Multiple sequence alignment - TraesCS3D01G080700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G080700 chr3D 100.000 2731 0 0 1 2731 40731945 40729215 0.000000e+00 5044.0
1 TraesCS3D01G080700 chr3D 93.403 864 34 9 1891 2731 278975566 278974703 0.000000e+00 1258.0
2 TraesCS3D01G080700 chr3D 92.940 864 36 9 1889 2731 565682459 565683318 0.000000e+00 1234.0
3 TraesCS3D01G080700 chr3D 92.725 866 35 12 1893 2731 403341320 403340456 0.000000e+00 1225.0
4 TraesCS3D01G080700 chr3D 100.000 28 0 0 183 210 571524935 571524962 5.000000e-03 52.8
5 TraesCS3D01G080700 chr3B 94.277 1258 59 8 637 1892 64243613 64242367 0.000000e+00 1912.0
6 TraesCS3D01G080700 chr3A 88.953 1213 75 30 590 1772 52376825 52375642 0.000000e+00 1443.0
7 TraesCS3D01G080700 chr3A 81.308 107 7 3 290 395 52377138 52377044 1.050000e-09 75.0
8 TraesCS3D01G080700 chr1D 94.077 861 24 10 1891 2731 438222031 438222884 0.000000e+00 1282.0
9 TraesCS3D01G080700 chr1D 88.991 872 35 13 1887 2731 490425588 490426425 0.000000e+00 1022.0
10 TraesCS3D01G080700 chr1D 88.571 70 4 1 219 284 228806398 228806329 6.270000e-12 82.4
11 TraesCS3D01G080700 chr5D 93.678 870 32 10 1884 2731 412945780 412944912 0.000000e+00 1280.0
12 TraesCS3D01G080700 chr5D 92.972 868 36 9 1889 2731 59206276 59207143 0.000000e+00 1242.0
13 TraesCS3D01G080700 chr5D 93.056 864 35 12 1891 2731 76978740 76979601 0.000000e+00 1240.0
14 TraesCS3D01G080700 chr5D 92.644 870 39 10 1887 2731 55699929 55699060 0.000000e+00 1229.0
15 TraesCS3D01G080700 chr5D 92.154 599 27 9 2152 2731 229139660 229139063 0.000000e+00 828.0
16 TraesCS3D01G080700 chr6D 93.380 861 37 7 1891 2731 386218796 386219656 0.000000e+00 1256.0
17 TraesCS3D01G080700 chr6D 86.250 80 5 3 211 284 29145578 29145657 6.270000e-12 82.4
18 TraesCS3D01G080700 chr7A 91.395 860 49 17 1891 2731 723281647 723282500 0.000000e+00 1155.0
19 TraesCS3D01G080700 chr7B 85.643 801 76 20 783 1555 14909517 14910306 0.000000e+00 806.0
20 TraesCS3D01G080700 chr1A 97.561 41 1 0 244 284 296923110 296923070 1.360000e-08 71.3
21 TraesCS3D01G080700 chr2B 95.238 42 2 0 244 285 646214083 646214124 1.760000e-07 67.6
22 TraesCS3D01G080700 chr6B 97.222 36 1 0 250 285 63976903 63976868 8.170000e-06 62.1
23 TraesCS3D01G080700 chr2A 90.244 41 4 0 251 291 149391098 149391138 1.000000e-03 54.7
24 TraesCS3D01G080700 chr6A 96.774 31 1 0 255 285 9502841 9502871 5.000000e-03 52.8
25 TraesCS3D01G080700 chr4A 100.000 28 0 0 258 285 115565566 115565539 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G080700 chr3D 40729215 40731945 2730 True 5044 5044 100.0000 1 2731 1 chr3D.!!$R1 2730
1 TraesCS3D01G080700 chr3D 278974703 278975566 863 True 1258 1258 93.4030 1891 2731 1 chr3D.!!$R2 840
2 TraesCS3D01G080700 chr3D 565682459 565683318 859 False 1234 1234 92.9400 1889 2731 1 chr3D.!!$F1 842
3 TraesCS3D01G080700 chr3D 403340456 403341320 864 True 1225 1225 92.7250 1893 2731 1 chr3D.!!$R3 838
4 TraesCS3D01G080700 chr3B 64242367 64243613 1246 True 1912 1912 94.2770 637 1892 1 chr3B.!!$R1 1255
5 TraesCS3D01G080700 chr3A 52375642 52377138 1496 True 759 1443 85.1305 290 1772 2 chr3A.!!$R1 1482
6 TraesCS3D01G080700 chr1D 438222031 438222884 853 False 1282 1282 94.0770 1891 2731 1 chr1D.!!$F1 840
7 TraesCS3D01G080700 chr1D 490425588 490426425 837 False 1022 1022 88.9910 1887 2731 1 chr1D.!!$F2 844
8 TraesCS3D01G080700 chr5D 412944912 412945780 868 True 1280 1280 93.6780 1884 2731 1 chr5D.!!$R3 847
9 TraesCS3D01G080700 chr5D 59206276 59207143 867 False 1242 1242 92.9720 1889 2731 1 chr5D.!!$F1 842
10 TraesCS3D01G080700 chr5D 76978740 76979601 861 False 1240 1240 93.0560 1891 2731 1 chr5D.!!$F2 840
11 TraesCS3D01G080700 chr5D 55699060 55699929 869 True 1229 1229 92.6440 1887 2731 1 chr5D.!!$R1 844
12 TraesCS3D01G080700 chr5D 229139063 229139660 597 True 828 828 92.1540 2152 2731 1 chr5D.!!$R2 579
13 TraesCS3D01G080700 chr6D 386218796 386219656 860 False 1256 1256 93.3800 1891 2731 1 chr6D.!!$F2 840
14 TraesCS3D01G080700 chr7A 723281647 723282500 853 False 1155 1155 91.3950 1891 2731 1 chr7A.!!$F1 840
15 TraesCS3D01G080700 chr7B 14909517 14910306 789 False 806 806 85.6430 783 1555 1 chr7B.!!$F1 772

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
286 287 0.033796 TCCGAACGGAGGGAGTATGT 60.034 55.0 12.04 0.0 39.76 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1788 1910 1.569479 GCGGGACAGCAGTTCTGAAC 61.569 60.0 12.54 12.54 45.72 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.812358 ATTTCTTTGCGGGGAACAAC 57.188 45.000 0.00 0.00 0.00 3.32
20 21 1.475403 TTTCTTTGCGGGGAACAACA 58.525 45.000 0.00 0.00 0.00 3.33
21 22 1.698506 TTCTTTGCGGGGAACAACAT 58.301 45.000 0.00 0.00 0.00 2.71
22 23 0.958091 TCTTTGCGGGGAACAACATG 59.042 50.000 0.00 0.00 0.00 3.21
