Multiple sequence alignment - TraesCS3D01G080900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G080900 chr3D 100.000 2375 0 0 1 2375 40739070 40736696 0.000000e+00 4386.0
1 TraesCS3D01G080900 chr3D 84.124 548 79 8 1527 2070 305883712 305883169 7.520000e-145 523.0
2 TraesCS3D01G080900 chr3D 83.755 554 74 14 1527 2074 277069127 277068584 5.860000e-141 510.0
3 TraesCS3D01G080900 chr3D 82.384 562 92 7 1510 2067 434932890 434933448 1.280000e-132 483.0
4 TraesCS3D01G080900 chr3B 91.554 1634 122 13 749 2375 64299439 64297815 0.000000e+00 2239.0
5 TraesCS3D01G080900 chr3B 91.549 142 12 0 81 222 64300108 64299967 1.860000e-46 196.0
6 TraesCS3D01G080900 chr3B 90.000 80 8 0 2 81 64302868 64302789 1.160000e-18 104.0
7 TraesCS3D01G080900 chr3B 98.182 55 1 0 694 748 64299521 64299467 1.940000e-16 97.1
8 TraesCS3D01G080900 chr3A 94.025 887 47 5 749 1632 52447270 52446387 0.000000e+00 1339.0
9 TraesCS3D01G080900 chr5D 84.249 546 74 11 1528 2067 394531579 394532118 2.710000e-144 521.0
10 TraesCS3D01G080900 chr5D 83.681 527 78 7 1548 2070 373778684 373778162 7.630000e-135 490.0
11 TraesCS3D01G080900 chr5D 94.118 272 16 0 250 521 209326749 209326478 4.720000e-112 414.0
12 TraesCS3D01G080900 chr6D 83.274 562 82 12 1508 2066 357353244 357352692 7.570000e-140 507.0
13 TraesCS3D01G080900 chr4A 83.243 555 84 8 1510 2060 2178233 2178782 3.520000e-138 501.0
14 TraesCS3D01G080900 chr1D 82.832 565 91 6 1510 2070 365301602 365301040 3.520000e-138 501.0
15 TraesCS3D01G080900 chr1D 93.841 276 16 1 248 523 121098506 121098780 4.720000e-112 414.0
16 TraesCS3D01G080900 chr2A 94.565 276 15 0 248 523 470535662 470535937 6.070000e-116 427.0
17 TraesCS3D01G080900 chr2A 87.500 80 10 0 2 81 745212597 745212676 2.510000e-15 93.5
18 TraesCS3D01G080900 chr7D 94.203 276 15 1 248 523 276255180 276254906 1.020000e-113 420.0
19 TraesCS3D01G080900 chr7D 93.031 287 14 5 250 533 219883467 219883184 4.720000e-112 414.0
20 TraesCS3D01G080900 chr4D 93.907 279 16 1 245 523 149659816 149660093 1.020000e-113 420.0
21 TraesCS3D01G080900 chr2D 93.310 284 15 1 248 527 215487191 215486908 1.310000e-112 416.0
22 TraesCS3D01G080900 chr6A 92.708 288 19 2 247 533 55294551 55294837 4.720000e-112 414.0
23 TraesCS3D01G080900 chr1A 92.281 285 20 2 250 533 370889268 370888985 1.020000e-108 403.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G080900 chr3D 40736696 40739070 2374 True 4386.000 4386 100.00000 1 2375 1 chr3D.!!$R1 2374
1 TraesCS3D01G080900 chr3D 305883169 305883712 543 True 523.000 523 84.12400 1527 2070 1 chr3D.!!$R3 543
2 TraesCS3D01G080900 chr3D 277068584 277069127 543 True 510.000 510 83.75500 1527 2074 1 chr3D.!!$R2 547
3 TraesCS3D01G080900 chr3D 434932890 434933448 558 False 483.000 483 82.38400 1510 2067 1 chr3D.!!$F1 557
4 TraesCS3D01G080900 chr3B 64297815 64302868 5053 True 659.025 2239 92.82125 2 2375 4 chr3B.!!$R1 2373
5 TraesCS3D01G080900 chr3A 52446387 52447270 883 True 1339.000 1339 94.02500 749 1632 1 chr3A.!!$R1 883
6 TraesCS3D01G080900 chr5D 394531579 394532118 539 False 521.000 521 84.24900 1528 2067 1 chr5D.!!$F1 539
7 TraesCS3D01G080900 chr5D 373778162 373778684 522 True 490.000 490 83.68100 1548 2070 1 chr5D.!!$R2 522
8 TraesCS3D01G080900 chr6D 357352692 357353244 552 True 507.000 507 83.27400 1508 2066 1 chr6D.!!$R1 558
9 TraesCS3D01G080900 chr4A 2178233 2178782 549 False 501.000 501 83.24300 1510 2060 1 chr4A.!!$F1 550
10 TraesCS3D01G080900 chr1D 365301040 365301602 562 True 501.000 501 82.83200 1510 2070 1 chr1D.!!$R1 560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
656 3364 0.039035 TTGGGTGGGTGTTATCTGGC 59.961 55.0 0.0 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2250 5245 0.88649 GATAGCGGGCCATGTTGAGG 60.886 60.0 4.39 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 0.320334 TTCGGCGCTGAATGTTCTCA 60.320 50.000 27.37 2.89 0.00 3.27
59 60 2.302733 TGTTCTCAACTGGCTAGCATCA 59.697 45.455 18.24 5.21 0.00 3.07
60 61 2.935201 GTTCTCAACTGGCTAGCATCAG 59.065 50.000 18.24 17.31 37.07 2.90
85 2767 0.391661 TGTCTCAGCTTCGGAATGCC 60.392 55.000 8.05 0.00 0.00 4.40
115 2797 2.928334 CATAGAATTCAGCAGCCCTGT 58.072 47.619 8.44 0.00 42.38 4.00
142 2824 1.234615 TTCACGCAGCTACTTTGGCC 61.235 55.000 0.00 0.00 0.00 5.36
185 2867 3.877508 ACGTCGAGACAGATCACATATCA 59.122 43.478 0.00 0.00 0.00 2.15
192 2874 7.596621 TCGAGACAGATCACATATCAAAATAGC 59.403 37.037 0.00 0.00 0.00 2.97
196 2878 6.425114 ACAGATCACATATCAAAATAGCCGAC 59.575 38.462 0.00 0.00 0.00 4.79
215 2897 2.347490 GCGCTTTCTCCTCCCACA 59.653 61.111 0.00 0.00 0.00 4.17
222 2904 0.191064 TTCTCCTCCCACACACTCCT 59.809 55.000 0.00 0.00 0.00 3.69
223 2905 0.251832 TCTCCTCCCACACACTCCTC 60.252 60.000 0.00 0.00 0.00 3.71
224 2906 1.229209 TCCTCCCACACACTCCTCC 60.229 63.158 0.00 0.00 0.00 4.30
225 2907 2.294078 CCTCCCACACACTCCTCCC 61.294 68.421 0.00 0.00 0.00 4.30
227 2909 1.229209 TCCCACACACTCCTCCCTC 60.229 63.158 0.00 0.00 0.00 4.30
228 2910 2.650116 CCCACACACTCCTCCCTCG 61.650 68.421 0.00 0.00 0.00 4.63
229 2911 1.606601 CCACACACTCCTCCCTCGA 60.607 63.158 0.00 0.00 0.00 4.04
230 2912 1.599606 CCACACACTCCTCCCTCGAG 61.600 65.000 5.13 5.13 35.72 4.04
231 2913 0.609406 CACACACTCCTCCCTCGAGA 60.609 60.000 15.71 0.00 38.52 4.04
232 2914 0.609681 ACACACTCCTCCCTCGAGAC 60.610 60.000 15.71 0.00 38.52 3.36
233 2915 0.322997 CACACTCCTCCCTCGAGACT 60.323 60.000 15.71 0.00 38.52 3.24
234 2916 1.065345 CACACTCCTCCCTCGAGACTA 60.065 57.143 15.71 0.00 38.52 2.59
235 2917 1.634459 ACACTCCTCCCTCGAGACTAA 59.366 52.381 15.71 0.00 38.52 2.24
236 2918 2.041350 ACACTCCTCCCTCGAGACTAAA 59.959 50.000 15.71 0.00 38.52 1.85
237 2919 3.090037 CACTCCTCCCTCGAGACTAAAA 58.910 50.000 15.71 0.00 38.52 1.52
238 2920 3.090790 ACTCCTCCCTCGAGACTAAAAC 58.909 50.000 15.71 0.00 38.52 2.43
239 2921 2.089980 TCCTCCCTCGAGACTAAAACG 58.910 52.381 15.71 0.00 38.52 3.60
240 2922 1.469423 CCTCCCTCGAGACTAAAACGC 60.469 57.143 15.71 0.00 38.52 4.84
241 2923 1.473278 CTCCCTCGAGACTAAAACGCT 59.527 52.381 15.71 0.00 38.52 5.07
242 2924 1.201647 TCCCTCGAGACTAAAACGCTG 59.798 52.381 15.71 0.00 0.00 5.18
243 2925 1.630148 CCTCGAGACTAAAACGCTGG 58.370 55.000 15.71 0.00 0.00 4.85
