Multiple sequence alignment - TraesCS3D01G081700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G081700 chr3D 100.000 2540 0 0 1 2540 40997439 40999978 0.000000e+00 4691
1 TraesCS3D01G081700 chr3D 88.585 622 51 6 1571 2188 41050507 41051112 0.000000e+00 737
2 TraesCS3D01G081700 chr3D 98.876 356 4 0 2185 2540 580302772 580303127 9.910000e-179 636
3 TraesCS3D01G081700 chr3B 94.367 1580 75 3 1 1566 607481081 607482660 0.000000e+00 2412
4 TraesCS3D01G081700 chr2D 97.065 954 26 2 628 1580 112884868 112885820 0.000000e+00 1605
5 TraesCS3D01G081700 chr2D 97.634 634 15 0 1 634 112876655 112877288 0.000000e+00 1088
6 TraesCS3D01G081700 chr2D 99.153 354 3 0 2187 2540 646235202 646234849 2.760000e-179 638
7 TraesCS3D01G081700 chr2D 99.150 353 3 0 2188 2540 646518733 646519085 9.910000e-179 636
8 TraesCS3D01G081700 chr4B 81.076 1580 289 9 1 1574 294769967 294771542 0.000000e+00 1253
9 TraesCS3D01G081700 chr7D 90.969 908 73 2 604 1510 500980161 500979262 0.000000e+00 1214
10 TraesCS3D01G081700 chr7D 94.625 614 27 2 1 614 500988206 500987599 0.000000e+00 946
11 TraesCS3D01G081700 chr7D 99.150 353 3 0 2188 2540 572001135 572000783 9.910000e-179 636
12 TraesCS3D01G081700 chr7A 87.757 972 68 17 616 1567 610687716 610686776 0.000000e+00 1088
13 TraesCS3D01G081700 chr3A 88.764 623 54 12 1570 2188 52963029 52963639 0.000000e+00 749
14 TraesCS3D01G081700 chr6D 99.150 353 3 0 2188 2540 12289618 12289266 9.910000e-179 636
15 TraesCS3D01G081700 chr6D 98.876 356 4 0 2185 2540 15156971 15157326 9.910000e-179 636
16 TraesCS3D01G081700 chr6D 94.262 122 5 2 1459 1580 19672520 19672401 4.320000e-43 185
17 TraesCS3D01G081700 chr5D 99.150 353 3 0 2188 2540 563468336 563467984 9.910000e-179 636
18 TraesCS3D01G081700 chr4D 98.870 354 4 0 2187 2540 10836067 10836420 1.280000e-177 632
19 TraesCS3D01G081700 chr1D 98.873 355 3 1 2186 2540 441177479 441177832 1.280000e-177 632
20 TraesCS3D01G081700 chr2B 86.723 354 46 1 1228 1581 682175260 682174908 2.370000e-105 392


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G081700 chr3D 40997439 40999978 2539 False 4691 4691 100.000 1 2540 1 chr3D.!!$F1 2539
1 TraesCS3D01G081700 chr3D 41050507 41051112 605 False 737 737 88.585 1571 2188 1 chr3D.!!$F2 617
2 TraesCS3D01G081700 chr3B 607481081 607482660 1579 False 2412 2412 94.367 1 1566 1 chr3B.!!$F1 1565
3 TraesCS3D01G081700 chr2D 112884868 112885820 952 False 1605 1605 97.065 628 1580 1 chr2D.!!$F2 952
4 TraesCS3D01G081700 chr2D 112876655 112877288 633 False 1088 1088 97.634 1 634 1 chr2D.!!$F1 633
5 TraesCS3D01G081700 chr4B 294769967 294771542 1575 False 1253 1253 81.076 1 1574 1 chr4B.!!$F1 1573
6 TraesCS3D01G081700 chr7D 500979262 500980161 899 True 1214 1214 90.969 604 1510 1 chr7D.!!$R1 906
7 TraesCS3D01G081700 chr7D 500987599 500988206 607 True 946 946 94.625 1 614 1 chr7D.!!$R2 613
8 TraesCS3D01G081700 chr7A 610686776 610687716 940 True 1088 1088 87.757 616 1567 1 chr7A.!!$R1 951
9 TraesCS3D01G081700 chr3A 52963029 52963639 610 False 749 749 88.764 1570 2188 1 chr3A.!!$F1 618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
811 817 0.249531 TTCGACTACGGCTTTGTGCA 60.25 50.0 0.0 0.0 45.15 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2208 2249 0.036306 GGACTAATGGGGGCGTATGG 59.964 60.0 0.0 0.0 0.0 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 1.078848 GGCGAATGCTCACAGTCCT 60.079 57.895 0.00 0.00 37.61 3.85
97 98 0.981183 TTGACTCCTTATGTGCCCGT 59.019 50.000 0.00 0.00 0.00 5.28
502 504 2.154854 CCGTCAAGTCGGCATATCAT 57.845 50.000 0.00 0.00 43.96 2.45
690 692 5.003804 GCGTAAGGGGATTGAATGTGATAT 58.996 41.667 0.00 0.00 38.28 1.63
696 698 7.878621 AGGGGATTGAATGTGATATTCTCTA 57.121 36.000 3.63 0.00 0.00 2.43
708 710 5.528690 GTGATATTCTCTATTTGTGCTGCCA 59.471 40.000 0.00 0.00 0.00 4.92
811 817 0.249531 TTCGACTACGGCTTTGTGCA 60.250 50.000 0.00 0.00 45.15 4.57
907 916 4.806892 TGCTATGGAAATGGTGGAATCAT 58.193 39.130 0.00 0.00 0.00 2.45
1078 1088 8.550280 TGATGGGGATCAATTGAAAATCAATA 57.450 30.769 13.09 1.19 45.57 1.90
1148 1168 1.112113 ATCCGCGATAACACTGGAGT 58.888 50.000 8.23 0.00 31.10 3.85
1226 1246 2.959484 CGGAGGCTTGCCTTCAGGA 61.959 63.158 18.95 0.00 37.39 3.86
1366 1399 7.921041 TTCAGAGATATCCACCAGTTTATCT 57.079 36.000 0.00 0.00 34.84 1.98
1423 1456 6.208007 TGTTCCTCGAGACTGTAATAAAGTCA 59.792 38.462 15.71 0.00 45.38 3.41
1515 1548 0.401738 ATGTAAGTGTGCTGGTGGCT 59.598 50.000 0.00 0.00 42.39 4.75
1628 1661 2.942710 GCAGCATGGCAGCTTATAATG 58.057 47.619 8.43 0.00 43.70 1.90
1629 1662 2.352421 GCAGCATGGCAGCTTATAATGG 60.352 50.000 8.43 0.00 43.70 3.16
1630 1663 2.889045 CAGCATGGCAGCTTATAATGGT 59.111 45.455 8.43 0.00 43.70 3.55
1631 1664 3.319972 CAGCATGGCAGCTTATAATGGTT 59.680 43.478 8.43 0.00 43.70 3.67
1632 1665 3.571401 AGCATGGCAGCTTATAATGGTTC 59.429 43.478 5.75 0.00 43.70 3.62
1633 1666 3.318839 GCATGGCAGCTTATAATGGTTCA 59.681 43.478 0.00 0.00 0.00 3.18
1634 1667 4.021719 GCATGGCAGCTTATAATGGTTCAT 60.022 41.667 0.00 0.00 0.00 2.57
1635 1668 5.706916 CATGGCAGCTTATAATGGTTCATC 58.293 41.667 0.00 0.00 0.00 2.92
1636 1669 5.052693 TGGCAGCTTATAATGGTTCATCT 57.947 39.130 0.00 0.00 0.00 2.90
1637 1670 4.823442 TGGCAGCTTATAATGGTTCATCTG 59.177 41.667 0.00 0.00 0.00 2.90
1638 1671 4.320788 GGCAGCTTATAATGGTTCATCTGC 60.321 45.833 0.00 0.00 42.40 4.26
1639 1672 4.276678 GCAGCTTATAATGGTTCATCTGCA 59.723 41.667 0.00 0.00 42.59 4.41
1640 1673 5.562307 GCAGCTTATAATGGTTCATCTGCAG 60.562 44.000 7.63 7.63 42.59 4.41
1641 1674 5.761726 CAGCTTATAATGGTTCATCTGCAGA 59.238 40.000 20.79 20.79 0.00 4.26
1666 1703 4.398358 TCTCGATGCCGGGAATATTAGTAG 59.602 45.833 0.00 0.00 43.21 2.57