23 24 0.958091 CTTTGCGGGGAACAACATGA 59.042 50.000 0.00 0.00 0.00 3.07
24 25 1.339610 CTTTGCGGGGAACAACATGAA 59.660 47.619 0.00 0.00 0.00 2.57
25 26 1.626686 TTGCGGGGAACAACATGAAT 58.373 45.000 0.00 0.00 0.00 2.57
26 27 0.887247 TGCGGGGAACAACATGAATG 59.113 50.000 0.00 0.09 0.00 2.67
27 28 0.887933 GCGGGGAACAACATGAATGT 59.112 50.000 0.00 0.82 44.20 2.71
28 29 2.088423 GCGGGGAACAACATGAATGTA 58.912 47.619 0.00 0.00 40.80 2.29
29 30 2.097466 GCGGGGAACAACATGAATGTAG 59.903 50.000 0.00 0.00 40.80 2.74
30 31 3.343617 CGGGGAACAACATGAATGTAGT 58.656 45.455 0.00 0.00 40.80 2.73
31 32 3.756434 CGGGGAACAACATGAATGTAGTT 59.244 43.478 0.00 0.00 40.80 2.24
32 33 4.938832 CGGGGAACAACATGAATGTAGTTA 59.061 41.667 0.00 0.00 40.80 2.24
33 34 5.413213 CGGGGAACAACATGAATGTAGTTAA 59.587 40.000 0.00 0.00 40.80 2.01
34 35 6.072397 CGGGGAACAACATGAATGTAGTTAAA 60.072 38.462 0.00 0.00 40.80 1.52
35 36 7.312899 GGGGAACAACATGAATGTAGTTAAAG 58.687 38.462 0.00 0.00 40.80 1.85
36 37 7.175990 GGGGAACAACATGAATGTAGTTAAAGA 59.824 37.037 0.00 0.00 40.80 2.52
37 38 8.573035 GGGAACAACATGAATGTAGTTAAAGAA 58.427 33.333 0.00 0.00 40.80 2.52
38 39 9.394477 GGAACAACATGAATGTAGTTAAAGAAC 57.606 33.333 0.00 0.00 40.80 3.01
39 40 9.944663 GAACAACATGAATGTAGTTAAAGAACA 57.055 29.630 0.00 0.00 40.80 3.18
40 41 9.950680 AACAACATGAATGTAGTTAAAGAACAG 57.049 29.630 0.00 0.00 40.80 3.16
41 42 8.567948 ACAACATGAATGTAGTTAAAGAACAGG 58.432 33.333 0.00 0.00 40.80 4.00
42 43 8.783093 CAACATGAATGTAGTTAAAGAACAGGA 58.217 33.333 0.00 0.00 40.80 3.86
43 44 8.918202 ACATGAATGTAGTTAAAGAACAGGAA 57.082 30.769 0.00 0.00 39.68 3.36
44 45 9.349713 ACATGAATGTAGTTAAAGAACAGGAAA 57.650 29.630 0.00 0.00 39.68 3.13
67 68 6.718454 AAAAGATGACTTCGACTTCTCATG 57.282 37.500 0.00 0.00 35.05 3.07
68 69 5.398603 AAGATGACTTCGACTTCTCATGT 57.601 39.130 0.00 0.00 0.00 3.21
69 70 4.742417 AGATGACTTCGACTTCTCATGTG 58.258 43.478 0.00 0.00 0.00 3.21
70 71 4.460731 AGATGACTTCGACTTCTCATGTGA 59.539 41.667 0.00 0.00 0.00 3.58
71 72 4.584327 TGACTTCGACTTCTCATGTGAA 57.416 40.909 9.68 9.68 0.00 3.18
72 73 4.944048 TGACTTCGACTTCTCATGTGAAA 58.056 39.130 11.11 0.00 0.00 2.69
73 74 5.356426 TGACTTCGACTTCTCATGTGAAAA 58.644 37.500 11.11 2.72 0.00 2.29
74 75 5.463392 TGACTTCGACTTCTCATGTGAAAAG 59.537 40.000 11.11 12.78 0.00 2.27
75 76 5.360591 ACTTCGACTTCTCATGTGAAAAGT 58.639 37.500 14.90 14.90 34.78 2.66
76 77 6.513180 ACTTCGACTTCTCATGTGAAAAGTA 58.487 36.000 17.45 5.30 32.34 2.24
77 78 7.155328 ACTTCGACTTCTCATGTGAAAAGTAT 58.845 34.615 17.45 2.29 32.34 2.12
78 79 7.329717 ACTTCGACTTCTCATGTGAAAAGTATC 59.670 37.037 17.45 8.40 32.34 2.24
79 80 6.687604 TCGACTTCTCATGTGAAAAGTATCA 58.312 36.000 11.11 0.00 32.34 2.15
80 81 7.323420 TCGACTTCTCATGTGAAAAGTATCAT 58.677 34.615 11.11 0.00 32.34 2.45
81 82 7.276438 TCGACTTCTCATGTGAAAAGTATCATG 59.724 37.037 11.11 0.00 38.96 3.07
82 83 7.465111 CGACTTCTCATGTGAAAAGTATCATGG 60.465 40.741 11.11 0.00 38.39 3.66
83 84 6.094603 ACTTCTCATGTGAAAAGTATCATGGC 59.905 38.462 11.11 0.00 38.39 4.40
84 85 4.571984 TCTCATGTGAAAAGTATCATGGCG 59.428 41.667 0.00 0.00 38.39 5.69
85 86 4.260985 TCATGTGAAAAGTATCATGGCGT 58.739 39.130 0.00 0.00 38.39 5.68
86 87 4.094739 TCATGTGAAAAGTATCATGGCGTG 59.905 41.667 0.00 0.00 38.39 5.34
87 88 3.407698 TGTGAAAAGTATCATGGCGTGT 58.592 40.909 6.60 0.00 0.00 4.49
88 89 3.435327 TGTGAAAAGTATCATGGCGTGTC 59.565 43.478 6.60 0.00 0.00 3.67
89 90 3.435327 GTGAAAAGTATCATGGCGTGTCA 59.565 43.478 6.60 0.00 0.00 3.58
90 91 4.068599 TGAAAAGTATCATGGCGTGTCAA 58.931 39.130 6.60 0.00 0.00 3.18
91 92 4.083537 TGAAAAGTATCATGGCGTGTCAAC 60.084 41.667 6.60 3.95 0.00 3.18
92 93 2.024176 AGTATCATGGCGTGTCAACC 57.976 50.000 6.60 0.00 0.00 3.77
93 94 1.555075 AGTATCATGGCGTGTCAACCT 59.445 47.619 6.60 0.00 0.00 3.50
94 95 1.665679 GTATCATGGCGTGTCAACCTG 59.334 52.381 6.60 0.00 0.00 4.00
95 96 0.036732 ATCATGGCGTGTCAACCTGT 59.963 50.000 6.60 0.00 0.00 4.00
96 97 0.884259 TCATGGCGTGTCAACCTGTG 60.884 55.000 6.60 0.00 0.00 3.66
97 98 2.260869 ATGGCGTGTCAACCTGTGC 61.261 57.895 0.00 0.00 0.00 4.57
98 99 2.899838 GGCGTGTCAACCTGTGCA 60.900 61.111 0.00 0.00 0.00 4.57
99 100 2.477176 GGCGTGTCAACCTGTGCAA 61.477 57.895 0.00 0.00 0.00 4.08
100 101 1.431440 GCGTGTCAACCTGTGCAAA 59.569 52.632 0.00 0.00 0.00 3.68
101 102 0.592247 GCGTGTCAACCTGTGCAAAG 60.592 55.000 0.00 0.00 0.00 2.77
102 103 0.732571 CGTGTCAACCTGTGCAAAGT 59.267 50.000 2.51 0.00 0.00 2.66
103 104 1.937223 CGTGTCAACCTGTGCAAAGTA 59.063 47.619 2.51 0.00 0.00 2.24
104 105 2.548057 CGTGTCAACCTGTGCAAAGTAT 59.452 45.455 2.51 0.00 0.00 2.12
105 106 3.003275 CGTGTCAACCTGTGCAAAGTATT 59.997 43.478 2.51 0.00 0.00 1.89
106 107 4.497340 CGTGTCAACCTGTGCAAAGTATTT 60.497 41.667 2.51 0.00 40.26 1.40