244 2926 1.067776 CCTCGAGACTAAAACGCTGGT 60.068 52.381 15.71 0.00 0.00 4.00
245 2927 2.609737 CCTCGAGACTAAAACGCTGGTT 60.610 50.000 15.71 0.00 38.22 3.67
246 2928 2.400399 TCGAGACTAAAACGCTGGTTG 58.600 47.619 0.00 0.00 36.25 3.77
247 2929 2.132762 CGAGACTAAAACGCTGGTTGT 58.867 47.619 0.00 0.00 36.25 3.32
248 2930 2.542595 CGAGACTAAAACGCTGGTTGTT 59.457 45.455 0.00 0.00 36.25 2.83
249 2931 3.737266 CGAGACTAAAACGCTGGTTGTTA 59.263 43.478 0.00 0.00 36.25 2.41
250 2932 4.143389 CGAGACTAAAACGCTGGTTGTTAG 60.143 45.833 0.00 0.00 36.25 2.34
251 2933 4.952460 AGACTAAAACGCTGGTTGTTAGA 58.048 39.130 11.90 0.00 36.25 2.10
252 2934 4.748600 AGACTAAAACGCTGGTTGTTAGAC 59.251 41.667 11.90 8.27 36.25 2.59
253 2935 4.700700 ACTAAAACGCTGGTTGTTAGACT 58.299 39.130 11.90 0.00 36.25 3.24
254 2936 5.846203 ACTAAAACGCTGGTTGTTAGACTA 58.154 37.500 11.90 0.00 36.25 2.59
255 2937 5.693555 ACTAAAACGCTGGTTGTTAGACTAC 59.306 40.000 11.90 0.00 36.25 2.73
256 2938 2.738013 ACGCTGGTTGTTAGACTACC 57.262 50.000 5.00 5.00 42.97 3.18
257 2939 1.274447 ACGCTGGTTGTTAGACTACCC 59.726 52.381 8.76 0.00 42.18 3.69
258 2940 1.274167 CGCTGGTTGTTAGACTACCCA 59.726 52.381 8.76 0.00 42.18 4.51
259 2941 2.696506 GCTGGTTGTTAGACTACCCAC 58.303 52.381 8.76 0.00 42.18 4.61
260 2942 2.038033 GCTGGTTGTTAGACTACCCACA 59.962 50.000 8.76 0.00 42.18 4.17
261 2943 3.864921 GCTGGTTGTTAGACTACCCACAG 60.865 52.174 8.76 0.00 42.18 3.66
262 2944 3.311091 TGGTTGTTAGACTACCCACAGT 58.689 45.455 8.76 0.00 42.18 3.55
263 2945 3.070446 TGGTTGTTAGACTACCCACAGTG 59.930 47.826 8.76 0.00 42.18 3.66
264 2946 3.556423 GGTTGTTAGACTACCCACAGTGG 60.556 52.174 13.35 13.35 37.92 4.00
276 2958 3.611766 CCACAGTGGGAGTAACTTAGG 57.388 52.381 12.40 0.00 32.67 2.69
277 2959 2.904434 CCACAGTGGGAGTAACTTAGGT 59.096 50.000 12.40 0.00 32.67 3.08
278 2960 4.091549 CCACAGTGGGAGTAACTTAGGTA 58.908 47.826 12.40 0.00 32.67 3.08
279 2961 4.159879 CCACAGTGGGAGTAACTTAGGTAG 59.840 50.000 12.40 0.00 32.67 3.18
280 2962 4.771054 CACAGTGGGAGTAACTTAGGTAGT 59.229 45.833 0.00 0.00 39.32 2.73
281 2963 5.948162 CACAGTGGGAGTAACTTAGGTAGTA 59.052 44.000 0.00 0.00 35.54 1.82
282 2964 6.435277 CACAGTGGGAGTAACTTAGGTAGTAA 59.565 42.308 0.00 0.00 35.54 2.24
283 2965 6.435591 ACAGTGGGAGTAACTTAGGTAGTAAC 59.564 42.308 0.00 0.00 35.54 2.50
284 2966 6.435277 CAGTGGGAGTAACTTAGGTAGTAACA 59.565 42.308 0.00 0.00 35.54 2.41
285 2967 7.123847 CAGTGGGAGTAACTTAGGTAGTAACAT 59.876 40.741 0.00 0.00 35.54 2.71
286 2968 7.341512 AGTGGGAGTAACTTAGGTAGTAACATC 59.658 40.741 0.00 0.00 35.54 3.06
287 2969 7.123247 GTGGGAGTAACTTAGGTAGTAACATCA 59.877 40.741 0.00 0.00 35.54 3.07
288 2970 7.123247 TGGGAGTAACTTAGGTAGTAACATCAC 59.877 40.741 0.00 0.00 35.54 3.06
289 2971 7.192232 GGAGTAACTTAGGTAGTAACATCACG 58.808 42.308 0.00 0.00 35.54 4.35
290 2972 6.558909 AGTAACTTAGGTAGTAACATCACGC 58.441 40.000 0.00 0.00 35.54 5.34
291 2973 5.395682 AACTTAGGTAGTAACATCACGCA 57.604 39.130 0.00 0.00 35.54 5.24
292 2974 5.593679 ACTTAGGTAGTAACATCACGCAT 57.406 39.130 0.00 0.00 34.56 4.73
293 2975 6.704289 ACTTAGGTAGTAACATCACGCATA 57.296 37.500 0.00 0.00 34.56 3.14
294 2976 7.286215 ACTTAGGTAGTAACATCACGCATAT 57.714 36.000 0.00 0.00 34.56 1.78
295 2977 7.368833 ACTTAGGTAGTAACATCACGCATATC 58.631 38.462 0.00 0.00 34.56 1.63
296 2978 7.230913 ACTTAGGTAGTAACATCACGCATATCT 59.769 37.037 0.00 0.00 34.56 1.98
297 2979 8.625786 TTAGGTAGTAACATCACGCATATCTA 57.374 34.615 0.00 0.00 0.00 1.98
298 2980 7.147143 AGGTAGTAACATCACGCATATCTAG 57.853 40.000 0.00 0.00 0.00 2.43
299 2981 6.940867 AGGTAGTAACATCACGCATATCTAGA 59.059 38.462 0.00 0.00 0.00 2.43
300 2982 7.612244 AGGTAGTAACATCACGCATATCTAGAT 59.388 37.037 10.73 10.73 0.00 1.98
301 2983 8.890718 GGTAGTAACATCACGCATATCTAGATA 58.109 37.037 14.76 14.76 0.00 1.98
320 3002 9.716531 TCTAGATAAAATAGATGATGTGGCAAG 57.283 33.333 0.00 0.00 0.00 4.01
321 3003 7.211966 AGATAAAATAGATGATGTGGCAAGC 57.788 36.000 0.00 0.00 0.00 4.01
322 3004 6.774170 AGATAAAATAGATGATGTGGCAAGCA 59.226 34.615 0.00 0.00 0.00 3.91
323 3005 5.664294 AAAATAGATGATGTGGCAAGCAA 57.336 34.783 0.00 0.00 0.00 3.91
324 3006 5.864418 AAATAGATGATGTGGCAAGCAAT 57.136 34.783 0.00 0.00 0.00 3.56
325 3007 6.964807 AAATAGATGATGTGGCAAGCAATA 57.035 33.333 0.00 0.00 0.00 1.90
326 3008 6.964807 AATAGATGATGTGGCAAGCAATAA 57.035 33.333 0.00 0.00 0.00 1.40
327 3009 6.964807 ATAGATGATGTGGCAAGCAATAAA 57.035 33.333 0.00 0.00 0.00 1.40
328 3010 5.864418 AGATGATGTGGCAAGCAATAAAT 57.136 34.783 0.00 0.00 0.00 1.40
329 3011 5.597806 AGATGATGTGGCAAGCAATAAATG 58.402 37.500 0.00 0.00 0.00 2.32
330 3012 5.361571 AGATGATGTGGCAAGCAATAAATGA 59.638 36.000 0.00 0.00 0.00 2.57
331 3013 5.402997 TGATGTGGCAAGCAATAAATGAA 57.597 34.783 0.00 0.00 0.00 2.57
332 3014 5.412640 TGATGTGGCAAGCAATAAATGAAG 58.587 37.500 0.00 0.00 0.00 3.02
333 3015 5.185442 TGATGTGGCAAGCAATAAATGAAGA 59.815 36.000 0.00 0.00 0.00 2.87
334 3016 5.063180 TGTGGCAAGCAATAAATGAAGAG 57.937 39.130 0.00 0.00 0.00 2.85
335 3017 4.766373 TGTGGCAAGCAATAAATGAAGAGA 59.234 37.500 0.00 0.00 0.00 3.10
336 3018 5.106038 TGTGGCAAGCAATAAATGAAGAGAG 60.106 40.000 0.00 0.00 0.00 3.20
337 3019 5.124457 GTGGCAAGCAATAAATGAAGAGAGA 59.876 40.000 0.00 0.00 0.00 3.10
338 3020 5.356190 TGGCAAGCAATAAATGAAGAGAGAG 59.644 40.000 0.00 0.00 0.00 3.20
339 3021 5.587844 GGCAAGCAATAAATGAAGAGAGAGA 59.412 40.000 0.00 0.00 0.00 3.10
340 3022 6.238429 GGCAAGCAATAAATGAAGAGAGAGAG 60.238 42.308 0.00 0.00 0.00 3.20
341 3023 6.238429 GCAAGCAATAAATGAAGAGAGAGAGG 60.238 42.308 0.00 0.00 0.00 3.69
342 3024 5.367302 AGCAATAAATGAAGAGAGAGAGGC 58.633 41.667 0.00 0.00 0.00 4.70
343 3025 5.104610 AGCAATAAATGAAGAGAGAGAGGCA 60.105 40.000 0.00 0.00 0.00 4.75
344 3026 5.764192 GCAATAAATGAAGAGAGAGAGGCAT 59.236 40.000 0.00 0.00 0.00 4.40
345 3027 6.293516 GCAATAAATGAAGAGAGAGAGGCATG 60.294 42.308 0.00 0.00 0.00 4.06
346 3028 2.914695 ATGAAGAGAGAGAGGCATGC 57.085 50.000 9.90 9.90 0.00 4.06
347 3029 0.459078 TGAAGAGAGAGAGGCATGCG 59.541 55.000 12.44 0.00 0.00 4.73
348 3030 0.249405 GAAGAGAGAGAGGCATGCGG 60.249 60.000 12.44 0.00 0.00 5.69
349 3031 0.975040 AAGAGAGAGAGGCATGCGGT 60.975 55.000 12.44 0.26 0.00 5.68
