 CCACAACACAACCAAATACAAGATTTA 59.077 33.333 0.00 0.00 0.00 1.40
151 152 9.307121 CACAACACAACCAAATACAAGATTTAA 57.693 29.630 0.00 0.00 0.00 1.52
152 153 9.308318 ACAACACAACCAAATACAAGATTTAAC 57.692 29.630 0.00 0.00 0.00 2.01
153 154 9.307121 CAACACAACCAAATACAAGATTTAACA 57.693 29.630 0.00 0.00 0.00 2.41
154 155 9.877178 AACACAACCAAATACAAGATTTAACAA 57.123 25.926 0.00 0.00 0.00 2.83
155 156 9.877178 ACACAACCAAATACAAGATTTAACAAA 57.123 25.926 0.00 0.00 0.00 2.83
157 158 9.320352 ACAACCAAATACAAGATTTAACAAACC 57.680 29.630 0.00 0.00 0.00 3.27
158 159 9.541143 CAACCAAATACAAGATTTAACAAACCT 57.459 29.630 0.00 0.00 0.00 3.50
159 160 9.758651 AACCAAATACAAGATTTAACAAACCTC 57.241 29.630 0.00 0.00 0.00 3.85
160 161 9.143155 ACCAAATACAAGATTTAACAAACCTCT 57.857 29.630 0.00 0.00 0.00 3.69
161 162 9.981114 CCAAATACAAGATTTAACAAACCTCTT 57.019 29.630 0.00 0.00 0.00 2.85
175 176 8.463930 AACAAACCTCTTGATTATGTTTCAGA 57.536 30.769 0.00 0.00 0.00 3.27
176 177 8.641498 ACAAACCTCTTGATTATGTTTCAGAT 57.359 30.769 0.00 0.00 0.00 2.90
177 178 9.739276 ACAAACCTCTTGATTATGTTTCAGATA 57.261 29.630 0.00 0.00 0.00 1.98
179 180 9.965902 AAACCTCTTGATTATGTTTCAGATAGT 57.034 29.630 0.00 0.00 0.00 2.12
180 181 9.965902 AACCTCTTGATTATGTTTCAGATAGTT 57.034 29.630 0.00 0.00 0.00 2.24
181 182 9.965902 ACCTCTTGATTATGTTTCAGATAGTTT 57.034 29.630 0.00 0.00 0.00 2.66
185 186 9.282247 CTTGATTATGTTTCAGATAGTTTGTGC 57.718 33.333 0.00 0.00 0.00 4.57
186 187 8.334263 TGATTATGTTTCAGATAGTTTGTGCA 57.666 30.769 0.00 0.00 0.00 4.57
187 188 8.236586 TGATTATGTTTCAGATAGTTTGTGCAC 58.763 33.333 10.75 10.75 0.00 4.57
188 189 7.744087 TTATGTTTCAGATAGTTTGTGCACT 57.256 32.000 19.41 0.00 0.00 4.40
189 190 5.673337 TGTTTCAGATAGTTTGTGCACTC 57.327 39.130 19.41 5.88 0.00 3.51
190 191 5.368145 TGTTTCAGATAGTTTGTGCACTCT 58.632 37.500 19.41 15.25 0.00 3.24
191 192 5.237127 TGTTTCAGATAGTTTGTGCACTCTG 59.763 40.000 19.41 19.77 0.00 3.35
192 193 3.930336 TCAGATAGTTTGTGCACTCTGG 58.070 45.455 23.53 11.01 0.00 3.86
193 194 3.324846 TCAGATAGTTTGTGCACTCTGGT 59.675 43.478 23.53 11.65 0.00 4.00
194 195 4.526650 TCAGATAGTTTGTGCACTCTGGTA 59.473 41.667 23.53 9.26 0.00 3.25
195 196 4.627467 CAGATAGTTTGTGCACTCTGGTAC 59.373 45.833 19.41 6.89 0.00 3.34
196 197 1.865865 AGTTTGTGCACTCTGGTACG 58.134 50.000 19.41 0.00 0.00 3.67
197 198 1.138266 AGTTTGTGCACTCTGGTACGT 59.862 47.619 19.41 0.00 0.00 3.57
198 199 1.260561 GTTTGTGCACTCTGGTACGTG 59.739 52.381 19.41 0.00 0.00 4.49
199 200 0.249699 TTGTGCACTCTGGTACGTGG 60.250 55.000 19.41 0.00 0.00 4.94
200 201 1.110518 TGTGCACTCTGGTACGTGGA 61.111 55.000 19.41 0.00 0.00 4.02
201 202 0.246635 GTGCACTCTGGTACGTGGAT 59.753 55.000 10.32 0.00 34.07 3.41
202 203 0.530744 TGCACTCTGGTACGTGGATC 59.469 55.000 0.00 0.00 0.00 3.36
203 204 0.818296 GCACTCTGGTACGTGGATCT 59.182 55.000 0.00 0.00 0.00 2.75
204 205 1.202313 GCACTCTGGTACGTGGATCTC 60.202 57.143 0.00 0.00 0.00 2.75
205 206 1.064208 CACTCTGGTACGTGGATCTCG 59.936 57.143 0.00 8.71 0.00 4.04
206 207 1.065636 ACTCTGGTACGTGGATCTCGA 60.066 52.381 15.17 0.00 0.00 4.04
207 208 1.331138 CTCTGGTACGTGGATCTCGAC 59.669 57.143 15.17 9.74 0.00 4.20
208 209 0.381089 CTGGTACGTGGATCTCGACC 59.619 60.000 15.17 15.92 33.05 4.79
209 210 0.034767 TGGTACGTGGATCTCGACCT 60.035 55.000 15.17 0.00 33.35 3.85
210 211 0.381089 GGTACGTGGATCTCGACCTG 59.619 60.000 15.17 0.00 0.00 4.00
211 212 0.248539 GTACGTGGATCTCGACCTGC 60.249 60.000 15.17 0.00 0.00 4.85
212 213 1.712018 TACGTGGATCTCGACCTGCG 61.712 60.000 15.17 0.00 42.69 5.18
250 251 2.983433 TTTTTGGGCACGCAACATG 58.017 47.368 0.00 0.00 0.00 3.21
251 252 0.176680 TTTTTGGGCACGCAACATGT 59.823 45.000 0.00 0.00 0.00 3.21
252 253 0.176680 TTTTGGGCACGCAACATGTT 59.823 45.000 4.92 4.92 0.00 2.71
253 254 0.176680 TTTGGGCACGCAACATGTTT 59.823 45.000 8.77 0.00 0.00 2.83
254 255 0.529337 TTGGGCACGCAACATGTTTG 60.529 50.000 8.77 6.36 0.00 2.93
255 256 2.309501 GGGCACGCAACATGTTTGC 61.310 57.895 20.58 20.58 41.71 3.68
278 279 6.856494 CGGAGCAGATAATATTCGACTAAC 57.144 41.667 0.00 0.00 0.00 2.34
279 280 6.379386 CGGAGCAGATAATATTCGACTAACA 58.621 40.000 0.00 0.00 0.00 2.41
280 281 7.030165 CGGAGCAGATAATATTCGACTAACAT 58.970 38.462 0.00 0.00 0.00 2.71
281 282 8.182227 CGGAGCAGATAATATTCGACTAACATA 58.818 37.037 0.00 0.00 0.00 2.29
282 283 9.509855 GGAGCAGATAATATTCGACTAACATAG 57.490 37.037 0.00 0.00 0.00 2.23
283 284 9.509855 GAGCAGATAATATTCGACTAACATAGG 57.490 37.037 0.00 0.00 0.00 2.57
284 285 8.470805 AGCAGATAATATTCGACTAACATAGGG 58.529 37.037 0.00 0.00 0.00 3.53
285 286 7.707035 GCAGATAATATTCGACTAACATAGGGG 59.293 40.741 0.00 0.00 0.00 4.79
286 287 8.750298 CAGATAATATTCGACTAACATAGGGGT 58.250 37.037 0.00 0.00 0.00 4.95
287 288 9.986157 AGATAATATTCGACTAACATAGGGGTA 57.014 33.333 0.00 0.00 0.00 3.69
289 290 9.765295 ATAATATTCGACTAACATAGGGGTAGT 57.235 33.333 0.00 0.00 0.00 2.73
290 291 7.700022 ATATTCGACTAACATAGGGGTAGTC 57.300 40.000 9.02 9.02 35.19 2.59
291 292 4.508551 TCGACTAACATAGGGGTAGTCA 57.491 45.455 16.97 4.62 37.57 3.41
292 293 4.858850 TCGACTAACATAGGGGTAGTCAA 58.141 43.478 16.97 0.00 37.57 3.18
293 294 5.263599 TCGACTAACATAGGGGTAGTCAAA 58.736 41.667 16.97 4.52 37.57 2.69
294 295 5.895534 TCGACTAACATAGGGGTAGTCAAAT 59.104 40.000 16.97 0.00 37.57 2.32
295 296 6.040166 TCGACTAACATAGGGGTAGTCAAATC 59.960 42.308 16.97 0.00 37.57 2.17
296 297 6.496144 ACTAACATAGGGGTAGTCAAATCC 57.504 41.667 0.00 0.00 0.00 3.01
297 298 6.210522 ACTAACATAGGGGTAGTCAAATCCT 58.789 40.000 0.00 0.00 0.00 3.24
298 299 7.367828 ACTAACATAGGGGTAGTCAAATCCTA 58.632 38.462 0.00 0.00 34.96 2.94
299 300 7.847848 ACTAACATAGGGGTAGTCAAATCCTAA 59.152 37.037 0.00 0.00 34.26 2.69
300 301 7.519347 AACATAGGGGTAGTCAAATCCTAAA 57.481 36.000 0.00 0.00 34.26 1.85
301 302 7.138054 ACATAGGGGTAGTCAAATCCTAAAG 57.862 40.000 0.00 0.00 34.26 1.85