107 108 4.976116 GTGTCAACCTGTGCAAAGTATTTC 59.024 41.667 2.51 0.00 35.03 2.17
108 109 4.642437 TGTCAACCTGTGCAAAGTATTTCA 59.358 37.500 2.51 0.00 35.03 2.69
109 110 5.126222 TGTCAACCTGTGCAAAGTATTTCAA 59.874 36.000 2.51 0.00 35.03 2.69
110 111 6.039616 GTCAACCTGTGCAAAGTATTTCAAA 58.960 36.000 2.51 0.00 35.03 2.69
111 112 6.533367 GTCAACCTGTGCAAAGTATTTCAAAA 59.467 34.615 2.51 0.00 35.03 2.44
112 113 7.064016 GTCAACCTGTGCAAAGTATTTCAAAAA 59.936 33.333 2.51 0.00 35.03 1.94
113 114 7.768120 TCAACCTGTGCAAAGTATTTCAAAAAT 59.232 29.630 2.51 0.00 35.03 1.82
114 115 7.713764 ACCTGTGCAAAGTATTTCAAAAATC 57.286 32.000 2.51 0.00 35.03 2.17
115 116 7.271511 ACCTGTGCAAAGTATTTCAAAAATCA 58.728 30.769 2.51 0.00 35.03 2.57
116 117 7.933033 ACCTGTGCAAAGTATTTCAAAAATCAT 59.067 29.630 2.51 0.00 35.03 2.45
117 118 8.776470 CCTGTGCAAAGTATTTCAAAAATCATT 58.224 29.630 2.51 0.00 35.03 2.57
118 119 9.801714 CTGTGCAAAGTATTTCAAAAATCATTC 57.198 29.630 0.00 0.00 35.03 2.67
119 120 9.322773 TGTGCAAAGTATTTCAAAAATCATTCA 57.677 25.926 0.00 0.00 35.03 2.57
126 127 8.949177 AGTATTTCAAAAATCATTCATTTGGGC 58.051 29.630 0.00 0.00 34.69 5.36
127 128 7.762588 ATTTCAAAAATCATTCATTTGGGCA 57.237 28.000 0.00 0.00 34.69 5.36
128 129 7.578310 TTTCAAAAATCATTCATTTGGGCAA 57.422 28.000 0.00 0.00 34.69 4.52
129 130 7.762588 TTCAAAAATCATTCATTTGGGCAAT 57.237 28.000 0.00 0.00 34.69 3.56
130 131 7.762588 TCAAAAATCATTCATTTGGGCAATT 57.237 28.000 0.00 0.00 34.69 2.32
131 132 8.179509 TCAAAAATCATTCATTTGGGCAATTT 57.820 26.923 0.00 0.00 34.69 1.82
132 133 8.082852 TCAAAAATCATTCATTTGGGCAATTTG 58.917 29.630 0.00 0.00 34.69 2.32
133 134 7.527568 AAAATCATTCATTTGGGCAATTTGT 57.472 28.000 0.00 0.00 34.69 2.83
134 135 8.632906 AAAATCATTCATTTGGGCAATTTGTA 57.367 26.923 0.00 0.00 34.69 2.41
135 136 8.810990 AAATCATTCATTTGGGCAATTTGTAT 57.189 26.923 0.00 0.00 33.07 2.29
136 137 8.810990 AATCATTCATTTGGGCAATTTGTATT 57.189 26.923 0.00 0.00 0.00 1.89
137 138 8.810990 ATCATTCATTTGGGCAATTTGTATTT 57.189 26.923 0.00 0.00 0.00 1.40
138 139 8.041829 TCATTCATTTGGGCAATTTGTATTTG 57.958 30.769 0.00 0.00 0.00 2.32
139 140 7.664731 TCATTCATTTGGGCAATTTGTATTTGT 59.335 29.630 0.00 0.00 0.00 2.83
140 141 6.798315 TCATTTGGGCAATTTGTATTTGTG 57.202 33.333 0.00 0.00 0.00 3.33
141 142 6.294473 TCATTTGGGCAATTTGTATTTGTGT 58.706 32.000 0.00 0.00 0.00 3.72
142 143 6.769822 TCATTTGGGCAATTTGTATTTGTGTT 59.230 30.769 0.00 0.00 0.00 3.32
143 144 6.610741 TTTGGGCAATTTGTATTTGTGTTC 57.389 33.333 0.00 0.00 0.00 3.18
144 145 5.282055 TGGGCAATTTGTATTTGTGTTCA 57.718 34.783 0.00 0.00 0.00 3.18
145 146 5.674525 TGGGCAATTTGTATTTGTGTTCAA 58.325 33.333 0.00 0.00 0.00 2.69
146 147 5.757320 TGGGCAATTTGTATTTGTGTTCAAG 59.243 36.000 0.00 0.00 34.88 3.02
147 148 5.757808 GGGCAATTTGTATTTGTGTTCAAGT 59.242 36.000 0.00 0.00 34.88 3.16
148 149 6.259829 GGGCAATTTGTATTTGTGTTCAAGTT 59.740 34.615 0.00 0.00 34.88 2.66
149 150 7.201688 GGGCAATTTGTATTTGTGTTCAAGTTT 60.202 33.333 0.00 0.00 34.88 2.66
150 151 7.850492 GGCAATTTGTATTTGTGTTCAAGTTTC 59.150 33.333 0.00 0.00 34.88 2.78
151 152 8.603181 GCAATTTGTATTTGTGTTCAAGTTTCT 58.397 29.630 0.00 0.00 34.88 2.52
153 154 8.871686 ATTTGTATTTGTGTTCAAGTTTCTCC 57.128 30.769 0.00 0.00 34.88 3.71
154 155 7.397892 TTGTATTTGTGTTCAAGTTTCTCCA 57.602 32.000 0.00 0.00 34.88 3.86
155 156 7.026631 TGTATTTGTGTTCAAGTTTCTCCAG 57.973 36.000 0.00 0.00 34.88 3.86
156 157 6.601613 TGTATTTGTGTTCAAGTTTCTCCAGT 59.398 34.615 0.00 0.00 34.88 4.00
157 158 5.975693 TTTGTGTTCAAGTTTCTCCAGTT 57.024 34.783 0.00 0.00 34.88 3.16
158 159 7.639113 ATTTGTGTTCAAGTTTCTCCAGTTA 57.361 32.000 0.00 0.00 34.88 2.24
159 160 6.677781 TTGTGTTCAAGTTTCTCCAGTTAG 57.322 37.500 0.00 0.00 0.00 2.34
160 161 5.741011 TGTGTTCAAGTTTCTCCAGTTAGT 58.259 37.500 0.00 0.00 0.00 2.24
161 162 6.177610 TGTGTTCAAGTTTCTCCAGTTAGTT 58.822 36.000 0.00 0.00 0.00 2.24
162 163 6.315393 TGTGTTCAAGTTTCTCCAGTTAGTTC 59.685 38.462 0.00 0.00 0.00 3.01
163 164 6.315393 GTGTTCAAGTTTCTCCAGTTAGTTCA 59.685 38.462 0.00 0.00 0.00 3.18
164 165 7.012421 GTGTTCAAGTTTCTCCAGTTAGTTCAT 59.988 37.037 0.00 0.00 0.00 2.57
165 166 7.226720 TGTTCAAGTTTCTCCAGTTAGTTCATC 59.773 37.037 0.00 0.00 0.00 2.92
166 167 7.067496 TCAAGTTTCTCCAGTTAGTTCATCT 57.933 36.000 0.00 0.00 0.00 2.90
167 168 7.155328 TCAAGTTTCTCCAGTTAGTTCATCTC 58.845 38.462 0.00 0.00 0.00 2.75
168 169 6.672266 AGTTTCTCCAGTTAGTTCATCTCA 57.328 37.500 0.00 0.00 0.00 3.27
169 170 7.067496 AGTTTCTCCAGTTAGTTCATCTCAA 57.933 36.000 0.00 0.00 0.00 3.02
170 171 6.931840 AGTTTCTCCAGTTAGTTCATCTCAAC 59.068 38.462 0.00 0.00 0.00 3.18
171 172 6.419484 TTCTCCAGTTAGTTCATCTCAACA 57.581 37.500 0.00 0.00 0.00 3.33
172 173 6.419484 TCTCCAGTTAGTTCATCTCAACAA 57.581 37.500 0.00 0.00 0.00 2.83
173 174 6.826668 TCTCCAGTTAGTTCATCTCAACAAA 58.173 36.000 0.00 0.00 0.00 2.83