350 3032 0.106469 AGAGAGAGAGGCATGCGGTA 60.106 55.000 12.44 0.00 0.00 4.02
351 3033 0.747255 GAGAGAGAGGCATGCGGTAA 59.253 55.000 12.44 0.00 0.00 2.85
352 3034 0.461961 AGAGAGAGGCATGCGGTAAC 59.538 55.000 12.44 0.00 0.00 2.50
353 3035 0.175760 GAGAGAGGCATGCGGTAACA 59.824 55.000 12.44 0.00 0.00 2.41
354 3036 0.833287 AGAGAGGCATGCGGTAACAT 59.167 50.000 12.44 0.00 0.00 2.71
355 3037 2.035961 GAGAGAGGCATGCGGTAACATA 59.964 50.000 12.44 0.00 0.00 2.29
356 3038 2.036475 AGAGAGGCATGCGGTAACATAG 59.964 50.000 12.44 0.00 0.00 2.23
357 3039 0.868406 GAGGCATGCGGTAACATAGC 59.132 55.000 12.44 0.00 0.00 2.97
358 3040 0.469917 AGGCATGCGGTAACATAGCT 59.530 50.000 12.44 0.00 0.00 3.32
359 3041 1.691976 AGGCATGCGGTAACATAGCTA 59.308 47.619 12.44 0.00 0.00 3.32
360 3042 2.069273 GGCATGCGGTAACATAGCTAG 58.931 52.381 12.44 0.00 0.00 3.42
361 3043 2.548067 GGCATGCGGTAACATAGCTAGT 60.548 50.000 12.44 0.00 0.00 2.57
362 3044 3.131396 GCATGCGGTAACATAGCTAGTT 58.869 45.455 0.00 6.69 0.00 2.24
363 3045 4.304110 GCATGCGGTAACATAGCTAGTTA 58.696 43.478 0.00 5.74 0.00 2.24
364 3046 4.150098 GCATGCGGTAACATAGCTAGTTAC 59.850 45.833 23.79 23.79 46.53 2.50
365 3047 5.529791 CATGCGGTAACATAGCTAGTTACT 58.470 41.667 27.05 15.66 46.49 2.24
366 3048 6.675026 CATGCGGTAACATAGCTAGTTACTA 58.325 40.000 27.05 19.97 46.49 1.82
367 3049 6.309712 TGCGGTAACATAGCTAGTTACTAG 57.690 41.667 27.05 23.63 46.49 2.57
368 3050 5.824624 TGCGGTAACATAGCTAGTTACTAGT 59.175 40.000 27.05 0.00 46.49 2.57
369 3051 6.992123 TGCGGTAACATAGCTAGTTACTAGTA 59.008 38.462 27.05 21.67 46.49 1.82
370 3052 7.172190 TGCGGTAACATAGCTAGTTACTAGTAG 59.828 40.741 27.05 19.60 46.49 2.57
371 3053 7.172361 GCGGTAACATAGCTAGTTACTAGTAGT 59.828 40.741 27.05 8.14 46.49 2.73
372 3054 9.698309 CGGTAACATAGCTAGTTACTAGTAGTA 57.302 37.037 27.05 5.90 46.49 1.82
388 3070 8.803397 ACTAGTAGTATGAGTAACATCACACA 57.197 34.615 0.00 0.00 40.07 3.72
389 3071 9.409918 ACTAGTAGTATGAGTAACATCACACAT 57.590 33.333 0.00 0.00 40.07 3.21
395 3077 9.755804 AGTATGAGTAACATCACACATATCAAG 57.244 33.333 0.00 0.00 40.07 3.02
396 3078 8.982685 GTATGAGTAACATCACACATATCAAGG 58.017 37.037 0.00 0.00 40.07 3.61
397 3079 5.817296 TGAGTAACATCACACATATCAAGGC 59.183 40.000 0.00 0.00 0.00 4.35
398 3080 5.744171 AGTAACATCACACATATCAAGGCA 58.256 37.500 0.00 0.00 0.00 4.75
399 3081 6.179756 AGTAACATCACACATATCAAGGCAA 58.820 36.000 0.00 0.00 0.00 4.52
400 3082 5.571784 AACATCACACATATCAAGGCAAG 57.428 39.130 0.00 0.00 0.00 4.01
401 3083 4.847198 ACATCACACATATCAAGGCAAGA 58.153 39.130 0.00 0.00 0.00 3.02
402 3084 5.443283 ACATCACACATATCAAGGCAAGAT 58.557 37.500 0.00 0.00 0.00 2.40
403 3085 5.298527 ACATCACACATATCAAGGCAAGATG 59.701 40.000 0.00 0.00 36.24 2.90
404 3086 5.101648 TCACACATATCAAGGCAAGATGA 57.898 39.130 2.43 0.00 0.00 2.92
405 3087 5.121105 TCACACATATCAAGGCAAGATGAG 58.879 41.667 2.43 0.00 0.00 2.90
406 3088 4.880120 CACACATATCAAGGCAAGATGAGT 59.120 41.667 2.43 0.00 0.00 3.41
407 3089 5.007430 CACACATATCAAGGCAAGATGAGTC 59.993 44.000 2.43 0.00 0.00 3.36
408 3090 5.104610 ACACATATCAAGGCAAGATGAGTCT 60.105 40.000 2.43 0.00 35.82 3.24
409 3091 6.098838 ACACATATCAAGGCAAGATGAGTCTA 59.901 38.462 2.43 0.00 33.30 2.59
410 3092 7.160049 CACATATCAAGGCAAGATGAGTCTAT 58.840 38.462 2.43 0.00 33.30 1.98
411 3093 8.309656 CACATATCAAGGCAAGATGAGTCTATA 58.690 37.037 2.43 0.00 33.30 1.31
412 3094 8.530311 ACATATCAAGGCAAGATGAGTCTATAG 58.470 37.037 0.00 0.00 33.30 1.31
413 3095 6.992664 ATCAAGGCAAGATGAGTCTATAGT 57.007 37.500 0.00 0.00 33.30 2.12
414 3096 6.398234 TCAAGGCAAGATGAGTCTATAGTC 57.602 41.667 0.00 0.00 33.30 2.59
415 3097 6.132658 TCAAGGCAAGATGAGTCTATAGTCT 58.867 40.000 0.00 0.00 33.30 3.24
416 3098 7.290813 TCAAGGCAAGATGAGTCTATAGTCTA 58.709 38.462 0.00 0.00 33.30 2.59
417 3099 7.780271 TCAAGGCAAGATGAGTCTATAGTCTAA 59.220 37.037 0.00 0.00 33.30 2.10
418 3100 8.584157 CAAGGCAAGATGAGTCTATAGTCTAAT 58.416 37.037 0.00 0.00 33.30 1.73
419 3101 9.815306 AAGGCAAGATGAGTCTATAGTCTAATA 57.185 33.333 0.00 0.00 33.30 0.98
420 3102 9.815306 AGGCAAGATGAGTCTATAGTCTAATAA 57.185 33.333 0.00 0.00 33.30 1.40
436 3118 8.340618 AGTCTAATAAATGAAGTGTTGCATGT 57.659 30.769 0.00 0.00 0.00 3.21
437 3119 8.796475 AGTCTAATAAATGAAGTGTTGCATGTT 58.204 29.630 0.00 0.00 0.00 2.71
440 3122 9.289303 CTAATAAATGAAGTGTTGCATGTTACC 57.711 33.333 0.00 0.00 0.00 2.85
441 3123 5.528043 AAATGAAGTGTTGCATGTTACCA 57.472 34.783 0.00 0.00 0.00 3.25
442 3124 3.980646 TGAAGTGTTGCATGTTACCAC 57.019 42.857 0.00 0.00 0.00 4.16
443 3125 3.282885 TGAAGTGTTGCATGTTACCACA 58.717 40.909 0.00 0.00 37.31 4.17
444 3126 3.888323 TGAAGTGTTGCATGTTACCACAT 59.112 39.130 0.00 0.00 45.18 3.21
445 3127 5.066593 TGAAGTGTTGCATGTTACCACATA 58.933 37.500 0.00 0.00 42.14 2.29
446 3128 5.709631 TGAAGTGTTGCATGTTACCACATAT 59.290 36.000 0.00 0.00 42.14 1.78
447 3129 6.881602 TGAAGTGTTGCATGTTACCACATATA 59.118 34.615 0.00 0.00 42.14 0.86
448 3130 7.555914 TGAAGTGTTGCATGTTACCACATATAT 59.444 33.333 0.00 0.00 42.14 0.86
449 3131 7.263100 AGTGTTGCATGTTACCACATATATG 57.737 36.000 11.29 11.29 42.14 1.78
450 3132 6.828273 AGTGTTGCATGTTACCACATATATGT 59.172 34.615 12.75 12.75 42.14 2.29
451 3133 7.339212 AGTGTTGCATGTTACCACATATATGTT 59.661 33.333 15.85 5.50 42.14 2.71
452 3134 8.616942 GTGTTGCATGTTACCACATATATGTTA 58.383 33.333 15.85 4.50 42.14 2.41
453 3135 8.616942 TGTTGCATGTTACCACATATATGTTAC 58.383 33.333 15.85 11.59 42.14 2.50
454 3136 8.836413 GTTGCATGTTACCACATATATGTTACT 58.164 33.333 15.85 4.09 42.14 2.24
455 3137 8.601845 TGCATGTTACCACATATATGTTACTC 57.398 34.615 15.85 6.72 42.14 2.59
456 3138 7.659799 TGCATGTTACCACATATATGTTACTCC 59.340 37.037 15.85 5.35 42.14 3.85
457 3139 7.878127 GCATGTTACCACATATATGTTACTCCT 59.122 37.037 15.85 0.00 42.14 3.69
458 3140 9.424319 CATGTTACCACATATATGTTACTCCTC 57.576 37.037 15.85 4.86 42.14 3.71
459 3141 8.541899 TGTTACCACATATATGTTACTCCTCA 57.458 34.615 15.85 7.10 39.39 3.86
460 3142 8.418662 TGTTACCACATATATGTTACTCCTCAC 58.581 37.037 15.85 5.91 39.39 3.51
461 3143 8.639761 GTTACCACATATATGTTACTCCTCACT 58.360 37.037 15.85 0.00 39.39 3.41
462 3144 9.871175 TTACCACATATATGTTACTCCTCACTA 57.129 33.333 15.85 0.00 39.39 2.74
