Multiple sequence alignment - TraesCS3D01G082100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G082100 chr3D 100.000 5516 0 0 1 5516 41665426 41670941 0.000000e+00 10187.0
1 TraesCS3D01G082100 chr3A 93.598 2843 138 25 2248 5058 53179023 53181853 0.000000e+00 4202.0
2 TraesCS3D01G082100 chr3A 92.503 2321 141 14 2250 4547 53036860 53039170 0.000000e+00 3291.0
3 TraesCS3D01G082100 chr3A 95.766 1370 50 5 883 2248 53177625 53178990 0.000000e+00 2202.0
4 TraesCS3D01G082100 chr3A 87.824 1544 154 18 724 2253 53035306 53036829 0.000000e+00 1779.0
5 TraesCS3D01G082100 chr3A 97.500 360 9 0 48 407 53034910 53035269 2.820000e-172 616.0
6 TraesCS3D01G082100 chr3A 86.538 364 40 7 4737 5097 53039311 53039668 5.180000e-105 392.0
7 TraesCS3D01G082100 chr3A 87.048 332 23 5 5182 5495 53039762 53040091 1.890000e-94 357.0
8 TraesCS3D01G082100 chr3A 84.416 308 41 7 411 713 180919385 180919690 4.180000e-76 296.0
9 TraesCS3D01G082100 chr3A 81.163 361 27 14 48 397 53177170 53177500 9.170000e-63 252.0
10 TraesCS3D01G082100 chr3A 82.625 259 24 8 5182 5421 53181958 53182214 5.600000e-50 209.0
11 TraesCS3D01G082100 chr3B 91.690 2804 178 20 2319 5097 64697476 64700249 0.000000e+00 3836.0
12 TraesCS3D01G082100 chr3B 91.802 1415 99 10 852 2256 64695935 64697342 0.000000e+00 1954.0
13 TraesCS3D01G082100 chr3B 87.115 357 30 6 53 407 64695451 64695793 1.860000e-104 390.0
14 TraesCS3D01G082100 chr1B 78.818 609 119 10 2581 3184 6071207 6071810 8.610000e-108 401.0
15 TraesCS3D01G082100 chr5D 86.395 294 33 7 416 704 314439672 314439381 1.150000e-81 315.0
16 TraesCS3D01G082100 chr2D 85.619 299 36 6 413 704 259721180 259721478 1.930000e-79 307.0
17 TraesCS3D01G082100 chr4D 85.185 297 38 6 413 704 250267931 250268226 3.230000e-77 300.0
18 TraesCS3D01G082100 chr4D 84.950 299 38 6 415 706 321119274 321118976 4.180000e-76 296.0
19 TraesCS3D01G082100 chr6D 84.950 299 40 4 411 706 144189547 144189251 1.160000e-76 298.0
20 TraesCS3D01G082100 chr6D 84.797 296 41 4 415 706 208295336 208295631 1.500000e-75 294.0
21 TraesCS3D01G082100 chr1A 85.085 295 41 3 415 706 146810180 146809886 1.160000e-76 298.0
22 TraesCS3D01G082100 chr1A 100.000 50 0 0 1 50 405131490 405131539 5.880000e-15 93.5
23 TraesCS3D01G082100 chr1A 96.296 54 1 1 1 54 25549976 25549924 2.740000e-13 87.9
24 TraesCS3D01G082100 chr1A 100.000 47 0 0 1 47 593703537 593703491 2.740000e-13 87.9
25 TraesCS3D01G082100 chr4A 84.158 303 44 4 413 711 253619485 253619787 1.940000e-74 291.0
26 TraesCS3D01G082100 chr4A 100.000 48 0 0 1 48 735183736 735183783 7.610000e-14 89.8
27 TraesCS3D01G082100 chr7B 100.000 49 0 0 1 49 121394647 121394695 2.120000e-14 91.6
28 TraesCS3D01G082100 chr7B 100.000 47 0 0 1 47 74656290 74656244 2.740000e-13 87.9
29 TraesCS3D01G082100 chr7D 100.000 47 0 0 1 47 576952442 576952396 2.740000e-13 87.9
30 TraesCS3D01G082100 chr7D 100.000 47 0 0 1 47 638621247 638621293 2.740000e-13 87.9
31 TraesCS3D01G082100 chr1D 100.000 47 0 0 1 47 487608785 487608831 2.740000e-13 87.9
32 TraesCS3D01G082100 chrUn 80.583 103 17 3 3080 3179 88582097 88581995 5.930000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G082100 chr3D 41665426 41670941 5515 False 10187.00 10187 100.000000 1 5516 1 chr3D.!!$F1 5515
1 TraesCS3D01G082100 chr3A 53177170 53182214 5044 False 1716.25 4202 88.288000 48 5421 4 chr3A.!!$F3 5373
2 TraesCS3D01G082100 chr3A 53034910 53040091 5181 False 1287.00 3291 90.282600 48 5495 5 chr3A.!!$F2 5447
3 TraesCS3D01G082100 chr3B 64695451 64700249 4798 False 2060.00 3836 90.202333 53 5097 3 chr3B.!!$F1 5044
4 TraesCS3D01G082100 chr1B 6071207 6071810 603 False 401.00 401 78.818000 2581 3184 1 chr1B.!!$F1 603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.315886 CCCACGCAAAACCCTAAACC 59.684 55.000 0.0 0.0 0.00 3.27 F
34 35 0.315886 CCACGCAAAACCCTAAACCC 59.684 55.000 0.0 0.0 0.00 4.11 F
622 634 0.322816 TTGCATGAGAGCCCACCTTC 60.323 55.000 0.0 0.0 0.00 3.46 F
1857 1895 0.321298 ACGCACCAACCACCTATGAC 60.321 55.000 0.0 0.0 0.00 3.06 F
2492 2617 4.192429 AGTACTGCAATTTTTGGATGGC 57.808 40.909 0.0 0.0 0.00 4.40 F
4426 4566 0.605319 TCATTTCCGTCCAGGTGCAC 60.605 55.000 8.8 8.8 41.99 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1236 1267 0.106769 TTGCCAGGAAGCTGTCAACA 60.107 50.000 0.00 0.0 0.00 3.33 R
1781 1819 2.585330 TGAGCTGCTTTTCATCCAACA 58.415 42.857 2.53 0.0 0.00 3.33 R
1899 1941 7.040892 TGAGCTATATTTCCTGAATGTCAATGC 60.041 37.037 0.00 0.0 0.00 3.56 R
3206 3334 1.462283 CAGTCACGAAACATGAGCCAG 59.538 52.381 0.00 0.0 0.00 4.85 R
4437 4577 0.249868 CAACCACAGCTTCGTCCTCA 60.250 55.000 0.00 0.0 0.00 3.86 R
5331 5578 0.107993 CATCACGGTGATGCAGAGGT 60.108 55.000 31.39 4.6 46.37 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.946947 CTGGATGTCAACCACCCAC 58.053 57.895 0.00 0.00 33.57 4.61
19 20 0.955428 CTGGATGTCAACCACCCACG 60.955 60.000 0.00 0.00 33.57 4.94
20 21 2.332654 GGATGTCAACCACCCACGC 61.333 63.158 0.00 0.00 0.00 5.34
21 22 1.599518 GATGTCAACCACCCACGCA 60.600 57.895 0.00 0.00 0.00 5.24
22 23 1.152860 ATGTCAACCACCCACGCAA 60.153 52.632 0.00 0.00 0.00 4.85
23 24 0.753479 ATGTCAACCACCCACGCAAA 60.753 50.000 0.00 0.00 0.00 3.68
24 25 0.965866 TGTCAACCACCCACGCAAAA 60.966 50.000 0.00 0.00 0.00 2.44
25 26 0.526739 GTCAACCACCCACGCAAAAC 60.527 55.000 0.00 0.00 0.00 2.43
26 27 1.227118 CAACCACCCACGCAAAACC 60.227 57.895 0.00 0.00 0.00 3.27
27 28 2.428085 AACCACCCACGCAAAACCC 61.428 57.895 0.00 0.00 0.00 4.11
28 29 2.520741 CCACCCACGCAAAACCCT 60.521 61.111 0.00 0.00 0.00 4.34
29 30 1.228306 CCACCCACGCAAAACCCTA 60.228 57.895 0.00 0.00 0.00 3.53
30 31 0.824182 CCACCCACGCAAAACCCTAA 60.824 55.000 0.00 0.00 0.00 2.69
31 32 1.033574 CACCCACGCAAAACCCTAAA 58.966 50.000 0.00 0.00 0.00 1.85
32 33 1.034356 ACCCACGCAAAACCCTAAAC 58.966 50.000 0.00 0.00 0.00 2.01
33 34 0.315886 CCCACGCAAAACCCTAAACC 59.684 55.000 0.00 0.00 0.00 3.27
34 35 0.315886 CCACGCAAAACCCTAAACCC 59.684 55.000 0.00 0.00 0.00 4.11
35 36 1.324383 CACGCAAAACCCTAAACCCT 58.676 50.000 0.00 0.00 0.00 4.34
36 37 1.000717 CACGCAAAACCCTAAACCCTG 60.001 52.381 0.00 0.00 0.00 4.45
37 38 1.324383 CGCAAAACCCTAAACCCTGT 58.676 50.000 0.00 0.00 0.00 4.00
38 39 1.000717 CGCAAAACCCTAAACCCTGTG 60.001 52.381 0.00 0.00 0.00 3.66
39 40 2.036387 GCAAAACCCTAAACCCTGTGT 58.964 47.619 0.00 0.00 0.00 3.72
40 41 2.432874 GCAAAACCCTAAACCCTGTGTT 59.567 45.455 0.00 0.00 39.43 3.32
42 43 4.689071 CAAAACCCTAAACCCTGTGTTTC 58.311 43.478 0.00 0.00 43.74 2.78
43 44 3.673543 AACCCTAAACCCTGTGTTTCA 57.326 42.857 0.00 0.00 43.74 2.69
44 45 3.673543 ACCCTAAACCCTGTGTTTCAA 57.326 42.857 0.00 0.00 43.74 2.69
45 46 3.293337 ACCCTAAACCCTGTGTTTCAAC 58.707 45.455 0.00 0.00 43.74 3.18
46 47 3.053170 ACCCTAAACCCTGTGTTTCAACT 60.053 43.478 0.00 0.00 43.74 3.16
53 54 5.767816 ACCCTGTGTTTCAACTAATTGTC 57.232 39.130 0.00 0.00 37.11 3.18
97 102 5.474532 AGTTCATTGTGAGCTTAGCATTTCA 59.525 36.000 7.07 0.00 34.12 2.69
136 141 6.621316 TTTTTACATTGTTTCAGCCGAGTA 57.379 33.333 0.00 0.00 0.00 2.59
238 243 7.062749 AGTCTTGACACCACTTTTATCAGTA 57.937 36.000 3.49 0.00 0.00 2.74