174 175 7.279615 TCTCCAGTTAGTTCATCTCAACAAAA 58.720 34.615 0.00 0.00 0.00 2.44
175 176 7.773224 TCTCCAGTTAGTTCATCTCAACAAAAA 59.227 33.333 0.00 0.00 0.00 1.94
176 177 8.463930 TCCAGTTAGTTCATCTCAACAAAAAT 57.536 30.769 0.00 0.00 0.00 1.82
177 178 8.352201 TCCAGTTAGTTCATCTCAACAAAAATG 58.648 33.333 0.00 0.00 0.00 2.32
178 179 7.115378 CCAGTTAGTTCATCTCAACAAAAATGC 59.885 37.037 0.00 0.00 0.00 3.56
179 180 7.648908 CAGTTAGTTCATCTCAACAAAAATGCA 59.351 33.333 0.00 0.00 0.00 3.96
180 181 8.362639 AGTTAGTTCATCTCAACAAAAATGCAT 58.637 29.630 0.00 0.00 0.00 3.96
181 182 8.981647 GTTAGTTCATCTCAACAAAAATGCATT 58.018 29.630 5.99 5.99 0.00 3.56
182 183 7.647907 AGTTCATCTCAACAAAAATGCATTC 57.352 32.000 13.38 0.00 0.00 2.67
183 184 6.647895 AGTTCATCTCAACAAAAATGCATTCC 59.352 34.615 13.38 0.00 0.00 3.01
184 185 5.481105 TCATCTCAACAAAAATGCATTCCC 58.519 37.500 13.38 0.00 0.00 3.97
185 186 5.246656 TCATCTCAACAAAAATGCATTCCCT 59.753 36.000 13.38 0.00 0.00 4.20
186 187 5.138125 TCTCAACAAAAATGCATTCCCTC 57.862 39.130 13.38 0.00 0.00 4.30
187 188 4.021192 TCTCAACAAAAATGCATTCCCTCC 60.021 41.667 13.38 0.00 0.00 4.30
188 189 3.645212 TCAACAAAAATGCATTCCCTCCA 59.355 39.130 13.38 0.00 0.00 3.86
189 190 4.286549 TCAACAAAAATGCATTCCCTCCAT 59.713 37.500 13.38 0.00 0.00 3.41
190 191 4.914177 ACAAAAATGCATTCCCTCCATT 57.086 36.364 13.38 0.00 0.00 3.16
191 192 4.835678 ACAAAAATGCATTCCCTCCATTC 58.164 39.130 13.38 0.00 0.00 2.67
192 193 3.806625 AAAATGCATTCCCTCCATTCG 57.193 42.857 13.38 0.00 0.00 3.34
193 194 1.696063 AATGCATTCCCTCCATTCGG 58.304 50.000 5.99 0.00 0.00 4.30
194 195 0.846015 ATGCATTCCCTCCATTCGGA 59.154 50.000 0.00 0.00 39.79 4.55
195 196 0.623194 TGCATTCCCTCCATTCGGAA 59.377 50.000 0.00 0.00 42.21 4.30
196 197 1.005332 TGCATTCCCTCCATTCGGAAA 59.995 47.619 0.00 0.00 42.21 3.13
197 198 2.310538 GCATTCCCTCCATTCGGAAAT 58.689 47.619 0.00 0.00 42.21 2.17
198 199 3.117701 TGCATTCCCTCCATTCGGAAATA 60.118 43.478 0.00 0.00 42.21 1.40
199 200 3.888930 GCATTCCCTCCATTCGGAAATAA 59.111 43.478 0.00 0.00 42.21 1.40
200 201 4.261614 GCATTCCCTCCATTCGGAAATAAC 60.262 45.833 0.00 0.00 42.21 1.89
201 202 4.855298 TTCCCTCCATTCGGAAATAACT 57.145 40.909 0.00 0.00 42.21 2.24
202 203 4.150897 TCCCTCCATTCGGAAATAACTG 57.849 45.455 0.00 0.00 42.21 3.16
203 204 3.778075 TCCCTCCATTCGGAAATAACTGA 59.222 43.478 0.00 0.00 42.21 3.41
204 205 3.877508 CCCTCCATTCGGAAATAACTGAC 59.122 47.826 0.00 0.00 42.21 3.51
205 206 4.513442 CCTCCATTCGGAAATAACTGACA 58.487 43.478 0.00 0.00 42.21 3.58
206 207 5.126067 CCTCCATTCGGAAATAACTGACAT 58.874 41.667 0.00 0.00 42.21 3.06
207 208 5.008019 CCTCCATTCGGAAATAACTGACATG 59.992 44.000 0.00 0.00 42.21 3.21
208 209 4.881273 TCCATTCGGAAATAACTGACATGG 59.119 41.667 0.00 0.00 38.83 3.66
209 210 4.640201 CCATTCGGAAATAACTGACATGGT 59.360 41.667 0.00 0.00 33.90 3.55
210 211 5.220854 CCATTCGGAAATAACTGACATGGTC 60.221 44.000 0.00 0.00 33.90 4.02
211 212 4.819105 TCGGAAATAACTGACATGGTCT 57.181 40.909 0.00 0.00 33.15 3.85
212 213 4.755411 TCGGAAATAACTGACATGGTCTC 58.245 43.478 0.00 0.00 33.15 3.36
213 214 4.221924 TCGGAAATAACTGACATGGTCTCA 59.778 41.667 0.00 0.00 33.15 3.27
214 215 4.568359 CGGAAATAACTGACATGGTCTCAG 59.432 45.833 9.61 9.61 40.97 3.35
220 221 4.422073 ACTGACATGGTCTCAGTTCAAA 57.578 40.909 10.77 0.00 44.97 2.69
221 222 4.978099 ACTGACATGGTCTCAGTTCAAAT 58.022 39.130 10.77 0.00 44.97 2.32
222 223 6.114187 ACTGACATGGTCTCAGTTCAAATA 57.886 37.500 10.77 0.00 44.97 1.40
223 224 6.533730 ACTGACATGGTCTCAGTTCAAATAA 58.466 36.000 10.77 0.00 44.97 1.40
224 225 6.428159 ACTGACATGGTCTCAGTTCAAATAAC 59.572 38.462 10.77 0.00 44.97 1.89
225 226 6.533730 TGACATGGTCTCAGTTCAAATAACT 58.466 36.000 0.00 0.00 33.15 2.24
226 227 6.427853 TGACATGGTCTCAGTTCAAATAACTG 59.572 38.462 10.85 10.85 46.67 3.16
236 237 6.445357 AGTTCAAATAACTGACGTGGTTTT 57.555 33.333 0.00 0.00 0.00 2.43
237 238 6.492254 AGTTCAAATAACTGACGTGGTTTTC 58.508 36.000 0.00 0.00 0.00 2.29
238 239 6.094325 AGTTCAAATAACTGACGTGGTTTTCA 59.906 34.615 0.00 0.00 0.00 2.69
239 240 6.438259 TCAAATAACTGACGTGGTTTTCAA 57.562 33.333 0.00 0.00 0.00 2.69
240 241 6.853720 TCAAATAACTGACGTGGTTTTCAAA 58.146 32.000 0.00 0.00 0.00 2.69
241 242 7.313646 TCAAATAACTGACGTGGTTTTCAAAA 58.686 30.769 0.00 0.00 0.00 2.44
242 243 7.273815 TCAAATAACTGACGTGGTTTTCAAAAC 59.726 33.333 4.25 4.25 0.00 2.43
243 244 4.776795 AACTGACGTGGTTTTCAAAACT 57.223 36.364 12.74 0.00 0.00 2.66
244 245 4.091453 ACTGACGTGGTTTTCAAAACTG 57.909 40.909 12.74 6.03 0.00 3.16
245 246 3.754323 ACTGACGTGGTTTTCAAAACTGA 59.246 39.130 12.74 0.00 0.00 3.41
246 247 4.216687 ACTGACGTGGTTTTCAAAACTGAA 59.783 37.500 12.74 0.00 0.00 3.02
247 248 4.477780 TGACGTGGTTTTCAAAACTGAAC 58.522 39.130 12.74 8.10 0.00 3.18