463 3145 8.958060 ACCACATATATGTTACTCCTCACTAT 57.042 34.615 15.85 0.00 39.39 2.12
511 3193 7.195374 ACATAGACATGTTACTACCCATTGT 57.805 36.000 0.00 0.00 42.98 2.71
512 3194 7.047891 ACATAGACATGTTACTACCCATTGTG 58.952 38.462 0.00 0.00 42.98 3.33
513 3195 4.843728 AGACATGTTACTACCCATTGTGG 58.156 43.478 0.00 0.00 37.25 4.17
514 3196 3.352648 ACATGTTACTACCCATTGTGGC 58.647 45.455 0.00 0.00 35.79 5.01
515 3197 3.010138 ACATGTTACTACCCATTGTGGCT 59.990 43.478 0.00 0.00 35.79 4.75
516 3198 4.226394 ACATGTTACTACCCATTGTGGCTA 59.774 41.667 0.00 0.00 35.79 3.93
517 3199 4.481368 TGTTACTACCCATTGTGGCTAG 57.519 45.455 0.00 0.00 35.79 3.42
518 3200 3.841845 TGTTACTACCCATTGTGGCTAGT 59.158 43.478 8.55 8.55 35.79 2.57
519 3201 4.081309 TGTTACTACCCATTGTGGCTAGTC 60.081 45.833 7.13 0.00 35.79 2.59
520 3202 2.834113 ACTACCCATTGTGGCTAGTCT 58.166 47.619 0.00 0.00 35.79 3.24
521 3203 3.182152 ACTACCCATTGTGGCTAGTCTT 58.818 45.455 0.00 0.00 35.79 3.01
522 3204 4.359105 ACTACCCATTGTGGCTAGTCTTA 58.641 43.478 0.00 0.00 35.79 2.10
523 3205 3.914426 ACCCATTGTGGCTAGTCTTAG 57.086 47.619 0.00 0.00 35.79 2.18
545 3227 0.614979 AGTATGTGTGGCTCTCCCGT 60.615 55.000 0.00 0.00 35.87 5.28
549 3231 3.636231 TGTGGCTCTCCCGTTGGG 61.636 66.667 0.00 0.00 46.11 4.12
583 3291 0.105224 CGGGTTACCTGTGTGTGTGA 59.895 55.000 1.23 0.00 33.28 3.58
584 3292 1.872237 CGGGTTACCTGTGTGTGTGAG 60.872 57.143 1.23 0.00 33.28 3.51
585 3293 1.414919 GGGTTACCTGTGTGTGTGAGA 59.585 52.381 0.00 0.00 0.00 3.27
587 3295 2.364324 GGTTACCTGTGTGTGTGAGAGA 59.636 50.000 0.00 0.00 0.00 3.10
589 3297 2.073252 ACCTGTGTGTGTGAGAGAGA 57.927 50.000 0.00 0.00 0.00 3.10
592 3300 2.030363 CCTGTGTGTGTGAGAGAGAGAC 60.030 54.545 0.00 0.00 0.00 3.36
593 3301 2.884012 CTGTGTGTGTGAGAGAGAGACT 59.116 50.000 0.00 0.00 0.00 3.24
595 3303 3.316588 TGTGTGTGTGAGAGAGAGACTTC 59.683 47.826 0.00 0.00 0.00 3.01
597 3305 3.567585 TGTGTGTGAGAGAGAGACTTCTG 59.432 47.826 0.00 0.00 32.53 3.02
599 3307 4.071423 TGTGTGAGAGAGAGACTTCTGAG 58.929 47.826 0.00 0.00 32.53 3.35
600 3308 3.081061 TGTGAGAGAGAGACTTCTGAGC 58.919 50.000 0.00 0.00 32.53 4.26
602 3310 3.758554 GTGAGAGAGAGACTTCTGAGCTT 59.241 47.826 0.00 0.00 32.53 3.74
603 3311 4.218417 GTGAGAGAGAGACTTCTGAGCTTT 59.782 45.833 0.00 0.00 32.53 3.51
604 3312 4.832266 TGAGAGAGAGACTTCTGAGCTTTT 59.168 41.667 0.00 0.00 32.53 2.27
605 3313 5.138125 AGAGAGAGACTTCTGAGCTTTTG 57.862 43.478 0.00 0.00 32.53 2.44
606 3314 4.588528 AGAGAGAGACTTCTGAGCTTTTGT 59.411 41.667 0.00 0.00 32.53 2.83
607 3315 4.881920 AGAGAGACTTCTGAGCTTTTGTC 58.118 43.478 0.00 0.00 32.53 3.18
608 3316 3.648009 AGAGACTTCTGAGCTTTTGTCG 58.352 45.455 0.00 0.00 30.72 4.35
610 3318 3.126831 AGACTTCTGAGCTTTTGTCGTG 58.873 45.455 0.00 0.00 0.00 4.35
612 3320 2.213499 CTTCTGAGCTTTTGTCGTGGT 58.787 47.619 0.00 0.00 0.00 4.16
613 3321 1.581934 TCTGAGCTTTTGTCGTGGTG 58.418 50.000 0.00 0.00 0.00 4.17
617 3325 2.750166 TGAGCTTTTGTCGTGGTGAAAA 59.250 40.909 0.00 0.00 0.00 2.29
619 3327 4.576873 TGAGCTTTTGTCGTGGTGAAAATA 59.423 37.500 0.00 0.00 0.00 1.40
620 3328 5.066634 TGAGCTTTTGTCGTGGTGAAAATAA 59.933 36.000 0.00 0.00 0.00 1.40
621 3329 5.519722 AGCTTTTGTCGTGGTGAAAATAAG 58.480 37.500 0.00 0.00 0.00 1.73
623 3331 5.974751 GCTTTTGTCGTGGTGAAAATAAGAA 59.025 36.000 0.00 0.00 0.00 2.52
624 3332 6.474102 GCTTTTGTCGTGGTGAAAATAAGAAA 59.526 34.615 0.00 0.00 0.00 2.52
625 3333 7.305993 GCTTTTGTCGTGGTGAAAATAAGAAAG 60.306 37.037 0.00 0.00 0.00 2.62
626 3334 5.682943 TGTCGTGGTGAAAATAAGAAAGG 57.317 39.130 0.00 0.00 0.00 3.11
627 3335 5.369833 TGTCGTGGTGAAAATAAGAAAGGA 58.630 37.500 0.00 0.00 0.00 3.36
628 3336 5.823570 TGTCGTGGTGAAAATAAGAAAGGAA 59.176 36.000 0.00 0.00 0.00 3.36
629 3337 6.319152 TGTCGTGGTGAAAATAAGAAAGGAAA 59.681 34.615 0.00 0.00 0.00 3.13
631 3339 6.544564 TCGTGGTGAAAATAAGAAAGGAAAGT 59.455 34.615 0.00 0.00 0.00 2.66
632 3340 7.067737 TCGTGGTGAAAATAAGAAAGGAAAGTT 59.932 33.333 0.00 0.00 0.00 2.66
633 3341 7.704899 CGTGGTGAAAATAAGAAAGGAAAGTTT 59.295 33.333 0.00 0.00 0.00 2.66
636 3344 9.472361 GGTGAAAATAAGAAAGGAAAGTTTACC 57.528 33.333 0.00 0.00 0.00 2.85
641 3349 7.776618 ATAAGAAAGGAAAGTTTACCTTGGG 57.223 36.000 15.65 0.00 44.44 4.12
642 3350 5.138758 AGAAAGGAAAGTTTACCTTGGGT 57.861 39.130 15.65 5.28 44.44 4.51
643 3351 4.893524 AGAAAGGAAAGTTTACCTTGGGTG 59.106 41.667 15.65 0.00 44.44 4.61
644 3352 3.238788 AGGAAAGTTTACCTTGGGTGG 57.761 47.619 0.00 0.00 36.19 4.61
645 3353 2.158370 AGGAAAGTTTACCTTGGGTGGG 60.158 50.000 0.00 0.00 36.19 4.61
646 3354 2.425247 GGAAAGTTTACCTTGGGTGGGT 60.425 50.000 0.00 0.00 36.19 4.51
647 3355 2.375014 AAGTTTACCTTGGGTGGGTG 57.625 50.000 0.00 0.00 36.19 4.61
648 3356 1.228190 AGTTTACCTTGGGTGGGTGT 58.772 50.000 0.00 0.00 36.19 4.16
649 3357 1.571936 AGTTTACCTTGGGTGGGTGTT 59.428 47.619 0.00 0.00 36.19 3.32
650 3358 2.784682 AGTTTACCTTGGGTGGGTGTTA 59.215 45.455 0.00 0.00 36.19 2.41
654 3362 1.354368 ACCTTGGGTGGGTGTTATCTG 59.646 52.381 0.00 0.00 35.51 2.90
655 3363 1.340991 CCTTGGGTGGGTGTTATCTGG 60.341 57.143 0.00 0.00 0.00 3.86
656 3364 0.039035 TTGGGTGGGTGTTATCTGGC 59.961 55.000 0.00 0.00 0.00 4.85
658 3366 1.298667 GGTGGGTGTTATCTGGCGT 59.701 57.895 0.00 0.00 0.00 5.68
659 3367 0.538118 GGTGGGTGTTATCTGGCGTA 59.462 55.000 0.00 0.00 0.00 4.42
660 3368 1.472728 GGTGGGTGTTATCTGGCGTAG 60.473 57.143 0.00 0.00 0.00 3.51
661 3369 1.479323 GTGGGTGTTATCTGGCGTAGA 59.521 52.381 0.00 0.00 40.37 2.59
663 3371 3.319972 GTGGGTGTTATCTGGCGTAGATA 59.680 47.826 7.24 7.24 44.32 1.98
664 3372 3.572682 TGGGTGTTATCTGGCGTAGATAG 59.427 47.826 10.15 0.00 46.30 2.08
665 3373 3.056749 GGGTGTTATCTGGCGTAGATAGG 60.057 52.174 10.15 0.00 46.30 2.57
666 3374 3.056749 GGTGTTATCTGGCGTAGATAGGG 60.057 52.174 10.15 0.00 46.30 3.53
667 3375 3.056749 GTGTTATCTGGCGTAGATAGGGG 60.057 52.174 10.15 0.00 46.30 4.79
668 3376 1.848652 TATCTGGCGTAGATAGGGGC 58.151 55.000 7.24 0.00 44.32 5.80
669 3377 0.178932 ATCTGGCGTAGATAGGGGCA 60.179 55.000 2.99 0.00 44.32 5.36
670 3378 1.113517 TCTGGCGTAGATAGGGGCAC 61.114 60.000 0.00 0.00 32.46 5.01
671 3379 1.382009 TGGCGTAGATAGGGGCACA 60.382 57.895 0.00 0.00 0.00 4.57
673 3381 1.301009 GCGTAGATAGGGGCACAGC 60.301 63.158 0.00 0.00 0.00 4.40