302 303 6.906901 ACATAGGGGTAGTCAAATCCTAAAGA 59.093 38.462 0.00 0.00 34.26 2.52
303 304 7.404980 ACATAGGGGTAGTCAAATCCTAAAGAA 59.595 37.037 0.00 0.00 34.26 2.52
304 305 6.713731 AGGGGTAGTCAAATCCTAAAGAAA 57.286 37.500 0.00 0.00 0.00 2.52
305 306 6.722328 AGGGGTAGTCAAATCCTAAAGAAAG 58.278 40.000 0.00 0.00 0.00 2.62
306 307 6.504279 AGGGGTAGTCAAATCCTAAAGAAAGA 59.496 38.462 0.00 0.00 0.00 2.52
307 308 7.018249 AGGGGTAGTCAAATCCTAAAGAAAGAA 59.982 37.037 0.00 0.00 0.00 2.52
308 309 7.668469 GGGGTAGTCAAATCCTAAAGAAAGAAA 59.332 37.037 0.00 0.00 0.00 2.52
309 310 8.731605 GGGTAGTCAAATCCTAAAGAAAGAAAG 58.268 37.037 0.00 0.00 0.00 2.62
310 311 9.503399 GGTAGTCAAATCCTAAAGAAAGAAAGA 57.497 33.333 0.00 0.00 0.00 2.52
379 380 4.184629 ACGCAGATTTGACATTAGAGGAC 58.815 43.478 0.00 0.00 0.00 3.85
391 719 6.487668 TGACATTAGAGGACCGAATATAACGA 59.512 38.462 0.00 0.00 0.00 3.85
413 741 3.116300 GTCATACGTGTACAGCCTGATG 58.884 50.000 0.00 0.00 0.00 3.07
539 879 1.287739 AGAGGGAGAGAGGGTCTTCTG 59.712 57.143 0.00 0.00 34.71 3.02
554 894 4.168291 CTGCTTCCTCCCCTCCGC 62.168 72.222 0.00 0.00 0.00 5.54
642 1914 3.281787 TCCCCGTCCCCTCCTCTT 61.282 66.667 0.00 0.00 0.00 2.85
643 1915 2.764547 CCCCGTCCCCTCCTCTTC 60.765 72.222 0.00 0.00 0.00 2.87
644 1916 2.764547 CCCGTCCCCTCCTCTTCC 60.765 72.222 0.00 0.00 0.00 3.46
645 1917 2.364961 CCGTCCCCTCCTCTTCCT 59.635 66.667 0.00 0.00 0.00 3.36
646 1918 1.758906 CCGTCCCCTCCTCTTCCTC 60.759 68.421 0.00 0.00 0.00 3.71
647 1919 1.308326 CGTCCCCTCCTCTTCCTCT 59.692 63.158 0.00 0.00 0.00 3.69
652 1924 1.598856 CCCTCCTCTTCCTCTCCCCT 61.599 65.000 0.00 0.00 0.00 4.79
663 1935 1.842381 CTCTCCCCTGACCCACCAAC 61.842 65.000 0.00 0.00 0.00 3.77
706 1978 4.798682 CCCGTGCCCTAGACCCCT 62.799 72.222 0.00 0.00 0.00 4.79
761 2033 4.111053 GCCGTTCCCCTTCCTCCC 62.111 72.222 0.00 0.00 0.00 4.30
762 2034 3.408853 CCGTTCCCCTTCCTCCCC 61.409 72.222 0.00 0.00 0.00 4.81
763 2035 3.782443 CGTTCCCCTTCCTCCCCG 61.782 72.222 0.00 0.00 0.00 5.73
798 2070 1.290955 CGCTGGGTTTGAGGTACGA 59.709 57.895 0.00 0.00 0.00 3.43
802 2074 0.320374 TGGGTTTGAGGTACGAGCTG 59.680 55.000 0.00 0.00 0.00 4.24
804 2076 1.019805 GGTTTGAGGTACGAGCTGGC 61.020 60.000 0.00 0.00 0.00 4.85
805 2077 1.019805 GTTTGAGGTACGAGCTGGCC 61.020 60.000 0.00 0.00 0.00 5.36
807 2079 1.888436 TTGAGGTACGAGCTGGCCTG 61.888 60.000 3.32 4.26 0.00 4.85
808 2080 2.037367 AGGTACGAGCTGGCCTGA 59.963 61.111 14.77 0.00 0.00 3.86
809 2081 2.184579 GGTACGAGCTGGCCTGAC 59.815 66.667 14.77 4.90 0.00 3.51
810 2082 2.646175 GGTACGAGCTGGCCTGACA 61.646 63.158 14.77 0.00 0.00 3.58
811 2083 1.517832 GTACGAGCTGGCCTGACAT 59.482 57.895 14.77 0.00 0.00 3.06
812 2084 0.744874 GTACGAGCTGGCCTGACATA 59.255 55.000 14.77 0.00 0.00 2.29
818 2107 1.589993 CTGGCCTGACATACGCGAG 60.590 63.158 15.93 4.52 0.00 5.03
823 2112 1.828832 CCTGACATACGCGAGTTCTC 58.171 55.000 15.93 0.47 46.40 2.87
969 2264 3.126831 GCCTAGGTGAATTGATCGACAG 58.873 50.000 11.31 0.00 0.00 3.51
1004 2299 2.627945 TCCGTACTGATTCACAATGGC 58.372 47.619 0.00 0.00 0.00 4.40
1111 2406 2.141911 AGGCAAGAATCCATCCCTCAT 58.858 47.619 0.00 0.00 0.00 2.90
1116 2411 1.974236 AGAATCCATCCCTCATCCGTC 59.026 52.381 0.00 0.00 0.00 4.79
1117 2412 1.002544 GAATCCATCCCTCATCCGTCC 59.997 57.143 0.00 0.00 0.00 4.79
1118 2413 0.104986 ATCCATCCCTCATCCGTCCA 60.105 55.000 0.00 0.00 0.00 4.02
1119 2414 0.104986 TCCATCCCTCATCCGTCCAT 60.105 55.000 0.00 0.00 0.00 3.41
1130 2429 0.764890 TCCGTCCATCCATCCATTCC 59.235 55.000 0.00 0.00 0.00 3.01
1160 2459 2.540769 CCGTGCACAACAAAACCAGTAG 60.541 50.000 18.64 0.00 0.00 2.57
1163 2462 2.098934 TGCACAACAAAACCAGTAGCAG 59.901 45.455 0.00 0.00 0.00 4.24
1185 2484 4.648007 TCACAGGGAGAGCCTGTT 57.352 55.556 0.00 0.00 44.89 3.16
1186 2485 2.366469 TCACAGGGAGAGCCTGTTC 58.634 57.895 0.00 0.00 44.89 3.18
1187 2486 1.079543 CACAGGGAGAGCCTGTTCG 60.080 63.158 0.00 0.00 44.89 3.95
1188 2487 1.534235 ACAGGGAGAGCCTGTTCGT 60.534 57.895 0.00 0.00 44.89 3.85
1189 2488 0.251653 ACAGGGAGAGCCTGTTCGTA 60.252 55.000 0.00 0.00 44.89 3.43
1190 2489 0.173708 CAGGGAGAGCCTGTTCGTAC 59.826 60.000 0.00 0.00 0.00 3.67
1191 2490 1.139095 GGGAGAGCCTGTTCGTACG 59.861 63.158 9.53 9.53 0.00 3.67
1192 2491 1.516603 GGAGAGCCTGTTCGTACGC 60.517 63.158 11.24 0.00 0.00 4.42
1193 2492 1.516603 GAGAGCCTGTTCGTACGCC 60.517 63.158 11.24 4.00 0.00 5.68
1194 2493 1.935327 GAGAGCCTGTTCGTACGCCT 61.935 60.000 11.24 0.00 0.00 5.52
1195 2494 1.080025 GAGCCTGTTCGTACGCCTT 60.080 57.895 11.24 0.00 0.00 4.35
1196 2495 1.077089 GAGCCTGTTCGTACGCCTTC 61.077 60.000 11.24 1.32 0.00 3.46
1197 2496 1.080025 GCCTGTTCGTACGCCTTCT 60.080 57.895 11.24 0.00 0.00 2.85
1198 2497 1.077089 GCCTGTTCGTACGCCTTCTC 61.077 60.000 11.24 0.00 0.00 2.87
1199 2498 0.242825 CCTGTTCGTACGCCTTCTCA 59.757 55.000 11.24 2.52 0.00 3.27
1200 2499 1.135083 CCTGTTCGTACGCCTTCTCAT 60.135 52.381 11.24 0.00 0.00 2.90
1201 2500 1.920574 CTGTTCGTACGCCTTCTCATG 59.079 52.381 11.24 0.00 0.00 3.07
1202 2501 0.645868 GTTCGTACGCCTTCTCATGC 59.354 55.000 11.24 0.00 0.00 4.06
1203 2502 0.459585 TTCGTACGCCTTCTCATGCC 60.460 55.000 11.24 0.00 0.00 4.40
1204 2503 1.141881 CGTACGCCTTCTCATGCCT 59.858 57.895 0.52 0.00 0.00 4.75
1205 2504 1.148157 CGTACGCCTTCTCATGCCTG 61.148 60.000 0.52 0.00 0.00 4.85
1206 2505 1.153369 TACGCCTTCTCATGCCTGC 60.153 57.895 0.00 0.00 0.00 4.85
1207 2506 2.593468 TACGCCTTCTCATGCCTGCC 62.593 60.000 0.00 0.00 0.00 4.85
1208 2507 3.207669 GCCTTCTCATGCCTGCCG 61.208 66.667 0.00 0.00 0.00 5.69
1219 2518 1.372872 GCCTGCCGCGTTTCATTTT 60.373 52.632 4.92 0.00 0.00 1.82
1296 2595 2.650116 CCACCGGTGACCAGGAGAG 61.650 68.421 36.07 11.77 0.00 3.20
1299 2598 0.323542 ACCGGTGACCAGGAGAGTAG 60.324 60.000 6.12 0.00 0.00 2.57
1300 2599 1.668101 CCGGTGACCAGGAGAGTAGC 61.668 65.000 1.11 0.00 0.00 3.58
1372 2671 1.416813 CCGTGCAGCTTGAGATCGAC 61.417 60.000 0.00 0.00 0.00 4.20