248 249 4.216687 TGACGTGGTTTTCAAAACTGAACT 59.783 37.500 12.74 1.07 0.00 3.01
249 250 5.411977 TGACGTGGTTTTCAAAACTGAACTA 59.588 36.000 12.74 0.00 0.00 2.24
250 251 6.072618 TGACGTGGTTTTCAAAACTGAACTAA 60.073 34.615 12.74 0.00 0.00 2.24
251 252 6.679843 ACGTGGTTTTCAAAACTGAACTAAA 58.320 32.000 12.74 0.00 0.00 1.85
252 253 7.146648 ACGTGGTTTTCAAAACTGAACTAAAA 58.853 30.769 12.74 0.00 0.00 1.52
253 254 7.115236 ACGTGGTTTTCAAAACTGAACTAAAAC 59.885 33.333 12.74 0.00 36.54 2.43
254 255 7.327518 CGTGGTTTTCAAAACTGAACTAAAACT 59.672 33.333 12.74 0.00 37.13 2.66
255 256 9.628746 GTGGTTTTCAAAACTGAACTAAAACTA 57.371 29.630 12.74 0.00 37.13 2.24
256 257 9.628746 TGGTTTTCAAAACTGAACTAAAACTAC 57.371 29.630 12.74 0.00 37.13 2.73
257 258 8.791605 GGTTTTCAAAACTGAACTAAAACTACG 58.208 33.333 12.74 0.00 37.13 3.51
258 259 9.333497 GTTTTCAAAACTGAACTAAAACTACGT 57.667 29.630 5.71 0.00 35.18 3.57
259 260 9.545611 TTTTCAAAACTGAACTAAAACTACGTC 57.454 29.630 0.00 0.00 0.00 4.34
260 261 7.830940 TCAAAACTGAACTAAAACTACGTCA 57.169 32.000 0.00 0.00 0.00 4.35
261 262 7.902032 TCAAAACTGAACTAAAACTACGTCAG 58.098 34.615 0.00 0.00 0.00 3.51
262 263 7.546667 TCAAAACTGAACTAAAACTACGTCAGT 59.453 33.333 0.00 0.00 40.05 3.41
274 275 4.161333 ACTACGTCAGTTATTTCCGAACG 58.839 43.478 0.00 0.00 31.59 3.95
275 276 2.331194 ACGTCAGTTATTTCCGAACGG 58.669 47.619 6.94 6.94 31.85 4.44
276 277 2.030007 ACGTCAGTTATTTCCGAACGGA 60.030 45.455 12.04 12.04 43.52 4.69
277 278 2.597305 CGTCAGTTATTTCCGAACGGAG 59.403 50.000 15.34 3.45 46.06 4.63
278 279 2.928116 GTCAGTTATTTCCGAACGGAGG 59.072 50.000 15.34 2.59 46.06 4.30
279 280 2.093869 TCAGTTATTTCCGAACGGAGGG 60.094 50.000 15.34 3.18 46.06 4.30
280 281 2.093869 CAGTTATTTCCGAACGGAGGGA 60.094 50.000 15.34 7.17 46.06 4.20
281 282 2.167900 AGTTATTTCCGAACGGAGGGAG 59.832 50.000 15.34 0.00 46.06 4.30
282 283 1.856629 TATTTCCGAACGGAGGGAGT 58.143 50.000 15.34 1.96 46.06 3.85
283 284 1.856629 ATTTCCGAACGGAGGGAGTA 58.143 50.000 15.34 0.00 46.06 2.59
284 285 1.856629 TTTCCGAACGGAGGGAGTAT 58.143 50.000 15.34 0.00 46.06 2.12
285 286 1.108776 TTCCGAACGGAGGGAGTATG 58.891 55.000 15.34 0.00 46.06 2.39
286 287 0.033796 TCCGAACGGAGGGAGTATGT 60.034 55.000 12.04 0.00 39.76 2.29
287 288 0.822164 CCGAACGGAGGGAGTATGTT 59.178 55.000 7.53 0.00 37.50 2.71
288 289 1.470979 CCGAACGGAGGGAGTATGTTG 60.471 57.143 7.53 0.00 37.50 3.33
295 296 3.068307 CGGAGGGAGTATGTTGTAGAAGG 59.932 52.174 0.00 0.00 0.00 3.46
326 327 3.342377 TCGCCCAAGAATCACATACAA 57.658 42.857 0.00 0.00 0.00 2.41
328 329 4.075682 TCGCCCAAGAATCACATACAAAA 58.924 39.130 0.00 0.00 0.00 2.44
329 330 4.083003 TCGCCCAAGAATCACATACAAAAC 60.083 41.667 0.00 0.00 0.00 2.43
330 331 4.320861 CGCCCAAGAATCACATACAAAACA 60.321 41.667 0.00 0.00 0.00 2.83
331 332 5.622007 CGCCCAAGAATCACATACAAAACAT 60.622 40.000 0.00 0.00 0.00 2.71
332 333 5.577945 GCCCAAGAATCACATACAAAACATG 59.422 40.000 0.00 0.00 0.00 3.21
333 334 6.572119 GCCCAAGAATCACATACAAAACATGA 60.572 38.462 0.00 0.00 0.00 3.07
334 335 6.808212 CCCAAGAATCACATACAAAACATGAC 59.192 38.462 0.00 0.00 0.00 3.06
335 336 7.309377 CCCAAGAATCACATACAAAACATGACT 60.309 37.037 0.00 0.00 0.00 3.41
336 337 8.729756 CCAAGAATCACATACAAAACATGACTA 58.270 33.333 0.00 0.00 0.00 2.59
339 340 9.896645 AGAATCACATACAAAACATGACTATCT 57.103 29.630 0.00 0.00 0.00 1.98
349 350 8.660373 ACAAAACATGACTATCTCGAAAATCTC 58.340 33.333 0.00 0.00 0.00 2.75
364 365 1.800805 ATCTCTTGGACAAGTGCACG 58.199 50.000 12.01 0.00 39.38 5.34
365 366 0.249868 TCTCTTGGACAAGTGCACGG 60.250 55.000 12.01 10.63 39.38 4.94
367 368 2.203280 TTGGACAAGTGCACGGGG 60.203 61.111 12.01 7.54 0.00 5.73
373 375 3.484806 AAGTGCACGGGGGTGTCA 61.485 61.111 12.01 0.00 0.00 3.58
393 395 8.787852 GGTGTCATCTGTTTTCTCTTTATTTCT 58.212 33.333 0.00 0.00 0.00 2.52
396 398 9.833182 GTCATCTGTTTTCTCTTTATTTCTTCC 57.167 33.333 0.00 0.00 0.00 3.46
397 399 9.014297 TCATCTGTTTTCTCTTTATTTCTTCCC 57.986 33.333 0.00 0.00 0.00 3.97
398 400 8.796475 CATCTGTTTTCTCTTTATTTCTTCCCA 58.204 33.333 0.00 0.00 0.00 4.37
399 401 8.396272 TCTGTTTTCTCTTTATTTCTTCCCAG 57.604 34.615 0.00 0.00 0.00 4.45
400 402 7.998964 TCTGTTTTCTCTTTATTTCTTCCCAGT 59.001 33.333 0.00 0.00 0.00 4.00
401 403 8.166422 TGTTTTCTCTTTATTTCTTCCCAGTC 57.834 34.615 0.00 0.00 0.00 3.51
402 404 7.777910 TGTTTTCTCTTTATTTCTTCCCAGTCA 59.222 33.333 0.00 0.00 0.00 3.41
403 405 8.797438 GTTTTCTCTTTATTTCTTCCCAGTCAT 58.203 33.333 0.00 0.00 0.00 3.06
404 406 8.940397 TTTCTCTTTATTTCTTCCCAGTCATT 57.060 30.769 0.00 0.00 0.00 2.57
406 408 9.449719 TTCTCTTTATTTCTTCCCAGTCATTAC 57.550 33.333 0.00 0.00 0.00 1.89
407 409 7.764443 TCTCTTTATTTCTTCCCAGTCATTACG 59.236 37.037 0.00 0.00 0.00 3.18
408 410 7.617225 TCTTTATTTCTTCCCAGTCATTACGA 58.383 34.615 0.00 0.00 0.00 3.43
409 411 8.265055 TCTTTATTTCTTCCCAGTCATTACGAT 58.735 33.333 0.00 0.00 0.00 3.73