1667 1704 3.446161 TCGATGCCGGGAATATTAGTAGG 59.554 47.826 0.00 0.00 36.24 3.18
1685 1726 5.988287 AGTAGGAGTACTATATACGAGCCC 58.012 45.833 0.00 0.00 37.76 5.19
1704 1745 2.598589 CCAAGCGACAATCACATTTGG 58.401 47.619 0.00 0.00 0.00 3.28
1733 1774 3.065095 CACAAAACAAAACAATGGGCCAG 59.935 43.478 13.78 0.82 0.00 4.85
1853 1894 2.513204 CCCGTCATGCTGCTCCAG 60.513 66.667 0.00 0.00 34.12 3.86
1926 1967 2.227089 GATGAGGACCCACGACGCTT 62.227 60.000 0.00 0.00 0.00 4.68
1952 1993 3.005539 ACACGGCCCATGAGCTCT 61.006 61.111 16.19 0.00 0.00 4.09
1953 1994 2.513204 CACGGCCCATGAGCTCTG 60.513 66.667 16.19 10.42 0.00 3.35
2019 2060 3.365291 TATGGCGACCACTGGCGAC 62.365 63.158 13.90 11.97 35.80 5.19
2033 2074 2.335011 CGACAGATGCGCCGGATA 59.665 61.111 5.05 0.00 0.00 2.59
2054 2095 2.574399 GTCACCGAGCTCCTCACC 59.426 66.667 8.47 0.00 0.00 4.02
2081 2122 1.228894 AGTCCTCTCCTTCCGTGCA 60.229 57.895 0.00 0.00 0.00 4.57
2139 2180 3.393970 CTGCCAGCGGGGAAGAGA 61.394 66.667 4.64 0.00 46.79 3.10
2151 2192 0.528466 GGAAGAGATCGACATGCGCA 60.528 55.000 14.96 14.96 40.61 6.09
2174 2215 2.821366 CTGTCTGCGATGGTGGCC 60.821 66.667 0.00 0.00 0.00 5.36
2197 2238 3.806591 GCACCGTGCACTAGTAGAA 57.193 52.632 18.79 0.00 44.26 2.10
2198 2239 2.074547 GCACCGTGCACTAGTAGAAA 57.925 50.000 18.79 0.00 44.26 2.52
2199 2240 2.409975 GCACCGTGCACTAGTAGAAAA 58.590 47.619 18.79 0.00 44.26 2.29
2200 2241 2.803956 GCACCGTGCACTAGTAGAAAAA 59.196 45.455 18.79 0.00 44.26 1.94
2201 2242 3.120649 GCACCGTGCACTAGTAGAAAAAG 60.121 47.826 18.79 0.12 44.26 2.27
2202 2243 4.304110 CACCGTGCACTAGTAGAAAAAGA 58.696 43.478 16.19 0.00 0.00 2.52
2203 2244 4.386049 CACCGTGCACTAGTAGAAAAAGAG 59.614 45.833 16.19 0.00 0.00 2.85
2204 2245 3.927142 CCGTGCACTAGTAGAAAAAGAGG 59.073 47.826 16.19 0.00 0.00 3.69
2205 2246 3.368236 CGTGCACTAGTAGAAAAAGAGGC 59.632 47.826 16.19 0.00 0.00 4.70
2206 2247 4.570930 GTGCACTAGTAGAAAAAGAGGCT 58.429 43.478 10.32 0.00 0.00 4.58
2207 2248 4.998033 GTGCACTAGTAGAAAAAGAGGCTT 59.002 41.667 10.32 0.00 0.00 4.35
2208 2249 5.120986 GTGCACTAGTAGAAAAAGAGGCTTC 59.879 44.000 10.32 0.00 0.00 3.86
2209 2250 4.632251 GCACTAGTAGAAAAAGAGGCTTCC 59.368 45.833 3.59 0.00 0.00 3.46
2210 2251 5.794894 CACTAGTAGAAAAAGAGGCTTCCA 58.205 41.667 3.59 0.00 0.00 3.53
2211 2252 6.410540 CACTAGTAGAAAAAGAGGCTTCCAT 58.589 40.000 3.59 0.00 0.00 3.41
2212 2253 7.556844 CACTAGTAGAAAAAGAGGCTTCCATA 58.443 38.462 3.59 0.00 0.00 2.74
2213 2254 7.492994 CACTAGTAGAAAAAGAGGCTTCCATAC 59.507 40.741 3.59 0.00 0.00 2.39
2214 2255 5.420409 AGTAGAAAAAGAGGCTTCCATACG 58.580 41.667 0.00 0.00 0.00 3.06
2215 2256 3.010420 AGAAAAAGAGGCTTCCATACGC 58.990 45.455 0.00 0.00 0.00 4.42
2216 2257 1.751437 AAAAGAGGCTTCCATACGCC 58.249 50.000 0.00 0.00 46.65 5.68
2220 2261 3.804329 GGCTTCCATACGCCCCCA 61.804 66.667 0.00 0.00 40.43 4.96
2221 2262 2.515901 GCTTCCATACGCCCCCAT 59.484 61.111 0.00 0.00 0.00 4.00
2222 2263 1.152756 GCTTCCATACGCCCCCATT 60.153 57.895 0.00 0.00 0.00 3.16
2223 2264 0.109723 GCTTCCATACGCCCCCATTA 59.890 55.000 0.00 0.00 0.00 1.90
2224 2265 1.882352 GCTTCCATACGCCCCCATTAG 60.882 57.143 0.00 0.00 0.00 1.73
2225 2266 1.420138 CTTCCATACGCCCCCATTAGT 59.580 52.381 0.00 0.00 0.00 2.24
2226 2267 1.053424 TCCATACGCCCCCATTAGTC 58.947 55.000 0.00 0.00 0.00 2.59
2227 2268 0.036306 CCATACGCCCCCATTAGTCC 59.964 60.000 0.00 0.00 0.00 3.85
2228 2269 0.036306 CATACGCCCCCATTAGTCCC 59.964 60.000 0.00 0.00 0.00 4.46
2229 2270 1.131928 ATACGCCCCCATTAGTCCCC 61.132 60.000 0.00 0.00 0.00 4.81
2230 2271 2.548698 TACGCCCCCATTAGTCCCCA 62.549 60.000 0.00 0.00 0.00 4.96
2231 2272 2.685534 CGCCCCCATTAGTCCCCAA 61.686 63.158 0.00 0.00 0.00 4.12
2232 2273 1.700985 GCCCCCATTAGTCCCCAAA 59.299 57.895 0.00 0.00 0.00 3.28
2233 2274 0.041982 GCCCCCATTAGTCCCCAAAA 59.958 55.000 0.00 0.00 0.00 2.44
2234 2275 1.343985 GCCCCCATTAGTCCCCAAAAT 60.344 52.381 0.00 0.00 0.00 1.82
2235 2276 2.090999 GCCCCCATTAGTCCCCAAAATA 60.091 50.000 0.00 0.00 0.00 1.40
2236 2277 3.631346 GCCCCCATTAGTCCCCAAAATAA 60.631 47.826 0.00 0.00 0.00 1.40
2237 2278 4.826616 CCCCCATTAGTCCCCAAAATAAT 58.173 43.478 0.00 0.00 0.00 1.28
2238 2279 4.838423 CCCCCATTAGTCCCCAAAATAATC 59.162 45.833 0.00 0.00 0.00 1.75
2239 2280 4.522789 CCCCATTAGTCCCCAAAATAATCG 59.477 45.833 0.00 0.00 0.00 3.34
2240 2281 5.381757 CCCATTAGTCCCCAAAATAATCGA 58.618 41.667 0.00 0.00 0.00 3.59
2241 2282 5.830991 CCCATTAGTCCCCAAAATAATCGAA 59.169 40.000 0.00 0.00 0.00 3.71
2242 2283 6.238925 CCCATTAGTCCCCAAAATAATCGAAC 60.239 42.308 0.00 0.00 0.00 3.95
2243 2284 6.546034 CCATTAGTCCCCAAAATAATCGAACT 59.454 38.462 0.00 0.00 0.00 3.01
2244 2285 6.995511 TTAGTCCCCAAAATAATCGAACTG 57.004 37.500 0.00 0.00 0.00 3.16
2245 2286 3.694566 AGTCCCCAAAATAATCGAACTGC 59.305 43.478 0.00 0.00 0.00 4.40
2246 2287 2.680841 TCCCCAAAATAATCGAACTGCG 59.319 45.455 0.00 0.00 42.69 5.18
2255 2296 2.612200 TCGAACTGCGACAAAAGGG 58.388 52.632 0.00 0.00 45.59 3.95
2256 2297 0.882927 TCGAACTGCGACAAAAGGGG 60.883 55.000 0.00 0.00 45.59 4.79
2257 2298 1.164041 CGAACTGCGACAAAAGGGGT 61.164 55.000 0.00 0.00 44.57 4.95
2258 2299 0.591659 GAACTGCGACAAAAGGGGTC 59.408 55.000 0.00 0.00 0.00 4.46
2259 2300 0.182775 AACTGCGACAAAAGGGGTCT 59.817 50.000 0.00 0.00 33.11 3.85
2260 2301 0.182775 ACTGCGACAAAAGGGGTCTT 59.817 50.000 0.00 0.00 33.11 3.01
2261 2302 1.318576 CTGCGACAAAAGGGGTCTTT 58.681 50.000 0.00 0.00 44.40 2.52
2262 2303 2.158726 ACTGCGACAAAAGGGGTCTTTA 60.159 45.455 0.00 0.00 41.92 1.85
2263 2304 2.484264 CTGCGACAAAAGGGGTCTTTAG 59.516 50.000 0.00 0.00 41.92 1.85
2264 2305 2.158726 TGCGACAAAAGGGGTCTTTAGT 60.159 45.455 0.00 0.00 41.92 2.24