256 261 3.118112 CAGTACCAAGGCCAGATCTGAAT 60.118 47.826 24.62 6.39 0.00 2.57
349 361 1.449778 GGCCGGCAAGACTTAGGTC 60.450 63.158 30.85 1.22 42.41 3.85
407 419 6.477053 AGCAGTCAAGATACAGTCACATAT 57.523 37.500 0.00 0.00 0.00 1.78
408 420 7.588497 AGCAGTCAAGATACAGTCACATATA 57.412 36.000 0.00 0.00 0.00 0.86
409 421 8.187913 AGCAGTCAAGATACAGTCACATATAT 57.812 34.615 0.00 0.00 0.00 0.86
410 422 8.646004 AGCAGTCAAGATACAGTCACATATATT 58.354 33.333 0.00 0.00 0.00 1.28
411 423 9.265901 GCAGTCAAGATACAGTCACATATATTT 57.734 33.333 0.00 0.00 0.00 1.40
435 447 9.791801 TTTAGAGCATGATTAATAATGTAGCCA 57.208 29.630 13.40 0.00 0.00 4.75
436 448 9.964354 TTAGAGCATGATTAATAATGTAGCCAT 57.036 29.630 13.40 0.00 0.00 4.40
437 449 8.874744 AGAGCATGATTAATAATGTAGCCATT 57.125 30.769 13.40 0.00 43.62 3.16
438 450 8.737175 AGAGCATGATTAATAATGTAGCCATTG 58.263 33.333 13.40 0.00 41.37 2.82
439 451 8.640063 AGCATGATTAATAATGTAGCCATTGA 57.360 30.769 13.40 0.00 41.37 2.57
440 452 9.251440 AGCATGATTAATAATGTAGCCATTGAT 57.749 29.630 13.40 0.00 41.37 2.57
441 453 9.297586 GCATGATTAATAATGTAGCCATTGATG 57.702 33.333 13.40 0.00 41.37 3.07
455 467 5.852738 CCATTGATGGCTATAAGAAGTCG 57.147 43.478 0.00 0.00 41.75 4.18
456 468 5.300752 CCATTGATGGCTATAAGAAGTCGT 58.699 41.667 0.00 0.00 41.75 4.34
457 469 5.406780 CCATTGATGGCTATAAGAAGTCGTC 59.593 44.000 0.00 0.00 41.75 4.20
458 470 5.592104 TTGATGGCTATAAGAAGTCGTCA 57.408 39.130 0.00 0.00 43.55 4.35
459 471 5.791336 TGATGGCTATAAGAAGTCGTCAT 57.209 39.130 0.00 0.00 41.11 3.06
460 472 5.532557 TGATGGCTATAAGAAGTCGTCATG 58.467 41.667 0.00 0.00 41.11 3.07
461 473 5.069119 TGATGGCTATAAGAAGTCGTCATGT 59.931 40.000 0.00 0.00 41.11 3.21
462 474 4.933330 TGGCTATAAGAAGTCGTCATGTC 58.067 43.478 0.00 0.00 0.00 3.06
463 475 4.401202 TGGCTATAAGAAGTCGTCATGTCA 59.599 41.667 0.00 0.00 0.00 3.58
464 476 5.069119 TGGCTATAAGAAGTCGTCATGTCAT 59.931 40.000 0.00 0.00 0.00 3.06
465 477 5.631512 GGCTATAAGAAGTCGTCATGTCATC 59.368 44.000 0.00 0.00 0.00 2.92
466 478 6.442952 GCTATAAGAAGTCGTCATGTCATCT 58.557 40.000 0.00 0.00 0.00 2.90
467 479 7.308649 GGCTATAAGAAGTCGTCATGTCATCTA 60.309 40.741 0.00 0.00 0.00 1.98
468 480 8.240682 GCTATAAGAAGTCGTCATGTCATCTAT 58.759 37.037 0.00 0.00 0.00 1.98
471 483 6.007936 AGAAGTCGTCATGTCATCTATAGC 57.992 41.667 0.00 0.00 0.00 2.97
472 484 4.775058 AGTCGTCATGTCATCTATAGCC 57.225 45.455 0.00 0.00 0.00 3.93
473 485 4.145052 AGTCGTCATGTCATCTATAGCCA 58.855 43.478 0.00 0.00 0.00 4.75
474 486 4.769488 AGTCGTCATGTCATCTATAGCCAT 59.231 41.667 0.00 0.00 0.00 4.40
475 487 5.244851 AGTCGTCATGTCATCTATAGCCATT 59.755 40.000 0.00 0.00 0.00 3.16
476 488 6.434340 AGTCGTCATGTCATCTATAGCCATTA 59.566 38.462 0.00 0.00 0.00 1.90
477 489 7.123397 AGTCGTCATGTCATCTATAGCCATTAT 59.877 37.037 0.00 0.00 0.00 1.28
478 490 7.761704 GTCGTCATGTCATCTATAGCCATTATT 59.238 37.037 0.00 0.00 0.00 1.40
479 491 8.314021 TCGTCATGTCATCTATAGCCATTATTT 58.686 33.333 0.00 0.00 0.00 1.40
480 492 9.586435 CGTCATGTCATCTATAGCCATTATTTA 57.414 33.333 0.00 0.00 0.00 1.40
495 507 9.519191 AGCCATTATTTATATGCACTCATACAA 57.481 29.630 0.00 0.00 37.94 2.41
504 516 5.700722 ATGCACTCATACAATAATGCAGG 57.299 39.130 2.94 0.00 45.42 4.85
505 517 3.316029 TGCACTCATACAATAATGCAGGC 59.684 43.478 0.00 0.00 38.11 4.85
506 518 3.567164 GCACTCATACAATAATGCAGGCT 59.433 43.478 0.00 0.00 33.27 4.58
507 519 4.756642 GCACTCATACAATAATGCAGGCTA 59.243 41.667 0.00 0.00 33.27 3.93
508 520 5.413833 GCACTCATACAATAATGCAGGCTAT 59.586 40.000 0.00 0.00 33.27 2.97
509 521 6.595326 GCACTCATACAATAATGCAGGCTATA 59.405 38.462 0.00 0.00 33.27 1.31
510 522 7.119699 GCACTCATACAATAATGCAGGCTATAA 59.880 37.037 0.00 0.00 33.27 0.98
511 523 8.663025 CACTCATACAATAATGCAGGCTATAAG 58.337 37.037 0.00 0.00 0.00 1.73
512 524 7.826252 ACTCATACAATAATGCAGGCTATAAGG 59.174 37.037 0.00 0.00 0.00 2.69
513 525 7.689299 TCATACAATAATGCAGGCTATAAGGT 58.311 34.615 0.00 0.00 0.00 3.50
514 526 8.163408 TCATACAATAATGCAGGCTATAAGGTT 58.837 33.333 0.00 0.00 0.00 3.50
515 527 6.639632 ACAATAATGCAGGCTATAAGGTTG 57.360 37.500 0.00 0.00 0.00 3.77
516 528 5.536161 ACAATAATGCAGGCTATAAGGTTGG 59.464 40.000 0.00 0.00 0.00 3.77
517 529 1.986882 ATGCAGGCTATAAGGTTGGC 58.013 50.000 0.00 0.00 0.00 4.52
518 530 0.918983 TGCAGGCTATAAGGTTGGCT 59.081 50.000 0.00 0.00 38.92 4.75
520 532 2.717639 CAGGCTATAAGGTTGGCTGT 57.282 50.000 7.47 0.00 46.16 4.40
521 533 3.004752 CAGGCTATAAGGTTGGCTGTT 57.995 47.619 7.47 0.00 46.16 3.16
522 534 4.150897 CAGGCTATAAGGTTGGCTGTTA 57.849 45.455 7.47 0.00 46.16 2.41
523 535 4.718961 CAGGCTATAAGGTTGGCTGTTAT 58.281 43.478 7.47 0.00 46.16 1.89
524 536 5.865085 CAGGCTATAAGGTTGGCTGTTATA 58.135 41.667 7.47 0.00 46.16 0.98
525 537 5.701290 CAGGCTATAAGGTTGGCTGTTATAC 59.299 44.000 7.47 0.00 46.16 1.47
526 538 5.607171 AGGCTATAAGGTTGGCTGTTATACT 59.393 40.000 0.00 0.00 37.10 2.12
527 539 6.785963 AGGCTATAAGGTTGGCTGTTATACTA 59.214 38.462 0.00 0.00 37.10 1.82
528 540 7.291651 AGGCTATAAGGTTGGCTGTTATACTAA 59.708 37.037 0.00 0.00 37.10 2.24
529 541 8.101419 GGCTATAAGGTTGGCTGTTATACTAAT 58.899 37.037 0.00 0.00 0.00 1.73
560 572 9.527157 TTTCTATCTTCTCTCTTTCTCTCTTCA 57.473 33.333 0.00 0.00 0.00 3.02
561 573 8.506168 TCTATCTTCTCTCTTTCTCTCTTCAC 57.494 38.462 0.00 0.00 0.00 3.18
562 574 8.106462 TCTATCTTCTCTCTTTCTCTCTTCACA 58.894 37.037 0.00 0.00 0.00 3.58
563 575 7.722949 ATCTTCTCTCTTTCTCTCTTCACAT 57.277 36.000 0.00 0.00 0.00 3.21
564 576 7.537596 TCTTCTCTCTTTCTCTCTTCACATT 57.462 36.000 0.00 0.00 0.00 2.71
565 577 7.961351 TCTTCTCTCTTTCTCTCTTCACATTT 58.039 34.615 0.00 0.00 0.00 2.32
566 578 9.083422 TCTTCTCTCTTTCTCTCTTCACATTTA 57.917 33.333 0.00 0.00 0.00 1.40
567 579 9.874205 CTTCTCTCTTTCTCTCTTCACATTTAT 57.126 33.333 0.00 0.00 0.00 1.40
569 581 9.650539 TCTCTCTTTCTCTCTTCACATTTATTG 57.349 33.333 0.00 0.00 0.00 1.90
570 582 8.261492 TCTCTTTCTCTCTTCACATTTATTGC 57.739 34.615 0.00 0.00 0.00 3.56
571 583 7.879677 TCTCTTTCTCTCTTCACATTTATTGCA 59.120 33.333 0.00 0.00 0.00 4.08
572 584 8.571461 TCTTTCTCTCTTCACATTTATTGCAT 57.429 30.769 0.00 0.00 0.00 3.96
573 585 9.017509 TCTTTCTCTCTTCACATTTATTGCATT 57.982 29.630 0.00 0.00 0.00 3.56
574 586 9.635520 CTTTCTCTCTTCACATTTATTGCATTT 57.364 29.630 0.00 0.00 0.00 2.32
575 587 8.975410 TTCTCTCTTCACATTTATTGCATTTG 57.025 30.769 0.00 0.00 0.00 2.32
576 588 8.114331 TCTCTCTTCACATTTATTGCATTTGT 57.886 30.769 0.00 0.00 0.00 2.83
577 589 8.239314 TCTCTCTTCACATTTATTGCATTTGTC 58.761 33.333 0.00 0.00 0.00 3.18
578 590 8.114331 TCTCTTCACATTTATTGCATTTGTCT 57.886 30.769 0.00 0.00 0.00 3.41
579 591 8.579006 TCTCTTCACATTTATTGCATTTGTCTT 58.421 29.630 0.00 0.00 0.00 3.01
580 592 8.523523 TCTTCACATTTATTGCATTTGTCTTG 57.476 30.769 0.00 0.00 0.00 3.02
581 593 8.358895 TCTTCACATTTATTGCATTTGTCTTGA 58.641 29.630 0.00 0.00 0.00 3.02
582 594 8.883954 TTCACATTTATTGCATTTGTCTTGAA 57.116 26.923 0.00 0.00 0.00 2.69
583 595 8.883954 TCACATTTATTGCATTTGTCTTGAAA 57.116 26.923 0.00 0.00 0.00 2.69
584 596 9.491675 TCACATTTATTGCATTTGTCTTGAAAT 57.508 25.926 0.00 0.00 0.00 2.17