684 3392 3.690745 GCACAGCCAGCCTGAAAT 58.309 55.556 0.00 0.00 44.64 2.17
686 3394 1.176527 GCACAGCCAGCCTGAAATAA 58.823 50.000 0.00 0.00 44.64 1.40
687 3395 1.135286 GCACAGCCAGCCTGAAATAAC 60.135 52.381 0.00 0.00 44.64 1.89
689 3397 1.075374 ACAGCCAGCCTGAAATAACCA 59.925 47.619 0.00 0.00 44.64 3.67
690 3398 1.474077 CAGCCAGCCTGAAATAACCAC 59.526 52.381 0.00 0.00 44.64 4.16
691 3399 1.075374 AGCCAGCCTGAAATAACCACA 59.925 47.619 0.00 0.00 0.00 4.17
692 3400 1.474077 GCCAGCCTGAAATAACCACAG 59.526 52.381 0.00 0.00 0.00 3.66
729 3682 4.834406 ATCTGAGGGAGGTACTATCCAA 57.166 45.455 16.34 4.32 41.55 3.53
758 3738 0.331954 TTCTCTCCCCTAGCACGAGT 59.668 55.000 0.00 0.00 0.00 4.18
944 3924 7.962441 ACTAAGCCAACATAGAAACCATTTTT 58.038 30.769 0.00 0.00 0.00 1.94
1024 4004 3.049912 GCAACAACGTTTTCTTCCATCC 58.950 45.455 0.00 0.00 0.00 3.51
1099 4079 5.129650 GCCTGTAAGTCCCTCTATTTTCTCT 59.870 44.000 0.00 0.00 0.00 3.10
1149 4129 2.954318 CCTAAGAAATCCCTGTGCCATG 59.046 50.000 0.00 0.00 0.00 3.66
1201 4181 4.434520 GGGACCTTTCAAGACTATCGAAG 58.565 47.826 0.00 0.00 0.00 3.79
1206 4186 6.102663 ACCTTTCAAGACTATCGAAGTGATG 58.897 40.000 5.20 4.76 39.07 3.07
1379 4359 4.124970 TGTTGCTGTCTCATATGAGCATC 58.875 43.478 25.27 20.36 40.97 3.91
1392 4372 2.345876 TGAGCATCACCGTGTAATGTG 58.654 47.619 0.00 0.00 42.56 3.21
1471 4456 3.578688 GCAAATCTGCCGAGAATTTTGT 58.421 40.909 4.55 0.00 43.26 2.83
1515 4500 4.263905 ACATGAACCTCTGATTTAGGGCAA 60.264 41.667 0.00 0.00 38.54 4.52
1521 4506 3.117738 CCTCTGATTTAGGGCAAGTCCAT 60.118 47.826 0.00 0.00 36.21 3.41
1620 4605 1.078214 TCTACGACGTGGTCCGGAT 60.078 57.895 7.81 0.00 42.24 4.18
1678 4664 0.324943 ATTTGTGGGAGTCCGGACAG 59.675 55.000 35.00 0.00 35.24 3.51
1690 4676 0.817654 CCGGACAGCAGACACATAGA 59.182 55.000 0.00 0.00 0.00 1.98
1705 4692 1.747355 CATAGAAGTACGACACCCCGT 59.253 52.381 0.00 0.00 45.54 5.28
1977 4968 1.238439 CAGGTGTTCGGTCAAATGCT 58.762 50.000 0.00 0.00 0.00 3.79
2007 5000 5.909610 GCTTATTTGAAATGCTATGTCGTCC 59.090 40.000 0.00 0.00 0.00 4.79
2067 5061 1.197492 GATGAGTTGTTGTGCGATGCA 59.803 47.619 0.00 0.00 35.60 3.96
2087 5082 8.751335 CGATGCATGTTGGTTTAATTAATTACC 58.249 33.333 2.46 9.86 0.00 2.85
2196 5191 4.771590 AATCAATTTGAAAGAGCTCGCA 57.228 36.364 8.37 5.46 0.00 5.10
2197 5192 4.771590 ATCAATTTGAAAGAGCTCGCAA 57.228 36.364 8.37 11.43 0.00 4.85
2243 5238 0.319555 GACGTTGGTGACTGCTAGCA 60.320 55.000 18.22 18.22 0.00 3.49
2252 5247 3.953300 CTGCTAGCAGGCTCTCCT 58.047 61.111 33.06 0.00 45.66 3.69
2254 5249 1.000866 TGCTAGCAGGCTCTCCTCA 59.999 57.895 14.93 0.00 41.93 3.86
2264 5259 1.153289 CTCTCCTCAACATGGCCCG 60.153 63.158 0.00 0.00 0.00 6.13
2266 5261 3.329889 TCCTCAACATGGCCCGCT 61.330 61.111 0.00 0.00 0.00 5.52
2279 5274 0.038159 GCCCGCTATCGCTTGACTAT 60.038 55.000 0.00 0.00 0.00 2.12
2291 5286 2.544267 GCTTGACTATATGGACAACGGC 59.456 50.000 0.15 0.90 0.00 5.68
2298 5293 1.769716 TATGGACAACGGCCACCACA 61.770 55.000 2.24 0.00 38.44 4.17
2314 5309 4.506758 CACCACACACTCATGATATGTGA 58.493 43.478 31.78 0.00 45.34 3.58
2323 5318 6.097412 ACACTCATGATATGTGAGACTAAGCA 59.903 38.462 17.68 0.00 44.57 3.91
2335 5330 7.386059 TGTGAGACTAAGCATTACAAAGATGA 58.614 34.615 0.00 0.00 0.00 2.92
2362 5357 0.534412 CCATTCTCTGCAGGACGTCT 59.466 55.000 16.46 0.00 0.00 4.18
2369 5364 0.807667 CTGCAGGACGTCTACATGCC 60.808 60.000 22.96 6.20 43.00 4.40
2372 5367 0.525668 CAGGACGTCTACATGCCGAC 60.526 60.000 16.46 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.296748 TCGATATTTCGCAGATGATCCAAA 58.703 37.500 0.18 0.00 45.10 3.28
29 30 1.135859 CAGTTGAGAACATTCAGCGCC 60.136 52.381 2.29 0.00 34.02 6.53
30 31 1.135859 CCAGTTGAGAACATTCAGCGC 60.136 52.381 0.00 0.00 34.02 5.92
31 32 1.135859 GCCAGTTGAGAACATTCAGCG 60.136 52.381 0.00 0.00 34.02 5.18
45 46 1.209019 CCTCACTGATGCTAGCCAGTT 59.791 52.381 20.12 6.96 41.26 3.16
59 60 0.600557 CGAAGCTGAGACACCTCACT 59.399 55.000 0.00 0.00 44.01 3.41
60 61 0.389166 CCGAAGCTGAGACACCTCAC 60.389 60.000 0.00 0.00 44.01 3.51
85 2767 4.811024 TGCTGAATTCTATGCTAGAAACGG 59.189 41.667 7.05 10.95 46.81 4.44
87 2769 5.277731 GGCTGCTGAATTCTATGCTAGAAAC 60.278 44.000 7.05 7.57 46.81 2.78
92 2774 2.707791 AGGGCTGCTGAATTCTATGCTA 59.292 45.455 7.05 0.45 0.00 3.49
101 2783 1.376424 CGTGACAGGGCTGCTGAAT 60.376 57.895 0.00 0.00 0.00 2.57
102 2784 2.031012 CGTGACAGGGCTGCTGAA 59.969 61.111 0.00 0.00 0.00 3.02
115 2797 1.520600 TAGCTGCGTGAAGGTCGTGA 61.521 55.000 0.00 0.00 0.00 4.35
192 2874 4.436998 AGGAGAAAGCGCCGTCGG 62.437 66.667 6.99 6.99 39.22 4.79
196 2878 4.082523 TGGGAGGAGAAAGCGCCG 62.083 66.667 2.29 0.00 39.22 6.46
202 2884 1.056660 GGAGTGTGTGGGAGGAGAAA 58.943 55.000 0.00 0.00 0.00 2.52
215 2897 1.287217 TAGTCTCGAGGGAGGAGTGT 58.713 55.000 13.56 0.00 40.85 3.55
222 2904 1.201647 CAGCGTTTTAGTCTCGAGGGA 59.798 52.381 13.56 0.00 0.00 4.20
223 2905 1.630148 CAGCGTTTTAGTCTCGAGGG 58.370 55.000 13.56 0.00 0.00 4.30
224 2906 1.067776 ACCAGCGTTTTAGTCTCGAGG 60.068 52.381 13.56 0.00 0.00 4.63
225 2907 2.349297 ACCAGCGTTTTAGTCTCGAG 57.651 50.000 5.93 5.93 0.00 4.04
227 2909 2.132762 ACAACCAGCGTTTTAGTCTCG 58.867 47.619 0.00 0.00 0.00 4.04
228 2910 4.986659 TCTAACAACCAGCGTTTTAGTCTC 59.013 41.667 0.00 0.00 31.54 3.36
229 2911 4.748600 GTCTAACAACCAGCGTTTTAGTCT 59.251 41.667 0.00 0.00 31.54 3.24
230 2912 4.748600 AGTCTAACAACCAGCGTTTTAGTC 59.251 41.667 0.00 0.00 31.54 2.59
231 2913 4.700700 AGTCTAACAACCAGCGTTTTAGT 58.299 39.130 0.00 0.00 31.54 2.24
232 2914 5.119743 GGTAGTCTAACAACCAGCGTTTTAG 59.880 44.000 0.00 0.00 33.28 1.85
233 2915 4.990426 GGTAGTCTAACAACCAGCGTTTTA 59.010 41.667 0.00 0.00 33.28 1.52
234 2916 3.811497 GGTAGTCTAACAACCAGCGTTTT 59.189 43.478 0.00 0.00 33.28 2.43
235 2917 3.396560 GGTAGTCTAACAACCAGCGTTT 58.603 45.455 0.00 0.00 33.28 3.60
236 2918 2.289257 GGGTAGTCTAACAACCAGCGTT 60.289 50.000 0.00 0.00 34.83 4.84
237 2919 1.274447 GGGTAGTCTAACAACCAGCGT 59.726 52.381 0.00 0.00 34.83 5.07
238 2920 1.274167 TGGGTAGTCTAACAACCAGCG 59.726 52.381 0.00 0.00 34.83 5.18
239 2921 2.038033 TGTGGGTAGTCTAACAACCAGC 59.962 50.000 0.00 0.00 34.83 4.85
240 2922 3.323979 ACTGTGGGTAGTCTAACAACCAG 59.676 47.826 0.00 3.63 34.83 4.00
241 2923 3.070446 CACTGTGGGTAGTCTAACAACCA 59.930 47.826 0.00 0.00 34.83 3.67