2265 2306 2.483106 GCGACAAAAGGGGTCTTTAGTC 59.517 50.000 0.00 0.00 41.92 2.59
2266 2307 2.735134 CGACAAAAGGGGTCTTTAGTCG 59.265 50.000 0.00 0.00 41.92 4.18
2267 2308 3.736720 GACAAAAGGGGTCTTTAGTCGT 58.263 45.455 0.00 0.00 41.92 4.34
2268 2309 3.473625 ACAAAAGGGGTCTTTAGTCGTG 58.526 45.455 0.00 0.00 41.92 4.35
2269 2310 2.812011 CAAAAGGGGTCTTTAGTCGTGG 59.188 50.000 0.00 0.00 41.92 4.94
2270 2311 1.725803 AAGGGGTCTTTAGTCGTGGT 58.274 50.000 0.00 0.00 0.00 4.16
2271 2312 1.725803 AGGGGTCTTTAGTCGTGGTT 58.274 50.000 0.00 0.00 0.00 3.67
2272 2313 1.622312 AGGGGTCTTTAGTCGTGGTTC 59.378 52.381 0.00 0.00 0.00 3.62
2273 2314 1.670967 GGGGTCTTTAGTCGTGGTTCG 60.671 57.143 0.00 0.00 41.41 3.95
2274 2315 1.670967 GGGTCTTTAGTCGTGGTTCGG 60.671 57.143 0.00 0.00 40.32 4.30
2275 2316 1.670967 GGTCTTTAGTCGTGGTTCGGG 60.671 57.143 0.00 0.00 40.32 5.14
2276 2317 1.270550 GTCTTTAGTCGTGGTTCGGGA 59.729 52.381 0.00 0.00 40.32 5.14
2277 2318 1.542915 TCTTTAGTCGTGGTTCGGGAG 59.457 52.381 0.00 0.00 40.32 4.30
2278 2319 0.604578 TTTAGTCGTGGTTCGGGAGG 59.395 55.000 0.00 0.00 40.32 4.30
2279 2320 0.251297 TTAGTCGTGGTTCGGGAGGA 60.251 55.000 0.00 0.00 40.32 3.71
2280 2321 0.679002 TAGTCGTGGTTCGGGAGGAG 60.679 60.000 0.00 0.00 40.32 3.69
2281 2322 1.975407 GTCGTGGTTCGGGAGGAGA 60.975 63.158 0.00 0.00 40.32 3.71
2282 2323 1.975407 TCGTGGTTCGGGAGGAGAC 60.975 63.158 0.00 0.00 40.32 3.36
2283 2324 2.979649 GTGGTTCGGGAGGAGACC 59.020 66.667 0.00 0.00 0.00 3.85
2284 2325 2.284405 TGGTTCGGGAGGAGACCC 60.284 66.667 0.00 0.00 45.92 4.46
2292 2333 3.379445 GAGGAGACCCGCGACCAA 61.379 66.667 8.23 0.00 37.58 3.67
2293 2334 3.644399 GAGGAGACCCGCGACCAAC 62.644 68.421 8.23 0.00 37.58 3.77
2294 2335 3.692406 GGAGACCCGCGACCAACT 61.692 66.667 8.23 0.00 0.00 3.16
2295 2336 2.345760 GGAGACCCGCGACCAACTA 61.346 63.158 8.23 0.00 0.00 2.24
2296 2337 1.673808 GGAGACCCGCGACCAACTAT 61.674 60.000 8.23 0.00 0.00 2.12
2297 2338 0.248949 GAGACCCGCGACCAACTATC 60.249 60.000 8.23 0.00 0.00 2.08
2298 2339 0.683504 AGACCCGCGACCAACTATCT 60.684 55.000 8.23 0.00 0.00 1.98
2299 2340 0.527817 GACCCGCGACCAACTATCTG 60.528 60.000 8.23 0.00 0.00 2.90
2300 2341 1.227263 CCCGCGACCAACTATCTGG 60.227 63.158 8.23 0.00 42.68 3.86
2301 2342 1.227263 CCGCGACCAACTATCTGGG 60.227 63.158 8.23 0.00 41.16 4.45
2302 2343 1.883084 CGCGACCAACTATCTGGGC 60.883 63.158 0.00 0.00 41.65 5.36
2303 2344 1.523938 GCGACCAACTATCTGGGCC 60.524 63.158 0.00 0.00 42.13 5.80
2304 2345 1.146263 CGACCAACTATCTGGGCCC 59.854 63.158 17.59 17.59 42.13 5.80
2305 2346 1.622607 CGACCAACTATCTGGGCCCA 61.623 60.000 26.67 26.67 42.13 5.36
2306 2347 0.181350 GACCAACTATCTGGGCCCAG 59.819 60.000 41.73 41.73 38.75 4.45
2307 2348 1.152881 CCAACTATCTGGGCCCAGC 60.153 63.158 42.34 8.97 43.31 4.85
2308 2349 1.524621 CAACTATCTGGGCCCAGCG 60.525 63.158 42.34 32.54 43.31 5.18
2309 2350 3.406595 AACTATCTGGGCCCAGCGC 62.407 63.158 42.34 8.11 43.31 5.92
2310 2351 4.976925 CTATCTGGGCCCAGCGCG 62.977 72.222 42.34 28.19 44.57 6.86
2344 2385 3.078836 CGGACGGGAGGGGCTTTA 61.079 66.667 0.00 0.00 0.00 1.85
2345 2386 2.908796 GGACGGGAGGGGCTTTAG 59.091 66.667 0.00 0.00 0.00 1.85
2346 2387 1.993948 GGACGGGAGGGGCTTTAGT 60.994 63.158 0.00 0.00 0.00 2.24
2347 2388 1.521141 GACGGGAGGGGCTTTAGTC 59.479 63.158 0.00 0.00 0.00 2.59
2348 2389 1.969200 GACGGGAGGGGCTTTAGTCC 61.969 65.000 0.00 0.00 39.63 3.85
2354 2395 4.313819 GGGCTTTAGTCCCGGTTG 57.686 61.111 0.00 0.00 32.49 3.77
2355 2396 1.378119 GGGCTTTAGTCCCGGTTGG 60.378 63.158 0.00 0.00 32.49 3.77
2356 2397 2.044555 GGCTTTAGTCCCGGTTGGC 61.045 63.158 0.00 0.00 0.00 4.52
2357 2398 2.044555 GCTTTAGTCCCGGTTGGCC 61.045 63.158 0.00 0.00 0.00 5.36
2358 2399 1.683441 CTTTAGTCCCGGTTGGCCT 59.317 57.895 3.32 0.00 0.00 5.19
2359 2400 0.676782 CTTTAGTCCCGGTTGGCCTG 60.677 60.000 3.32 0.00 0.00 4.85
2360 2401 2.132089 TTTAGTCCCGGTTGGCCTGG 62.132 60.000 3.32 0.00 40.14 4.45
2376 2417 4.313819 GGCCAACCGGGACTAAAG 57.686 61.111 6.32 0.00 43.78 1.85
2377 2418 1.378119 GGCCAACCGGGACTAAAGG 60.378 63.158 6.32 0.00 43.78 3.11
2378 2419 1.377612 GCCAACCGGGACTAAAGGT 59.622 57.895 6.32 0.00 40.01 3.50
2379 2420 0.675837 GCCAACCGGGACTAAAGGTC 60.676 60.000 6.32 0.00 43.79 3.85
2388 2429 0.107800 GACTAAAGGTCCCCGAAGGC 60.108 60.000 0.00 0.00 40.24 4.35
2389 2430 3.455058 GACTAAAGGTCCCCGAAGGCC 62.455 61.905 0.00 0.00 40.24 5.19
2398 2439 3.795638 CCGAAGGCCTTTAGTCGC 58.204 61.111 21.54 4.31 46.14 5.19
2399 2440 2.165301 CCGAAGGCCTTTAGTCGCG 61.165 63.158 21.54 16.83 46.14 5.87
2400 2441 2.165301 CGAAGGCCTTTAGTCGCGG 61.165 63.158 21.54 0.00 0.00 6.46
2401 2442 1.079336 GAAGGCCTTTAGTCGCGGT 60.079 57.895 21.54 0.00 0.00 5.68
2402 2443 0.672711 GAAGGCCTTTAGTCGCGGTT 60.673 55.000 21.54 0.00 0.00 4.44
2403 2444 0.953960 AAGGCCTTTAGTCGCGGTTG 60.954 55.000 13.78 0.00 0.00 3.77
2404 2445 2.396157 GGCCTTTAGTCGCGGTTGG 61.396 63.158 6.13 1.60 0.00 3.77
2405 2446 3.035576 GCCTTTAGTCGCGGTTGGC 62.036 63.158 6.13 8.44 38.69 4.52
2406 2447 2.396157 CCTTTAGTCGCGGTTGGCC 61.396 63.158 6.13 0.00 38.94 5.36
2407 2448 1.669760 CTTTAGTCGCGGTTGGCCA 60.670 57.895 0.00 0.00 38.94 5.36
2408 2449 1.635663 CTTTAGTCGCGGTTGGCCAG 61.636 60.000 5.11 0.00 38.94 4.85
2409 2450 3.599285 TTAGTCGCGGTTGGCCAGG 62.599 63.158 5.11 0.07 38.94 4.45
2425 2466 4.313819 GGCCAACCGGGACTAAAG 57.686 61.111 6.32 0.00 43.78 1.85
2426 2467 1.378119 GGCCAACCGGGACTAAAGG 60.378 63.158 6.32 0.00 43.78 3.11
2427 2468 2.044555 GCCAACCGGGACTAAAGGC 61.045 63.158 6.32 4.26 40.01 4.35
2428 2469 1.378119 CCAACCGGGACTAAAGGCC 60.378 63.158 6.32 0.00 40.01 5.19