1429 2728 2.126463 GGAAAGAAAAGCGGCGGC 60.126 61.111 9.78 8.43 40.37 6.53
1453 2752 4.393155 TCGGGTTGCGCTGATGCT 62.393 61.111 9.73 0.00 36.97 3.79
1469 2768 5.453057 GCTGATGCTGAGGATAAGAAGAAGA 60.453 44.000 2.01 0.00 36.03 2.87
1470 2769 6.550938 TGATGCTGAGGATAAGAAGAAGAA 57.449 37.500 0.00 0.00 0.00 2.52
1471 2770 6.580788 TGATGCTGAGGATAAGAAGAAGAAG 58.419 40.000 0.00 0.00 0.00 2.85
1595 2897 1.020437 GGCTAAGGTGCAGATTCAGC 58.980 55.000 0.00 0.00 34.88 4.26
1669 2971 1.035932 AGATGCTGGCAATGCTGGTC 61.036 55.000 4.82 0.00 0.00 4.02
1895 3197 1.208052 TGTTACTCTGCCTCCTGATGC 59.792 52.381 0.00 0.00 0.00 3.91
1930 3232 4.620723 TGTAGGAAAGGGAAGAGCTGATA 58.379 43.478 0.00 0.00 0.00 2.15
1987 3289 3.646520 CTTTGAGAAGCGCGTTGAG 57.353 52.632 8.43 0.00 0.00 3.02
1988 3290 0.451792 CTTTGAGAAGCGCGTTGAGC 60.452 55.000 8.43 0.00 43.95 4.26
2016 3318 3.119352 GGAACTTCTAGCAGGCAAAATGG 60.119 47.826 0.00 0.00 0.00 3.16
2146 3448 2.290323 GGAGTTCTTGCCTAAGCTGGAA 60.290 50.000 0.00 0.00 40.80 3.53
2193 3495 2.250031 TGGAGTACCTCTAAAACGCCA 58.750 47.619 0.00 0.00 40.21 5.69
2212 3514 2.791253 TGGCCTTCCCAGTTCAGAT 58.209 52.632 3.32 0.00 39.18 2.90
2297 3599 5.139727 TGAAAGCCAATTCAAAGAAGGAGA 58.860 37.500 0.00 0.00 36.42 3.71
2390 3694 3.565307 TGGAAAATGCAGTCAGGTTTCT 58.435 40.909 0.00 0.00 33.79 2.52
2433 3737 6.038997 ACCAAGATACCTCAGTGAACTTAC 57.961 41.667 0.00 0.00 0.00 2.34
2909 4255 3.309954 GTGATGTTTCTTGGGATAGCGAC 59.690 47.826 0.00 0.00 0.00 5.19
2929 4275 3.438183 ACCAGGAAGAGGTTACACGTAT 58.562 45.455 0.00 0.00 35.33 3.06
3164 4510 0.685097 TTATGACAGGGGCGCCTATC 59.315 55.000 28.56 22.06 0.00 2.08
3230 4578 2.853077 CCCTGGGAAATTAGGAGTCCTT 59.147 50.000 19.06 0.00 36.11 3.36
3461 4809 2.858344 ACGTGCTACTTATCGTGCATTC 59.142 45.455 0.00 0.00 37.76 2.67
3482 4830 2.093764 CCTTGCTAGTTCAGAGGTGGAG 60.094 54.545 0.00 0.00 0.00 3.86
3614 4962 7.062957 ACTATGGGAATATTGAAAGAAGTGGG 58.937 38.462 0.00 0.00 0.00 4.61
3713 5061 5.291178 CAACAGATGCTTGACATTTTGGAA 58.709 37.500 0.00 0.00 39.84 3.53
3993 5341 3.893200 ACCTACCACCTTTTAACCTTTGC 59.107 43.478 0.00 0.00 0.00 3.68
4132 5484 3.478857 TTTAAGGCGTCCTCTGTTGAA 57.521 42.857 0.00 0.00 30.89 2.69
4185 5537 3.152261 GTCCTAGGACAAGTGATCACG 57.848 52.381 32.91 9.54 44.02 4.35
4478 5830 5.240183 CCAACTGTCTGAAGATGTGAACATT 59.760 40.000 0.00 0.00 36.57 2.71
4653 6005 3.945285 CCAGGGCGTTCATGTAAGTAATT 59.055 43.478 0.00 0.00 0.00 1.40
4666 6018 4.634004 TGTAAGTAATTTGTGCTGATCCCG 59.366 41.667 0.00 0.00 0.00 5.14
4667 6019 2.017049 AGTAATTTGTGCTGATCCCGC 58.983 47.619 0.00 0.00 0.00 6.13
4675 6027 3.036429 GCTGATCCCGCCCTCTGTT 62.036 63.158 0.00 0.00 0.00 3.16
4680 6032 1.485066 GATCCCGCCCTCTGTTCTTTA 59.515 52.381 0.00 0.00 0.00 1.85
5118 6473 3.421919 TCAGATGCACTGGAACATCAA 57.578 42.857 13.87 0.00 44.16 2.57
5205 6560 6.070309 ACTCTTCTTCTAGCAGGAACATGATT 60.070 38.462 0.00 0.00 0.00 2.57
5310 6665 4.685169 ACATTTCAAGAACCGCATACAG 57.315 40.909 0.00 0.00 0.00 2.74
5313 6668 0.392461 TCAAGAACCGCATACAGCCC 60.392 55.000 0.00 0.00 41.38 5.19
5406 6761 2.836944 GGTGCTGAAACCCGAGTAC 58.163 57.895 0.00 0.00 33.79 2.73
5436 6791 1.709147 GCAGCTGTAGTTCATGGGCG 61.709 60.000 16.64 0.00 0.00 6.13
5441 6796 1.745087 CTGTAGTTCATGGGCGCAAAT 59.255 47.619 10.83 0.00 0.00 2.32
5505 6862 9.324008 AGATAGGATGTTGATACAGAGATTGAT 57.676 33.333 0.00 0.00 37.77 2.57
5510 6868 9.553064 GGATGTTGATACAGAGATTGATAGTTT 57.447 33.333 0.00 0.00 37.77 2.66
5528 6887 9.720769 TGATAGTTTTCTCTTAAATCCTTCGTT 57.279 29.630 0.00 0.00 0.00 3.85
5536 6895 4.454504 TCTTAAATCCTTCGTTTGGCTGAC 59.545 41.667 0.00 0.00 0.00 3.51
5543 6902 3.325870 CTTCGTTTGGCTGACAGATACA 58.674 45.455 6.65 0.00 0.00 2.29
5544 6903 2.959516 TCGTTTGGCTGACAGATACAG 58.040 47.619 6.65 0.00 38.27 2.74
5545 6904 2.299013 TCGTTTGGCTGACAGATACAGT 59.701 45.455 6.65 0.00 37.64 3.55
5546 6905 3.508402 TCGTTTGGCTGACAGATACAGTA 59.492 43.478 6.65 0.00 37.64 2.74
5547 6906 3.612860 CGTTTGGCTGACAGATACAGTAC 59.387 47.826 6.65 3.77 37.64 2.73
5548 6907 4.618460 CGTTTGGCTGACAGATACAGTACT 60.618 45.833 6.65 0.00 37.64 2.73
5549 6908 5.238583 GTTTGGCTGACAGATACAGTACTT 58.761 41.667 6.65 0.00 37.64 2.24
5550 6909 5.483685 TTGGCTGACAGATACAGTACTTT 57.516 39.130 6.65 0.00 37.64 2.66
5551 6910 5.483685 TGGCTGACAGATACAGTACTTTT 57.516 39.130 6.65 0.00 37.64 2.27
5552 6911 5.479306 TGGCTGACAGATACAGTACTTTTC 58.521 41.667 6.65 0.00 37.64 2.29
5595 6954 7.011950 TGGCACAGAAATATTAATTAGGTCACG 59.988 37.037 0.00 0.00 0.00 4.35
5616 6975 3.497227 CGGGTTCTTTTTCTCCCCAGTTA 60.497 47.826 0.00 0.00 36.84 2.24
5629 6988 6.616577 TCTCCCCAGTTAAATTAGTGGTTTT 58.383 36.000 2.16 0.00 36.98 2.43
5653 7016 2.149973 AGCCCTTGCCTTTTATCCTG 57.850 50.000 0.00 0.00 38.69 3.86
5656 7020 2.567169 GCCCTTGCCTTTTATCCTGTTT 59.433 45.455 0.00 0.00 0.00 2.83
5671 7035 8.693120 TTATCCTGTTTTGGTGTACATGTTTA 57.307 30.769 2.30 0.00 0.00 2.01
5679 7043 5.050126 TGGTGTACATGTTTACTGGGAAA 57.950 39.130 2.30 0.00 0.00 3.13
5765 7139 4.539509 TTTGTATGCGTCGTTCTGTTTT 57.460 36.364 0.00 0.00 0.00 2.43
5769 7143 2.904011 TGCGTCGTTCTGTTTTTGTT 57.096 40.000 0.00 0.00 0.00 2.83
5772 7146 2.277834 GCGTCGTTCTGTTTTTGTTTGG 59.722 45.455 0.00 0.00 0.00 3.28
5931 7305 8.647143 TTTATTTTTGCACTCTCTTTTTCCAG 57.353 30.769 0.00 0.00 0.00 3.86
5934 7308 2.483876 TGCACTCTCTTTTTCCAGTCG 58.516 47.619 0.00 0.00 0.00 4.18
5954 7328 7.931948 CCAGTCGTCTGTTTATATATTTCCCTT 59.068 37.037 8.82 0.00 39.82 3.95
6080 7456 2.103094 TGGCGTATCTCTGAATTCTGGG 59.897 50.000 11.89 9.04 0.00 4.45
6082 7458 3.432326 GGCGTATCTCTGAATTCTGGGTT 60.432 47.826 11.53 6.57 0.00 4.11
6087 7463 2.711009 TCTCTGAATTCTGGGTTGTGGT 59.289 45.455 11.53 0.00 0.00 4.16
6202 7578 8.668353 CGTTTTTCAGATTTCTGGAAGATGATA 58.332 33.333 7.68 0.00 46.36 2.15