242 2924 3.556423 CCACTGTGGGTAGTCTAACAACC 60.556 52.174 19.23 0.00 32.67 3.77
243 2925 3.660865 CCACTGTGGGTAGTCTAACAAC 58.339 50.000 19.23 0.00 32.67 3.32
256 2938 2.904434 ACCTAAGTTACTCCCACTGTGG 59.096 50.000 20.01 20.01 37.25 4.17
257 2939 4.771054 ACTACCTAAGTTACTCCCACTGTG 59.229 45.833 0.00 0.00 33.35 3.66
258 2940 5.008165 ACTACCTAAGTTACTCCCACTGT 57.992 43.478 0.00 0.00 33.35 3.55
259 2941 6.435277 TGTTACTACCTAAGTTACTCCCACTG 59.565 42.308 0.00 0.00 38.33 3.66
260 2942 6.555711 TGTTACTACCTAAGTTACTCCCACT 58.444 40.000 0.00 0.00 38.33 4.00
261 2943 6.840780 TGTTACTACCTAAGTTACTCCCAC 57.159 41.667 0.00 0.00 38.33 4.61
262 2944 7.123247 GTGATGTTACTACCTAAGTTACTCCCA 59.877 40.741 0.00 0.00 38.33 4.37
263 2945 7.487484 GTGATGTTACTACCTAAGTTACTCCC 58.513 42.308 0.00 0.00 38.33 4.30
264 2946 7.192232 CGTGATGTTACTACCTAAGTTACTCC 58.808 42.308 0.00 0.00 38.33 3.85
265 2947 6.690528 GCGTGATGTTACTACCTAAGTTACTC 59.309 42.308 0.00 0.00 38.33 2.59
266 2948 6.151648 TGCGTGATGTTACTACCTAAGTTACT 59.848 38.462 0.00 0.00 38.33 2.24
267 2949 6.324819 TGCGTGATGTTACTACCTAAGTTAC 58.675 40.000 0.00 0.00 39.80 2.50
268 2950 6.513806 TGCGTGATGTTACTACCTAAGTTA 57.486 37.500 0.00 0.00 39.80 2.24
269 2951 5.395682 TGCGTGATGTTACTACCTAAGTT 57.604 39.130 0.00 0.00 39.80 2.66
270 2952 5.593679 ATGCGTGATGTTACTACCTAAGT 57.406 39.130 0.00 0.00 42.62 2.24
271 2953 7.594714 AGATATGCGTGATGTTACTACCTAAG 58.405 38.462 0.00 0.00 0.00 2.18
272 2954 7.520451 AGATATGCGTGATGTTACTACCTAA 57.480 36.000 0.00 0.00 0.00 2.69
273 2955 8.098912 TCTAGATATGCGTGATGTTACTACCTA 58.901 37.037 0.00 0.00 0.00 3.08
274 2956 6.940867 TCTAGATATGCGTGATGTTACTACCT 59.059 38.462 0.00 0.00 0.00 3.08
275 2957 7.142306 TCTAGATATGCGTGATGTTACTACC 57.858 40.000 0.00 0.00 0.00 3.18
294 2976 9.716531 CTTGCCACATCATCTATTTTATCTAGA 57.283 33.333 0.00 0.00 0.00 2.43
295 2977 8.449397 GCTTGCCACATCATCTATTTTATCTAG 58.551 37.037 0.00 0.00 0.00 2.43
296 2978 7.938490 TGCTTGCCACATCATCTATTTTATCTA 59.062 33.333 0.00 0.00 0.00 1.98
297 2979 6.774170 TGCTTGCCACATCATCTATTTTATCT 59.226 34.615 0.00 0.00 0.00 1.98
298 2980 6.973843 TGCTTGCCACATCATCTATTTTATC 58.026 36.000 0.00 0.00 0.00 1.75
299 2981 6.964807 TGCTTGCCACATCATCTATTTTAT 57.035 33.333 0.00 0.00 0.00 1.40
300 2982 6.772360 TTGCTTGCCACATCATCTATTTTA 57.228 33.333 0.00 0.00 0.00 1.52
301 2983 5.664294 TTGCTTGCCACATCATCTATTTT 57.336 34.783 0.00 0.00 0.00 1.82
302 2984 5.864418 ATTGCTTGCCACATCATCTATTT 57.136 34.783 0.00 0.00 0.00 1.40
303 2985 6.964807 TTATTGCTTGCCACATCATCTATT 57.035 33.333 0.00 0.00 0.00 1.73
304 2986 6.964807 TTTATTGCTTGCCACATCATCTAT 57.035 33.333 0.00 0.00 0.00 1.98
305 2987 6.546772 TCATTTATTGCTTGCCACATCATCTA 59.453 34.615 0.00 0.00 0.00 1.98
306 2988 5.361571 TCATTTATTGCTTGCCACATCATCT 59.638 36.000 0.00 0.00 0.00 2.90
307 2989 5.593968 TCATTTATTGCTTGCCACATCATC 58.406 37.500 0.00 0.00 0.00 2.92
308 2990 5.601583 TCATTTATTGCTTGCCACATCAT 57.398 34.783 0.00 0.00 0.00 2.45
309 2991 5.185442 TCTTCATTTATTGCTTGCCACATCA 59.815 36.000 0.00 0.00 0.00 3.07
310 2992 5.653507 TCTTCATTTATTGCTTGCCACATC 58.346 37.500 0.00 0.00 0.00 3.06
311 2993 5.419788 TCTCTTCATTTATTGCTTGCCACAT 59.580 36.000 0.00 0.00 0.00 3.21
312 2994 4.766373 TCTCTTCATTTATTGCTTGCCACA 59.234 37.500 0.00 0.00 0.00 4.17
313 2995 5.124457 TCTCTCTTCATTTATTGCTTGCCAC 59.876 40.000 0.00 0.00 0.00 5.01
314 2996 5.255687 TCTCTCTTCATTTATTGCTTGCCA 58.744 37.500 0.00 0.00 0.00 4.92
315 2997 5.587844 TCTCTCTCTTCATTTATTGCTTGCC 59.412 40.000 0.00 0.00 0.00 4.52
316 2998 6.238429 CCTCTCTCTCTTCATTTATTGCTTGC 60.238 42.308 0.00 0.00 0.00 4.01
317 2999 6.238429 GCCTCTCTCTCTTCATTTATTGCTTG 60.238 42.308 0.00 0.00 0.00 4.01
318 3000 5.821995 GCCTCTCTCTCTTCATTTATTGCTT 59.178 40.000 0.00 0.00 0.00 3.91
319 3001 5.104610 TGCCTCTCTCTCTTCATTTATTGCT 60.105 40.000 0.00 0.00 0.00 3.91
320 3002 5.121811 TGCCTCTCTCTCTTCATTTATTGC 58.878 41.667 0.00 0.00 0.00 3.56
321 3003 6.293516 GCATGCCTCTCTCTCTTCATTTATTG 60.294 42.308 6.36 0.00 0.00 1.90
322 3004 5.764192 GCATGCCTCTCTCTCTTCATTTATT 59.236 40.000 6.36 0.00 0.00 1.40
323 3005 5.307204 GCATGCCTCTCTCTCTTCATTTAT 58.693 41.667 6.36 0.00 0.00 1.40
324 3006 4.701765 GCATGCCTCTCTCTCTTCATTTA 58.298 43.478 6.36 0.00 0.00 1.40
325 3007 3.543665 GCATGCCTCTCTCTCTTCATTT 58.456 45.455 6.36 0.00 0.00 2.32
326 3008 2.483363 CGCATGCCTCTCTCTCTTCATT 60.483 50.000 13.15 0.00 0.00 2.57
327 3009 1.068895 CGCATGCCTCTCTCTCTTCAT 59.931 52.381 13.15 0.00 0.00 2.57
328 3010 0.459078 CGCATGCCTCTCTCTCTTCA 59.541 55.000 13.15 0.00 0.00 3.02
329 3011 0.249405 CCGCATGCCTCTCTCTCTTC 60.249 60.000 13.15 0.00 0.00 2.87
330 3012 0.975040 ACCGCATGCCTCTCTCTCTT 60.975 55.000 13.15 0.00 0.00 2.85
331 3013 0.106469 TACCGCATGCCTCTCTCTCT 60.106 55.000 13.15 0.00 0.00 3.10
332 3014 0.747255 TTACCGCATGCCTCTCTCTC 59.253 55.000 13.15 0.00 0.00 3.20
333 3015 0.461961 GTTACCGCATGCCTCTCTCT 59.538 55.000 13.15 0.00 0.00 3.10
334 3016 0.175760 TGTTACCGCATGCCTCTCTC 59.824 55.000 13.15 0.00 0.00 3.20
335 3017 0.833287 ATGTTACCGCATGCCTCTCT 59.167 50.000 13.15 0.00 0.00 3.10
336 3018 2.408050 CTATGTTACCGCATGCCTCTC 58.592 52.381 13.15 0.00 0.00 3.20
337 3019 1.541233 GCTATGTTACCGCATGCCTCT 60.541 52.381 13.15 0.00 0.00 3.69
338 3020 0.868406 GCTATGTTACCGCATGCCTC 59.132 55.000 13.15 0.00 0.00 4.70
339 3021 0.469917 AGCTATGTTACCGCATGCCT 59.530 50.000 13.15 0.00 0.00 4.75
340 3022 2.069273 CTAGCTATGTTACCGCATGCC 58.931 52.381 13.15 0.00 0.00 4.40
341 3023 2.755650 ACTAGCTATGTTACCGCATGC 58.244 47.619 7.91 7.91 0.00 4.06
342 3024 5.529791 AGTAACTAGCTATGTTACCGCATG 58.470 41.667 25.92 0.00 46.31 4.06
343 3025 5.786264 AGTAACTAGCTATGTTACCGCAT 57.214 39.130 25.92 14.84 46.31 4.73
344 3026 5.824624 ACTAGTAACTAGCTATGTTACCGCA 59.175 40.000 25.92 17.51 46.31 5.69
345 3027 6.311055 ACTAGTAACTAGCTATGTTACCGC 57.689 41.667 25.92 13.31 46.31 5.68
346 3028 8.600449 ACTACTAGTAACTAGCTATGTTACCG 57.400 38.462 25.92 21.98 46.31 4.02
362 3044 9.895138 TGTGTGATGTTACTCATACTACTAGTA 57.105 33.333 1.89 1.89 37.92 1.82
363 3045 8.803397 TGTGTGATGTTACTCATACTACTAGT 57.197 34.615 0.00 0.00 37.92 2.57