2429 2470 1.378119 CAACCGGGACTAAAGGCCC 60.378 63.158 11.29 11.29 41.11 5.80
2430 2471 1.848895 AACCGGGACTAAAGGCCCA 60.849 57.895 21.10 0.00 44.94 5.36
2431 2472 1.212250 AACCGGGACTAAAGGCCCAT 61.212 55.000 21.10 5.25 44.94 4.00
2432 2473 1.148498 CCGGGACTAAAGGCCCATC 59.852 63.158 21.10 0.00 44.94 3.51
2433 2474 1.148498 CGGGACTAAAGGCCCATCC 59.852 63.158 21.10 0.00 44.94 3.51
2434 2475 1.537172 GGGACTAAAGGCCCATCCC 59.463 63.158 16.61 10.66 44.07 3.85
2435 2476 0.994050 GGGACTAAAGGCCCATCCCT 60.994 60.000 16.61 0.00 44.94 4.20
2436 2477 1.697945 GGGACTAAAGGCCCATCCCTA 60.698 57.143 16.61 0.00 44.94 3.53
2437 2478 2.349445 GGACTAAAGGCCCATCCCTAT 58.651 52.381 0.00 0.00 33.97 2.57
2438 2479 3.527937 GGACTAAAGGCCCATCCCTATA 58.472 50.000 0.00 0.00 33.97 1.31
2439 2480 4.112331 GGACTAAAGGCCCATCCCTATAT 58.888 47.826 0.00 0.00 33.97 0.86
2440 2481 5.286221 GGACTAAAGGCCCATCCCTATATA 58.714 45.833 0.00 0.00 33.97 0.86
2441 2482 5.911766 GGACTAAAGGCCCATCCCTATATAT 59.088 44.000 0.00 0.00 33.97 0.86
2442 2483 7.080353 GGACTAAAGGCCCATCCCTATATATA 58.920 42.308 0.00 0.00 33.97 0.86
2443 2484 7.235812 GGACTAAAGGCCCATCCCTATATATAG 59.764 44.444 12.18 12.18 33.97 1.31
2459 2500 8.800370 CTATATATAGGACTCAGCTCACTTCA 57.200 38.462 11.40 0.00 0.00 3.02
2460 2501 5.782893 ATATAGGACTCAGCTCACTTCAC 57.217 43.478 0.00 0.00 0.00 3.18
2461 2502 2.008242 AGGACTCAGCTCACTTCACT 57.992 50.000 0.00 0.00 0.00 3.41
2462 2503 2.324541 AGGACTCAGCTCACTTCACTT 58.675 47.619 0.00 0.00 0.00 3.16
2463 2504 2.298729 AGGACTCAGCTCACTTCACTTC 59.701 50.000 0.00 0.00 0.00 3.01
2464 2505 2.036475 GGACTCAGCTCACTTCACTTCA 59.964 50.000 0.00 0.00 0.00 3.02
2465 2506 3.056304 GACTCAGCTCACTTCACTTCAC 58.944 50.000 0.00 0.00 0.00 3.18
2466 2507 2.697751 ACTCAGCTCACTTCACTTCACT 59.302 45.455 0.00 0.00 0.00 3.41
2467 2508 3.243704 ACTCAGCTCACTTCACTTCACTC 60.244 47.826 0.00 0.00 0.00 3.51
2468 2509 2.695147 TCAGCTCACTTCACTTCACTCA 59.305 45.455 0.00 0.00 0.00 3.41
2469 2510 3.058450 CAGCTCACTTCACTTCACTCAG 58.942 50.000 0.00 0.00 0.00 3.35
2470 2511 1.797635 GCTCACTTCACTTCACTCAGC 59.202 52.381 0.00 0.00 0.00 4.26
2471 2512 2.547642 GCTCACTTCACTTCACTCAGCT 60.548 50.000 0.00 0.00 0.00 4.24
2472 2513 3.316283 CTCACTTCACTTCACTCAGCTC 58.684 50.000 0.00 0.00 0.00 4.09
2473 2514 2.695147 TCACTTCACTTCACTCAGCTCA 59.305 45.455 0.00 0.00 0.00 4.26
2474 2515 2.799412 CACTTCACTTCACTCAGCTCAC 59.201 50.000 0.00 0.00 0.00 3.51
2475 2516 2.697751 ACTTCACTTCACTCAGCTCACT 59.302 45.455 0.00 0.00 0.00 3.41
2476 2517 3.133721 ACTTCACTTCACTCAGCTCACTT 59.866 43.478 0.00 0.00 0.00 3.16
2477 2518 3.377346 TCACTTCACTCAGCTCACTTC 57.623 47.619 0.00 0.00 0.00 3.01
2478 2519 2.695147 TCACTTCACTCAGCTCACTTCA 59.305 45.455 0.00 0.00 0.00 3.02
2479 2520 2.799412 CACTTCACTCAGCTCACTTCAC 59.201 50.000 0.00 0.00 0.00 3.18
2480 2521 2.432146 ACTTCACTCAGCTCACTTCACA 59.568 45.455 0.00 0.00 0.00 3.58
2481 2522 3.118629 ACTTCACTCAGCTCACTTCACAA 60.119 43.478 0.00 0.00 0.00 3.33
2482 2523 3.758755 TCACTCAGCTCACTTCACAAT 57.241 42.857 0.00 0.00 0.00 2.71
2483 2524 4.871933 TCACTCAGCTCACTTCACAATA 57.128 40.909 0.00 0.00 0.00 1.90
2484 2525 5.411831 TCACTCAGCTCACTTCACAATAT 57.588 39.130 0.00 0.00 0.00 1.28
2485 2526 5.798132 TCACTCAGCTCACTTCACAATATT 58.202 37.500 0.00 0.00 0.00 1.28
2486 2527 5.871524 TCACTCAGCTCACTTCACAATATTC 59.128 40.000 0.00 0.00 0.00 1.75
2487 2528 5.640783 CACTCAGCTCACTTCACAATATTCA 59.359 40.000 0.00 0.00 0.00 2.57
2488 2529 5.873712 ACTCAGCTCACTTCACAATATTCAG 59.126 40.000 0.00 0.00 0.00 3.02
2489 2530 6.041423 TCAGCTCACTTCACAATATTCAGA 57.959 37.500 0.00 0.00 0.00 3.27
2490 2531 6.466812 TCAGCTCACTTCACAATATTCAGAA 58.533 36.000 0.00 0.00 0.00 3.02
2491 2532 6.592994 TCAGCTCACTTCACAATATTCAGAAG 59.407 38.462 18.28 18.28 42.32 2.85
2492 2533 5.879223 AGCTCACTTCACAATATTCAGAAGG 59.121 40.000 21.53 14.34 41.25 3.46
2493 2534 5.065731 GCTCACTTCACAATATTCAGAAGGG 59.934 44.000 21.53 19.38 41.64 3.95
2494 2535 5.500234 TCACTTCACAATATTCAGAAGGGG 58.500 41.667 20.45 15.33 40.87 4.79
2495 2536 4.641989 CACTTCACAATATTCAGAAGGGGG 59.358 45.833 21.53 12.16 41.25 5.40
2496 2537 4.292306 ACTTCACAATATTCAGAAGGGGGT 59.708 41.667 21.53 7.04 41.25 4.95
2497 2538 4.235079 TCACAATATTCAGAAGGGGGTG 57.765 45.455 0.00 0.00 0.00 4.61
2498 2539 3.053693 TCACAATATTCAGAAGGGGGTGG 60.054 47.826 7.54 0.00 0.00 4.61
2499 2540 2.926329 ACAATATTCAGAAGGGGGTGGT 59.074 45.455 0.00 0.00 0.00 4.16
2500 2541 3.290710 CAATATTCAGAAGGGGGTGGTG 58.709 50.000 0.00 0.00 0.00 4.17
2501 2542 1.295020 TATTCAGAAGGGGGTGGTGG 58.705 55.000 0.00 0.00 0.00 4.61
2502 2543 1.509548 ATTCAGAAGGGGGTGGTGGG 61.510 60.000 0.00 0.00 0.00 4.61
2503 2544 2.858974 CAGAAGGGGGTGGTGGGT 60.859 66.667 0.00 0.00 0.00 4.51
2504 2545 2.037677 AGAAGGGGGTGGTGGGTT 60.038 61.111 0.00 0.00 0.00 4.11
2505 2546 1.703597 AGAAGGGGGTGGTGGGTTT 60.704 57.895 0.00 0.00 0.00 3.27
2506 2547 1.533033 GAAGGGGGTGGTGGGTTTG 60.533 63.158 0.00 0.00 0.00 2.93
2507 2548 3.767044 AAGGGGGTGGTGGGTTTGC 62.767 63.158 0.00 0.00 0.00 3.68
2508 2549 4.233558 GGGGGTGGTGGGTTTGCT 62.234 66.667 0.00 0.00 0.00 3.91
2509 2550 2.123033 GGGGTGGTGGGTTTGCTT 60.123 61.111 0.00 0.00 0.00 3.91
2510 2551 1.764454 GGGGTGGTGGGTTTGCTTT 60.764 57.895 0.00 0.00 0.00 3.51
2511 2552 1.341913 GGGGTGGTGGGTTTGCTTTT 61.342 55.000 0.00 0.00 0.00 2.27
2512 2553 0.179059 GGGTGGTGGGTTTGCTTTTG 60.179 55.000 0.00 0.00 0.00 2.44
2513 2554 0.179059 GGTGGTGGGTTTGCTTTTGG 60.179 55.000 0.00 0.00 0.00 3.28
2514 2555 0.539518 GTGGTGGGTTTGCTTTTGGT 59.460 50.000 0.00 0.00 0.00 3.67
2515 2556 1.065782 GTGGTGGGTTTGCTTTTGGTT 60.066 47.619 0.00 0.00 0.00 3.67