606 618 9.255304 GAAATATGTATATAGCTAGGCTCTTGC 57.745 37.037 0.00 0.00 40.44 4.01
607 619 7.904558 ATATGTATATAGCTAGGCTCTTGCA 57.095 36.000 0.00 0.00 40.44 4.08
608 620 6.805016 ATGTATATAGCTAGGCTCTTGCAT 57.195 37.500 0.00 0.00 40.44 3.96
609 621 5.970592 TGTATATAGCTAGGCTCTTGCATG 58.029 41.667 0.00 0.00 40.44 4.06
610 622 5.716703 TGTATATAGCTAGGCTCTTGCATGA 59.283 40.000 0.00 1.92 40.44 3.07
611 623 3.681593 ATAGCTAGGCTCTTGCATGAG 57.318 47.619 22.03 22.03 40.44 2.90
612 624 1.493861 AGCTAGGCTCTTGCATGAGA 58.506 50.000 28.50 10.62 41.91 3.27
613 625 1.413445 AGCTAGGCTCTTGCATGAGAG 59.587 52.381 28.50 19.95 44.79 3.20
618 630 2.777969 CTCTTGCATGAGAGCCCAC 58.222 57.895 21.89 0.00 37.01 4.61
619 631 0.747283 CTCTTGCATGAGAGCCCACC 60.747 60.000 21.89 0.00 37.01 4.61
620 632 1.203441 TCTTGCATGAGAGCCCACCT 61.203 55.000 0.00 0.00 0.00 4.00
621 633 0.323178 CTTGCATGAGAGCCCACCTT 60.323 55.000 0.00 0.00 0.00 3.50
622 634 0.322816 TTGCATGAGAGCCCACCTTC 60.323 55.000 0.00 0.00 0.00 3.46
623 635 1.452833 GCATGAGAGCCCACCTTCC 60.453 63.158 0.00 0.00 0.00 3.46
624 636 1.919600 GCATGAGAGCCCACCTTCCT 61.920 60.000 0.00 0.00 0.00 3.36
625 637 0.622665 CATGAGAGCCCACCTTCCTT 59.377 55.000 0.00 0.00 0.00 3.36
626 638 1.839994 CATGAGAGCCCACCTTCCTTA 59.160 52.381 0.00 0.00 0.00 2.69
627 639 1.276622 TGAGAGCCCACCTTCCTTAC 58.723 55.000 0.00 0.00 0.00 2.34
628 640 1.203313 TGAGAGCCCACCTTCCTTACT 60.203 52.381 0.00 0.00 0.00 2.24
629 641 1.909986 GAGAGCCCACCTTCCTTACTT 59.090 52.381 0.00 0.00 0.00 2.24
630 642 2.306219 GAGAGCCCACCTTCCTTACTTT 59.694 50.000 0.00 0.00 0.00 2.66
631 643 2.716969 AGAGCCCACCTTCCTTACTTTT 59.283 45.455 0.00 0.00 0.00 2.27
632 644 3.140332 AGAGCCCACCTTCCTTACTTTTT 59.860 43.478 0.00 0.00 0.00 1.94
633 645 3.497332 AGCCCACCTTCCTTACTTTTTC 58.503 45.455 0.00 0.00 0.00 2.29
634 646 3.140332 AGCCCACCTTCCTTACTTTTTCT 59.860 43.478 0.00 0.00 0.00 2.52
635 647 3.506455 GCCCACCTTCCTTACTTTTTCTC 59.494 47.826 0.00 0.00 0.00 2.87
636 648 4.725490 CCCACCTTCCTTACTTTTTCTCA 58.275 43.478 0.00 0.00 0.00 3.27
637 649 5.325239 CCCACCTTCCTTACTTTTTCTCAT 58.675 41.667 0.00 0.00 0.00 2.90
638 650 5.416013 CCCACCTTCCTTACTTTTTCTCATC 59.584 44.000 0.00 0.00 0.00 2.92
639 651 6.241645 CCACCTTCCTTACTTTTTCTCATCT 58.758 40.000 0.00 0.00 0.00 2.90
640 652 6.717084 CCACCTTCCTTACTTTTTCTCATCTT 59.283 38.462 0.00 0.00 0.00 2.40
641 653 7.231519 CCACCTTCCTTACTTTTTCTCATCTTT 59.768 37.037 0.00 0.00 0.00 2.52
642 654 8.293157 CACCTTCCTTACTTTTTCTCATCTTTC 58.707 37.037 0.00 0.00 0.00 2.62
643 655 8.221251 ACCTTCCTTACTTTTTCTCATCTTTCT 58.779 33.333 0.00 0.00 0.00 2.52
644 656 8.726068 CCTTCCTTACTTTTTCTCATCTTTCTC 58.274 37.037 0.00 0.00 0.00 2.87
645 657 9.500785 CTTCCTTACTTTTTCTCATCTTTCTCT 57.499 33.333 0.00 0.00 0.00 3.10
646 658 9.853177 TTCCTTACTTTTTCTCATCTTTCTCTT 57.147 29.630 0.00 0.00 0.00 2.85
647 659 9.853177 TCCTTACTTTTTCTCATCTTTCTCTTT 57.147 29.630 0.00 0.00 0.00 2.52
649 661 9.804547 CTTACTTTTTCTCATCTTTCTCTTTCG 57.195 33.333 0.00 0.00 0.00 3.46
650 662 6.663565 ACTTTTTCTCATCTTTCTCTTTCGC 58.336 36.000 0.00 0.00 0.00 4.70
651 663 6.260936 ACTTTTTCTCATCTTTCTCTTTCGCA 59.739 34.615 0.00 0.00 0.00 5.10
652 664 6.808008 TTTTCTCATCTTTCTCTTTCGCAT 57.192 33.333 0.00 0.00 0.00 4.73
653 665 7.905604 TTTTCTCATCTTTCTCTTTCGCATA 57.094 32.000 0.00 0.00 0.00 3.14
654 666 7.905604 TTTCTCATCTTTCTCTTTCGCATAA 57.094 32.000 0.00 0.00 0.00 1.90
655 667 7.531280 TTCTCATCTTTCTCTTTCGCATAAG 57.469 36.000 0.00 0.00 0.00 1.73
656 668 5.521735 TCTCATCTTTCTCTTTCGCATAAGC 59.478 40.000 0.00 0.00 37.42 3.09
657 669 5.178061 TCATCTTTCTCTTTCGCATAAGCA 58.822 37.500 0.00 0.00 42.27 3.91
658 670 5.643348 TCATCTTTCTCTTTCGCATAAGCAA 59.357 36.000 0.00 0.00 42.27 3.91
659 671 5.940192 TCTTTCTCTTTCGCATAAGCAAA 57.060 34.783 0.00 0.00 42.27 3.68
660 672 6.312399 TCTTTCTCTTTCGCATAAGCAAAA 57.688 33.333 0.00 0.00 42.27 2.44
661 673 6.734137 TCTTTCTCTTTCGCATAAGCAAAAA 58.266 32.000 0.00 0.00 42.27 1.94
662 674 7.370383 TCTTTCTCTTTCGCATAAGCAAAAAT 58.630 30.769 0.00 0.00 42.27 1.82
663 675 6.932901 TTCTCTTTCGCATAAGCAAAAATG 57.067 33.333 0.00 0.00 42.27 2.32
664 676 4.858692 TCTCTTTCGCATAAGCAAAAATGC 59.141 37.500 0.00 0.00 44.02 3.56
665 677 3.925913 TCTTTCGCATAAGCAAAAATGCC 59.074 39.130 2.00 0.00 44.50 4.40
666 678 3.309961 TTCGCATAAGCAAAAATGCCA 57.690 38.095 2.00 0.00 44.50 4.92
667 679 3.523606 TCGCATAAGCAAAAATGCCAT 57.476 38.095 2.00 0.00 44.50 4.40
668 680 3.188492 TCGCATAAGCAAAAATGCCATG 58.812 40.909 2.00 3.38 44.50 3.66
669 681 2.931325 CGCATAAGCAAAAATGCCATGT 59.069 40.909 12.00 0.00 44.50 3.21
670 682 4.111198 CGCATAAGCAAAAATGCCATGTA 58.889 39.130 12.00 0.00 44.50 2.29
671 683 4.565962 CGCATAAGCAAAAATGCCATGTAA 59.434 37.500 12.00 0.00 44.50 2.41
672 684 5.276489 CGCATAAGCAAAAATGCCATGTAAG 60.276 40.000 12.00 4.28 44.50 2.34
673 685 5.502869 GCATAAGCAAAAATGCCATGTAAGC 60.503 40.000 12.00 0.00 42.13 3.09
674 686 3.681593 AGCAAAAATGCCATGTAAGCA 57.318 38.095 0.00 0.00 45.94 3.91
675 687 3.592059 AGCAAAAATGCCATGTAAGCAG 58.408 40.909 1.68 0.00 44.90 4.24
676 688 2.674357 GCAAAAATGCCATGTAAGCAGG 59.326 45.455 1.68 0.00 44.90 4.85
677 689 2.674357 CAAAAATGCCATGTAAGCAGGC 59.326 45.455 0.00 0.00 44.90 4.85
684 696 2.485814 GCCATGTAAGCAGGCTATAAGC 59.514 50.000 0.00 0.00 44.92 3.09
699 711 6.787085 GCTATAAGCCCACTATTGTACTTG 57.213 41.667 0.00 0.00 34.48 3.16
700 712 5.701290 GCTATAAGCCCACTATTGTACTTGG 59.299 44.000 0.00 0.00 34.48 3.61
701 713 5.710409 ATAAGCCCACTATTGTACTTGGT 57.290 39.130 0.00 0.00 0.00 3.67
702 714 3.629142 AGCCCACTATTGTACTTGGTC 57.371 47.619 0.00 0.00 0.00 4.02
806 837 5.135508 ACCGCAAATTACGCTAGATCTAT 57.864 39.130 2.11 0.00 0.00 1.98
821 852 0.399949 TCTATCCTCGGGGGTTGCAT 60.400 55.000 0.00 0.00 36.25 3.96
835 866 3.004734 GGGTTGCATGGAATATACACTGC 59.995 47.826 1.94 0.00 0.00 4.40
850 881 1.066858 CACTGCCCACCTACTACACAG 60.067 57.143 0.00 0.00 0.00 3.66
883 914 2.488153 GTTTCCATTAGCACACCCAGTC 59.512 50.000 0.00 0.00 0.00 3.51
946 977 1.398390 GTTTCCATTAGCTCGCACTGG 59.602 52.381 0.00 0.00 0.00 4.00
970 1001 1.589803 ACTCCCAACAAACTACGCAC 58.410 50.000 0.00 0.00 0.00 5.34
976 1007 2.032030 CCAACAAACTACGCACTTCCAG 60.032 50.000 0.00 0.00 0.00 3.86
991 1022 1.573108 TCCAGATCCACTCCTCCAAC 58.427 55.000 0.00 0.00 0.00 3.77
999 1030 1.159664 ACTCCTCCAACCTCCAGCT 59.840 57.895 0.00 0.00 0.00 4.24
1236 1267 3.450817 TGTCATACGTCATGGAGGATGTT 59.549 43.478 11.53 0.00 38.04 2.71
1704 1742 2.421751 TTGTTTCGGTGGGTCAGAAA 57.578 45.000 0.00 0.00 37.75 2.52
1781 1819 8.752187 AGTATACAAGAAATCCAATGCACAAAT 58.248 29.630 5.50 0.00 0.00 2.32
1814 1852 3.636679 AGCAGCTCATAGTAGAACTCCA 58.363 45.455 0.00 0.00 0.00 3.86
1855 1893 1.365699 GTACGCACCAACCACCTATG 58.634 55.000 0.00 0.00 0.00 2.23
1857 1895 0.321298 ACGCACCAACCACCTATGAC 60.321 55.000 0.00 0.00 0.00 3.06
2172 2222 9.431887 GTGTCTTGAGTACAATTTGGATAGTAA 57.568 33.333 0.78 0.00 35.37 2.24
2255 2343 8.219868 TGTCTGTATCATATGGGTCATGAAAAT 58.780 33.333 0.00 0.00 36.08 1.82
2492 2617 4.192429 AGTACTGCAATTTTTGGATGGC 57.808 40.909 0.00 0.00 0.00 4.40