369 3051 9.755804 CTTGATATGTGTGATGTTACTCATACT 57.244 33.333 10.75 3.32 38.84 2.12
370 3052 8.982685 CCTTGATATGTGTGATGTTACTCATAC 58.017 37.037 0.00 5.35 38.84 2.39
371 3053 7.657354 GCCTTGATATGTGTGATGTTACTCATA 59.343 37.037 0.00 0.00 39.73 2.15
372 3054 6.484643 GCCTTGATATGTGTGATGTTACTCAT 59.515 38.462 0.00 0.00 38.11 2.90
373 3055 5.817296 GCCTTGATATGTGTGATGTTACTCA 59.183 40.000 0.00 0.00 0.00 3.41
374 3056 5.817296 TGCCTTGATATGTGTGATGTTACTC 59.183 40.000 0.00 0.00 0.00 2.59
375 3057 5.744171 TGCCTTGATATGTGTGATGTTACT 58.256 37.500 0.00 0.00 0.00 2.24
376 3058 6.316140 TCTTGCCTTGATATGTGTGATGTTAC 59.684 38.462 0.00 0.00 0.00 2.50
377 3059 6.413892 TCTTGCCTTGATATGTGTGATGTTA 58.586 36.000 0.00 0.00 0.00 2.41
378 3060 5.255687 TCTTGCCTTGATATGTGTGATGTT 58.744 37.500 0.00 0.00 0.00 2.71
379 3061 4.847198 TCTTGCCTTGATATGTGTGATGT 58.153 39.130 0.00 0.00 0.00 3.06
380 3062 5.529800 TCATCTTGCCTTGATATGTGTGATG 59.470 40.000 0.00 0.00 0.00 3.07
381 3063 5.687780 TCATCTTGCCTTGATATGTGTGAT 58.312 37.500 0.00 0.00 0.00 3.06
382 3064 5.101648 TCATCTTGCCTTGATATGTGTGA 57.898 39.130 0.00 0.00 0.00 3.58
383 3065 4.880120 ACTCATCTTGCCTTGATATGTGTG 59.120 41.667 0.00 0.00 0.00 3.82
384 3066 5.104610 AGACTCATCTTGCCTTGATATGTGT 60.105 40.000 0.00 0.00 0.00 3.72
385 3067 5.366460 AGACTCATCTTGCCTTGATATGTG 58.634 41.667 0.00 0.00 0.00 3.21
386 3068 5.627182 AGACTCATCTTGCCTTGATATGT 57.373 39.130 0.00 0.00 0.00 2.29
387 3069 8.530311 ACTATAGACTCATCTTGCCTTGATATG 58.470 37.037 6.78 0.00 36.29 1.78
388 3070 8.663209 ACTATAGACTCATCTTGCCTTGATAT 57.337 34.615 6.78 0.00 36.29 1.63
389 3071 7.947332 AGACTATAGACTCATCTTGCCTTGATA 59.053 37.037 6.78 0.00 36.29 2.15
390 3072 6.782000 AGACTATAGACTCATCTTGCCTTGAT 59.218 38.462 6.78 0.00 36.29 2.57
391 3073 6.132658 AGACTATAGACTCATCTTGCCTTGA 58.867 40.000 6.78 0.00 36.29 3.02
392 3074 6.403866 AGACTATAGACTCATCTTGCCTTG 57.596 41.667 6.78 0.00 36.29 3.61
393 3075 8.719645 ATTAGACTATAGACTCATCTTGCCTT 57.280 34.615 6.78 0.00 36.29 4.35
394 3076 9.815306 TTATTAGACTATAGACTCATCTTGCCT 57.185 33.333 6.78 0.00 36.29 4.75
410 3092 9.448438 ACATGCAACACTTCATTTATTAGACTA 57.552 29.630 0.00 0.00 0.00 2.59
411 3093 8.340618 ACATGCAACACTTCATTTATTAGACT 57.659 30.769 0.00 0.00 0.00 3.24
412 3094 8.970691 AACATGCAACACTTCATTTATTAGAC 57.029 30.769 0.00 0.00 0.00 2.59
414 3096 9.289303 GGTAACATGCAACACTTCATTTATTAG 57.711 33.333 0.00 0.00 0.00 1.73
415 3097 8.797438 TGGTAACATGCAACACTTCATTTATTA 58.203 29.630 0.00 0.00 46.17 0.98
416 3098 7.665690 TGGTAACATGCAACACTTCATTTATT 58.334 30.769 0.00 0.00 46.17 1.40
417 3099 7.225784 TGGTAACATGCAACACTTCATTTAT 57.774 32.000 0.00 0.00 46.17 1.40
418 3100 6.641169 TGGTAACATGCAACACTTCATTTA 57.359 33.333 0.00 0.00 46.17 1.40
419 3101 5.528043 TGGTAACATGCAACACTTCATTT 57.472 34.783 0.00 0.00 46.17 2.32
435 3117 8.639761 AGTGAGGAGTAACATATATGTGGTAAC 58.360 37.037 18.94 13.91 41.61 2.50
436 3118 8.777578 AGTGAGGAGTAACATATATGTGGTAA 57.222 34.615 18.94 3.13 41.61 2.85
438 3120 8.958060 ATAGTGAGGAGTAACATATATGTGGT 57.042 34.615 18.94 7.17 41.61 4.16
487 3169 7.851114 CCACAATGGGTAGTAACATGTCTATGT 60.851 40.741 0.00 0.00 40.63 2.29
488 3170 6.483307 CCACAATGGGTAGTAACATGTCTATG 59.517 42.308 0.00 0.00 35.62 2.23
489 3171 6.591935 CCACAATGGGTAGTAACATGTCTAT 58.408 40.000 0.00 0.00 32.67 1.98
490 3172 5.628200 GCCACAATGGGTAGTAACATGTCTA 60.628 44.000 0.00 0.00 38.19 2.59
491 3173 4.843728 CCACAATGGGTAGTAACATGTCT 58.156 43.478 0.00 0.00 32.67 3.41
492 3174 3.377172 GCCACAATGGGTAGTAACATGTC 59.623 47.826 0.00 0.00 38.19 3.06
493 3175 3.352648 GCCACAATGGGTAGTAACATGT 58.647 45.455 0.00 0.00 38.19 3.21
504 3186 2.565841 GCTAAGACTAGCCACAATGGG 58.434 52.381 0.00 0.00 44.22 4.00
514 3196 5.533154 AGCCACACATACTAGCTAAGACTAG 59.467 44.000 0.00 0.00 44.38 2.57
515 3197 5.446860 AGCCACACATACTAGCTAAGACTA 58.553 41.667 0.00 0.00 30.46 2.59
516 3198 4.282496 AGCCACACATACTAGCTAAGACT 58.718 43.478 0.00 0.00 30.46 3.24
517 3199 4.339814 AGAGCCACACATACTAGCTAAGAC 59.660 45.833 0.00 0.00 32.97 3.01
518 3200 4.537751 AGAGCCACACATACTAGCTAAGA 58.462 43.478 0.00 0.00 32.97 2.10
519 3201 4.261825 GGAGAGCCACACATACTAGCTAAG 60.262 50.000 0.00 0.00 32.97 2.18
520 3202 3.637229 GGAGAGCCACACATACTAGCTAA 59.363 47.826 0.00 0.00 32.97 3.09
521 3203 3.223435 GGAGAGCCACACATACTAGCTA 58.777 50.000 0.00 0.00 32.97 3.32
522 3204 2.035632 GGAGAGCCACACATACTAGCT 58.964 52.381 0.00 0.00 36.25 3.32
523 3205 1.069358 GGGAGAGCCACACATACTAGC 59.931 57.143 0.00 0.00 35.15 3.42
524 3206 1.338337 CGGGAGAGCCACACATACTAG 59.662 57.143 0.00 0.00 35.15 2.57
525 3207 1.341679 ACGGGAGAGCCACACATACTA 60.342 52.381 0.00 0.00 35.15 1.82
526 3208 0.614979 ACGGGAGAGCCACACATACT 60.615 55.000 0.00 0.00 35.15 2.12
527 3209 0.249398 AACGGGAGAGCCACACATAC 59.751 55.000 0.00 0.00 35.15 2.39
583 3291 4.588528 ACAAAAGCTCAGAAGTCTCTCTCT 59.411 41.667 0.00 0.00 0.00 3.10
584 3292 4.881920 ACAAAAGCTCAGAAGTCTCTCTC 58.118 43.478 0.00 0.00 0.00 3.20
585 3293 4.558496 CGACAAAAGCTCAGAAGTCTCTCT 60.558 45.833 0.00 0.00 0.00 3.10
587 3295 3.068873 ACGACAAAAGCTCAGAAGTCTCT 59.931 43.478 0.00 0.00 0.00 3.10
589 3297 3.126831 CACGACAAAAGCTCAGAAGTCT 58.873 45.455 0.00 0.00 0.00 3.24
592 3300 2.032549 CACCACGACAAAAGCTCAGAAG 60.033 50.000 0.00 0.00 0.00 2.85
593 3301 1.939934 CACCACGACAAAAGCTCAGAA 59.060 47.619 0.00 0.00 0.00 3.02
595 3303 1.581934 TCACCACGACAAAAGCTCAG 58.418 50.000 0.00 0.00 0.00 3.35
597 3305 3.414549 TTTTCACCACGACAAAAGCTC 57.585 42.857 0.00 0.00 0.00 4.09
599 3307 5.516090 TCTTATTTTCACCACGACAAAAGC 58.484 37.500 0.00 0.00 0.00 3.51
600 3308 7.167468 CCTTTCTTATTTTCACCACGACAAAAG 59.833 37.037 0.00 0.00 0.00 2.27
602 3310 6.319152 TCCTTTCTTATTTTCACCACGACAAA 59.681 34.615 0.00 0.00 0.00 2.83
603 3311 5.823570 TCCTTTCTTATTTTCACCACGACAA 59.176 36.000 0.00 0.00 0.00 3.18
604 3312 5.369833 TCCTTTCTTATTTTCACCACGACA 58.630 37.500 0.00 0.00 0.00 4.35
605 3313 5.934935 TCCTTTCTTATTTTCACCACGAC 57.065 39.130 0.00 0.00 0.00 4.34
606 3314 6.544564 ACTTTCCTTTCTTATTTTCACCACGA 59.455 34.615 0.00 0.00 0.00 4.35
607 3315 6.735130 ACTTTCCTTTCTTATTTTCACCACG 58.265 36.000 0.00 0.00 0.00 4.94
608 3316 8.942338 AAACTTTCCTTTCTTATTTTCACCAC 57.058 30.769 0.00 0.00 0.00 4.16