2516 2557 1.208293 TGGTGGGTTTGCTTTTGGTTC 59.792 47.619 0.00 0.00 0.00 3.62
2517 2558 1.474320 GGTGGGTTTGCTTTTGGTTCC 60.474 52.381 0.00 0.00 0.00 3.62
2518 2559 1.484653 GTGGGTTTGCTTTTGGTTCCT 59.515 47.619 0.00 0.00 0.00 3.36
2519 2560 1.760029 TGGGTTTGCTTTTGGTTCCTC 59.240 47.619 0.00 0.00 0.00 3.71
2520 2561 1.070134 GGGTTTGCTTTTGGTTCCTCC 59.930 52.381 0.00 0.00 0.00 4.30
2521 2562 2.039418 GGTTTGCTTTTGGTTCCTCCT 58.961 47.619 0.00 0.00 37.07 3.69
2522 2563 3.227614 GGTTTGCTTTTGGTTCCTCCTA 58.772 45.455 0.00 0.00 37.07 2.94
2523 2564 3.832490 GGTTTGCTTTTGGTTCCTCCTAT 59.168 43.478 0.00 0.00 37.07 2.57
2524 2565 4.321974 GGTTTGCTTTTGGTTCCTCCTATG 60.322 45.833 0.00 0.00 37.07 2.23
2525 2566 2.446435 TGCTTTTGGTTCCTCCTATGC 58.554 47.619 0.00 0.00 37.07 3.14
2526 2567 2.224992 TGCTTTTGGTTCCTCCTATGCA 60.225 45.455 0.00 0.00 37.07 3.96
2527 2568 2.164422 GCTTTTGGTTCCTCCTATGCAC 59.836 50.000 0.00 0.00 37.07 4.57
2528 2569 3.420893 CTTTTGGTTCCTCCTATGCACA 58.579 45.455 0.00 0.00 37.07 4.57
2529 2570 2.489938 TTGGTTCCTCCTATGCACAC 57.510 50.000 0.00 0.00 37.07 3.82
2530 2571 1.357137 TGGTTCCTCCTATGCACACA 58.643 50.000 0.00 0.00 37.07 3.72
2531 2572 1.702401 TGGTTCCTCCTATGCACACAA 59.298 47.619 0.00 0.00 37.07 3.33
2532 2573 2.290260 TGGTTCCTCCTATGCACACAAG 60.290 50.000 0.00 0.00 37.07 3.16
2533 2574 2.359900 GTTCCTCCTATGCACACAAGG 58.640 52.381 0.00 0.00 0.00 3.61
2534 2575 1.656587 TCCTCCTATGCACACAAGGT 58.343 50.000 0.00 0.00 0.00 3.50
2537 2578 2.553028 CCTCCTATGCACACAAGGTGTT 60.553 50.000 0.00 0.00 45.08 3.32
2538 2579 2.744202 CTCCTATGCACACAAGGTGTTC 59.256 50.000 0.00 0.00 45.08 3.18
2539 2580 1.464608 CCTATGCACACAAGGTGTTCG 59.535 52.381 0.00 0.00 45.08 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 0.981183 ACGGGCACATAAGGAGTCAA 59.019 50.000 0.00 0.00 0.00 3.18
97 98 3.054361 GGAAGTATTTGGCCTTGAGGAGA 60.054 47.826 3.32 0.00 37.39 3.71
149 150 4.499183 CAAGTATATGAGATTCCCGCCTC 58.501 47.826 0.00 0.00 0.00 4.70
284 285 3.060615 CGGGGTTCGAGGTCGTCT 61.061 66.667 0.00 0.00 42.43 4.18
690 692 4.216257 GTCTTTGGCAGCACAAATAGAGAA 59.784 41.667 8.85 0.00 39.39 2.87
696 698 1.342174 CCAGTCTTTGGCAGCACAAAT 59.658 47.619 8.85 0.00 40.87 2.32
708 710 1.978580 ACCCGTCTTCATCCAGTCTTT 59.021 47.619 0.00 0.00 0.00 2.52
756 762 6.294473 TGCATTTCTCTTCAGAGTTTCTTCT 58.706 36.000 3.73 0.00 42.60 2.85
811 817 0.899720 CTTCCCTGGCATTTGCACAT 59.100 50.000 4.74 0.00 44.36 3.21
1078 1088 1.494721 ACTATGGAACGCCCCATCAAT 59.505 47.619 11.85 0.00 43.07 2.57
1122 1132 4.093703 CCAGTGTTATCGCGGATTACAAAA 59.906 41.667 6.13 0.00 34.22 2.44
1238 1258 1.140312 GGAGATCCCCCATACTGCAA 58.860 55.000 0.00 0.00 0.00 4.08
1515 1548 2.121538 AGGCACAGCTCGATCGCTA 61.122 57.895 11.09 0.00 38.41 4.26
1623 1656 5.609423 GAGACTCTGCAGATGAACCATTAT 58.391 41.667 18.63 0.00 0.00 1.28
1624 1657 4.440663 CGAGACTCTGCAGATGAACCATTA 60.441 45.833 18.63 0.00 0.00 1.90
1625 1658 3.678252 CGAGACTCTGCAGATGAACCATT 60.678 47.826 18.63 0.00 0.00 3.16
1626 1659 2.159128 CGAGACTCTGCAGATGAACCAT 60.159 50.000 18.63 0.00 0.00 3.55
1627 1660 1.203287 CGAGACTCTGCAGATGAACCA 59.797 52.381 18.63 0.00 0.00 3.67
1628 1661 1.474478 TCGAGACTCTGCAGATGAACC 59.526 52.381 18.63 5.13 0.00 3.62
1629 1662 2.929531 TCGAGACTCTGCAGATGAAC 57.070 50.000 18.63 8.96 0.00 3.18
1630 1663 2.480932 GCATCGAGACTCTGCAGATGAA 60.481 50.000 18.63 0.33 40.62 2.57
1631 1664 1.066757 GCATCGAGACTCTGCAGATGA 59.933 52.381 18.63 10.64 40.62 2.92
1632 1665 1.489574 GCATCGAGACTCTGCAGATG 58.510 55.000 18.63 11.82 40.97 2.90
1633 1666 0.388659 GGCATCGAGACTCTGCAGAT 59.611 55.000 18.63 7.64 37.64 2.90
1634 1667 1.812525 GGCATCGAGACTCTGCAGA 59.187 57.895 17.19 17.19 37.64 4.26
1635 1668 1.588403 CGGCATCGAGACTCTGCAG 60.588 63.158 16.09 7.63 37.64 4.41
1636 1669 2.491621 CGGCATCGAGACTCTGCA 59.508 61.111 16.09 0.00 37.64 4.41
1637 1670 2.279120 CCGGCATCGAGACTCTGC 60.279 66.667 7.92 7.92 39.00 4.26
1638 1671 1.667154 TTCCCGGCATCGAGACTCTG 61.667 60.000 0.00 0.00 39.00 3.35
1639 1672 0.757188 ATTCCCGGCATCGAGACTCT 60.757 55.000 0.00 0.00 39.00 3.24
1640 1673 0.959553 TATTCCCGGCATCGAGACTC 59.040 55.000 0.00 0.00 39.00 3.36
1641 1674 1.633774 ATATTCCCGGCATCGAGACT 58.366 50.000 0.00 0.00 39.00 3.24
1662 1699 5.486775 TGGGCTCGTATATAGTACTCCTACT 59.513 44.000 0.00 0.00 37.04 2.57
1666 1703 4.142425 GCTTGGGCTCGTATATAGTACTCC 60.142 50.000 0.00 0.00 35.22 3.85
1667 1704 4.437121 CGCTTGGGCTCGTATATAGTACTC 60.437 50.000 0.00 0.00 36.09 2.59
1685 1726 3.495193 CTCCAAATGTGATTGTCGCTTG 58.505 45.455 0.00 0.00 0.00 4.01
1704 1745 5.050837 CCATTGTTTTGTTTTGTGCTAGCTC 60.051 40.000 17.23 13.38 0.00 4.09
1827 1868 2.829914 CATGACGGGCCACCCATG 60.830 66.667 4.39 10.49 45.83 3.66
1895 1936 2.226896 CCTCATCACTTCGCGAGCG 61.227 63.158 9.59 11.64 41.35 5.03
1898 1939 1.511305 GGTCCTCATCACTTCGCGA 59.489 57.895 3.71 3.71 0.00 5.87
1935 1976 3.005539 AGAGCTCATGGGCCGTGT 61.006 61.111 24.48 6.33 0.00 4.49
1990 2031 0.680061 GTCGCCATAGGGGTCTAAGG 59.320 60.000 0.00 0.00 39.65 2.69
1994 2035 2.064581 GTGGTCGCCATAGGGGTCT 61.065 63.158 0.00 0.00 39.65 3.85
1996 2037 2.040606 AGTGGTCGCCATAGGGGT 59.959 61.111 0.00 0.00 39.65 4.95
2019 2060 2.740055 GGCTATCCGGCGCATCTG 60.740 66.667 10.83 0.00 0.00 2.90
2039 2080 4.803426 GCGGTGAGGAGCTCGGTG 62.803 72.222 7.83 0.00 32.35 4.94
2081 2122 1.043673 CGACTTCCTCCTCCCGGATT 61.044 60.000 0.73 0.00 39.01 3.01
2091 2132 2.892425 CATGGCGGCGACTTCCTC 60.892 66.667 16.45 0.00 0.00 3.71
2127 2168 0.757188 ATGTCGATCTCTTCCCCGCT 60.757 55.000 0.00 0.00 0.00 5.52
2162 2203 4.758251 CTGTCGGCCACCATCGCA 62.758 66.667 2.24 0.00 0.00 5.10