3045 3173 6.913170 ACCTTGTTTGTTGTATCTAAGCATG 58.087 36.000 0.00 0.00 0.00 4.06
3439 3567 0.942252 CAGTGCCATCGGATGTGATG 59.058 55.000 16.29 6.34 44.29 3.07
3506 3634 8.861086 TGTCCTAGATATGGAAGATTGTAGTTC 58.139 37.037 0.00 0.00 35.10 3.01
3515 3643 5.422331 TGGAAGATTGTAGTTCTAGTGGAGG 59.578 44.000 0.00 0.00 0.00 4.30
3529 3657 2.578021 AGTGGAGGTGGCAGTTATCATT 59.422 45.455 0.00 0.00 0.00 2.57
3567 3695 7.179076 GAGTTTACTCCATTTGAGGTACCTA 57.821 40.000 16.29 0.00 46.01 3.08
3638 3772 0.836606 TTGCAGACACTGGACTTGGA 59.163 50.000 0.00 0.00 30.08 3.53
3674 3814 4.880886 AAGAATTGCCACAAAGTTTTGC 57.119 36.364 4.58 0.00 41.79 3.68
3707 3847 1.067516 ACTCAAGCGCTTGCATTTTGT 59.932 42.857 38.89 25.91 42.66 2.83
3838 3978 1.209019 AGCTGACGATGCTGAGGAATT 59.791 47.619 0.00 0.00 39.56 2.17
3842 3982 3.875727 CTGACGATGCTGAGGAATTTCAT 59.124 43.478 0.00 0.00 0.00 2.57
3859 3999 8.810041 GGAATTTCATCCTTATCATTATGCCTT 58.190 33.333 0.00 0.00 36.50 4.35
3955 4095 6.217900 TCTGGACATTTACTTTGGGGGTTATA 59.782 38.462 0.00 0.00 0.00 0.98
4171 4311 5.178061 TCGTTACTCTACGGTTGACTGATA 58.822 41.667 0.00 0.00 41.67 2.15
4365 4505 3.111098 CAGCAGCTTTGTGTTTGAGTTC 58.889 45.455 0.00 0.00 0.00 3.01
4395 4535 2.820197 GGAAAACCTCCATTCACTCCAC 59.180 50.000 0.00 0.00 44.67 4.02
4417 4557 4.222114 CAAAGTGAAAGCTCATTTCCGTC 58.778 43.478 0.00 0.00 45.74 4.79
4426 4566 0.605319 TCATTTCCGTCCAGGTGCAC 60.605 55.000 8.80 8.80 41.99 4.57
4437 4577 1.004044 CCAGGTGCACCTCAAGAGAAT 59.996 52.381 35.79 9.26 46.65 2.40
4457 4597 0.249911 GAGGACGAAGCTGTGGTTGT 60.250 55.000 0.00 0.00 0.00 3.32
4501 4641 0.688487 TCCCAACCGTCCTAACCTTG 59.312 55.000 0.00 0.00 0.00 3.61
4502 4642 0.688487 CCCAACCGTCCTAACCTTGA 59.312 55.000 0.00 0.00 0.00 3.02
4507 4647 1.622312 ACCGTCCTAACCTTGAAGTCC 59.378 52.381 0.00 0.00 0.00 3.85
4508 4648 1.900486 CCGTCCTAACCTTGAAGTCCT 59.100 52.381 0.00 0.00 0.00 3.85
4511 4651 3.367498 CGTCCTAACCTTGAAGTCCTGAG 60.367 52.174 0.00 0.00 0.00 3.35
4531 4675 6.101650 TGAGATAGGGTAAGTACATGCATG 57.898 41.667 25.09 25.09 0.00 4.06
4603 4763 4.263462 TGGGAGATGTATGTGCCCAATATC 60.263 45.833 0.00 0.00 45.35 1.63
4614 4774 9.277783 GTATGTGCCCAATATCTCCAATATATC 57.722 37.037 0.00 0.00 0.00 1.63
4616 4776 7.875311 TGTGCCCAATATCTCCAATATATCAT 58.125 34.615 0.00 0.00 0.00 2.45
4617 4777 8.338493 TGTGCCCAATATCTCCAATATATCATT 58.662 33.333 0.00 0.00 0.00 2.57
4677 4837 9.243105 AGGAAGCAGAAGCAAATTAACTAATTA 57.757 29.630 0.00 0.00 45.49 1.40
4718 4878 6.080009 TGGAGTACCTACTACACTTCCTTTT 58.920 40.000 0.00 0.00 42.04 2.27
4726 4886 5.500645 ACTACACTTCCTTTTCAAGCAAC 57.499 39.130 0.00 0.00 0.00 4.17
4772 4932 5.023533 TCAACTATTATCTGTCTGCACCC 57.976 43.478 0.00 0.00 0.00 4.61
4792 4952 2.719979 CAGCTGATGAATGGCGGC 59.280 61.111 8.42 0.00 36.66 6.53
4796 4956 1.452651 CTGATGAATGGCGGCCACT 60.453 57.895 26.48 15.14 35.80 4.00
4813 4973 3.677424 GCCACTAAGAGCTTCTACCACTG 60.677 52.174 0.00 0.00 0.00 3.66
4820 4980 5.428184 AGAGCTTCTACCACTGCTTAATT 57.572 39.130 0.00 0.00 35.76 1.40
4822 4982 5.645497 AGAGCTTCTACCACTGCTTAATTTG 59.355 40.000 0.00 0.00 35.76 2.32
4831 4991 3.004629 CACTGCTTAATTTGTGCACCTGA 59.995 43.478 15.69 0.00 32.91 3.86
4838 5005 7.090173 GCTTAATTTGTGCACCTGAATTCTTA 58.910 34.615 15.69 6.91 0.00 2.10
4876 5044 6.690194 CAAGCTCTGGAATTGTAATAAGCT 57.310 37.500 0.00 0.00 40.37 3.74
4877 5045 7.792374 CAAGCTCTGGAATTGTAATAAGCTA 57.208 36.000 0.00 0.00 37.85 3.32
4878 5046 8.388484 CAAGCTCTGGAATTGTAATAAGCTAT 57.612 34.615 0.00 0.00 37.85 2.97
4898 5066 7.048512 AGCTATTACCTTTCATTCTTTACGCT 58.951 34.615 0.00 0.00 0.00 5.07
4981 5149 4.332543 CCTGATAGTGCGCAAAACTCATTA 59.667 41.667 14.00 0.00 0.00 1.90
4986 5154 2.030274 GTGCGCAAAACTCATTAACCCT 60.030 45.455 14.00 0.00 0.00 4.34
5008 5176 1.032014 TCCCTTTTGCTGCTTGACAC 58.968 50.000 0.00 0.00 0.00 3.67
5032 5200 5.987777 TTGTTGTTTTTGCAATGGATCTG 57.012 34.783 0.00 0.00 0.00 2.90
5033 5201 5.273674 TGTTGTTTTTGCAATGGATCTGA 57.726 34.783 0.00 0.00 0.00 3.27
5051 5219 9.231297 TGGATCTGAGTAGGAAAAATTTACTTG 57.769 33.333 0.00 0.00 32.49 3.16
5052 5220 8.184848 GGATCTGAGTAGGAAAAATTTACTTGC 58.815 37.037 0.00 0.00 32.49 4.01
5069 5237 2.418368 TGCCATTCCCATGAGTACAC 57.582 50.000 0.00 0.00 31.07 2.90
5079 5247 8.906867 CATTCCCATGAGTACACTTTGATATTT 58.093 33.333 0.00 0.00 31.07 1.40
5097 5265 4.954092 ATTTCTTCCGAGCTGATTTCAC 57.046 40.909 0.00 0.00 0.00 3.18
5098 5266 2.386661 TCTTCCGAGCTGATTTCACC 57.613 50.000 0.00 0.00 0.00 4.02
5099 5267 1.623311 TCTTCCGAGCTGATTTCACCA 59.377 47.619 0.00 0.00 0.00 4.17
5100 5268 2.237143 TCTTCCGAGCTGATTTCACCAT 59.763 45.455 0.00 0.00 0.00 3.55
5101 5269 2.028420 TCCGAGCTGATTTCACCATG 57.972 50.000 0.00 0.00 0.00 3.66
5102 5270 0.379669 CCGAGCTGATTTCACCATGC 59.620 55.000 0.00 0.00 0.00 4.06
5103 5271 1.376543 CGAGCTGATTTCACCATGCT 58.623 50.000 0.00 0.00 0.00 3.79
5104 5272 2.554142 CGAGCTGATTTCACCATGCTA 58.446 47.619 0.00 0.00 0.00 3.49
5105 5273 3.136763 CGAGCTGATTTCACCATGCTAT 58.863 45.455 0.00 0.00 0.00 2.97
5106 5274 4.309933 CGAGCTGATTTCACCATGCTATA 58.690 43.478 0.00 0.00 0.00 1.31
5107 5275 4.934001 CGAGCTGATTTCACCATGCTATAT 59.066 41.667 0.00 0.00 0.00 0.86
5108 5276 6.101997 CGAGCTGATTTCACCATGCTATATA 58.898 40.000 0.00 0.00 0.00 0.86
5109 5277 6.760298 CGAGCTGATTTCACCATGCTATATAT 59.240 38.462 0.00 0.00 0.00 0.86
5110 5278 7.279536 CGAGCTGATTTCACCATGCTATATATT 59.720 37.037 0.00 0.00 0.00 1.28
5111 5279 8.874744 AGCTGATTTCACCATGCTATATATTT 57.125 30.769 0.00 0.00 0.00 1.40
5112 5280 9.964354 AGCTGATTTCACCATGCTATATATTTA 57.036 29.630 0.00 0.00 0.00 1.40
5143 5311 4.867047 CCTGTTGATGCAACTAGAGTACAG 59.133 45.833 11.11 0.00 43.85 2.74
5144 5312 4.245660 TGTTGATGCAACTAGAGTACAGC 58.754 43.478 11.11 0.00 43.85 4.40
5145 5313 4.021104 TGTTGATGCAACTAGAGTACAGCT 60.021 41.667 11.11 0.00 43.85 4.24
5146 5314 5.185056 TGTTGATGCAACTAGAGTACAGCTA 59.815 40.000 11.11 0.00 43.85 3.32
5147 5315 6.127338 TGTTGATGCAACTAGAGTACAGCTAT 60.127 38.462 11.11 0.00 43.85 2.97
5148 5316 6.471233 TGATGCAACTAGAGTACAGCTATT 57.529 37.500 0.00 0.00 0.00 1.73
5149 5317 6.276091 TGATGCAACTAGAGTACAGCTATTG 58.724 40.000 0.00 5.08 0.00 1.90
5150 5318 5.914898 TGCAACTAGAGTACAGCTATTGA 57.085 39.130 0.00 0.00 0.00 2.57
5151 5319 6.280855 TGCAACTAGAGTACAGCTATTGAA 57.719 37.500 0.00 0.00 0.00 2.69
5152 5320 6.333416 TGCAACTAGAGTACAGCTATTGAAG 58.667 40.000 0.00 0.00 0.00 3.02
5153 5321 6.071334 TGCAACTAGAGTACAGCTATTGAAGT 60.071 38.462 0.00 0.00 0.00 3.01
5155 5323 7.974501 GCAACTAGAGTACAGCTATTGAAGTTA 59.025 37.037 0.00 0.00 0.00 2.24
5165 5374 6.886459 ACAGCTATTGAAGTTATCACAATGGT 59.114 34.615 0.00 0.00 37.92 3.55
5180 5389 3.987404 GGTGAGAGCGCCACAAAT 58.013 55.556 15.60 0.00 44.29 2.32
5186 5395 1.266718 GAGAGCGCCACAAATGTTTGA 59.733 47.619 2.29 0.00 40.55 2.69
5187 5396 1.680735 AGAGCGCCACAAATGTTTGAA 59.319 42.857 2.29 0.00 40.55 2.69
5188 5397 2.053627 GAGCGCCACAAATGTTTGAAG 58.946 47.619 2.29 4.31 40.55 3.02
5192 5401 3.305110 CGCCACAAATGTTTGAAGTACC 58.695 45.455 12.09 0.00 40.55 3.34