610 3318 9.472361 GGTAAACTTTCCTTTCTTATTTTCACC 57.528 33.333 0.00 0.00 0.00 4.02
617 3325 7.232737 CACCCAAGGTAAACTTTCCTTTCTTAT 59.767 37.037 0.00 0.00 41.44 1.73
619 3327 5.362717 CACCCAAGGTAAACTTTCCTTTCTT 59.637 40.000 0.00 0.00 41.44 2.52
620 3328 4.893524 CACCCAAGGTAAACTTTCCTTTCT 59.106 41.667 0.00 0.00 41.44 2.52
621 3329 4.038763 CCACCCAAGGTAAACTTTCCTTTC 59.961 45.833 0.00 0.00 41.44 2.62
623 3331 3.572642 CCACCCAAGGTAAACTTTCCTT 58.427 45.455 0.00 0.00 43.79 3.36
624 3332 2.158370 CCCACCCAAGGTAAACTTTCCT 60.158 50.000 0.00 0.00 37.29 3.36
625 3333 2.244695 CCCACCCAAGGTAAACTTTCC 58.755 52.381 0.00 0.00 37.29 3.13
626 3334 2.626266 CACCCACCCAAGGTAAACTTTC 59.374 50.000 0.00 0.00 37.29 2.62
627 3335 2.023791 ACACCCACCCAAGGTAAACTTT 60.024 45.455 0.00 0.00 37.29 2.66
628 3336 1.571936 ACACCCACCCAAGGTAAACTT 59.428 47.619 0.00 0.00 41.00 2.66
629 3337 1.228190 ACACCCACCCAAGGTAAACT 58.772 50.000 0.00 0.00 35.24 2.66
631 3339 3.658705 AGATAACACCCACCCAAGGTAAA 59.341 43.478 0.00 0.00 35.24 2.01
632 3340 3.009695 CAGATAACACCCACCCAAGGTAA 59.990 47.826 0.00 0.00 35.24 2.85
633 3341 2.574369 CAGATAACACCCACCCAAGGTA 59.426 50.000 0.00 0.00 35.24 3.08
634 3342 1.354368 CAGATAACACCCACCCAAGGT 59.646 52.381 0.00 0.00 38.48 3.50
635 3343 1.340991 CCAGATAACACCCACCCAAGG 60.341 57.143 0.00 0.00 0.00 3.61
636 3344 1.955208 GCCAGATAACACCCACCCAAG 60.955 57.143 0.00 0.00 0.00 3.61
637 3345 0.039035 GCCAGATAACACCCACCCAA 59.961 55.000 0.00 0.00 0.00 4.12
639 3347 1.451387 CGCCAGATAACACCCACCC 60.451 63.158 0.00 0.00 0.00 4.61
640 3348 0.538118 TACGCCAGATAACACCCACC 59.462 55.000 0.00 0.00 0.00 4.61
641 3349 1.479323 TCTACGCCAGATAACACCCAC 59.521 52.381 0.00 0.00 0.00 4.61
642 3350 1.855295 TCTACGCCAGATAACACCCA 58.145 50.000 0.00 0.00 0.00 4.51
643 3351 3.056749 CCTATCTACGCCAGATAACACCC 60.057 52.174 8.28 0.00 44.04 4.61
644 3352 3.056749 CCCTATCTACGCCAGATAACACC 60.057 52.174 8.28 0.00 44.04 4.16
645 3353 3.056749 CCCCTATCTACGCCAGATAACAC 60.057 52.174 8.28 0.00 44.04 3.32
646 3354 3.162666 CCCCTATCTACGCCAGATAACA 58.837 50.000 8.28 0.00 44.04 2.41
647 3355 2.094130 GCCCCTATCTACGCCAGATAAC 60.094 54.545 8.28 0.00 44.04 1.89
648 3356 2.176889 GCCCCTATCTACGCCAGATAA 58.823 52.381 8.28 0.00 44.04 1.75
649 3357 1.076513 TGCCCCTATCTACGCCAGATA 59.923 52.381 7.04 7.04 42.49 1.98
650 3358 0.178932 TGCCCCTATCTACGCCAGAT 60.179 55.000 5.54 5.54 46.19 2.90
654 3362 1.367840 CTGTGCCCCTATCTACGCC 59.632 63.158 0.00 0.00 0.00 5.68
655 3363 1.301009 GCTGTGCCCCTATCTACGC 60.301 63.158 0.00 0.00 0.00 4.42
656 3364 1.367840 GGCTGTGCCCCTATCTACG 59.632 63.158 0.00 0.00 44.06 3.51
667 3375 1.135286 GTTATTTCAGGCTGGCTGTGC 60.135 52.381 27.51 11.02 0.00 4.57
668 3376 1.474077 GGTTATTTCAGGCTGGCTGTG 59.526 52.381 27.51 7.58 0.00 3.66
669 3377 1.075374 TGGTTATTTCAGGCTGGCTGT 59.925 47.619 27.51 13.60 0.00 4.40
670 3378 1.474077 GTGGTTATTTCAGGCTGGCTG 59.526 52.381 23.83 23.83 0.00 4.85
671 3379 1.075374 TGTGGTTATTTCAGGCTGGCT 59.925 47.619 15.73 0.00 0.00 4.75
673 3381 1.474077 GCTGTGGTTATTTCAGGCTGG 59.526 52.381 15.73 0.00 0.00 4.85
676 3384 2.162681 ACTGCTGTGGTTATTTCAGGC 58.837 47.619 0.00 0.00 0.00 4.85
677 3385 5.240623 TGTTTACTGCTGTGGTTATTTCAGG 59.759 40.000 6.48 0.00 0.00 3.86
678 3386 6.312399 TGTTTACTGCTGTGGTTATTTCAG 57.688 37.500 6.48 0.00 0.00 3.02
679 3387 6.892658 ATGTTTACTGCTGTGGTTATTTCA 57.107 33.333 6.48 0.00 0.00 2.69
680 3388 7.593825 AGAATGTTTACTGCTGTGGTTATTTC 58.406 34.615 6.48 3.42 0.00 2.17
681 3389 7.448469 AGAGAATGTTTACTGCTGTGGTTATTT 59.552 33.333 6.48 0.00 0.00 1.40
682 3390 6.942576 AGAGAATGTTTACTGCTGTGGTTATT 59.057 34.615 6.48 2.72 0.00 1.40
684 3392 5.865085 AGAGAATGTTTACTGCTGTGGTTA 58.135 37.500 6.48 0.00 0.00 2.85
686 3394 4.357918 AGAGAATGTTTACTGCTGTGGT 57.642 40.909 6.48 0.00 0.00 4.16
687 3395 6.257411 CAGATAGAGAATGTTTACTGCTGTGG 59.743 42.308 6.48 0.00 0.00 4.17
689 3397 7.175347 TCAGATAGAGAATGTTTACTGCTGT 57.825 36.000 0.66 0.66 0.00 4.40
758 3738 4.408396 TCTAGGAAGGGGCGGCCA 62.408 66.667 30.95 6.84 0.00 5.36
832 3812 5.869753 AGCTTCTGTACTGTTTAATGCTG 57.130 39.130 0.00 0.00 0.00 4.41
944 3924 9.436957 CTTCCAAGCTACTATTCTTTTACAGAA 57.563 33.333 0.00 0.00 46.01 3.02
1024 4004 2.376808 ACGAGAAGGATCTTGCACAG 57.623 50.000 0.00 0.00 40.28 3.66
1099 4079 4.943705 GGTTCAAGTTATGCAGGAATCTCA 59.056 41.667 0.00 0.00 0.00 3.27
1149 4129 2.749621 CTGGAAACACTTAGCCATGTCC 59.250 50.000 0.00 0.00 35.60 4.02
1201 4181 0.097674 GTGAGCATTCACGCCATCAC 59.902 55.000 0.00 0.00 43.84 3.06
1230 4210 3.254060 GTCTCTTGCATCTACAAGCGAA 58.746 45.455 0.00 0.00 45.43 4.70
1471 4456 9.585369 TCATGTGAATATATTCCAAAATGCCTA 57.415 29.630 20.29 0.00 35.97 3.93
1515 4500 3.148279 GAGGGTCGGCGATGGACT 61.148 66.667 14.79 9.13 34.82 3.85
1521 4506 4.367023 CGGTTTGAGGGTCGGCGA 62.367 66.667 4.99 4.99 0.00 5.54
1566 4551 4.162690 GGATGGCTTCCGCGGTCT 62.163 66.667 27.15 4.25 33.93 3.85
1605 4590 4.430765 GCATCCGGACCACGTCGT 62.431 66.667 6.12 0.00 42.24 4.34
1620 4605 2.547211 CCAATTTGCGGTTGAAAATGCA 59.453 40.909 0.00 0.00 38.10 3.96
1678 4664 3.852536 GTGTCGTACTTCTATGTGTCTGC 59.147 47.826 0.00 0.00 0.00 4.26
1924 4914 1.006102 GCCATGGGGTCGTCGATAG 60.006 63.158 15.13 0.00 36.17 2.08
2007 5000 5.578005 TCACCATCCTTCGTACTCTAAAG 57.422 43.478 0.00 0.00 0.00 1.85
2170 5165 5.217978 AGCTCTTTCAAATTGATTTGGCA 57.782 34.783 14.53 0.00 45.39 4.92
2196 5191 1.071471 CTGTTGGCCGTCCTCACTT 59.929 57.895 0.00 0.00 0.00 3.16
2197 5192 2.743718 CTGTTGGCCGTCCTCACT 59.256 61.111 0.00 0.00 0.00 3.41
2250 5245 0.886490 GATAGCGGGCCATGTTGAGG 60.886 60.000 4.39 0.00 0.00 3.86
2252 5247 1.227527 CGATAGCGGGCCATGTTGA 60.228 57.895 4.39 0.00 0.00 3.18
2266 5261 5.458015 CGTTGTCCATATAGTCAAGCGATA 58.542 41.667 0.00 0.00 0.00 2.92
2279 5274 1.003112 GTGGTGGCCGTTGTCCATA 60.003 57.895 0.00 0.00 35.81 2.74
2291 5286 3.624410 CACATATCATGAGTGTGTGGTGG 59.376 47.826 24.98 8.33 38.66 4.61
2298 5293 6.097412 TGCTTAGTCTCACATATCATGAGTGT 59.903 38.462 11.94 10.97 43.47 3.55
2314 5309 9.624373 ATCATTCATCTTTGTAATGCTTAGTCT 57.376 29.630 0.00 0.00 31.98 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.