410 412 7.786178 TTATTTCTTCCCAGTCATTACGATG 57.214 36.000 0.00 0.00 34.46 3.84
411 413 4.819105 TTCTTCCCAGTCATTACGATGT 57.181 40.909 0.00 0.00 34.77 3.06
412 414 4.123497 TCTTCCCAGTCATTACGATGTG 57.877 45.455 0.00 0.00 34.77 3.21
413 415 3.767131 TCTTCCCAGTCATTACGATGTGA 59.233 43.478 0.00 0.00 34.77 3.58
414 416 4.405680 TCTTCCCAGTCATTACGATGTGAT 59.594 41.667 0.00 0.00 34.77 3.06
415 417 4.058721 TCCCAGTCATTACGATGTGATG 57.941 45.455 0.00 0.00 34.77 3.07
416 418 3.133691 CCCAGTCATTACGATGTGATGG 58.866 50.000 0.00 0.75 31.71 3.51
417 419 3.432186 CCCAGTCATTACGATGTGATGGT 60.432 47.826 0.00 0.00 33.40 3.55
418 420 4.202212 CCCAGTCATTACGATGTGATGGTA 60.202 45.833 0.00 0.00 33.40 3.25
419 421 4.745125 CCAGTCATTACGATGTGATGGTAC 59.255 45.833 0.00 0.00 31.71 3.34
420 422 5.348164 CAGTCATTACGATGTGATGGTACA 58.652 41.667 0.00 0.00 37.36 2.90
421 423 5.985530 CAGTCATTACGATGTGATGGTACAT 59.014 40.000 0.00 0.00 43.61 2.29
448 450 2.781945 GCATTGTGCCTGCTTATACC 57.218 50.000 0.00 0.00 37.42 2.73
463 465 9.739276 CCTGCTTATACCATCCTATATCAAAAA 57.261 33.333 0.00 0.00 0.00 1.94
500 502 5.278957 GGAAAAACTCTCATTTGGCTAAGCA 60.279 40.000 0.00 0.00 0.00 3.91
549 557 3.495001 ACTGCTTCTCGAGTTAAAGTTGC 59.505 43.478 13.13 6.98 0.00 4.17
551 559 2.159827 GCTTCTCGAGTTAAAGTTGCCG 60.160 50.000 13.13 0.00 0.00 5.69
566 574 1.539157 TGCCGTGACCATTTGCATTA 58.461 45.000 0.00 0.00 0.00 1.90
569 577 1.815613 CCGTGACCATTTGCATTACCA 59.184 47.619 0.00 0.00 0.00 3.25
588 596 3.559069 CCATGGCATGGTAGATTCTTGT 58.441 45.455 33.65 0.00 45.54 3.16
598 666 6.024552 TGGTAGATTCTTGTTGCCATTTTC 57.975 37.500 0.00 0.00 0.00 2.29
625 693 1.363744 GAATCGCCACTTCACCTCTG 58.636 55.000 0.00 0.00 0.00 3.35
626 694 0.674895 AATCGCCACTTCACCTCTGC 60.675 55.000 0.00 0.00 0.00 4.26
627 695 1.830587 ATCGCCACTTCACCTCTGCA 61.831 55.000 0.00 0.00 0.00 4.41
635 703 3.567164 CACTTCACCTCTGCAAACAAGAT 59.433 43.478 0.00 0.00 0.00 2.40
644 712 5.183713 CCTCTGCAAACAAGATAACATGGAA 59.816 40.000 0.00 0.00 0.00 3.53
696 764 3.739077 GGCAACAATCCCCATTTCG 57.261 52.632 0.00 0.00 0.00 3.46
710 778 2.032894 CCATTTCGCAGCTATGTAACCG 60.033 50.000 0.00 0.00 0.00 4.44
711 779 2.373540 TTTCGCAGCTATGTAACCGT 57.626 45.000 0.00 0.00 0.00 4.83
712 780 3.507103 TTTCGCAGCTATGTAACCGTA 57.493 42.857 0.00 0.00 0.00 4.02
713 781 3.720949 TTCGCAGCTATGTAACCGTAT 57.279 42.857 0.00 0.00 0.00 3.06
808 877 3.040175 CATGCGCGCTCCATCGAT 61.040 61.111 33.29 12.70 0.00 3.59
877 946 2.025981 TCAACTGCTGCCCTCAATACAT 60.026 45.455 0.00 0.00 0.00 2.29
887 956 4.461081 TGCCCTCAATACATAACAAACCAC 59.539 41.667 0.00 0.00 0.00 4.16
999 1096 5.181748 AGAGTACACAAGGATGCAGAAATC 58.818 41.667 0.00 0.00 0.00 2.17
1026 1123 0.253044 ACACAGGCACACACTTGAGT 59.747 50.000 0.00 0.00 0.00 3.41
1033 1130 2.555199 GCACACACTTGAGTCTTGACT 58.445 47.619 2.59 2.59 0.00 3.41
1034 1131 2.541762 GCACACACTTGAGTCTTGACTC 59.458 50.000 20.32 20.32 37.27 3.36
1035 1132 3.739519 GCACACACTTGAGTCTTGACTCT 60.740 47.826 25.21 8.34 37.62 3.24
1475 1575 1.746615 CCAGTTCAGGATGGCCACG 60.747 63.158 8.16 0.00 36.16 4.94
1561 1664 2.048503 CAACCCGTGACCGTCTCC 60.049 66.667 0.00 0.00 0.00 3.71
1562 1665 3.308705 AACCCGTGACCGTCTCCC 61.309 66.667 0.00 0.00 0.00 4.30
1563 1666 4.608774 ACCCGTGACCGTCTCCCA 62.609 66.667 0.00 0.00 0.00 4.37
1564 1667 3.075005 CCCGTGACCGTCTCCCAT 61.075 66.667 0.00 0.00 0.00 4.00
1684 1790 6.092122 CGTCTTCTATATGTCTCCTCTGCTAG 59.908 46.154 0.00 0.00 0.00 3.42
1725 1847 5.981088 ATATGTGCAAATGTTGTTCCTGA 57.019 34.783 0.00 0.00 0.00 3.86
1726 1848 4.669206 ATGTGCAAATGTTGTTCCTGAA 57.331 36.364 0.00 0.00 0.00 3.02
1727 1849 4.462508 TGTGCAAATGTTGTTCCTGAAA 57.537 36.364 0.00 0.00 0.00 2.69
1798 1920 4.058124 TGGTTTCGATCTGTTCAGAACTG 58.942 43.478 14.51 13.62 0.00 3.16
1804 1926 2.533266 TCTGTTCAGAACTGCTGTCC 57.467 50.000 14.51 0.00 45.14 4.02
1806 1928 0.249868 TGTTCAGAACTGCTGTCCCG 60.250 55.000 14.51 0.00 45.14 5.14
1807 1929 1.301716 TTCAGAACTGCTGTCCCGC 60.302 57.895 0.00 0.00 45.14 6.13
1857 1980 6.980577 ACAATTTATGGGAAGGATGGAGTAA 58.019 36.000 0.00 0.00 0.00 2.24
1941 2064 1.643880 CGACCCGTAAAATAACCGCT 58.356 50.000 0.00 0.00 0.00 5.52
2030 2153 3.948004 TAGGGGGCGCGGCAAAATT 62.948 57.895 34.30 16.18 0.00 1.82
2301 2447 2.025155 AGATCTGCGGTAGTTCATCGT 58.975 47.619 0.00 0.00 0.00 3.73
2457 2609 2.361104 TTTGCGGGCATGGACTCC 60.361 61.111 0.00 0.00 0.00 3.85
2633 2808 2.542178 GTGTACGTGCACAGTTCATTCA 59.458 45.455 28.64 7.98 39.07 2.57
2701 2876 3.958147 TGTAGGACGAAGGATGCTCATTA 59.042 43.478 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.035632 TGTTGTTCCCCGCAAAGAAAT 58.964 42.857 0.00 0.00 0.00 2.17
1 2 1.475403 TGTTGTTCCCCGCAAAGAAA 58.525 45.000 0.00 0.00 0.00 2.52