5193 5402 3.004315 CGCCACAAATGTTTGAAGTACCT 59.996 43.478 12.09 0.00 40.55 3.08
5194 5403 4.546570 GCCACAAATGTTTGAAGTACCTC 58.453 43.478 12.09 0.00 40.55 3.85
5195 5404 4.278419 GCCACAAATGTTTGAAGTACCTCT 59.722 41.667 12.09 0.00 40.55 3.69
5209 5439 7.620880 TGAAGTACCTCTTTGCTAATGTGTAT 58.379 34.615 0.00 0.00 36.40 2.29
5210 5440 8.755028 TGAAGTACCTCTTTGCTAATGTGTATA 58.245 33.333 0.00 0.00 36.40 1.47
5233 5463 3.955771 TGTTTCAGGTGCGTTTAGTTC 57.044 42.857 0.00 0.00 0.00 3.01
5280 5525 6.934083 TGCATTTTTAGGATTGTTTTCTTCCC 59.066 34.615 0.00 0.00 0.00 3.97
5292 5537 0.038166 TTCTTCCCCACACAGCCATC 59.962 55.000 0.00 0.00 0.00 3.51
5293 5538 1.133181 TCTTCCCCACACAGCCATCA 61.133 55.000 0.00 0.00 0.00 3.07
5296 5541 0.409092 TCCCCACACAGCCATCAAAT 59.591 50.000 0.00 0.00 0.00 2.32
5303 5548 4.024725 CCACACAGCCATCAAATTGTTTTG 60.025 41.667 0.00 0.00 42.98 2.44
5304 5549 3.560896 ACACAGCCATCAAATTGTTTTGC 59.439 39.130 0.00 0.00 41.66 3.68
5331 5578 1.157751 AAGAAGGGGGTCACCTCGA 59.842 57.895 0.00 0.00 44.33 4.04
5390 5638 5.850557 TTGCTTCTGGAATGAAAGTTTCA 57.149 34.783 20.14 20.14 45.01 2.69
5438 5686 5.409826 GTGGATGAAACTGAAACAGTCCTAG 59.590 44.000 4.88 0.00 44.62 3.02
5456 5704 9.083422 CAGTCCTAGGATATCAATTAGAGTTCA 57.917 37.037 16.27 0.00 0.00 3.18
5457 5705 9.308000 AGTCCTAGGATATCAATTAGAGTTCAG 57.692 37.037 16.27 0.00 0.00 3.02
5485 5734 7.352739 ACTTGCGAAAATGACTTAACAAGTAG 58.647 34.615 0.00 0.00 43.26 2.57
5495 5744 3.835395 ACTTAACAAGTAGCTCTGCCTCT 59.165 43.478 0.00 0.00 40.69 3.69
5496 5745 2.758736 AACAAGTAGCTCTGCCTCTG 57.241 50.000 0.00 0.00 0.00 3.35
5497 5746 0.248843 ACAAGTAGCTCTGCCTCTGC 59.751 55.000 0.00 0.00 38.26 4.26
5499 5748 0.248843 AAGTAGCTCTGCCTCTGCAC 59.751 55.000 0.00 0.00 44.23 4.57
5500 5749 0.902048 AGTAGCTCTGCCTCTGCACA 60.902 55.000 0.00 0.00 44.23 4.57
5501 5750 0.036952 GTAGCTCTGCCTCTGCACAA 60.037 55.000 0.00 0.00 44.23 3.33
5502 5751 0.036952 TAGCTCTGCCTCTGCACAAC 60.037 55.000 0.00 0.00 44.23 3.32
5503 5752 2.331132 GCTCTGCCTCTGCACAACC 61.331 63.158 0.00 0.00 44.23 3.77
5504 5753 1.071987 CTCTGCCTCTGCACAACCA 59.928 57.895 0.00 0.00 44.23 3.67
5505 5754 0.954449 CTCTGCCTCTGCACAACCAG 60.954 60.000 0.00 0.00 44.23 4.00
5506 5755 1.071987 CTGCCTCTGCACAACCAGA 59.928 57.895 0.00 0.00 44.23 3.86
5507 5756 0.535780 CTGCCTCTGCACAACCAGAA 60.536 55.000 0.00 0.00 44.23 3.02
5508 5757 0.106769 TGCCTCTGCACAACCAGAAA 60.107 50.000 0.00 0.00 44.23 2.52
5509 5758 0.312102 GCCTCTGCACAACCAGAAAC 59.688 55.000 0.00 0.00 41.02 2.78
5510 5759 1.972872 CCTCTGCACAACCAGAAACT 58.027 50.000 0.00 0.00 41.02 2.66
5511 5760 1.605710 CCTCTGCACAACCAGAAACTG 59.394 52.381 0.00 0.00 41.02 3.16
5512 5761 1.002033 CTCTGCACAACCAGAAACTGC 60.002 52.381 0.00 0.00 41.02 4.40
5513 5762 0.740149 CTGCACAACCAGAAACTGCA 59.260 50.000 0.00 0.00 36.46 4.41
5514 5763 1.134753 CTGCACAACCAGAAACTGCAA 59.865 47.619 0.00 0.00 37.41 4.08
5515 5764 1.547820 TGCACAACCAGAAACTGCAAA 59.452 42.857 0.00 0.00 34.97 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.169661 TTGCGTGGGTGGTTGACATC 61.170 55.000 0.00 0.00 0.00 3.06
4 5 0.753479 TTTGCGTGGGTGGTTGACAT 60.753 50.000 0.00 0.00 0.00 3.06
5 6 0.965866 TTTTGCGTGGGTGGTTGACA 60.966 50.000 0.00 0.00 0.00 3.58
6 7 0.526739 GTTTTGCGTGGGTGGTTGAC 60.527 55.000 0.00 0.00 0.00 3.18
7 8 1.668101 GGTTTTGCGTGGGTGGTTGA 61.668 55.000 0.00 0.00 0.00 3.18
8 9 1.227118 GGTTTTGCGTGGGTGGTTG 60.227 57.895 0.00 0.00 0.00 3.77
9 10 2.428085 GGGTTTTGCGTGGGTGGTT 61.428 57.895 0.00 0.00 0.00 3.67
10 11 1.997256 TAGGGTTTTGCGTGGGTGGT 61.997 55.000 0.00 0.00 0.00 4.16
11 12 0.824182 TTAGGGTTTTGCGTGGGTGG 60.824 55.000 0.00 0.00 0.00 4.61
12 13 1.033574 TTTAGGGTTTTGCGTGGGTG 58.966 50.000 0.00 0.00 0.00 4.61
13 14 1.034356 GTTTAGGGTTTTGCGTGGGT 58.966 50.000 0.00 0.00 0.00 4.51
14 15 0.315886 GGTTTAGGGTTTTGCGTGGG 59.684 55.000 0.00 0.00 0.00 4.61
15 16 0.315886 GGGTTTAGGGTTTTGCGTGG 59.684 55.000 0.00 0.00 0.00 4.94
16 17 1.000717 CAGGGTTTAGGGTTTTGCGTG 60.001 52.381 0.00 0.00 0.00 5.34
17 18 1.324383 CAGGGTTTAGGGTTTTGCGT 58.676 50.000 0.00 0.00 0.00 5.24
18 19 1.000717 CACAGGGTTTAGGGTTTTGCG 60.001 52.381 0.00 0.00 0.00 4.85
19 20 2.036387 ACACAGGGTTTAGGGTTTTGC 58.964 47.619 0.00 0.00 0.00 3.68
30 31 5.068591 GGACAATTAGTTGAAACACAGGGTT 59.931 40.000 4.81 0.00 38.95 4.11
31 32 4.583073 GGACAATTAGTTGAAACACAGGGT 59.417 41.667 4.81 0.00 38.71 4.34
32 33 4.320202 CGGACAATTAGTTGAAACACAGGG 60.320 45.833 4.81 0.00 38.71 4.45
33 34 4.274950 ACGGACAATTAGTTGAAACACAGG 59.725 41.667 4.81 0.00 38.71 4.00
34 35 5.418310 ACGGACAATTAGTTGAAACACAG 57.582 39.130 4.81 0.00 38.71 3.66
35 36 5.220892 GGAACGGACAATTAGTTGAAACACA 60.221 40.000 4.81 0.00 38.71 3.72
36 37 5.008316 AGGAACGGACAATTAGTTGAAACAC 59.992 40.000 4.81 0.00 38.71 3.32
37 38 5.127491 AGGAACGGACAATTAGTTGAAACA 58.873 37.500 4.81 0.00 38.71 2.83
38 39 5.237779 TGAGGAACGGACAATTAGTTGAAAC 59.762 40.000 4.81 0.00 38.71 2.78
39 40 5.369833 TGAGGAACGGACAATTAGTTGAAA 58.630 37.500 4.81 0.00 38.71 2.69
40 41 4.963373 TGAGGAACGGACAATTAGTTGAA 58.037 39.130 4.81 0.00 38.71 2.69
41 42 4.610605 TGAGGAACGGACAATTAGTTGA 57.389 40.909 4.81 0.00 38.71 3.18
42 43 5.880054 ATTGAGGAACGGACAATTAGTTG 57.120 39.130 0.00 0.00 41.20 3.16
43 44 5.585047 GCTATTGAGGAACGGACAATTAGTT 59.415 40.000 0.00 0.00 36.06 2.24
44 45 5.116882 GCTATTGAGGAACGGACAATTAGT 58.883 41.667 0.00 0.00 36.06 2.24
45 46 4.511826 GGCTATTGAGGAACGGACAATTAG 59.488 45.833 0.00 0.00 36.06 1.73
46 47 4.448210 GGCTATTGAGGAACGGACAATTA 58.552 43.478 0.00 0.00 36.06 1.40
53 54 1.339631 TGTTGGGCTATTGAGGAACGG 60.340 52.381 0.00 0.00 0.00 4.44
97 102 2.134789 AAAATTGCTCTCTCCGGCAT 57.865 45.000 0.00 0.00 38.30 4.40
136 141 3.382865 GCCTAGTAGCCCGTAGTTTAAGT 59.617 47.826 0.00 0.00 0.00 2.24
238 243 1.213926 GGATTCAGATCTGGCCTTGGT 59.786 52.381 22.42 0.00 32.66 3.67
339 351 6.069847 TCGGGGAAATAAAATGACCTAAGTCT 60.070 38.462 0.00 0.00 43.91 3.24
409 421 9.791801 TGGCTACATTATTAATCATGCTCTAAA 57.208 29.630 9.13 0.00 0.00 1.85
410 422 9.964354 ATGGCTACATTATTAATCATGCTCTAA 57.036 29.630 9.13 0.00 32.00 2.10
411 423 9.964354 AATGGCTACATTATTAATCATGCTCTA 57.036 29.630 9.13 0.00 45.17 2.43
412 424 8.737175 CAATGGCTACATTATTAATCATGCTCT 58.263 33.333 9.13 0.00 45.24 4.09
413 425 8.733458 TCAATGGCTACATTATTAATCATGCTC 58.267 33.333 9.13 0.41 45.24 4.26
414 426 8.640063 TCAATGGCTACATTATTAATCATGCT 57.360 30.769 9.13 1.30 45.24 3.79
415 427 9.297586 CATCAATGGCTACATTATTAATCATGC 57.702 33.333 9.13 0.00 45.24 4.06
416 428 9.797556 CCATCAATGGCTACATTATTAATCATG 57.202 33.333 7.88 7.88 45.24 3.07
434 446 5.985530 TGACGACTTCTTATAGCCATCAATG 59.014 40.000 0.00 0.00 0.00 2.82
435 447 6.161855 TGACGACTTCTTATAGCCATCAAT 57.838 37.500 0.00 0.00 0.00 2.57
436 448 5.592104 TGACGACTTCTTATAGCCATCAA 57.408 39.130 0.00 0.00 0.00 2.57
437 449 5.069119 ACATGACGACTTCTTATAGCCATCA 59.931 40.000 0.00 0.00 0.00 3.07
438 450 5.533482 ACATGACGACTTCTTATAGCCATC 58.467 41.667 0.00 0.00 0.00 3.51
439 451 5.069119 TGACATGACGACTTCTTATAGCCAT 59.931 40.000 0.00 0.00 0.00 4.40