2165 2206 3.127533 GTGCTGTCGGCCACCATC 61.128 66.667 2.24 0.00 40.92 3.51
2174 2215 2.049526 TAGTGCACGGTGCTGTCG 60.050 61.111 30.81 0.00 45.31 4.35
2183 2224 3.368236 GCCTCTTTTTCTACTAGTGCACG 59.632 47.826 12.01 0.00 0.00 5.34
2188 2229 6.628644 ATGGAAGCCTCTTTTTCTACTAGT 57.371 37.500 0.00 0.00 0.00 2.57
2189 2230 6.697892 CGTATGGAAGCCTCTTTTTCTACTAG 59.302 42.308 0.00 0.00 0.00 2.57
2190 2231 6.570692 CGTATGGAAGCCTCTTTTTCTACTA 58.429 40.000 0.00 0.00 0.00 1.82
2191 2232 5.420409 CGTATGGAAGCCTCTTTTTCTACT 58.580 41.667 0.00 0.00 0.00 2.57
2192 2233 4.034163 GCGTATGGAAGCCTCTTTTTCTAC 59.966 45.833 0.00 0.00 0.00 2.59
2193 2234 4.189231 GCGTATGGAAGCCTCTTTTTCTA 58.811 43.478 0.00 0.00 0.00 2.10
2194 2235 3.010420 GCGTATGGAAGCCTCTTTTTCT 58.990 45.455 0.00 0.00 0.00 2.52
2195 2236 3.406728 GCGTATGGAAGCCTCTTTTTC 57.593 47.619 0.00 0.00 0.00 2.29
2204 2245 0.109723 TAATGGGGGCGTATGGAAGC 59.890 55.000 0.00 0.00 0.00 3.86
2205 2246 1.420138 ACTAATGGGGGCGTATGGAAG 59.580 52.381 0.00 0.00 0.00 3.46
2206 2247 1.418637 GACTAATGGGGGCGTATGGAA 59.581 52.381 0.00 0.00 0.00 3.53
2207 2248 1.053424 GACTAATGGGGGCGTATGGA 58.947 55.000 0.00 0.00 0.00 3.41
2208 2249 0.036306 GGACTAATGGGGGCGTATGG 59.964 60.000 0.00 0.00 0.00 2.74
2209 2250 0.036306 GGGACTAATGGGGGCGTATG 59.964 60.000 0.00 0.00 0.00 2.39
2210 2251 1.131928 GGGGACTAATGGGGGCGTAT 61.132 60.000 0.00 0.00 0.00 3.06
2211 2252 1.767268 GGGGACTAATGGGGGCGTA 60.767 63.158 0.00 0.00 0.00 4.42
2212 2253 3.094498 GGGGACTAATGGGGGCGT 61.094 66.667 0.00 0.00 0.00 5.68
2213 2254 2.218115 TTTGGGGACTAATGGGGGCG 62.218 60.000 0.00 0.00 0.00 6.13
2214 2255 0.041982 TTTTGGGGACTAATGGGGGC 59.958 55.000 0.00 0.00 0.00 5.80
2215 2256 2.866923 ATTTTGGGGACTAATGGGGG 57.133 50.000 0.00 0.00 0.00 5.40
2216 2257 4.522789 CGATTATTTTGGGGACTAATGGGG 59.477 45.833 0.00 0.00 0.00 4.96
2217 2258 5.381757 TCGATTATTTTGGGGACTAATGGG 58.618 41.667 0.00 0.00 0.00 4.00
2218 2259 6.546034 AGTTCGATTATTTTGGGGACTAATGG 59.454 38.462 0.00 0.00 0.00 3.16
2219 2260 7.417612 CAGTTCGATTATTTTGGGGACTAATG 58.582 38.462 0.00 0.00 0.00 1.90
2220 2261 6.039382 GCAGTTCGATTATTTTGGGGACTAAT 59.961 38.462 0.00 0.00 0.00 1.73
2221 2262 5.355910 GCAGTTCGATTATTTTGGGGACTAA 59.644 40.000 0.00 0.00 0.00 2.24
2222 2263 4.879545 GCAGTTCGATTATTTTGGGGACTA 59.120 41.667 0.00 0.00 0.00 2.59
2223 2264 3.694566 GCAGTTCGATTATTTTGGGGACT 59.305 43.478 0.00 0.00 0.00 3.85
2224 2265 3.486875 CGCAGTTCGATTATTTTGGGGAC 60.487 47.826 0.00 0.00 41.67 4.46
2225 2266 2.680841 CGCAGTTCGATTATTTTGGGGA 59.319 45.455 0.00 0.00 41.67 4.81
2226 2267 2.680841 TCGCAGTTCGATTATTTTGGGG 59.319 45.455 0.00 0.00 43.16 4.96
2237 2278 0.882927 CCCCTTTTGTCGCAGTTCGA 60.883 55.000 0.00 0.00 46.29 3.71
2238 2279 1.164041 ACCCCTTTTGTCGCAGTTCG 61.164 55.000 0.00 0.00 40.15 3.95
2239 2280 0.591659 GACCCCTTTTGTCGCAGTTC 59.408 55.000 0.00 0.00 0.00 3.01
2240 2281 0.182775 AGACCCCTTTTGTCGCAGTT 59.817 50.000 0.00 0.00 37.80 3.16
2241 2282 0.182775 AAGACCCCTTTTGTCGCAGT 59.817 50.000 0.00 0.00 37.80 4.40
2242 2283 1.318576 AAAGACCCCTTTTGTCGCAG 58.681 50.000 0.00 0.00 39.45 5.18
2243 2284 2.158726 ACTAAAGACCCCTTTTGTCGCA 60.159 45.455 0.00 0.00 41.96 5.10
2244 2285 2.483106 GACTAAAGACCCCTTTTGTCGC 59.517 50.000 13.48 0.00 46.60 5.19
2247 2288 3.473625 CACGACTAAAGACCCCTTTTGT 58.526 45.455 5.07 5.07 45.96 2.83
2248 2289 2.812011 CCACGACTAAAGACCCCTTTTG 59.188 50.000 0.00 0.00 42.26 2.44
2249 2290 2.440627 ACCACGACTAAAGACCCCTTTT 59.559 45.455 0.00 0.00 42.26 2.27
2250 2291 2.052468 ACCACGACTAAAGACCCCTTT 58.948 47.619 0.00 0.00 44.26 3.11
2251 2292 1.725803 ACCACGACTAAAGACCCCTT 58.274 50.000 0.00 0.00 0.00 3.95
2252 2293 1.622312 GAACCACGACTAAAGACCCCT 59.378 52.381 0.00 0.00 0.00 4.79
2253 2294 1.670967 CGAACCACGACTAAAGACCCC 60.671 57.143 0.00 0.00 45.77 4.95
2254 2295 1.670967 CCGAACCACGACTAAAGACCC 60.671 57.143 0.00 0.00 45.77 4.46
2255 2296 1.670967 CCCGAACCACGACTAAAGACC 60.671 57.143 0.00 0.00 45.77 3.85
2256 2297 1.270550 TCCCGAACCACGACTAAAGAC 59.729 52.381 0.00 0.00 45.77 3.01
2257 2298 1.542915 CTCCCGAACCACGACTAAAGA 59.457 52.381 0.00 0.00 45.77 2.52
2258 2299 1.403780 CCTCCCGAACCACGACTAAAG 60.404 57.143 0.00 0.00 45.77 1.85
2259 2300 0.604578 CCTCCCGAACCACGACTAAA 59.395 55.000 0.00 0.00 45.77 1.85
2260 2301 0.251297 TCCTCCCGAACCACGACTAA 60.251 55.000 0.00 0.00 45.77 2.24
2261 2302 0.679002 CTCCTCCCGAACCACGACTA 60.679 60.000 0.00 0.00 45.77 2.59
2262 2303 1.977544 CTCCTCCCGAACCACGACT 60.978 63.158 0.00 0.00 45.77 4.18
2263 2304 1.975407 TCTCCTCCCGAACCACGAC 60.975 63.158 0.00 0.00 45.77 4.34
2264 2305 1.975407 GTCTCCTCCCGAACCACGA 60.975 63.158 0.00 0.00 45.77 4.35
2265 2306 2.572284 GTCTCCTCCCGAACCACG 59.428 66.667 0.00 0.00 42.18 4.94
2266 2307 2.657066 GGGTCTCCTCCCGAACCAC 61.657 68.421 0.00 0.00 38.17 4.16
2267 2308 2.284405 GGGTCTCCTCCCGAACCA 60.284 66.667 0.00 0.00 38.17 3.67
2275 2316 3.379445 TTGGTCGCGGGTCTCCTC 61.379 66.667 6.13 0.00 0.00 3.71
2276 2317 2.776370 TAGTTGGTCGCGGGTCTCCT 62.776 60.000 6.13 0.00 0.00 3.69
2277 2318 1.673808 ATAGTTGGTCGCGGGTCTCC 61.674 60.000 6.13 2.24 0.00 3.71
2278 2319 0.248949 GATAGTTGGTCGCGGGTCTC 60.249 60.000 6.13 0.00 0.00 3.36
2279 2320 0.683504 AGATAGTTGGTCGCGGGTCT 60.684 55.000 6.13 0.82 0.00 3.85
2280 2321 0.527817 CAGATAGTTGGTCGCGGGTC 60.528 60.000 6.13 0.00 0.00 4.46
2281 2322 1.515954 CAGATAGTTGGTCGCGGGT 59.484 57.895 6.13 0.00 0.00 5.28
2282 2323 1.227263 CCAGATAGTTGGTCGCGGG 60.227 63.158 6.13 0.00 33.38 6.13
2283 2324 1.227263 CCCAGATAGTTGGTCGCGG 60.227 63.158 6.13 0.00 36.45 6.46
2284 2325 1.883084 GCCCAGATAGTTGGTCGCG 60.883 63.158 0.00 0.00 36.45 5.87