2 3 1.339610 CATGTTGTTCCCCGCAAAGAA 59.660 47.619 0.00 0.00 0.00 2.52
3 4 0.958091 CATGTTGTTCCCCGCAAAGA 59.042 50.000 0.00 0.00 0.00 2.52
4 5 0.958091 TCATGTTGTTCCCCGCAAAG 59.042 50.000 0.00 0.00 0.00 2.77
5 6 1.403814 TTCATGTTGTTCCCCGCAAA 58.596 45.000 0.00 0.00 0.00 3.68
6 7 1.271934 CATTCATGTTGTTCCCCGCAA 59.728 47.619 0.00 0.00 0.00 4.85
7 8 0.887247 CATTCATGTTGTTCCCCGCA 59.113 50.000 0.00 0.00 0.00 5.69
8 9 0.887933 ACATTCATGTTGTTCCCCGC 59.112 50.000 0.00 0.00 37.90 6.13
9 10 3.343617 ACTACATTCATGTTGTTCCCCG 58.656 45.455 8.88 0.00 42.50 5.73
15 16 8.567948 CCTGTTCTTTAACTACATTCATGTTGT 58.432 33.333 0.00 0.00 45.95 3.32
16 17 8.783093 TCCTGTTCTTTAACTACATTCATGTTG 58.217 33.333 0.00 0.00 35.54 3.33
17 18 8.918202 TCCTGTTCTTTAACTACATTCATGTT 57.082 30.769 0.00 0.00 35.54 2.71
18 19 8.918202 TTCCTGTTCTTTAACTACATTCATGT 57.082 30.769 0.00 0.00 37.88 3.21
43 44 6.708054 ACATGAGAAGTCGAAGTCATCTTTTT 59.292 34.615 0.00 0.00 33.64 1.94
44 45 6.146837 CACATGAGAAGTCGAAGTCATCTTTT 59.853 38.462 0.00 0.00 33.64 2.27
45 46 5.636965 CACATGAGAAGTCGAAGTCATCTTT 59.363 40.000 0.00 0.00 33.64 2.52
46 47 5.047731 TCACATGAGAAGTCGAAGTCATCTT 60.048 40.000 0.00 0.00 36.51 2.40
47 48 4.460731 TCACATGAGAAGTCGAAGTCATCT 59.539 41.667 0.00 0.00 0.00 2.90
48 49 4.738124 TCACATGAGAAGTCGAAGTCATC 58.262 43.478 0.00 0.00 0.00 2.92
49 50 4.790765 TCACATGAGAAGTCGAAGTCAT 57.209 40.909 0.00 0.00 0.00 3.06
50 51 4.584327 TTCACATGAGAAGTCGAAGTCA 57.416 40.909 0.00 0.00 0.00 3.41
51 52 5.463724 ACTTTTCACATGAGAAGTCGAAGTC 59.536 40.000 11.05 0.00 43.34 3.01
52 53 5.360591 ACTTTTCACATGAGAAGTCGAAGT 58.639 37.500 11.05 12.24 43.34 3.01
53 54 5.914085 ACTTTTCACATGAGAAGTCGAAG 57.086 39.130 11.05 6.60 43.34 3.79
54 55 7.151976 TGATACTTTTCACATGAGAAGTCGAA 58.848 34.615 18.15 5.24 43.34 3.71
55 56 6.687604 TGATACTTTTCACATGAGAAGTCGA 58.312 36.000 18.15 5.84 43.34 4.20
56 57 6.951256 TGATACTTTTCACATGAGAAGTCG 57.049 37.500 18.15 0.00 43.34 4.18
57 58 7.678218 GCCATGATACTTTTCACATGAGAAGTC 60.678 40.741 18.15 8.45 43.34 3.01
58 59 6.094603 GCCATGATACTTTTCACATGAGAAGT 59.905 38.462 18.52 18.52 46.78 3.01
59 60 6.493116 GCCATGATACTTTTCACATGAGAAG 58.507 40.000 9.90 9.90 41.45 2.85
60 61 5.065090 CGCCATGATACTTTTCACATGAGAA 59.935 40.000 0.00 0.00 41.45 2.87
61 62 4.571984 CGCCATGATACTTTTCACATGAGA 59.428 41.667 0.00 0.00 41.45 3.27
62 63 4.333649 ACGCCATGATACTTTTCACATGAG 59.666 41.667 0.00 0.00 41.45 2.90
63 64 4.094739 CACGCCATGATACTTTTCACATGA 59.905 41.667 0.00 0.00 41.45 3.07
64 65 4.142622 ACACGCCATGATACTTTTCACATG 60.143 41.667 0.00 0.00 39.51 3.21
65 66 4.009675 ACACGCCATGATACTTTTCACAT 58.990 39.130 0.00 0.00 0.00 3.21
66 67 3.407698 ACACGCCATGATACTTTTCACA 58.592 40.909 0.00 0.00 0.00 3.58
67 68 3.435327 TGACACGCCATGATACTTTTCAC 59.565 43.478 0.00 0.00 0.00 3.18
68 69 3.669536 TGACACGCCATGATACTTTTCA 58.330 40.909 0.00 0.00 0.00 2.69
69 70 4.403453 GTTGACACGCCATGATACTTTTC 58.597 43.478 0.00 0.00 0.00 2.29
70 71 3.190535 GGTTGACACGCCATGATACTTTT 59.809 43.478 0.00 0.00 0.00 2.27
71 72 2.747446 GGTTGACACGCCATGATACTTT 59.253 45.455 0.00 0.00 0.00 2.66
72 73 2.027192 AGGTTGACACGCCATGATACTT 60.027 45.455 0.00 0.00 0.00 2.24
73 74 1.555075 AGGTTGACACGCCATGATACT 59.445 47.619 0.00 0.00 0.00 2.12
74 75 1.665679 CAGGTTGACACGCCATGATAC 59.334 52.381 0.00 0.00 0.00 2.24
75 76 1.277842 ACAGGTTGACACGCCATGATA 59.722 47.619 0.00 0.00 0.00 2.15
76 77 0.036732 ACAGGTTGACACGCCATGAT 59.963 50.000 0.00 0.00 0.00 2.45
77 78 0.884259 CACAGGTTGACACGCCATGA 60.884 55.000 0.00 0.00 0.00 3.07
78 79 1.575922 CACAGGTTGACACGCCATG 59.424 57.895 0.00 0.00 0.00 3.66
79 80 2.260869 GCACAGGTTGACACGCCAT 61.261 57.895 0.00 0.00 0.00 4.40
80 81 2.899838 GCACAGGTTGACACGCCA 60.900 61.111 0.00 0.00 0.00 5.69
81 82 1.999071 TTTGCACAGGTTGACACGCC 61.999 55.000 0.00 0.00 0.00 5.68
82 83 0.592247 CTTTGCACAGGTTGACACGC 60.592 55.000 0.00 0.00 0.00 5.34
83 84 0.732571 ACTTTGCACAGGTTGACACG 59.267 50.000 4.63 0.00 0.00 4.49
84 85 4.568152 AATACTTTGCACAGGTTGACAC 57.432 40.909 4.63 0.00 0.00 3.67
85 86 4.642437 TGAAATACTTTGCACAGGTTGACA 59.358 37.500 4.63 1.81 0.00 3.58
86 87 5.181690 TGAAATACTTTGCACAGGTTGAC 57.818 39.130 4.63 0.00 0.00 3.18
87 88 5.843673 TTGAAATACTTTGCACAGGTTGA 57.156 34.783 4.63 0.00 0.00 3.18
88 89 6.900568 TTTTGAAATACTTTGCACAGGTTG 57.099 33.333 4.63 0.00 0.00 3.77
89 90 7.768120 TGATTTTTGAAATACTTTGCACAGGTT 59.232 29.630 4.63 0.00 0.00 3.50
90 91 7.271511 TGATTTTTGAAATACTTTGCACAGGT 58.728 30.769 4.63 0.00 0.00 4.00
91 92 7.712264 TGATTTTTGAAATACTTTGCACAGG 57.288 32.000 4.63 0.00 0.00 4.00
92 93 9.801714 GAATGATTTTTGAAATACTTTGCACAG 57.198 29.630 0.00 0.00 0.00 3.66
93 94 9.322773 TGAATGATTTTTGAAATACTTTGCACA 57.677 25.926 0.00 0.00 0.00 4.57