6235 7611 6.934645 TGAGTTGAAACTACAGGGTTCTTATG 59.065 38.462 0.00 0.00 41.88 1.90
6370 7762 3.715628 AAGTCATTTTCGCAAGTTGCT 57.284 38.095 24.61 3.40 42.25 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.907486 TGATGCCCTTGGAGTCTGAG 59.093 55.000 0.00 0.00 0.00 3.35
1 2 0.615331 GTGATGCCCTTGGAGTCTGA 59.385 55.000 0.00 0.00 0.00 3.27
2 3 0.325933 TGTGATGCCCTTGGAGTCTG 59.674 55.000 0.00 0.00 0.00 3.51
3 4 0.326264 GTGTGATGCCCTTGGAGTCT 59.674 55.000 0.00 0.00 0.00 3.24
4 5 1.021390 CGTGTGATGCCCTTGGAGTC 61.021 60.000 0.00 0.00 0.00 3.36
5 6 1.003355 CGTGTGATGCCCTTGGAGT 60.003 57.895 0.00 0.00 0.00 3.85
6 7 2.401766 GCGTGTGATGCCCTTGGAG 61.402 63.158 0.00 0.00 0.00 3.86
7 8 2.359850 GCGTGTGATGCCCTTGGA 60.360 61.111 0.00 0.00 0.00 3.53
8 9 2.203972 CTTGCGTGTGATGCCCTTGG 62.204 60.000 0.00 0.00 0.00 3.61
9 10 1.210931 CTTGCGTGTGATGCCCTTG 59.789 57.895 0.00 0.00 0.00 3.61
10 11 0.036164 TACTTGCGTGTGATGCCCTT 59.964 50.000 0.00 0.00 0.00 3.95
11 12 0.036164 TTACTTGCGTGTGATGCCCT 59.964 50.000 0.00 0.00 0.00 5.19
12 13 0.168128 GTTACTTGCGTGTGATGCCC 59.832 55.000 0.00 0.00 0.00 5.36
13 14 0.871722 TGTTACTTGCGTGTGATGCC 59.128 50.000 0.00 0.00 0.00 4.40
14 15 2.307049 GTTGTTACTTGCGTGTGATGC 58.693 47.619 0.00 0.00 0.00 3.91
15 16 2.289274 TGGTTGTTACTTGCGTGTGATG 59.711 45.455 0.00 0.00 0.00 3.07
16 17 2.566913 TGGTTGTTACTTGCGTGTGAT 58.433 42.857 0.00 0.00 0.00 3.06
17 18 2.025589 TGGTTGTTACTTGCGTGTGA 57.974 45.000 0.00 0.00 0.00 3.58
18 19 2.834574 TTGGTTGTTACTTGCGTGTG 57.165 45.000 0.00 0.00 0.00 3.82
19 20 3.630312 AGATTTGGTTGTTACTTGCGTGT 59.370 39.130 0.00 0.00 0.00 4.49
20 21 4.223320 AGATTTGGTTGTTACTTGCGTG 57.777 40.909 0.00 0.00 0.00 5.34
21 22 5.049680 CAGTAGATTTGGTTGTTACTTGCGT 60.050 40.000 0.00 0.00 0.00 5.24
22 23 5.049680 ACAGTAGATTTGGTTGTTACTTGCG 60.050 40.000 0.00 0.00 0.00 4.85
23 24 6.313744 ACAGTAGATTTGGTTGTTACTTGC 57.686 37.500 0.00 0.00 0.00 4.01
26 27 9.398538 TGTAAAACAGTAGATTTGGTTGTTACT 57.601 29.630 0.00 0.00 32.18 2.24
30 31 9.528018 CAATTGTAAAACAGTAGATTTGGTTGT 57.472 29.630 0.00 0.00 0.00 3.32
31 32 9.528018 ACAATTGTAAAACAGTAGATTTGGTTG 57.472 29.630 9.97 0.00 0.00 3.77
32 33 9.744468 GACAATTGTAAAACAGTAGATTTGGTT 57.256 29.630 11.95 0.00 0.00 3.67
33 34 9.131791 AGACAATTGTAAAACAGTAGATTTGGT 57.868 29.630 11.95 0.00 0.00 3.67
34 35 9.612620 GAGACAATTGTAAAACAGTAGATTTGG 57.387 33.333 11.95 0.00 0.00 3.28
38 39 8.784043 GGTTGAGACAATTGTAAAACAGTAGAT 58.216 33.333 22.16 0.00 0.00 1.98
39 40 7.771361 TGGTTGAGACAATTGTAAAACAGTAGA 59.229 33.333 22.16 2.73 0.00 2.59
40 41 7.925993 TGGTTGAGACAATTGTAAAACAGTAG 58.074 34.615 22.16 0.00 0.00 2.57
41 42 7.867305 TGGTTGAGACAATTGTAAAACAGTA 57.133 32.000 22.16 11.61 0.00 2.74
42 43 6.767524 TGGTTGAGACAATTGTAAAACAGT 57.232 33.333 22.16 0.00 0.00 3.55
43 44 6.198966 GCTTGGTTGAGACAATTGTAAAACAG 59.801 38.462 22.16 16.15 0.00 3.16
44 45 6.039616 GCTTGGTTGAGACAATTGTAAAACA 58.960 36.000 22.16 17.77 0.00 2.83
45 46 6.039616 TGCTTGGTTGAGACAATTGTAAAAC 58.960 36.000 11.95 14.93 0.00 2.43
46 47 6.096141 TCTGCTTGGTTGAGACAATTGTAAAA 59.904 34.615 11.95 3.58 0.00 1.52
47 48 5.592282 TCTGCTTGGTTGAGACAATTGTAAA 59.408 36.000 11.95 3.95 0.00 2.01
48 49 5.129634 TCTGCTTGGTTGAGACAATTGTAA 58.870 37.500 11.95 0.00 0.00 2.41
49 50 4.713553 TCTGCTTGGTTGAGACAATTGTA 58.286 39.130 11.95 0.00 0.00 2.41
50 51 3.554934 TCTGCTTGGTTGAGACAATTGT 58.445 40.909 11.78 11.78 0.00 2.71
51 52 4.037208 ACTTCTGCTTGGTTGAGACAATTG 59.963 41.667 3.24 3.24 0.00 2.32
52 53 4.210331 ACTTCTGCTTGGTTGAGACAATT 58.790 39.130 0.00 0.00 0.00 2.32
53 54 3.825328 ACTTCTGCTTGGTTGAGACAAT 58.175 40.909 0.00 0.00 0.00 2.71
54 55 3.281727 ACTTCTGCTTGGTTGAGACAA 57.718 42.857 0.00 0.00 0.00 3.18
55 56 3.206150 GAACTTCTGCTTGGTTGAGACA 58.794 45.455 0.00 0.00 0.00 3.41
56 57 3.002759 GTGAACTTCTGCTTGGTTGAGAC 59.997 47.826 0.00 0.00 0.00 3.36
57 58 3.206150 GTGAACTTCTGCTTGGTTGAGA 58.794 45.455 0.00 0.00 0.00 3.27
58 59 2.945008 TGTGAACTTCTGCTTGGTTGAG 59.055 45.455 0.00 0.00 0.00 3.02
59 60 2.997980 TGTGAACTTCTGCTTGGTTGA 58.002 42.857 0.00 0.00 0.00 3.18
60 61 3.316029 TGATGTGAACTTCTGCTTGGTTG 59.684 43.478 0.00 0.00 0.00 3.77
61 62 3.554934 TGATGTGAACTTCTGCTTGGTT 58.445 40.909 0.00 0.00 0.00 3.67
62 63 3.213206 TGATGTGAACTTCTGCTTGGT 57.787 42.857 0.00 0.00 0.00 3.67
63 64 4.778534 ATTGATGTGAACTTCTGCTTGG 57.221 40.909 0.00 0.00 0.00 3.61
64 65 6.921857 AGAAAATTGATGTGAACTTCTGCTTG 59.078 34.615 0.00 0.00 0.00 4.01
65 66 7.047460 AGAAAATTGATGTGAACTTCTGCTT 57.953 32.000 0.00 0.00 0.00 3.91
66 67 6.263842 TGAGAAAATTGATGTGAACTTCTGCT 59.736 34.615 0.00 0.00 0.00 4.24
67 68 6.441274 TGAGAAAATTGATGTGAACTTCTGC 58.559 36.000 0.00 0.00 0.00 4.26
68 69 9.770503 CTATGAGAAAATTGATGTGAACTTCTG 57.229 33.333 0.00 0.00 0.00 3.02
69 70 8.457261 GCTATGAGAAAATTGATGTGAACTTCT 58.543 33.333 0.00 0.00 0.00 2.85
70 71 8.457261 AGCTATGAGAAAATTGATGTGAACTTC 58.543 33.333 0.00 0.00 0.00 3.01
71 72 8.345724 AGCTATGAGAAAATTGATGTGAACTT 57.654 30.769 0.00 0.00 0.00 2.66
72 73 7.609146 TGAGCTATGAGAAAATTGATGTGAACT 59.391 33.333 0.00 0.00 0.00 3.01
73 74 7.695618 GTGAGCTATGAGAAAATTGATGTGAAC 59.304 37.037 0.00 0.00 0.00 3.18
74 75 7.413328 CGTGAGCTATGAGAAAATTGATGTGAA 60.413 37.037 0.00 0.00 0.00 3.18
75 76 6.036408 CGTGAGCTATGAGAAAATTGATGTGA 59.964 38.462 0.00 0.00 0.00 3.58
76 77 6.190264 CGTGAGCTATGAGAAAATTGATGTG 58.810 40.000 0.00 0.00 0.00 3.21
77 78 5.295292 CCGTGAGCTATGAGAAAATTGATGT 59.705 40.000 0.00 0.00 0.00 3.06
78 79 5.745514 CCGTGAGCTATGAGAAAATTGATG 58.254 41.667 0.00 0.00 0.00 3.07
79 80 4.274459 GCCGTGAGCTATGAGAAAATTGAT 59.726 41.667 0.00 0.00 38.99 2.57
80 81 3.623060 GCCGTGAGCTATGAGAAAATTGA 59.377 43.478 0.00 0.00 38.99 2.57
81 82 3.945179 GCCGTGAGCTATGAGAAAATTG 58.055 45.455 0.00 0.00 38.99 2.32
94 95 1.033574 AGGTATAGTGAGCCGTGAGC 58.966 55.000 0.00 0.00 44.25 4.26