2285 2326 1.523938 GGCCCAGATAGTTGGTCGC 60.524 63.158 0.00 0.00 36.45 5.19
2286 2327 1.146263 GGGCCCAGATAGTTGGTCG 59.854 63.158 19.95 0.00 36.45 4.79
2287 2328 0.181350 CTGGGCCCAGATAGTTGGTC 59.819 60.000 44.19 2.37 46.30 4.02
2288 2329 2.311287 CTGGGCCCAGATAGTTGGT 58.689 57.895 44.19 0.00 46.30 3.67
2327 2368 3.078836 TAAAGCCCCTCCCGTCCG 61.079 66.667 0.00 0.00 0.00 4.79
2328 2369 1.969200 GACTAAAGCCCCTCCCGTCC 61.969 65.000 0.00 0.00 0.00 4.79
2329 2370 1.521141 GACTAAAGCCCCTCCCGTC 59.479 63.158 0.00 0.00 0.00 4.79
2330 2371 1.993948 GGACTAAAGCCCCTCCCGT 60.994 63.158 0.00 0.00 0.00 5.28
2331 2372 2.743179 GGGACTAAAGCCCCTCCCG 61.743 68.421 0.00 0.00 39.81 5.14
2332 2373 2.743179 CGGGACTAAAGCCCCTCCC 61.743 68.421 0.00 0.00 42.92 4.30
2333 2374 2.743179 CCGGGACTAAAGCCCCTCC 61.743 68.421 0.00 0.00 42.92 4.30
2334 2375 1.559965 AACCGGGACTAAAGCCCCTC 61.560 60.000 6.32 0.00 42.92 4.30
2335 2376 1.540617 AACCGGGACTAAAGCCCCT 60.541 57.895 6.32 0.00 42.92 4.79
2336 2377 1.378119 CAACCGGGACTAAAGCCCC 60.378 63.158 6.32 0.00 42.92 5.80
2337 2378 1.378119 CCAACCGGGACTAAAGCCC 60.378 63.158 6.32 0.00 42.41 5.19
2338 2379 2.044555 GCCAACCGGGACTAAAGCC 61.045 63.158 6.32 0.00 40.01 4.35
2339 2380 2.044555 GGCCAACCGGGACTAAAGC 61.045 63.158 6.32 0.00 43.78 3.51
2340 2381 4.313819 GGCCAACCGGGACTAAAG 57.686 61.111 6.32 0.00 43.78 1.85
2356 2397 2.132089 TTTAGTCCCGGTTGGCCAGG 62.132 60.000 5.11 3.46 33.49 4.45
2357 2398 0.676782 CTTTAGTCCCGGTTGGCCAG 60.677 60.000 5.11 0.00 34.09 4.85
2358 2399 1.377229 CTTTAGTCCCGGTTGGCCA 59.623 57.895 0.00 0.00 34.09 5.36
2359 2400 1.378119 CCTTTAGTCCCGGTTGGCC 60.378 63.158 0.00 0.00 0.00 5.36
2360 2401 0.675837 GACCTTTAGTCCCGGTTGGC 60.676 60.000 0.00 0.00 39.84 4.52
2361 2402 3.545724 GACCTTTAGTCCCGGTTGG 57.454 57.895 0.00 0.00 39.84 3.77
2376 2417 1.223763 CTAAAGGCCTTCGGGGACC 59.776 63.158 20.79 0.00 46.87 4.46
2377 2418 0.107800 GACTAAAGGCCTTCGGGGAC 60.108 60.000 20.79 5.09 45.71 4.46
2378 2419 1.610554 CGACTAAAGGCCTTCGGGGA 61.611 60.000 20.79 1.09 37.23 4.81
2379 2420 1.153429 CGACTAAAGGCCTTCGGGG 60.153 63.158 20.79 11.51 35.16 5.73
2380 2421 1.814169 GCGACTAAAGGCCTTCGGG 60.814 63.158 20.79 14.03 38.37 5.14
2381 2422 2.165301 CGCGACTAAAGGCCTTCGG 61.165 63.158 20.79 16.60 32.04 4.30
2382 2423 2.165301 CCGCGACTAAAGGCCTTCG 61.165 63.158 20.79 19.32 34.56 3.79
2383 2424 0.672711 AACCGCGACTAAAGGCCTTC 60.673 55.000 20.79 5.09 0.00 3.46
2384 2425 0.953960 CAACCGCGACTAAAGGCCTT 60.954 55.000 13.78 13.78 0.00 4.35
2385 2426 1.375523 CAACCGCGACTAAAGGCCT 60.376 57.895 8.23 0.00 0.00 5.19
2386 2427 2.396157 CCAACCGCGACTAAAGGCC 61.396 63.158 8.23 0.00 0.00 5.19
2387 2428 3.035576 GCCAACCGCGACTAAAGGC 62.036 63.158 8.23 8.51 0.00 4.35
2388 2429 2.396157 GGCCAACCGCGACTAAAGG 61.396 63.158 8.23 1.23 38.94 3.11
2389 2430 1.635663 CTGGCCAACCGCGACTAAAG 61.636 60.000 8.23 0.00 39.70 1.85
2390 2431 1.669760 CTGGCCAACCGCGACTAAA 60.670 57.895 8.23 0.00 39.70 1.85
2391 2432 2.047655 CTGGCCAACCGCGACTAA 60.048 61.111 8.23 0.00 39.70 2.24
2392 2433 4.077184 CCTGGCCAACCGCGACTA 62.077 66.667 8.23 0.00 39.70 2.59
2405 2446 2.132089 TTTAGTCCCGGTTGGCCTGG 62.132 60.000 3.32 0.00 40.14 4.45
2406 2447 0.676782 CTTTAGTCCCGGTTGGCCTG 60.677 60.000 3.32 0.00 0.00 4.85
2407 2448 1.683441 CTTTAGTCCCGGTTGGCCT 59.317 57.895 3.32 0.00 0.00 5.19
2408 2449 1.378119 CCTTTAGTCCCGGTTGGCC 60.378 63.158 0.00 0.00 0.00 5.36
2409 2450 2.044555 GCCTTTAGTCCCGGTTGGC 61.045 63.158 0.00 0.00 0.00 4.52
2410 2451 1.378119 GGCCTTTAGTCCCGGTTGG 60.378 63.158 0.00 0.00 0.00 3.77
2411 2452 1.378119 GGGCCTTTAGTCCCGGTTG 60.378 63.158 0.84 0.00 32.00 3.77
2412 2453 1.212250 ATGGGCCTTTAGTCCCGGTT 61.212 55.000 4.53 0.00 45.60 4.44
2413 2454 1.618447 ATGGGCCTTTAGTCCCGGT 60.618 57.895 4.53 0.00 45.60 5.28
2414 2455 1.148498 GATGGGCCTTTAGTCCCGG 59.852 63.158 4.53 0.00 45.60 5.73
2415 2456 1.148498 GGATGGGCCTTTAGTCCCG 59.852 63.158 4.53 0.00 45.60 5.14
2416 2457 1.537172 GGGATGGGCCTTTAGTCCC 59.463 63.158 4.53 10.17 41.55 4.46
2417 2458 1.815757 TAGGGATGGGCCTTTAGTCC 58.184 55.000 4.53 4.58 36.66 3.85
2418 2459 7.235812 CCTATATATAGGGATGGGCCTTTAGTC 59.764 44.444 25.73 0.00 44.97 2.59
2419 2460 7.082972 CCTATATATAGGGATGGGCCTTTAGT 58.917 42.308 25.73 0.00 44.97 2.24
2420 2461 7.560796 CCTATATATAGGGATGGGCCTTTAG 57.439 44.000 25.73 0.85 44.97 1.85
2434 2475 8.673711 GTGAAGTGAGCTGAGTCCTATATATAG 58.326 40.741 12.18 12.18 0.00 1.31
2435 2476 8.387039 AGTGAAGTGAGCTGAGTCCTATATATA 58.613 37.037 0.00 0.00 0.00 0.86
2436 2477 7.237982 AGTGAAGTGAGCTGAGTCCTATATAT 58.762 38.462 0.00 0.00 0.00 0.86
2437 2478 6.606069 AGTGAAGTGAGCTGAGTCCTATATA 58.394 40.000 0.00 0.00 0.00 0.86
2438 2479 5.454062 AGTGAAGTGAGCTGAGTCCTATAT 58.546 41.667 0.00 0.00 0.00 0.86
2439 2480 4.861196 AGTGAAGTGAGCTGAGTCCTATA 58.139 43.478 0.00 0.00 0.00 1.31
2440 2481 3.707316 AGTGAAGTGAGCTGAGTCCTAT 58.293 45.455 0.00 0.00 0.00 2.57
2441 2482 3.162147 AGTGAAGTGAGCTGAGTCCTA 57.838 47.619 0.00 0.00 0.00 2.94
2442 2483 2.008242 AGTGAAGTGAGCTGAGTCCT 57.992 50.000 0.00 0.00 0.00 3.85
2443 2484 2.036475 TGAAGTGAAGTGAGCTGAGTCC 59.964 50.000 0.00 0.00 0.00 3.85
2444 2485 3.056304 GTGAAGTGAAGTGAGCTGAGTC 58.944 50.000 0.00 0.00 0.00 3.36
2445 2486 2.697751 AGTGAAGTGAAGTGAGCTGAGT 59.302 45.455 0.00 0.00 0.00 3.41
2446 2487 3.243670 TGAGTGAAGTGAAGTGAGCTGAG 60.244 47.826 0.00 0.00 0.00 3.35
2447 2488 2.695147 TGAGTGAAGTGAAGTGAGCTGA 59.305 45.455 0.00 0.00 0.00 4.26
2448 2489 3.058450 CTGAGTGAAGTGAAGTGAGCTG 58.942 50.000 0.00 0.00 0.00 4.24
2449 2490 2.547642 GCTGAGTGAAGTGAAGTGAGCT 60.548 50.000 0.00 0.00 0.00 4.09