440 452 4.401202 TGACATGACGACTTCTTATAGCCA 59.599 41.667 0.00 0.00 0.00 4.75
441 453 4.933330 TGACATGACGACTTCTTATAGCC 58.067 43.478 0.00 0.00 0.00 3.93
442 454 6.442952 AGATGACATGACGACTTCTTATAGC 58.557 40.000 0.00 0.00 0.00 2.97
445 457 8.240682 GCTATAGATGACATGACGACTTCTTAT 58.759 37.037 3.21 0.00 0.00 1.73
446 458 7.308649 GGCTATAGATGACATGACGACTTCTTA 60.309 40.741 3.21 0.00 0.00 2.10
447 459 6.442952 GCTATAGATGACATGACGACTTCTT 58.557 40.000 3.21 0.00 0.00 2.52
448 460 5.048364 GGCTATAGATGACATGACGACTTCT 60.048 44.000 3.21 4.09 0.00 2.85
449 461 5.157781 GGCTATAGATGACATGACGACTTC 58.842 45.833 3.21 0.00 0.00 3.01
450 462 4.584743 TGGCTATAGATGACATGACGACTT 59.415 41.667 3.21 0.00 0.00 3.01
451 463 4.145052 TGGCTATAGATGACATGACGACT 58.855 43.478 3.21 0.00 0.00 4.18
452 464 4.505313 TGGCTATAGATGACATGACGAC 57.495 45.455 3.21 0.00 0.00 4.34
453 465 5.728637 AATGGCTATAGATGACATGACGA 57.271 39.130 3.21 0.00 0.00 4.20
454 466 8.484641 AAATAATGGCTATAGATGACATGACG 57.515 34.615 3.21 0.00 0.00 4.35
469 481 9.519191 TTGTATGAGTGCATATAAATAATGGCT 57.481 29.630 0.00 0.00 39.09 4.75
478 490 8.949177 CCTGCATTATTGTATGAGTGCATATAA 58.051 33.333 0.00 0.00 41.17 0.98
479 491 7.066163 GCCTGCATTATTGTATGAGTGCATATA 59.934 37.037 0.00 0.00 41.17 0.86
480 492 6.127814 GCCTGCATTATTGTATGAGTGCATAT 60.128 38.462 0.00 0.00 41.17 1.78
481 493 5.181811 GCCTGCATTATTGTATGAGTGCATA 59.818 40.000 0.00 0.00 41.17 3.14
482 494 4.022589 GCCTGCATTATTGTATGAGTGCAT 60.023 41.667 0.00 0.00 41.17 3.96
483 495 3.316029 GCCTGCATTATTGTATGAGTGCA 59.684 43.478 0.00 0.00 39.94 4.57
484 496 3.567164 AGCCTGCATTATTGTATGAGTGC 59.433 43.478 0.00 0.00 0.00 4.40
485 497 8.552083 TTATAGCCTGCATTATTGTATGAGTG 57.448 34.615 0.00 0.00 0.00 3.51
486 498 7.826252 CCTTATAGCCTGCATTATTGTATGAGT 59.174 37.037 0.00 0.00 0.00 3.41
487 499 7.826252 ACCTTATAGCCTGCATTATTGTATGAG 59.174 37.037 0.00 0.00 0.00 2.90
488 500 7.689299 ACCTTATAGCCTGCATTATTGTATGA 58.311 34.615 0.00 0.00 0.00 2.15
489 501 7.928307 ACCTTATAGCCTGCATTATTGTATG 57.072 36.000 0.00 0.00 0.00 2.39
490 502 7.394359 CCAACCTTATAGCCTGCATTATTGTAT 59.606 37.037 0.00 0.00 0.00 2.29
491 503 6.714810 CCAACCTTATAGCCTGCATTATTGTA 59.285 38.462 0.00 0.00 0.00 2.41
492 504 5.536161 CCAACCTTATAGCCTGCATTATTGT 59.464 40.000 0.00 0.00 0.00 2.71
493 505 5.565439 GCCAACCTTATAGCCTGCATTATTG 60.565 44.000 0.00 0.00 0.00 1.90
494 506 4.524328 GCCAACCTTATAGCCTGCATTATT 59.476 41.667 0.00 0.00 0.00 1.40
495 507 4.082125 GCCAACCTTATAGCCTGCATTAT 58.918 43.478 0.00 0.00 0.00 1.28
496 508 3.138283 AGCCAACCTTATAGCCTGCATTA 59.862 43.478 0.00 0.00 0.00 1.90
497 509 2.091665 AGCCAACCTTATAGCCTGCATT 60.092 45.455 0.00 0.00 0.00 3.56
498 510 1.496429 AGCCAACCTTATAGCCTGCAT 59.504 47.619 0.00 0.00 0.00 3.96
499 511 0.918983 AGCCAACCTTATAGCCTGCA 59.081 50.000 0.00 0.00 0.00 4.41
500 512 1.312815 CAGCCAACCTTATAGCCTGC 58.687 55.000 0.00 0.00 0.00 4.85
501 513 2.717639 ACAGCCAACCTTATAGCCTG 57.282 50.000 0.00 0.00 0.00 4.85
502 514 5.607171 AGTATAACAGCCAACCTTATAGCCT 59.393 40.000 0.00 0.00 0.00 4.58
503 515 5.866207 AGTATAACAGCCAACCTTATAGCC 58.134 41.667 0.00 0.00 0.00 3.93
534 546 9.527157 TGAAGAGAGAAAGAGAGAAGATAGAAA 57.473 33.333 0.00 0.00 0.00 2.52
535 547 8.956426 GTGAAGAGAGAAAGAGAGAAGATAGAA 58.044 37.037 0.00 0.00 0.00 2.10
536 548 8.106462 TGTGAAGAGAGAAAGAGAGAAGATAGA 58.894 37.037 0.00 0.00 0.00 1.98
537 549 8.279970 TGTGAAGAGAGAAAGAGAGAAGATAG 57.720 38.462 0.00 0.00 0.00 2.08
538 550 8.821686 ATGTGAAGAGAGAAAGAGAGAAGATA 57.178 34.615 0.00 0.00 0.00 1.98
539 551 7.722949 ATGTGAAGAGAGAAAGAGAGAAGAT 57.277 36.000 0.00 0.00 0.00 2.40
540 552 7.537596 AATGTGAAGAGAGAAAGAGAGAAGA 57.462 36.000 0.00 0.00 0.00 2.87
541 553 9.874205 ATAAATGTGAAGAGAGAAAGAGAGAAG 57.126 33.333 0.00 0.00 0.00 2.85
543 555 9.650539 CAATAAATGTGAAGAGAGAAAGAGAGA 57.349 33.333 0.00 0.00 0.00 3.10
544 556 8.389603 GCAATAAATGTGAAGAGAGAAAGAGAG 58.610 37.037 0.00 0.00 0.00 3.20
545 557 7.879677 TGCAATAAATGTGAAGAGAGAAAGAGA 59.120 33.333 0.00 0.00 0.00 3.10
546 558 8.037382 TGCAATAAATGTGAAGAGAGAAAGAG 57.963 34.615 0.00 0.00 0.00 2.85
547 559 7.984422 TGCAATAAATGTGAAGAGAGAAAGA 57.016 32.000 0.00 0.00 0.00 2.52
548 560 9.635520 AAATGCAATAAATGTGAAGAGAGAAAG 57.364 29.630 0.00 0.00 0.00 2.62
549 561 9.414295 CAAATGCAATAAATGTGAAGAGAGAAA 57.586 29.630 0.00 0.00 0.00 2.52
550 562 8.579006 ACAAATGCAATAAATGTGAAGAGAGAA 58.421 29.630 0.00 0.00 0.00 2.87
551 563 8.114331 ACAAATGCAATAAATGTGAAGAGAGA 57.886 30.769 0.00 0.00 0.00 3.10
552 564 8.242053 AGACAAATGCAATAAATGTGAAGAGAG 58.758 33.333 0.00 0.00 0.00 3.20
553 565 8.114331 AGACAAATGCAATAAATGTGAAGAGA 57.886 30.769 0.00 0.00 0.00 3.10
554 566 8.644619 CAAGACAAATGCAATAAATGTGAAGAG 58.355 33.333 0.00 0.00 0.00 2.85
555 567 8.358895 TCAAGACAAATGCAATAAATGTGAAGA 58.641 29.630 0.00 0.00 0.00 2.87
556 568 8.523523 TCAAGACAAATGCAATAAATGTGAAG 57.476 30.769 0.00 0.00 0.00 3.02
557 569 8.883954 TTCAAGACAAATGCAATAAATGTGAA 57.116 26.923 0.00 0.00 0.00 3.18
558 570 8.883954 TTTCAAGACAAATGCAATAAATGTGA 57.116 26.923 0.00 0.00 0.00 3.58
580 592 9.255304 GCAAGAGCCTAGCTATATACATATTTC 57.745 37.037 0.00 0.00 39.88 2.17
581 593 8.762645 TGCAAGAGCCTAGCTATATACATATTT 58.237 33.333 0.00 0.00 39.88 1.40
582 594 8.311395 TGCAAGAGCCTAGCTATATACATATT 57.689 34.615 0.00 0.00 39.88 1.28
583 595 7.904558 TGCAAGAGCCTAGCTATATACATAT 57.095 36.000 0.00 0.00 39.88 1.78
584 596 7.561356 TCATGCAAGAGCCTAGCTATATACATA 59.439 37.037 0.00 0.00 39.88 2.29
585 597 6.382282 TCATGCAAGAGCCTAGCTATATACAT 59.618 38.462 0.00 0.00 39.88 2.29
586 598 5.716703 TCATGCAAGAGCCTAGCTATATACA 59.283 40.000 0.00 0.00 39.88 2.29
587 599 6.096141 TCTCATGCAAGAGCCTAGCTATATAC 59.904 42.308 14.07 0.00 39.88 1.47
588 600 6.190587 TCTCATGCAAGAGCCTAGCTATATA 58.809 40.000 14.07 0.00 39.88 0.86
589 601 5.022122 TCTCATGCAAGAGCCTAGCTATAT 58.978 41.667 14.07 0.00 39.88 0.86
590 602 4.411013 TCTCATGCAAGAGCCTAGCTATA 58.589 43.478 14.07 0.00 39.88 1.31
591 603 3.237746 TCTCATGCAAGAGCCTAGCTAT 58.762 45.455 14.07 0.00 39.88 2.97
592 604 2.627221 CTCTCATGCAAGAGCCTAGCTA 59.373 50.000 14.07 0.00 39.88 3.32
593 605 1.413445 CTCTCATGCAAGAGCCTAGCT 59.587 52.381 14.07 0.00 43.88 3.32
594 606 1.868469 CTCTCATGCAAGAGCCTAGC 58.132 55.000 14.07 0.00 41.13 3.42
600 612 0.747283 GGTGGGCTCTCATGCAAGAG 60.747 60.000 12.75 12.75 44.69 2.85
601 613 1.203441 AGGTGGGCTCTCATGCAAGA 61.203 55.000 0.00 0.00 34.04 3.02
602 614 0.323178 AAGGTGGGCTCTCATGCAAG 60.323 55.000 0.00 0.00 34.04 4.01
603 615 0.322816 GAAGGTGGGCTCTCATGCAA 60.323 55.000 0.00 0.00 34.04 4.08
604 616 1.300963 GAAGGTGGGCTCTCATGCA 59.699 57.895 0.00 0.00 34.04 3.96
605 617 1.452833 GGAAGGTGGGCTCTCATGC 60.453 63.158 0.00 0.00 0.00 4.06
606 618 0.622665 AAGGAAGGTGGGCTCTCATG 59.377 55.000 0.00 0.00 0.00 3.07
607 619 1.840635 GTAAGGAAGGTGGGCTCTCAT 59.159 52.381 0.00 0.00 0.00 2.90
608 620 1.203313 AGTAAGGAAGGTGGGCTCTCA 60.203 52.381 0.00 0.00 0.00 3.27
609 621 1.574263 AGTAAGGAAGGTGGGCTCTC 58.426 55.000 0.00 0.00 0.00 3.20
610 622 2.046280 AAGTAAGGAAGGTGGGCTCT 57.954 50.000 0.00 0.00 0.00 4.09