95 96 3.802948 AAAGGTATAGTGAGCCGTGAG 57.197 47.619 0.00 0.00 0.00 3.51
96 97 4.020928 TGAAAAAGGTATAGTGAGCCGTGA 60.021 41.667 0.00 0.00 0.00 4.35
97 98 4.250464 TGAAAAAGGTATAGTGAGCCGTG 58.750 43.478 0.00 0.00 0.00 4.94
98 99 4.222145 TCTGAAAAAGGTATAGTGAGCCGT 59.778 41.667 0.00 0.00 0.00 5.68
99 100 4.755411 TCTGAAAAAGGTATAGTGAGCCG 58.245 43.478 0.00 0.00 0.00 5.52
100 101 6.261158 GGATTCTGAAAAAGGTATAGTGAGCC 59.739 42.308 0.00 0.00 0.00 4.70
101 102 6.823689 TGGATTCTGAAAAAGGTATAGTGAGC 59.176 38.462 0.00 0.00 0.00 4.26
102 103 7.824289 TGTGGATTCTGAAAAAGGTATAGTGAG 59.176 37.037 0.00 0.00 0.00 3.51
103 104 7.685481 TGTGGATTCTGAAAAAGGTATAGTGA 58.315 34.615 0.00 0.00 0.00 3.41
104 105 7.921786 TGTGGATTCTGAAAAAGGTATAGTG 57.078 36.000 0.00 0.00 0.00 2.74
105 106 7.942341 TGTTGTGGATTCTGAAAAAGGTATAGT 59.058 33.333 0.00 0.00 0.00 2.12
106 107 8.237267 GTGTTGTGGATTCTGAAAAAGGTATAG 58.763 37.037 0.00 0.00 0.00 1.31
107 108 7.721842 TGTGTTGTGGATTCTGAAAAAGGTATA 59.278 33.333 0.00 0.00 0.00 1.47
108 109 6.549364 TGTGTTGTGGATTCTGAAAAAGGTAT 59.451 34.615 0.00 0.00 0.00 2.73
109 110 5.888724 TGTGTTGTGGATTCTGAAAAAGGTA 59.111 36.000 0.00 0.00 0.00 3.08
110 111 4.709397 TGTGTTGTGGATTCTGAAAAAGGT 59.291 37.500 0.00 0.00 0.00 3.50
111 112 5.261209 TGTGTTGTGGATTCTGAAAAAGG 57.739 39.130 0.00 0.00 0.00 3.11
112 113 5.519927 GGTTGTGTTGTGGATTCTGAAAAAG 59.480 40.000 0.00 0.00 0.00 2.27
113 114 5.047021 TGGTTGTGTTGTGGATTCTGAAAAA 60.047 36.000 0.00 0.00 0.00 1.94
114 115 4.464244 TGGTTGTGTTGTGGATTCTGAAAA 59.536 37.500 0.00 0.00 0.00 2.29
115 116 4.019858 TGGTTGTGTTGTGGATTCTGAAA 58.980 39.130 0.00 0.00 0.00 2.69
116 117 3.625853 TGGTTGTGTTGTGGATTCTGAA 58.374 40.909 0.00 0.00 0.00 3.02
117 118 3.289407 TGGTTGTGTTGTGGATTCTGA 57.711 42.857 0.00 0.00 0.00 3.27
118 119 4.383850 TTTGGTTGTGTTGTGGATTCTG 57.616 40.909 0.00 0.00 0.00 3.02
119 120 5.596361 TGTATTTGGTTGTGTTGTGGATTCT 59.404 36.000 0.00 0.00 0.00 2.40
120 121 5.837437 TGTATTTGGTTGTGTTGTGGATTC 58.163 37.500 0.00 0.00 0.00 2.52
121 122 5.860941 TGTATTTGGTTGTGTTGTGGATT 57.139 34.783 0.00 0.00 0.00 3.01
122 123 5.596361 TCTTGTATTTGGTTGTGTTGTGGAT 59.404 36.000 0.00 0.00 0.00 3.41
123 124 4.950475 TCTTGTATTTGGTTGTGTTGTGGA 59.050 37.500 0.00 0.00 0.00 4.02
124 125 5.255710 TCTTGTATTTGGTTGTGTTGTGG 57.744 39.130 0.00 0.00 0.00 4.17
125 126 7.769272 AAATCTTGTATTTGGTTGTGTTGTG 57.231 32.000 0.00 0.00 0.00 3.33
126 127 9.308318 GTTAAATCTTGTATTTGGTTGTGTTGT 57.692 29.630 0.00 0.00 0.00 3.32
127 128 9.307121 TGTTAAATCTTGTATTTGGTTGTGTTG 57.693 29.630 0.00 0.00 0.00 3.33
128 129 9.877178 TTGTTAAATCTTGTATTTGGTTGTGTT 57.123 25.926 0.00 0.00 0.00 3.32
129 130 9.877178 TTTGTTAAATCTTGTATTTGGTTGTGT 57.123 25.926 0.00 0.00 0.00 3.72
131 132 9.320352 GGTTTGTTAAATCTTGTATTTGGTTGT 57.680 29.630 0.00 0.00 0.00 3.32
132 133 9.541143 AGGTTTGTTAAATCTTGTATTTGGTTG 57.459 29.630 0.00 0.00 0.00 3.77
133 134 9.758651 GAGGTTTGTTAAATCTTGTATTTGGTT 57.241 29.630 0.00 0.00 30.38 3.67
134 135 9.143155 AGAGGTTTGTTAAATCTTGTATTTGGT 57.857 29.630 0.00 0.00 30.38 3.67
135 136 9.981114 AAGAGGTTTGTTAAATCTTGTATTTGG 57.019 29.630 0.00 0.00 30.38 3.28
149 150 9.567776 TCTGAAACATAATCAAGAGGTTTGTTA 57.432 29.630 0.00 0.00 32.32 2.41
150 151 8.463930 TCTGAAACATAATCAAGAGGTTTGTT 57.536 30.769 0.00 0.00 32.32 2.83
151 152 8.641498 ATCTGAAACATAATCAAGAGGTTTGT 57.359 30.769 0.00 0.00 32.32 2.83
153 154 9.965902 ACTATCTGAAACATAATCAAGAGGTTT 57.034 29.630 0.00 0.00 34.64 3.27
154 155 9.965902 AACTATCTGAAACATAATCAAGAGGTT 57.034 29.630 0.00 0.00 0.00 3.50
155 156 9.965902 AAACTATCTGAAACATAATCAAGAGGT 57.034 29.630 0.00 0.00 0.00 3.85
159 160 9.282247 GCACAAACTATCTGAAACATAATCAAG 57.718 33.333 0.00 0.00 0.00 3.02
160 161 8.791675 TGCACAAACTATCTGAAACATAATCAA 58.208 29.630 0.00 0.00 0.00 2.57
161 162 8.236586 GTGCACAAACTATCTGAAACATAATCA 58.763 33.333 13.17 0.00 0.00 2.57
162 163 8.454106 AGTGCACAAACTATCTGAAACATAATC 58.546 33.333 21.04 0.00 0.00 1.75
163 164 8.340618 AGTGCACAAACTATCTGAAACATAAT 57.659 30.769 21.04 0.00 0.00 1.28
164 165 7.661437 AGAGTGCACAAACTATCTGAAACATAA 59.339 33.333 21.04 0.00 0.00 1.90
165 166 7.118245 CAGAGTGCACAAACTATCTGAAACATA 59.882 37.037 20.97 0.00 28.23 2.29
166 167 6.000219 AGAGTGCACAAACTATCTGAAACAT 59.000 36.000 21.04 0.00 0.00 2.71
167 168 5.237127 CAGAGTGCACAAACTATCTGAAACA 59.763 40.000 20.97 0.00 28.23 2.83
168 169 5.334414 CCAGAGTGCACAAACTATCTGAAAC 60.334 44.000 25.07 0.00 28.23 2.78
169 170 4.756642 CCAGAGTGCACAAACTATCTGAAA 59.243 41.667 25.07 0.00 28.23 2.69
170 171 4.202357 ACCAGAGTGCACAAACTATCTGAA 60.202 41.667 25.07 0.00 28.23 3.02
171 172 3.324846 ACCAGAGTGCACAAACTATCTGA 59.675 43.478 25.07 0.00 28.23 3.27
172 173 3.668447 ACCAGAGTGCACAAACTATCTG 58.332 45.455 21.04 20.04 0.00 2.90
173 174 4.618460 CGTACCAGAGTGCACAAACTATCT 60.618 45.833 21.04 8.99 0.00 1.98
174 175 3.612860 CGTACCAGAGTGCACAAACTATC 59.387 47.826 21.04 6.51 0.00 2.08
175 176 3.006537 ACGTACCAGAGTGCACAAACTAT 59.993 43.478 21.04 9.17 0.00 2.12
176 177 2.363038 ACGTACCAGAGTGCACAAACTA 59.637 45.455 21.04 0.00 0.00 2.24
177 178 1.138266 ACGTACCAGAGTGCACAAACT 59.862 47.619 21.04 12.21 0.00 2.66
178 179 1.260561 CACGTACCAGAGTGCACAAAC 59.739 52.381 21.04 10.00 0.00 2.93
179 180 1.577468 CACGTACCAGAGTGCACAAA 58.423 50.000 21.04 0.00 0.00 2.83
180 181 0.249699 CCACGTACCAGAGTGCACAA 60.250 55.000 21.04 0.00 37.07 3.33
181 182 1.110518 TCCACGTACCAGAGTGCACA 61.111 55.000 21.04 0.00 37.07 4.57
182 183 0.246635 ATCCACGTACCAGAGTGCAC 59.753 55.000 9.40 9.40 37.07 4.57
183 184 0.530744 GATCCACGTACCAGAGTGCA 59.469 55.000 0.00 0.00 37.07 4.57
184 185 0.818296 AGATCCACGTACCAGAGTGC 59.182 55.000 0.00 0.00 37.07 4.40
185 186 1.064208 CGAGATCCACGTACCAGAGTG 59.936 57.143 0.00 0.00 38.05 3.51