2450 2491 1.797635 GCTGAGTGAAGTGAAGTGAGC 59.202 52.381 0.00 0.00 0.00 4.26
2451 2492 3.243670 TGAGCTGAGTGAAGTGAAGTGAG 60.244 47.826 0.00 0.00 0.00 3.51
2452 2493 2.695147 TGAGCTGAGTGAAGTGAAGTGA 59.305 45.455 0.00 0.00 0.00 3.41
2453 2494 2.799412 GTGAGCTGAGTGAAGTGAAGTG 59.201 50.000 0.00 0.00 0.00 3.16
2454 2495 2.697751 AGTGAGCTGAGTGAAGTGAAGT 59.302 45.455 0.00 0.00 0.00 3.01
2455 2496 3.383620 AGTGAGCTGAGTGAAGTGAAG 57.616 47.619 0.00 0.00 0.00 3.02
2456 2497 3.132824 TGAAGTGAGCTGAGTGAAGTGAA 59.867 43.478 0.00 0.00 0.00 3.18
2457 2498 2.695147 TGAAGTGAGCTGAGTGAAGTGA 59.305 45.455 0.00 0.00 0.00 3.41
2458 2499 2.799412 GTGAAGTGAGCTGAGTGAAGTG 59.201 50.000 0.00 0.00 0.00 3.16
2459 2500 2.432146 TGTGAAGTGAGCTGAGTGAAGT 59.568 45.455 0.00 0.00 0.00 3.01
2460 2501 3.103447 TGTGAAGTGAGCTGAGTGAAG 57.897 47.619 0.00 0.00 0.00 3.02
2461 2502 3.541996 TTGTGAAGTGAGCTGAGTGAA 57.458 42.857 0.00 0.00 0.00 3.18
2462 2503 3.758755 ATTGTGAAGTGAGCTGAGTGA 57.241 42.857 0.00 0.00 0.00 3.41
2463 2504 5.640783 TGAATATTGTGAAGTGAGCTGAGTG 59.359 40.000 0.00 0.00 0.00 3.51
2464 2505 5.798132 TGAATATTGTGAAGTGAGCTGAGT 58.202 37.500 0.00 0.00 0.00 3.41
2465 2506 6.104665 TCTGAATATTGTGAAGTGAGCTGAG 58.895 40.000 0.00 0.00 0.00 3.35
2466 2507 6.041423 TCTGAATATTGTGAAGTGAGCTGA 57.959 37.500 0.00 0.00 0.00 4.26
2467 2508 6.183360 CCTTCTGAATATTGTGAAGTGAGCTG 60.183 42.308 18.17 5.82 35.47 4.24
2468 2509 5.879223 CCTTCTGAATATTGTGAAGTGAGCT 59.121 40.000 18.17 0.00 35.47 4.09
2469 2510 5.065731 CCCTTCTGAATATTGTGAAGTGAGC 59.934 44.000 18.17 0.00 35.47 4.26
2470 2511 5.587844 CCCCTTCTGAATATTGTGAAGTGAG 59.412 44.000 18.17 10.87 35.47 3.51
2471 2512 5.500234 CCCCTTCTGAATATTGTGAAGTGA 58.500 41.667 18.17 0.00 35.47 3.41
2472 2513 4.641989 CCCCCTTCTGAATATTGTGAAGTG 59.358 45.833 18.17 11.45 35.47 3.16
2473 2514 4.292306 ACCCCCTTCTGAATATTGTGAAGT 59.708 41.667 18.17 5.63 35.47 3.01
2474 2515 4.641989 CACCCCCTTCTGAATATTGTGAAG 59.358 45.833 15.06 15.06 36.59 3.02
2475 2516 4.569653 CCACCCCCTTCTGAATATTGTGAA 60.570 45.833 0.00 0.00 0.00 3.18
2476 2517 3.053693 CCACCCCCTTCTGAATATTGTGA 60.054 47.826 0.00 0.00 0.00 3.58
2477 2518 3.290710 CCACCCCCTTCTGAATATTGTG 58.709 50.000 0.00 0.00 0.00 3.33
2478 2519 2.926329 ACCACCCCCTTCTGAATATTGT 59.074 45.455 0.00 0.00 0.00 2.71
2479 2520 3.290710 CACCACCCCCTTCTGAATATTG 58.709 50.000 0.00 0.00 0.00 1.90
2480 2521 2.244769 CCACCACCCCCTTCTGAATATT 59.755 50.000 0.00 0.00 0.00 1.28
2481 2522 1.852965 CCACCACCCCCTTCTGAATAT 59.147 52.381 0.00 0.00 0.00 1.28
2482 2523 1.295020 CCACCACCCCCTTCTGAATA 58.705 55.000 0.00 0.00 0.00 1.75
2483 2524 1.509548 CCCACCACCCCCTTCTGAAT 61.510 60.000 0.00 0.00 0.00 2.57
2484 2525 2.160171 CCCACCACCCCCTTCTGAA 61.160 63.158 0.00 0.00 0.00 3.02
2485 2526 2.531685 CCCACCACCCCCTTCTGA 60.532 66.667 0.00 0.00 0.00 3.27
2486 2527 2.018884 AAACCCACCACCCCCTTCTG 62.019 60.000 0.00 0.00 0.00 3.02
2487 2528 1.703597 AAACCCACCACCCCCTTCT 60.704 57.895 0.00 0.00 0.00 2.85
2488 2529 1.533033 CAAACCCACCACCCCCTTC 60.533 63.158 0.00 0.00 0.00 3.46
2489 2530 2.612251 CAAACCCACCACCCCCTT 59.388 61.111 0.00 0.00 0.00 3.95
2490 2531 4.233558 GCAAACCCACCACCCCCT 62.234 66.667 0.00 0.00 0.00 4.79
2491 2532 3.767044 AAGCAAACCCACCACCCCC 62.767 63.158 0.00 0.00 0.00 5.40
2492 2533 1.341913 AAAAGCAAACCCACCACCCC 61.342 55.000 0.00 0.00 0.00 4.95
2493 2534 0.179059 CAAAAGCAAACCCACCACCC 60.179 55.000 0.00 0.00 0.00 4.61
2494 2535 0.179059 CCAAAAGCAAACCCACCACC 60.179 55.000 0.00 0.00 0.00 4.61
2495 2536 0.539518 ACCAAAAGCAAACCCACCAC 59.460 50.000 0.00 0.00 0.00 4.16
2496 2537 1.208293 GAACCAAAAGCAAACCCACCA 59.792 47.619 0.00 0.00 0.00 4.17
2497 2538 1.474320 GGAACCAAAAGCAAACCCACC 60.474 52.381 0.00 0.00 0.00 4.61
2498 2539 1.484653 AGGAACCAAAAGCAAACCCAC 59.515 47.619 0.00 0.00 0.00 4.61
2499 2540 1.760029 GAGGAACCAAAAGCAAACCCA 59.240 47.619 0.00 0.00 0.00 4.51
2500 2541 1.070134 GGAGGAACCAAAAGCAAACCC 59.930 52.381 0.00 0.00 38.79 4.11
2501 2542 2.039418 AGGAGGAACCAAAAGCAAACC 58.961 47.619 0.00 0.00 42.04 3.27
2502 2543 4.809673 CATAGGAGGAACCAAAAGCAAAC 58.190 43.478 0.00 0.00 42.04 2.93
2503 2544 3.258123 GCATAGGAGGAACCAAAAGCAAA 59.742 43.478 0.00 0.00 42.04 3.68
2504 2545 2.825532 GCATAGGAGGAACCAAAAGCAA 59.174 45.455 0.00 0.00 42.04 3.91
2505 2546 2.224992 TGCATAGGAGGAACCAAAAGCA 60.225 45.455 0.00 0.00 42.04 3.91
2506 2547 2.164422 GTGCATAGGAGGAACCAAAAGC 59.836 50.000 0.00 0.00 42.04 3.51
2507 2548 3.191371 GTGTGCATAGGAGGAACCAAAAG 59.809 47.826 0.00 0.00 42.04 2.27
2508 2549 3.153919 GTGTGCATAGGAGGAACCAAAA 58.846 45.455 0.00 0.00 42.04 2.44
2509 2550 2.107378 TGTGTGCATAGGAGGAACCAAA 59.893 45.455 0.00 0.00 42.04 3.28
2510 2551 1.702401 TGTGTGCATAGGAGGAACCAA 59.298 47.619 0.00 0.00 42.04 3.67
2511 2552 1.357137 TGTGTGCATAGGAGGAACCA 58.643 50.000 0.00 0.00 42.04 3.67
2512 2553 2.359900 CTTGTGTGCATAGGAGGAACC 58.640 52.381 0.00 0.00 39.35 3.62
2513 2554 2.290323 ACCTTGTGTGCATAGGAGGAAC 60.290 50.000 16.08 0.00 33.21 3.62
2514 2555 1.985159 ACCTTGTGTGCATAGGAGGAA 59.015 47.619 16.08 0.00 33.21 3.36
2515 2556 1.278985 CACCTTGTGTGCATAGGAGGA 59.721 52.381 16.08 0.00 38.34 3.71
2516 2557 1.742761 CACCTTGTGTGCATAGGAGG 58.257 55.000 12.35 11.01 38.34 4.30
2517 2558 2.744202 GAACACCTTGTGTGCATAGGAG 59.256 50.000 12.35 8.06 46.79 3.69
2518 2559 2.778299 GAACACCTTGTGTGCATAGGA 58.222 47.619 12.35 0.00 46.79 2.94
2519 2560 1.464608 CGAACACCTTGTGTGCATAGG 59.535 52.381 6.19 0.00 46.79 2.57
2520 2561 2.880822 CGAACACCTTGTGTGCATAG 57.119 50.000 6.19 0.00 46.79 2.23


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.