611 623 2.881111 AAAGTAAGGAAGGTGGGCTC 57.119 50.000 0.00 0.00 0.00 4.70
612 624 3.140332 AGAAAAAGTAAGGAAGGTGGGCT 59.860 43.478 0.00 0.00 0.00 5.19
613 625 3.497332 AGAAAAAGTAAGGAAGGTGGGC 58.503 45.455 0.00 0.00 0.00 5.36
614 626 4.725490 TGAGAAAAAGTAAGGAAGGTGGG 58.275 43.478 0.00 0.00 0.00 4.61
615 627 6.241645 AGATGAGAAAAAGTAAGGAAGGTGG 58.758 40.000 0.00 0.00 0.00 4.61
616 628 7.751768 AAGATGAGAAAAAGTAAGGAAGGTG 57.248 36.000 0.00 0.00 0.00 4.00
617 629 8.221251 AGAAAGATGAGAAAAAGTAAGGAAGGT 58.779 33.333 0.00 0.00 0.00 3.50
618 630 8.628630 AGAAAGATGAGAAAAAGTAAGGAAGG 57.371 34.615 0.00 0.00 0.00 3.46
619 631 9.500785 AGAGAAAGATGAGAAAAAGTAAGGAAG 57.499 33.333 0.00 0.00 0.00 3.46
620 632 9.853177 AAGAGAAAGATGAGAAAAAGTAAGGAA 57.147 29.630 0.00 0.00 0.00 3.36
621 633 9.853177 AAAGAGAAAGATGAGAAAAAGTAAGGA 57.147 29.630 0.00 0.00 0.00 3.36
623 635 9.804547 CGAAAGAGAAAGATGAGAAAAAGTAAG 57.195 33.333 0.00 0.00 0.00 2.34
624 636 8.283291 GCGAAAGAGAAAGATGAGAAAAAGTAA 58.717 33.333 0.00 0.00 0.00 2.24
625 637 7.441157 TGCGAAAGAGAAAGATGAGAAAAAGTA 59.559 33.333 0.00 0.00 0.00 2.24
626 638 6.260936 TGCGAAAGAGAAAGATGAGAAAAAGT 59.739 34.615 0.00 0.00 0.00 2.66
627 639 6.662616 TGCGAAAGAGAAAGATGAGAAAAAG 58.337 36.000 0.00 0.00 0.00 2.27
628 640 6.618287 TGCGAAAGAGAAAGATGAGAAAAA 57.382 33.333 0.00 0.00 0.00 1.94
629 641 6.808008 ATGCGAAAGAGAAAGATGAGAAAA 57.192 33.333 0.00 0.00 0.00 2.29
630 642 7.413438 GCTTATGCGAAAGAGAAAGATGAGAAA 60.413 37.037 2.24 0.00 0.00 2.52
631 643 6.036517 GCTTATGCGAAAGAGAAAGATGAGAA 59.963 38.462 2.24 0.00 0.00 2.87
632 644 5.521735 GCTTATGCGAAAGAGAAAGATGAGA 59.478 40.000 2.24 0.00 0.00 3.27
633 645 5.292834 TGCTTATGCGAAAGAGAAAGATGAG 59.707 40.000 2.24 0.00 43.34 2.90
634 646 5.178061 TGCTTATGCGAAAGAGAAAGATGA 58.822 37.500 2.24 0.00 43.34 2.92
635 647 5.475273 TGCTTATGCGAAAGAGAAAGATG 57.525 39.130 2.24 0.00 43.34 2.90
636 648 6.500684 TTTGCTTATGCGAAAGAGAAAGAT 57.499 33.333 0.85 0.00 43.34 2.40
637 649 5.940192 TTTGCTTATGCGAAAGAGAAAGA 57.060 34.783 0.85 0.00 43.34 2.52
646 658 3.309961 TGGCATTTTTGCTTATGCGAA 57.690 38.095 0.00 0.00 46.24 4.70
647 659 3.188492 CATGGCATTTTTGCTTATGCGA 58.812 40.909 0.00 0.00 46.24 5.10
648 660 2.931325 ACATGGCATTTTTGCTTATGCG 59.069 40.909 0.00 0.00 46.24 4.73
649 661 5.502869 GCTTACATGGCATTTTTGCTTATGC 60.503 40.000 0.00 0.00 44.93 3.14
650 662 5.581479 TGCTTACATGGCATTTTTGCTTATG 59.419 36.000 0.00 11.41 36.34 1.90
651 663 5.732633 TGCTTACATGGCATTTTTGCTTAT 58.267 33.333 0.00 0.00 34.56 1.73
652 664 5.144692 TGCTTACATGGCATTTTTGCTTA 57.855 34.783 0.00 0.00 34.56 3.09
653 665 3.998341 CTGCTTACATGGCATTTTTGCTT 59.002 39.130 0.00 0.00 39.07 3.91
654 666 3.592059 CTGCTTACATGGCATTTTTGCT 58.408 40.909 0.00 0.00 39.07 3.91
655 667 2.674357 CCTGCTTACATGGCATTTTTGC 59.326 45.455 0.00 1.17 39.07 3.68
656 668 2.674357 GCCTGCTTACATGGCATTTTTG 59.326 45.455 0.00 0.00 45.46 2.44
657 669 2.976589 GCCTGCTTACATGGCATTTTT 58.023 42.857 0.00 0.00 45.46 1.94
658 670 2.678471 GCCTGCTTACATGGCATTTT 57.322 45.000 0.00 0.00 45.46 1.82
663 675 2.485814 GCTTATAGCCTGCTTACATGGC 59.514 50.000 0.00 0.00 46.42 4.40
676 688 5.701290 CCAAGTACAATAGTGGGCTTATAGC 59.299 44.000 0.00 0.00 41.46 2.97
677 689 6.827727 ACCAAGTACAATAGTGGGCTTATAG 58.172 40.000 0.00 0.00 35.32 1.31
678 690 6.818281 ACCAAGTACAATAGTGGGCTTATA 57.182 37.500 0.00 0.00 35.32 0.98
679 691 5.681639 GACCAAGTACAATAGTGGGCTTAT 58.318 41.667 0.00 0.00 36.14 1.73
680 692 5.093849 GACCAAGTACAATAGTGGGCTTA 57.906 43.478 0.00 0.00 36.14 3.09
681 693 3.951663 GACCAAGTACAATAGTGGGCTT 58.048 45.455 0.00 0.00 36.14 4.35
682 694 3.182152 AGACCAAGTACAATAGTGGGCT 58.818 45.455 0.00 0.00 45.10 5.19
683 695 3.629142 AGACCAAGTACAATAGTGGGC 57.371 47.619 0.00 0.00 39.70 5.36
684 696 8.019656 AGTATAAGACCAAGTACAATAGTGGG 57.980 38.462 0.00 0.00 35.32 4.61
685 697 9.962783 GTAGTATAAGACCAAGTACAATAGTGG 57.037 37.037 0.00 0.00 37.17 4.00
692 704 9.251440 ACTGAATGTAGTATAAGACCAAGTACA 57.749 33.333 0.00 0.00 34.48 2.90
695 707 8.404000 CGTACTGAATGTAGTATAAGACCAAGT 58.596 37.037 0.00 0.00 35.75 3.16
696 708 8.404000 ACGTACTGAATGTAGTATAAGACCAAG 58.596 37.037 0.00 0.00 35.75 3.61
697 709 8.284945 ACGTACTGAATGTAGTATAAGACCAA 57.715 34.615 0.00 0.00 35.75 3.67
698 710 7.870509 ACGTACTGAATGTAGTATAAGACCA 57.129 36.000 0.00 0.00 35.75 4.02
716 728 1.588082 CCCGTTGGCACTACGTACT 59.412 57.895 10.47 0.00 37.30 2.73
806 837 3.727258 CCATGCAACCCCCGAGGA 61.727 66.667 0.00 0.00 39.89 3.71
821 852 2.487775 AGGTGGGCAGTGTATATTCCA 58.512 47.619 0.00 0.00 0.00 3.53
835 866 3.057033 GTGTGTACTGTGTAGTAGGTGGG 60.057 52.174 0.00 0.00 39.96 4.61
913 944 0.478072 TGGAAACTGGGTGTGCATCT 59.522 50.000 0.00 0.00 0.00 2.90
946 977 3.370061 GCGTAGTTTGTTGGGAGTATGAC 59.630 47.826 0.00 0.00 0.00 3.06
970 1001 1.871418 TGGAGGAGTGGATCTGGAAG 58.129 55.000 0.00 0.00 0.00 3.46
976 1007 0.833949 GGAGGTTGGAGGAGTGGATC 59.166 60.000 0.00 0.00 0.00 3.36
999 1030 2.665089 CCCCGTCACCACCTGCATA 61.665 63.158 0.00 0.00 0.00 3.14
1236 1267 0.106769 TTGCCAGGAAGCTGTCAACA 60.107 50.000 0.00 0.00 0.00 3.33
1704 1742 5.296151 TGAGAACTTTCTTCACATCAGGT 57.704 39.130 0.00 0.00 37.73 4.00
1707 1745 4.347876 TCCCTGAGAACTTTCTTCACATCA 59.652 41.667 0.00 0.00 37.73 3.07
1743 1781 9.436957 GATTTCTTGTATACTTCCTTGTCAAGA 57.563 33.333 14.42 0.00 38.23 3.02
1757 1795 8.530311 ACATTTGTGCATTGGATTTCTTGTATA 58.470 29.630 0.00 0.00 0.00 1.47
1758 1796 7.388437 ACATTTGTGCATTGGATTTCTTGTAT 58.612 30.769 0.00 0.00 0.00 2.29
1781 1819 2.585330 TGAGCTGCTTTTCATCCAACA 58.415 42.857 2.53 0.00 0.00 3.33
1814 1852 9.804758 CGTACCTCTTATTCTCAAGTAATTCTT 57.195 33.333 0.00 0.00 36.75 2.52
1899 1941 7.040892 TGAGCTATATTTCCTGAATGTCAATGC 60.041 37.037 0.00 0.00 0.00 3.56
2457 2582 9.944376 AAATTGCAGTACTATTCTTTCTACAGA 57.056 29.630 0.00 0.00 0.00 3.41
3045 3173 8.547967 TTTTGATTGTGTAGTCTTCTGGATAC 57.452 34.615 0.00 0.00 0.00 2.24
3206 3334 1.462283 CAGTCACGAAACATGAGCCAG 59.538 52.381 0.00 0.00 0.00 4.85
3461 3589 4.512571 GGACACGTAAAGCTCCAAAACTTA 59.487 41.667 0.00 0.00 0.00 2.24
3506 3634 2.766263 TGATAACTGCCACCTCCACTAG 59.234 50.000 0.00 0.00 0.00 2.57
3509 3637 2.717639 ATGATAACTGCCACCTCCAC 57.282 50.000 0.00 0.00 0.00 4.02
3515 3643 3.088532 TGGTCCAAATGATAACTGCCAC 58.911 45.455 0.00 0.00 0.00 5.01
3529 3657 3.655777 AGTAAACTCCCAAGATGGTCCAA 59.344 43.478 0.00 0.00 35.17 3.53
3567 3695 4.841246 ACCTTATCTATTCTCCGCAATCCT 59.159 41.667 0.00 0.00 0.00 3.24
3638 3772 7.939588 GTGGCAATTCTTTTATCCTAGTATCCT 59.060 37.037 0.00 0.00 0.00 3.24
3674 3814 2.158449 CGCTTGAGTTGCCTTAACAGAG 59.842 50.000 0.00 0.00 41.88 3.35
3707 3847 3.132289 CCCAACTATTCCTTCAGCGACTA 59.868 47.826 0.00 0.00 0.00 2.59
3838 3978 9.639563 TTTGTAAGGCATAATGATAAGGATGAA 57.360 29.630 0.00 0.00 0.00 2.57
3955 4095 1.852965 CCCTTGGGGTCCAATACTCAT 59.147 52.381 0.00 0.00 43.07 2.90
4171 4311 0.400213 TCGCTCAACCCCAGAAACAT 59.600 50.000 0.00 0.00 0.00 2.71
4365 4505 0.392595 GGAGGTTTTCCCAGCTACCG 60.393 60.000 0.00 0.00 40.37 4.02