186 187 1.065636 TCGAGATCCACGTACCAGAGT 60.066 52.381 9.18 0.00 0.00 3.24
187 188 1.331138 GTCGAGATCCACGTACCAGAG 59.669 57.143 9.18 0.00 0.00 3.35
188 189 1.376543 GTCGAGATCCACGTACCAGA 58.623 55.000 9.18 0.00 0.00 3.86
189 190 0.381089 GGTCGAGATCCACGTACCAG 59.619 60.000 17.43 0.00 34.12 4.00
190 191 0.034767 AGGTCGAGATCCACGTACCA 60.035 55.000 20.91 1.87 35.31 3.25
191 192 0.381089 CAGGTCGAGATCCACGTACC 59.619 60.000 15.97 15.97 34.14 3.34
192 193 0.248539 GCAGGTCGAGATCCACGTAC 60.249 60.000 9.18 6.79 0.00 3.67
193 194 1.712018 CGCAGGTCGAGATCCACGTA 61.712 60.000 9.18 0.00 41.67 3.57
194 195 2.885861 GCAGGTCGAGATCCACGT 59.114 61.111 9.18 0.00 0.00 4.49
195 196 2.278206 CGCAGGTCGAGATCCACG 60.278 66.667 3.92 3.92 41.67 4.94
196 197 3.197614 TCGCAGGTCGAGATCCAC 58.802 61.111 0.00 0.00 43.16 4.02
232 233 0.176680 ACATGTTGCGTGCCCAAAAA 59.823 45.000 0.00 0.00 0.00 1.94
233 234 0.176680 AACATGTTGCGTGCCCAAAA 59.823 45.000 11.07 0.00 0.00 2.44
234 235 0.176680 AAACATGTTGCGTGCCCAAA 59.823 45.000 12.82 0.00 0.00 3.28
235 236 0.529337 CAAACATGTTGCGTGCCCAA 60.529 50.000 12.82 0.00 0.00 4.12
236 237 1.067084 CAAACATGTTGCGTGCCCA 59.933 52.632 12.82 0.00 0.00 5.36
237 238 2.309501 GCAAACATGTTGCGTGCCC 61.310 57.895 18.81 0.00 35.58 5.36
238 239 3.233425 GCAAACATGTTGCGTGCC 58.767 55.556 18.81 5.35 35.58 5.01
243 244 1.005294 CTGCTCCGCAAACATGTTGC 61.005 55.000 12.82 15.91 38.41 4.17
244 245 0.592637 TCTGCTCCGCAAACATGTTG 59.407 50.000 12.82 7.69 38.41 3.33
245 246 1.538047 ATCTGCTCCGCAAACATGTT 58.462 45.000 4.92 4.92 38.41 2.71
246 247 2.401583 TATCTGCTCCGCAAACATGT 57.598 45.000 0.00 0.00 38.41 3.21
247 248 3.976793 ATTATCTGCTCCGCAAACATG 57.023 42.857 0.00 0.00 38.41 3.21
248 249 5.106948 CGAATATTATCTGCTCCGCAAACAT 60.107 40.000 0.00 0.00 38.41 2.71
249 250 4.211164 CGAATATTATCTGCTCCGCAAACA 59.789 41.667 0.00 0.00 38.41 2.83
250 251 4.447724 TCGAATATTATCTGCTCCGCAAAC 59.552 41.667 0.00 0.00 38.41 2.93
251 252 4.447724 GTCGAATATTATCTGCTCCGCAAA 59.552 41.667 0.00 0.00 38.41 3.68
252 253 3.987868 GTCGAATATTATCTGCTCCGCAA 59.012 43.478 0.00 0.00 38.41 4.85
253 254 3.255888 AGTCGAATATTATCTGCTCCGCA 59.744 43.478 0.00 0.00 36.92 5.69
254 255 3.839293 AGTCGAATATTATCTGCTCCGC 58.161 45.455 0.00 0.00 0.00 5.54
255 256 6.379386 TGTTAGTCGAATATTATCTGCTCCG 58.621 40.000 0.00 0.00 0.00 4.63
256 257 9.509855 CTATGTTAGTCGAATATTATCTGCTCC 57.490 37.037 0.00 0.00 0.00 4.70
257 258 9.509855 CCTATGTTAGTCGAATATTATCTGCTC 57.490 37.037 0.00 0.00 0.00 4.26
258 259 8.470805 CCCTATGTTAGTCGAATATTATCTGCT 58.529 37.037 0.00 0.00 0.00 4.24
259 260 7.707035 CCCCTATGTTAGTCGAATATTATCTGC 59.293 40.741 0.00 0.00 0.00 4.26
260 261 8.750298 ACCCCTATGTTAGTCGAATATTATCTG 58.250 37.037 0.00 0.00 0.00 2.90
261 262 8.896722 ACCCCTATGTTAGTCGAATATTATCT 57.103 34.615 0.00 0.00 0.00 1.98
263 264 9.765295 ACTACCCCTATGTTAGTCGAATATTAT 57.235 33.333 0.00 0.00 0.00 1.28
264 265 9.236006 GACTACCCCTATGTTAGTCGAATATTA 57.764 37.037 0.00 0.00 0.00 0.98
265 266 7.727186 TGACTACCCCTATGTTAGTCGAATATT 59.273 37.037 0.00 0.00 39.80 1.28
266 267 7.236529 TGACTACCCCTATGTTAGTCGAATAT 58.763 38.462 0.00 0.00 39.80 1.28
267 268 6.604171 TGACTACCCCTATGTTAGTCGAATA 58.396 40.000 0.00 0.00 39.80 1.75
268 269 5.452255 TGACTACCCCTATGTTAGTCGAAT 58.548 41.667 0.00 0.00 39.80 3.34
269 270 4.858850 TGACTACCCCTATGTTAGTCGAA 58.141 43.478 0.00 0.00 39.80 3.71
270 271 4.508551 TGACTACCCCTATGTTAGTCGA 57.491 45.455 0.00 0.00 39.80 4.20
271 272 5.587388 TTTGACTACCCCTATGTTAGTCG 57.413 43.478 0.00 0.00 39.80 4.18
272 273 6.326843 AGGATTTGACTACCCCTATGTTAGTC 59.673 42.308 0.00 0.00 38.04 2.59
273 274 6.210522 AGGATTTGACTACCCCTATGTTAGT 58.789 40.000 0.00 0.00 0.00 2.24
274 275 6.749036 AGGATTTGACTACCCCTATGTTAG 57.251 41.667 0.00 0.00 0.00 2.34
275 276 8.626917 TTTAGGATTTGACTACCCCTATGTTA 57.373 34.615 0.00 0.00 30.44 2.41
276 277 7.404980 TCTTTAGGATTTGACTACCCCTATGTT 59.595 37.037 0.00 0.00 30.44 2.71
277 278 6.906901 TCTTTAGGATTTGACTACCCCTATGT 59.093 38.462 0.00 0.00 30.44 2.29
278 279 7.374975 TCTTTAGGATTTGACTACCCCTATG 57.625 40.000 0.00 0.00 30.44 2.23
279 280 8.401955 TTTCTTTAGGATTTGACTACCCCTAT 57.598 34.615 0.00 0.00 30.44 2.57
280 281 7.681168 TCTTTCTTTAGGATTTGACTACCCCTA 59.319 37.037 0.00 0.00 0.00 3.53
281 282 6.504279 TCTTTCTTTAGGATTTGACTACCCCT 59.496 38.462 0.00 0.00 0.00 4.79
282 283 6.718294 TCTTTCTTTAGGATTTGACTACCCC 58.282 40.000 0.00 0.00 0.00 4.95
283 284 8.631480 TTTCTTTCTTTAGGATTTGACTACCC 57.369 34.615 0.00 0.00 0.00 3.69
284 285 9.503399 TCTTTCTTTCTTTAGGATTTGACTACC 57.497 33.333 0.00 0.00 0.00 3.18
315 316 7.562088 TGTTTTCTTGACTACCCCTATGTTTTT 59.438 33.333 0.00 0.00 0.00 1.94
316 317 7.064229 TGTTTTCTTGACTACCCCTATGTTTT 58.936 34.615 0.00 0.00 0.00 2.43
317 318 6.607019 TGTTTTCTTGACTACCCCTATGTTT 58.393 36.000 0.00 0.00 0.00 2.83
318 319 6.195600 TGTTTTCTTGACTACCCCTATGTT 57.804 37.500 0.00 0.00 0.00 2.71
319 320 5.836024 TGTTTTCTTGACTACCCCTATGT 57.164 39.130 0.00 0.00 0.00 2.29
320 321 8.801882 TTATTGTTTTCTTGACTACCCCTATG 57.198 34.615 0.00 0.00 0.00 2.23
321 322 9.990868 ATTTATTGTTTTCTTGACTACCCCTAT 57.009 29.630 0.00 0.00 0.00 2.57
323 324 9.462606 CTATTTATTGTTTTCTTGACTACCCCT 57.537 33.333 0.00 0.00 0.00 4.79
324 325 9.457436 TCTATTTATTGTTTTCTTGACTACCCC 57.543 33.333 0.00 0.00 0.00 4.95
334 335 8.448615 GCGTAGTTGGTCTATTTATTGTTTTCT 58.551 33.333 0.00 0.00 0.00 2.52
335 336 8.231837 TGCGTAGTTGGTCTATTTATTGTTTTC 58.768 33.333 0.00 0.00 0.00 2.29
336 337 8.101654 TGCGTAGTTGGTCTATTTATTGTTTT 57.898 30.769 0.00 0.00 0.00 2.43
337 338 7.604927 TCTGCGTAGTTGGTCTATTTATTGTTT 59.395 33.333 0.00 0.00 0.00 2.83
379 380 5.446709 ACACGTATGACTCGTTATATTCGG 58.553 41.667 0.00 0.00 39.55 4.30
391 719 2.443416 TCAGGCTGTACACGTATGACT 58.557 47.619 15.27 0.00 0.00 3.41
433 769 6.647895 CCCCAACAAAATCTTGAGAAAATGAG 59.352 38.462 0.00 0.00 36.33 2.90
554 894 1.820481 GAGGAGTCGGAGTCGGAGG 60.820 68.421 6.74 0.00 36.95 4.30
642 1914 2.450243 GTGGGTCAGGGGAGAGGA 59.550 66.667 0.00 0.00 0.00 3.71
643 1915 2.689034 GGTGGGTCAGGGGAGAGG 60.689 72.222 0.00 0.00 0.00 3.69
644 1916 1.538876 TTGGTGGGTCAGGGGAGAG 60.539 63.158 0.00 0.00 0.00 3.20
645 1917 1.846124 GTTGGTGGGTCAGGGGAGA 60.846 63.158 0.00 0.00 0.00 3.71
646 1918 2.757077 GTTGGTGGGTCAGGGGAG 59.243 66.667 0.00 0.00 0.00 4.30
647 1919 2.856988 GGTTGGTGGGTCAGGGGA 60.857 66.667 0.00 0.00 0.00 4.81
689 1961 4.798682 AGGGGTCTAGGGCACGGG 62.799 72.222 0.00 0.00 0.00 5.28
690 1962 3.155167 GAGGGGTCTAGGGCACGG 61.155 72.222 0.00 0.00 0.00 4.94
767 2039 4.148825 CAGCGGGGGAAGAGTCGG 62.149 72.222 0.00 0.00 0.00 4.79
768 2040 4.148825 CCAGCGGGGGAAGAGTCG 62.149 72.222 0.00 0.00 0.00 4.18
779 2051 1.740296 CGTACCTCAAACCCAGCGG 60.740 63.158 0.00 0.00 0.00 5.52
781 2053 1.019805 GCTCGTACCTCAAACCCAGC 61.020 60.000 0.00 0.00 0.00 4.85
782 2054 0.608640 AGCTCGTACCTCAAACCCAG 59.391 55.000 0.00 0.00 0.00 4.45
783 2055 0.320374 CAGCTCGTACCTCAAACCCA 59.680 55.000 0.00 0.00 0.00 4.51
786 2058 1.019805 GGCCAGCTCGTACCTCAAAC 61.020 60.000 0.00 0.00 0.00 2.93
798 2070 2.187946 GCGTATGTCAGGCCAGCT 59.812 61.111 5.01 0.00 31.67 4.24
802 2074 1.146358 GAACTCGCGTATGTCAGGCC 61.146 60.000 5.77 0.00 34.45 5.19
804 2076 1.828832 GAGAACTCGCGTATGTCAGG 58.171 55.000 5.77 0.00 0.00 3.86
805 2077 1.457738 CGAGAACTCGCGTATGTCAG 58.542 55.000 5.77 0.00 46.50 3.51
925 2220 0.675837 GGCACGGAAGAGGGTTAACC 60.676 60.000 16.85 16.85 40.67 2.85
969 2264 3.514417 GGAAGAATCCGCCTTGGC 58.486 61.111 0.75 0.75 35.59 4.52
979 2274 5.586243 CCATTGTGAATCAGTACGGAAGAAT 59.414 40.000 0.00 0.00 0.00 2.40
985 2280 1.327460 CGCCATTGTGAATCAGTACGG 59.673 52.381 0.00 0.00 0.00 4.02
995 2290 1.612146 TCCTCCTCCGCCATTGTGA 60.612 57.895 0.00 0.00 0.00 3.58
1004 2299 3.507009 GGTCGTCGTCCTCCTCCG 61.507 72.222 0.91 0.00 0.00 4.63
1097 2392 1.002544 GGACGGATGAGGGATGGATTC 59.997 57.143 0.00 0.00 0.00 2.52
1111 2406 0.764890 GGAATGGATGGATGGACGGA 59.235 55.000 0.00 0.00 0.00 4.69
1116 2411 4.343239 GGAAGAAAAGGAATGGATGGATGG 59.657 45.833 0.00 0.00 0.00 3.51
1117 2412 4.343239 GGGAAGAAAAGGAATGGATGGATG 59.657 45.833 0.00 0.00 0.00 3.51
1118 2413 4.550669 GGGAAGAAAAGGAATGGATGGAT 58.449 43.478 0.00 0.00 0.00 3.41
1119 2414 3.624707 CGGGAAGAAAAGGAATGGATGGA 60.625 47.826 0.00 0.00 0.00 3.41
1130 2429 1.403679 TGTTGTGCACGGGAAGAAAAG 59.596 47.619 13.13 0.00 0.00 2.27
1180 2479 0.242825 TGAGAAGGCGTACGAACAGG 59.757 55.000 21.65 0.00 0.00 4.00
1181 2480 1.920574 CATGAGAAGGCGTACGAACAG 59.079 52.381 21.65 0.00 0.00 3.16
1183 2482 0.645868 GCATGAGAAGGCGTACGAAC 59.354 55.000 21.65 11.02 0.00 3.95
1184 2483 0.459585 GGCATGAGAAGGCGTACGAA 60.460 55.000 21.65 0.00 0.00 3.85
1185 2484 1.141019 GGCATGAGAAGGCGTACGA 59.859 57.895 21.65 0.00 0.00 3.43
1186 2485 1.141881 AGGCATGAGAAGGCGTACG 59.858 57.895 11.84 11.84 36.55 3.67
1187 2486 1.432270 GCAGGCATGAGAAGGCGTAC 61.432 60.000 0.62 0.00 36.55 3.67
1188 2487 1.153369 GCAGGCATGAGAAGGCGTA 60.153 57.895 0.62 0.00 36.55 4.42
1189 2488 2.437359 GCAGGCATGAGAAGGCGT 60.437 61.111 0.62 0.00 36.55 5.68
1190 2489 3.207669 GGCAGGCATGAGAAGGCG 61.208 66.667 0.62 0.00 36.55 5.52
1191 2490 3.207669 CGGCAGGCATGAGAAGGC 61.208 66.667 0.62 0.00 0.00 4.35
1192 2491 3.207669 GCGGCAGGCATGAGAAGG 61.208 66.667 0.62 0.00 42.87 3.46
1193 2492 3.570638 CGCGGCAGGCATGAGAAG 61.571 66.667 0.62 0.00 43.84 2.85
1194 2493 3.899981 AACGCGGCAGGCATGAGAA 62.900 57.895 12.47 0.00 43.84 2.87
1195 2494 3.899981 AAACGCGGCAGGCATGAGA 62.900 57.895 12.47 0.00 43.84 3.27
1196 2495 3.386867 GAAACGCGGCAGGCATGAG 62.387 63.158 12.47 0.00 43.84 2.90
1197 2496 3.430862 GAAACGCGGCAGGCATGA 61.431 61.111 12.47 0.00 43.84 3.07
1198 2497 2.546645 AATGAAACGCGGCAGGCATG 62.547 55.000 12.47 0.00 43.84 4.06
1199 2498 1.876497 AAATGAAACGCGGCAGGCAT 61.876 50.000 12.47 3.63 43.84 4.40
1200 2499 2.081425 AAAATGAAACGCGGCAGGCA 62.081 50.000 12.47 0.98 43.84 4.75
1201 2500 1.344226 GAAAATGAAACGCGGCAGGC 61.344 55.000 12.47 0.00 38.69 4.85
1202 2501 0.240945 AGAAAATGAAACGCGGCAGG 59.759 50.000 12.47 0.00 0.00 4.85
1203 2502 2.050477 AAGAAAATGAAACGCGGCAG 57.950 45.000 12.47 0.00 0.00 4.85
1204 2503 2.500509 AAAGAAAATGAAACGCGGCA 57.499 40.000 12.47 5.99 0.00 5.69
1205 2504 2.659023 GCAAAAGAAAATGAAACGCGGC 60.659 45.455 12.47 0.00 0.00 6.53
1206 2505 2.537625 TGCAAAAGAAAATGAAACGCGG 59.462 40.909 12.47 0.00 0.00 6.46
1207 2506 3.361917 CCTGCAAAAGAAAATGAAACGCG 60.362 43.478 3.53 3.53 0.00 6.01
1208 2507 3.604543 GCCTGCAAAAGAAAATGAAACGC 60.605 43.478 0.00 0.00 0.00 4.84
1219 2518 0.030101 CGGTTTTCGCCTGCAAAAGA 59.970 50.000 0.00 0.00 0.00 2.52
1280 2579 0.323542 CTACTCTCCTGGTCACCGGT 60.324 60.000 0.00 0.00 0.00 5.28
1281 2580 1.668101 GCTACTCTCCTGGTCACCGG 61.668 65.000 0.00 0.00 0.00 5.28
1296 2595 0.320421 TTGAGGCGTTGTCAGGCTAC 60.320 55.000 0.00 0.00 44.86 3.58
1299 2598 0.674895 ATCTTGAGGCGTTGTCAGGC 60.675 55.000 0.00 0.00 0.00 4.85
1300 2599 1.081892 CATCTTGAGGCGTTGTCAGG 58.918 55.000 0.00 0.00 0.00 3.86
1303 2602 1.063174 GCATCATCTTGAGGCGTTGTC 59.937 52.381 0.00 0.00 44.36 3.18
1387 2686 0.744771 CTTGTTTAGCCCCTCCGAGC 60.745 60.000 0.00 0.00 0.00 5.03
1453 2752 7.676043 TCCTTCTTCTTCTTCTTCTTATCCTCA 59.324 37.037 0.00 0.00 0.00 3.86
1469 2768 4.235372 TCCTTCACCTTCTCCTTCTTCTT 58.765 43.478 0.00 0.00 0.00 2.52
1470 2769 3.837731 CTCCTTCACCTTCTCCTTCTTCT 59.162 47.826 0.00 0.00 0.00 2.85
1471 2770 3.055458 CCTCCTTCACCTTCTCCTTCTTC 60.055 52.174 0.00 0.00 0.00 2.87
1595 2897 1.609072 TCCCGACTGCAATATCTCTCG 59.391 52.381 0.00 0.00 0.00 4.04
1696 2998 4.335647 CCACCAGGCGGCTTCAGT 62.336 66.667 9.66 4.23 34.57 3.41
1759 3061 1.105363 CGAAGTCGTCGTCATCATCG 58.895 55.000 0.00 0.00 45.09 3.84