4395 4535 4.222114 GACGGAAATGAGCTTTCACTTTG 58.778 43.478 0.00 0.00 44.29 2.77
4402 4542 1.073923 ACCTGGACGGAAATGAGCTTT 59.926 47.619 0.00 0.00 36.31 3.51
4408 4548 1.586154 GGTGCACCTGGACGGAAATG 61.586 60.000 29.12 0.00 37.24 2.32
4437 4577 0.249868 CAACCACAGCTTCGTCCTCA 60.250 55.000 0.00 0.00 0.00 3.86
4507 4647 5.791336 TGCATGTACTTACCCTATCTCAG 57.209 43.478 0.00 0.00 0.00 3.35
4508 4648 5.511373 GCATGCATGTACTTACCCTATCTCA 60.511 44.000 26.79 0.00 0.00 3.27
4511 4651 4.899502 AGCATGCATGTACTTACCCTATC 58.100 43.478 26.79 6.30 0.00 2.08
4516 4660 4.212214 GCTAGAAGCATGCATGTACTTACC 59.788 45.833 26.79 11.76 41.89 2.85
4531 4675 7.042389 GGATGTATGTAAAACTCAGCTAGAAGC 60.042 40.741 0.00 0.00 42.84 3.86
4626 4786 9.650539 CTGCAAATAGAGCTCATACATATAAGT 57.349 33.333 17.77 0.00 0.00 2.24
4628 4788 8.815912 TCCTGCAAATAGAGCTCATACATATAA 58.184 33.333 17.77 0.00 0.00 0.98
4629 4789 8.366359 TCCTGCAAATAGAGCTCATACATATA 57.634 34.615 17.77 0.00 0.00 0.86
4630 4790 7.250032 TCCTGCAAATAGAGCTCATACATAT 57.750 36.000 17.77 1.26 0.00 1.78
4677 4837 5.407407 ACTCCACTAATTGTCTTGACGAT 57.593 39.130 0.00 0.00 0.00 3.73
4693 4853 4.598022 AGGAAGTGTAGTAGGTACTCCAC 58.402 47.826 5.03 5.03 41.68 4.02
4713 4873 1.889170 GGAGGAGGTTGCTTGAAAAGG 59.111 52.381 0.00 0.00 46.35 3.11
4718 4878 2.623418 TAGAGGAGGAGGTTGCTTGA 57.377 50.000 0.00 0.00 0.00 3.02
4772 4932 1.355563 CGCCATTCATCAGCTGCAG 59.644 57.895 10.11 10.11 0.00 4.41
4792 4952 3.677424 GCAGTGGTAGAAGCTCTTAGTGG 60.677 52.174 0.00 0.00 0.00 4.00
4796 4956 5.995565 TTAAGCAGTGGTAGAAGCTCTTA 57.004 39.130 0.00 0.00 36.07 2.10
4813 4973 5.473039 AGAATTCAGGTGCACAAATTAAGC 58.527 37.500 20.43 9.22 0.00 3.09
4820 4980 6.899393 AAAGATAAGAATTCAGGTGCACAA 57.101 33.333 20.43 4.69 0.00 3.33
4876 5044 8.190122 TCGTAGCGTAAAGAATGAAAGGTAATA 58.810 33.333 0.00 0.00 0.00 0.98
4877 5045 7.037438 TCGTAGCGTAAAGAATGAAAGGTAAT 58.963 34.615 0.00 0.00 0.00 1.89
4878 5046 6.389091 TCGTAGCGTAAAGAATGAAAGGTAA 58.611 36.000 0.00 0.00 0.00 2.85
4898 5066 4.357142 GACGAAAACCTGATAGCATCGTA 58.643 43.478 6.56 0.00 41.52 3.43
4981 5149 1.140852 GCAGCAAAAGGGAAAAGGGTT 59.859 47.619 0.00 0.00 0.00 4.11
4986 5154 2.499289 TGTCAAGCAGCAAAAGGGAAAA 59.501 40.909 0.00 0.00 0.00 2.29
5008 5176 6.258287 TCAGATCCATTGCAAAAACAACAAAG 59.742 34.615 1.71 0.00 31.03 2.77
5032 5200 7.759886 GGAATGGCAAGTAAATTTTTCCTACTC 59.240 37.037 0.00 0.00 0.00 2.59
5033 5201 7.310423 GGGAATGGCAAGTAAATTTTTCCTACT 60.310 37.037 11.76 0.52 33.51 2.57
5051 5219 2.717639 AGTGTACTCATGGGAATGGC 57.282 50.000 0.00 0.00 0.00 4.40
5052 5220 4.588899 TCAAAGTGTACTCATGGGAATGG 58.411 43.478 0.00 0.00 0.00 3.16
5069 5237 6.857777 ATCAGCTCGGAAGAAATATCAAAG 57.142 37.500 0.00 0.00 41.32 2.77
5079 5247 1.623311 TGGTGAAATCAGCTCGGAAGA 59.377 47.619 13.17 0.00 44.12 2.87
5106 5274 8.938801 TGCATCAACAGGTATTGGATAAATAT 57.061 30.769 0.00 0.00 33.32 1.28
5107 5275 8.629158 GTTGCATCAACAGGTATTGGATAAATA 58.371 33.333 4.95 0.00 43.09 1.40
5108 5276 7.342799 AGTTGCATCAACAGGTATTGGATAAAT 59.657 33.333 11.63 0.00 45.66 1.40
5109 5277 6.663093 AGTTGCATCAACAGGTATTGGATAAA 59.337 34.615 11.63 0.00 45.66 1.40
5110 5278 6.186957 AGTTGCATCAACAGGTATTGGATAA 58.813 36.000 11.63 0.00 45.66 1.75
5111 5279 5.754782 AGTTGCATCAACAGGTATTGGATA 58.245 37.500 11.63 0.00 45.66 2.59
5112 5280 4.603131 AGTTGCATCAACAGGTATTGGAT 58.397 39.130 11.63 0.00 45.66 3.41
5113 5281 4.032960 AGTTGCATCAACAGGTATTGGA 57.967 40.909 11.63 0.00 45.66 3.53
5114 5282 5.185454 TCTAGTTGCATCAACAGGTATTGG 58.815 41.667 11.63 0.00 45.66 3.16
5115 5283 5.877012 ACTCTAGTTGCATCAACAGGTATTG 59.123 40.000 11.63 0.00 45.66 1.90
5116 5284 6.054860 ACTCTAGTTGCATCAACAGGTATT 57.945 37.500 11.63 0.00 45.66 1.89
5117 5285 5.683876 ACTCTAGTTGCATCAACAGGTAT 57.316 39.130 11.63 0.00 45.66 2.73
5118 5286 5.479027 TGTACTCTAGTTGCATCAACAGGTA 59.521 40.000 11.63 6.33 45.66 3.08
5119 5287 4.283467 TGTACTCTAGTTGCATCAACAGGT 59.717 41.667 11.63 7.09 45.66 4.00
5120 5288 4.820897 TGTACTCTAGTTGCATCAACAGG 58.179 43.478 11.63 4.58 45.66 4.00
5121 5289 4.328440 GCTGTACTCTAGTTGCATCAACAG 59.672 45.833 11.63 7.37 45.66 3.16
5122 5290 4.021104 AGCTGTACTCTAGTTGCATCAACA 60.021 41.667 11.63 0.00 45.66 3.33
5123 5291 4.499183 AGCTGTACTCTAGTTGCATCAAC 58.501 43.478 1.71 1.71 43.83 3.18
5124 5292 4.808414 AGCTGTACTCTAGTTGCATCAA 57.192 40.909 0.00 0.00 0.00 2.57
5125 5293 6.096846 TCAATAGCTGTACTCTAGTTGCATCA 59.903 38.462 0.00 0.00 0.00 3.07
5126 5294 6.507900 TCAATAGCTGTACTCTAGTTGCATC 58.492 40.000 0.00 0.00 0.00 3.91
5127 5295 6.471233 TCAATAGCTGTACTCTAGTTGCAT 57.529 37.500 0.00 0.00 0.00 3.96
5128 5296 5.914898 TCAATAGCTGTACTCTAGTTGCA 57.085 39.130 0.00 0.00 0.00 4.08
5129 5297 6.334202 ACTTCAATAGCTGTACTCTAGTTGC 58.666 40.000 0.00 0.00 0.00 4.17
5143 5311 7.320443 TCACCATTGTGATAACTTCAATAGC 57.680 36.000 0.00 0.00 46.40 2.97
5165 5374 1.001487 CAAACATTTGTGGCGCTCTCA 60.001 47.619 7.64 1.62 33.59 3.27
5169 5378 1.408702 ACTTCAAACATTTGTGGCGCT 59.591 42.857 7.64 0.00 39.18 5.92
5171 5380 3.004315 AGGTACTTCAAACATTTGTGGCG 59.996 43.478 4.36 0.00 39.18 5.69
5176 5385 6.507023 AGCAAAGAGGTACTTCAAACATTTG 58.493 36.000 7.82 9.43 41.55 2.32
5180 5389 6.770785 ACATTAGCAAAGAGGTACTTCAAACA 59.229 34.615 7.82 0.00 41.55 2.83
5186 5395 8.537016 TGTATACACATTAGCAAAGAGGTACTT 58.463 33.333 0.08 0.00 41.55 2.24
5187 5396 8.705594 ATGTATACACATTAGCAAAGAGGTACT 58.294 33.333 7.96 0.00 42.98 2.73
5188 5397 8.765219 CATGTATACACATTAGCAAAGAGGTAC 58.235 37.037 7.96 0.00 42.98 3.34
5192 5401 9.708222 GAAACATGTATACACATTAGCAAAGAG 57.292 33.333 7.96 0.00 42.98 2.85
5193 5402 9.225436 TGAAACATGTATACACATTAGCAAAGA 57.775 29.630 7.96 0.00 42.98 2.52
5194 5403 9.494479 CTGAAACATGTATACACATTAGCAAAG 57.506 33.333 7.96 0.00 42.98 2.77
5195 5404 8.458052 CCTGAAACATGTATACACATTAGCAAA 58.542 33.333 7.96 0.00 42.98 3.68
5209 5439 4.382291 ACTAAACGCACCTGAAACATGTA 58.618 39.130 0.00 0.00 0.00 2.29
5210 5440 3.211045 ACTAAACGCACCTGAAACATGT 58.789 40.909 0.00 0.00 0.00 3.21
5233 5463 5.730568 GCAGTAGAATTAATGCTGGGAAACG 60.731 44.000 6.17 0.00 44.99 3.60
5280 5525 3.389925 AACAATTTGATGGCTGTGTGG 57.610 42.857 2.79 0.00 0.00 4.17
5313 5560 1.157751 TCGAGGTGACCCCCTTCTT 59.842 57.895 0.00 0.00 34.03 2.52
5326 5573 1.142748 GGTGATGCAGAGGTCGAGG 59.857 63.158 0.00 0.00 0.00 4.63
5331 5578 0.107993 CATCACGGTGATGCAGAGGT 60.108 55.000 31.39 4.60 46.37 3.85
5390 5638 6.491403 ACAAGCAAAACATTGAATAGAGGAGT 59.509 34.615 0.00 0.00 0.00 3.85
5397 5645 6.990798 TCATCCACAAGCAAAACATTGAATA 58.009 32.000 0.00 0.00 0.00 1.75
5438 5686 8.341173 CAAGTTGCTGAACTCTAATTGATATCC 58.659 37.037 0.00 0.00 41.87 2.59
5456 5704 3.715628 AAGTCATTTTCGCAAGTTGCT 57.284 38.095 24.61 3.40 42.25 3.91
5457 5705 4.737765 TGTTAAGTCATTTTCGCAAGTTGC 59.262 37.500 18.18 18.18 40.69 4.17
5474 5723 4.180057 CAGAGGCAGAGCTACTTGTTAAG 58.820 47.826 0.00 0.00 0.00 1.85
5495 5744 1.180907 TTGCAGTTTCTGGTTGTGCA 58.819 45.000 0.00 0.00 42.24 4.57
5496 5745 2.292103 TTTGCAGTTTCTGGTTGTGC 57.708 45.000 0.00 0.00 34.62 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.