1930 3232 1.692411 GTGTCAGCAAACCCTTCCTT 58.308 50.000 0.00 0.00 0.00 3.36
1987 3289 1.815840 GCTAGAAGTTCCAGGGCGC 60.816 63.158 0.00 0.00 0.00 6.53
1988 3290 0.460987 CTGCTAGAAGTTCCAGGGCG 60.461 60.000 0.00 0.00 0.00 6.13
2016 3318 1.633852 CTCGGCTTGTTCTGCAGAGC 61.634 60.000 22.39 22.39 43.27 4.09
2193 3495 1.064166 CATCTGAACTGGGAAGGCCAT 60.064 52.381 5.01 0.00 35.15 4.40
2212 3514 1.754226 AGCCTTTTGTTTTTCCGCTCA 59.246 42.857 0.00 0.00 0.00 4.26
2433 3737 5.699299 GCAACTGCAGAAACCAGACATGG 62.699 52.174 23.35 0.00 46.24 3.66
2909 4255 3.446161 TCATACGTGTAACCTCTTCCTGG 59.554 47.826 0.00 0.00 0.00 4.45
2999 4345 5.767816 TGATTCTTAGCTGCTCGTATGTA 57.232 39.130 4.91 0.00 0.00 2.29
3164 4510 5.334879 CCACAGTTCCGAAAGTTTATTCTGG 60.335 44.000 0.00 0.00 0.00 3.86
3230 4578 1.410004 ACTCGGTCTCAAACACTGGA 58.590 50.000 0.00 0.00 0.00 3.86
3254 4602 2.290071 CCCACCGACAGTAATTGGAACT 60.290 50.000 0.00 0.00 0.00 3.01
3461 4809 1.902508 TCCACCTCTGAACTAGCAAGG 59.097 52.381 0.00 0.00 0.00 3.61
3482 4830 8.986477 AGTTTCTGTTACCATCAAATATTTGC 57.014 30.769 21.15 7.80 38.05 3.68
3614 4962 4.276926 ACTTGCTCAACCACTTTCATCTTC 59.723 41.667 0.00 0.00 0.00 2.87
3713 5061 1.507141 CGCGGGCAGTCAAGAAGTTT 61.507 55.000 0.00 0.00 0.00 2.66
4132 5484 6.599445 ACAGGAGAATATCTTTGCTGCTATT 58.401 36.000 0.00 0.00 0.00 1.73
4185 5537 5.391629 CCACCGAAAGTTTAATCAGGTTAGC 60.392 44.000 0.00 0.00 0.00 3.09
4478 5830 3.002583 TCGCCATCTGGAGCACCA 61.003 61.111 1.91 1.91 44.76 4.17
4653 6005 3.329542 GAGGGCGGGATCAGCACAA 62.330 63.158 15.56 0.00 41.23 3.33
4666 6018 5.299531 ACAGAAAAACTAAAGAACAGAGGGC 59.700 40.000 0.00 0.00 0.00 5.19
4667 6019 6.944234 ACAGAAAAACTAAAGAACAGAGGG 57.056 37.500 0.00 0.00 0.00 4.30
4962 6314 0.725686 CTGATGGCTGCGAAGAACTG 59.274 55.000 0.00 0.00 0.00 3.16
5134 6489 1.059913 CCTGGTCTCTGGTTGGAAGT 58.940 55.000 0.00 0.00 0.00 3.01
5205 6560 2.527624 AGGACCTCAGGCTGCACA 60.528 61.111 10.34 0.00 0.00 4.57
5310 6665 0.106519 ACACCAGCATATCCTTGGGC 60.107 55.000 0.00 0.00 36.28 5.36
5313 6668 4.264253 TCTTGAACACCAGCATATCCTTG 58.736 43.478 0.00 0.00 0.00 3.61
5382 6737 3.340789 GGTTTCAGCACCCACGTC 58.659 61.111 0.00 0.00 0.00 4.34
5406 6761 2.747446 ACTACAGCTGCAAATTTACCCG 59.253 45.455 15.27 0.00 0.00 5.28
5413 6768 2.756760 CCCATGAACTACAGCTGCAAAT 59.243 45.455 15.27 0.00 0.00 2.32
5416 6771 0.677731 GCCCATGAACTACAGCTGCA 60.678 55.000 15.27 3.14 0.00 4.41
5417 6772 1.709147 CGCCCATGAACTACAGCTGC 61.709 60.000 15.27 0.00 0.00 5.25
5418 6773 1.709147 GCGCCCATGAACTACAGCTG 61.709 60.000 13.48 13.48 0.00 4.24
5419 6774 1.450312 GCGCCCATGAACTACAGCT 60.450 57.895 0.00 0.00 0.00 4.24
5502 6859 9.720769 AACGAAGGATTTAAGAGAAAACTATCA 57.279 29.630 0.00 0.00 0.00 2.15
5505 6862 8.780249 CCAAACGAAGGATTTAAGAGAAAACTA 58.220 33.333 0.00 0.00 0.00 2.24
5507 6864 6.362551 GCCAAACGAAGGATTTAAGAGAAAAC 59.637 38.462 0.00 0.00 0.00 2.43
5510 6868 5.181245 CAGCCAAACGAAGGATTTAAGAGAA 59.819 40.000 0.00 0.00 0.00 2.87
5522 6880 3.325870 TGTATCTGTCAGCCAAACGAAG 58.674 45.455 0.00 0.00 0.00 3.79
5525 6883 2.688507 ACTGTATCTGTCAGCCAAACG 58.311 47.619 0.00 0.00 36.50 3.60
5528 6887 5.483685 AAAGTACTGTATCTGTCAGCCAA 57.516 39.130 0.00 0.00 36.50 4.52
5536 6895 7.752239 CCATGCAAAAGAAAAGTACTGTATCTG 59.248 37.037 0.00 0.00 0.00 2.90
5543 6902 6.772716 TCTCTTCCATGCAAAAGAAAAGTACT 59.227 34.615 9.85 0.00 31.45 2.73
5544 6903 6.970484 TCTCTTCCATGCAAAAGAAAAGTAC 58.030 36.000 9.85 0.00 31.45 2.73
5545 6904 7.309377 CCATCTCTTCCATGCAAAAGAAAAGTA 60.309 37.037 9.85 0.00 31.45 2.24
5546 6905 6.453092 CATCTCTTCCATGCAAAAGAAAAGT 58.547 36.000 9.85 0.00 31.45 2.66
5547 6906 5.867716 CCATCTCTTCCATGCAAAAGAAAAG 59.132 40.000 9.85 2.09 31.45 2.27
5548 6907 5.786311 CCATCTCTTCCATGCAAAAGAAAA 58.214 37.500 9.85 3.76 31.45 2.29
5549 6908 4.322198 GCCATCTCTTCCATGCAAAAGAAA 60.322 41.667 9.85 0.00 31.45 2.52
5550 6909 3.194116 GCCATCTCTTCCATGCAAAAGAA 59.806 43.478 9.85 4.24 31.45 2.52
5551 6910 2.756760 GCCATCTCTTCCATGCAAAAGA 59.243 45.455 0.00 0.00 0.00 2.52
5552 6911 2.494471 TGCCATCTCTTCCATGCAAAAG 59.506 45.455 0.00 0.00 0.00 2.27
5577 6936 9.470399 AAAGAACCCGTGACCTAATTAATATTT 57.530 29.630 0.00 0.00 0.00 1.40
5581 6940 7.668469 AGAAAAAGAACCCGTGACCTAATTAAT 59.332 33.333 0.00 0.00 0.00 1.40
5585 6944 4.981812 AGAAAAAGAACCCGTGACCTAAT 58.018 39.130 0.00 0.00 0.00 1.73
5592 6951 1.244816 GGGGAGAAAAAGAACCCGTG 58.755 55.000 0.00 0.00 42.90 4.94
5593 6952 0.848053 TGGGGAGAAAAAGAACCCGT 59.152 50.000 0.00 0.00 44.47 5.28
5595 6954 2.677542 ACTGGGGAGAAAAAGAACCC 57.322 50.000 0.00 0.00 41.84 4.11
5616 6975 5.147767 AGGGCTTCTGAAAACCACTAATTT 58.852 37.500 11.25 0.00 0.00 1.82
5653 7016 5.299782 TCCCAGTAAACATGTACACCAAAAC 59.700 40.000 0.00 0.00 0.00 2.43
5656 7020 4.708576 TCCCAGTAAACATGTACACCAA 57.291 40.909 0.00 0.00 0.00 3.67
5671 7035 2.107204 AGATTGCAGTCTGTTTCCCAGT 59.893 45.455 11.42 0.00 42.19 4.00
5679 7043 6.882610 TTGTAAATTCAGATTGCAGTCTGT 57.117 33.333 31.07 18.61 44.66 3.41
5706 7080 0.106708 AGCACGGAGACAGAAAGCAA 59.893 50.000 0.00 0.00 0.00 3.91
5765 7139 3.893763 CACACCGCGCCCAAACAA 61.894 61.111 0.00 0.00 0.00 2.83
5914 7288 2.158957 ACGACTGGAAAAAGAGAGTGCA 60.159 45.455 0.00 0.00 0.00 4.57
5931 7305 8.658499 ACAAGGGAAATATATAAACAGACGAC 57.342 34.615 0.00 0.00 0.00 4.34
5993 7369 3.614616 GCTCAAAATCGACATCGTCTTCT 59.385 43.478 0.54 0.00 40.80 2.85
6048 7424 6.766429 TCAGAGATACGCCAGAGTAATACTA 58.234 40.000 0.00 0.00 0.00 1.82
6062 7438 4.568359 CACAACCCAGAATTCAGAGATACG 59.432 45.833 8.44 0.00 0.00 3.06
6080 7456 7.945033 ATTCACAACAATCATTTACCACAAC 57.055 32.000 0.00 0.00 0.00 3.32
6202 7578 7.724061 ACCCTGTAGTTTCAACTCAAAATGTAT 59.276 33.333 0.00 0.00 40.37 2.29
6370 7762 9.083422 CAGTCCTAGGATATCAATTAGAGTTCA 57.917 37.037 16.27 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.