100 101 8.949177 GCCCAAATGAATGATTTTTGAAATACT 58.051 29.630 4.38 0.00 31.41 2.12
101 102 8.728833 TGCCCAAATGAATGATTTTTGAAATAC 58.271 29.630 4.38 0.00 31.41 1.89
102 103 8.859236 TGCCCAAATGAATGATTTTTGAAATA 57.141 26.923 4.38 0.00 31.41 1.40
103 104 7.762588 TGCCCAAATGAATGATTTTTGAAAT 57.237 28.000 4.38 0.00 31.41 2.17
104 105 7.578310 TTGCCCAAATGAATGATTTTTGAAA 57.422 28.000 4.38 0.00 31.41 2.69
105 106 7.762588 ATTGCCCAAATGAATGATTTTTGAA 57.237 28.000 4.38 0.00 31.41 2.69
106 107 7.762588 AATTGCCCAAATGAATGATTTTTGA 57.237 28.000 4.38 0.00 31.41 2.69
107 108 7.868415 ACAAATTGCCCAAATGAATGATTTTTG 59.132 29.630 0.00 0.00 31.41 2.44
108 109 7.953752 ACAAATTGCCCAAATGAATGATTTTT 58.046 26.923 0.00 0.00 31.41 1.94
109 110 7.527568 ACAAATTGCCCAAATGAATGATTTT 57.472 28.000 0.00 0.00 31.41 1.82
110 111 8.810990 ATACAAATTGCCCAAATGAATGATTT 57.189 26.923 0.00 0.00 34.34 2.17
111 112 8.810990 AATACAAATTGCCCAAATGAATGATT 57.189 26.923 0.00 0.00 0.00 2.57
112 113 8.679100 CAAATACAAATTGCCCAAATGAATGAT 58.321 29.630 0.00 0.00 0.00 2.45
113 114 7.664731 ACAAATACAAATTGCCCAAATGAATGA 59.335 29.630 0.00 0.00 0.00 2.57
114 115 7.751348 CACAAATACAAATTGCCCAAATGAATG 59.249 33.333 0.00 0.00 0.00 2.67
115 116 7.447853 ACACAAATACAAATTGCCCAAATGAAT 59.552 29.630 0.00 0.00 0.00 2.57
116 117 6.769822 ACACAAATACAAATTGCCCAAATGAA 59.230 30.769 0.00 0.00 0.00 2.57
117 118 6.294473 ACACAAATACAAATTGCCCAAATGA 58.706 32.000 0.00 0.00 0.00 2.57
118 119 6.557291 ACACAAATACAAATTGCCCAAATG 57.443 33.333 0.00 0.00 0.00 2.32
119 120 6.769822 TGAACACAAATACAAATTGCCCAAAT 59.230 30.769 0.00 0.00 0.00 2.32
120 121 6.115446 TGAACACAAATACAAATTGCCCAAA 58.885 32.000 0.00 0.00 0.00 3.28
121 122 5.674525 TGAACACAAATACAAATTGCCCAA 58.325 33.333 0.00 0.00 0.00 4.12
122 123 5.282055 TGAACACAAATACAAATTGCCCA 57.718 34.783 0.00 0.00 0.00 5.36
123 124 5.757808 ACTTGAACACAAATACAAATTGCCC 59.242 36.000 0.00 0.00 0.00 5.36
124 125 6.843069 ACTTGAACACAAATACAAATTGCC 57.157 33.333 0.00 0.00 0.00 4.52
125 126 8.603181 AGAAACTTGAACACAAATACAAATTGC 58.397 29.630 0.00 0.00 0.00 3.56
127 128 9.313118 GGAGAAACTTGAACACAAATACAAATT 57.687 29.630 0.00 0.00 0.00 1.82
128 129 8.474025 TGGAGAAACTTGAACACAAATACAAAT 58.526 29.630 0.00 0.00 0.00 2.32
129 130 7.831753 TGGAGAAACTTGAACACAAATACAAA 58.168 30.769 0.00 0.00 0.00 2.83
130 131 7.122055 ACTGGAGAAACTTGAACACAAATACAA 59.878 33.333 0.00 0.00 0.00 2.41
131 132 6.601613 ACTGGAGAAACTTGAACACAAATACA 59.398 34.615 0.00 0.00 0.00 2.29
132 133 7.027778 ACTGGAGAAACTTGAACACAAATAC 57.972 36.000 0.00 0.00 0.00 1.89
133 134 7.639113 AACTGGAGAAACTTGAACACAAATA 57.361 32.000 0.00 0.00 0.00 1.40
134 135 6.530019 AACTGGAGAAACTTGAACACAAAT 57.470 33.333 0.00 0.00 0.00 2.32
135 136 5.975693 AACTGGAGAAACTTGAACACAAA 57.024 34.783 0.00 0.00 0.00 2.83
136 137 6.177610 ACTAACTGGAGAAACTTGAACACAA 58.822 36.000 0.00 0.00 0.00 3.33
137 138 5.741011 ACTAACTGGAGAAACTTGAACACA 58.259 37.500 0.00 0.00 0.00 3.72
138 139 6.315393 TGAACTAACTGGAGAAACTTGAACAC 59.685 38.462 0.00 0.00 0.00 3.32
139 140 6.411376 TGAACTAACTGGAGAAACTTGAACA 58.589 36.000 0.00 0.00 0.00 3.18
140 141 6.920569 TGAACTAACTGGAGAAACTTGAAC 57.079 37.500 0.00 0.00 0.00 3.18
141 142 7.509546 AGATGAACTAACTGGAGAAACTTGAA 58.490 34.615 0.00 0.00 0.00 2.69
142 143 7.067496 AGATGAACTAACTGGAGAAACTTGA 57.933 36.000 0.00 0.00 0.00 3.02
143 144 6.931281 TGAGATGAACTAACTGGAGAAACTTG 59.069 38.462 0.00 0.00 0.00 3.16
144 145 7.067496 TGAGATGAACTAACTGGAGAAACTT 57.933 36.000 0.00 0.00 0.00 2.66
145 146 6.672266 TGAGATGAACTAACTGGAGAAACT 57.328 37.500 0.00 0.00 0.00 2.66
146 147 6.706270 TGTTGAGATGAACTAACTGGAGAAAC 59.294 38.462 0.00 0.00 0.00 2.78
147 148 6.826668 TGTTGAGATGAACTAACTGGAGAAA 58.173 36.000 0.00 0.00 0.00 2.52
148 149 6.419484 TGTTGAGATGAACTAACTGGAGAA 57.581 37.500 0.00 0.00 0.00 2.87
149 150 6.419484 TTGTTGAGATGAACTAACTGGAGA 57.581 37.500 0.00 0.00 0.00 3.71
150 151 7.496529 TTTTGTTGAGATGAACTAACTGGAG 57.503 36.000 0.00 0.00 0.00 3.86
151 152 7.873719 TTTTTGTTGAGATGAACTAACTGGA 57.126 32.000 0.00 0.00 0.00 3.86
152 153 7.115378 GCATTTTTGTTGAGATGAACTAACTGG 59.885 37.037 0.00 0.00 0.00 4.00
153 154 7.648908 TGCATTTTTGTTGAGATGAACTAACTG 59.351 33.333 0.00 0.00 0.00 3.16
154 155 7.715657 TGCATTTTTGTTGAGATGAACTAACT 58.284 30.769 0.00 0.00 0.00 2.24
155 156 7.928908 TGCATTTTTGTTGAGATGAACTAAC 57.071 32.000 0.00 0.00 0.00 2.34
156 157 9.195411 GAATGCATTTTTGTTGAGATGAACTAA 57.805 29.630 14.33 0.00 0.00 2.24
157 158 7.814107 GGAATGCATTTTTGTTGAGATGAACTA 59.186 33.333 14.33 0.00 0.00 2.24
158 159 6.647895 GGAATGCATTTTTGTTGAGATGAACT 59.352 34.615 14.33 0.00 0.00 3.01
159 160 6.128472 GGGAATGCATTTTTGTTGAGATGAAC 60.128 38.462 14.33 0.00 0.00 3.18
160 161 5.933463 GGGAATGCATTTTTGTTGAGATGAA 59.067 36.000 14.33 0.00 0.00 2.57
161 162 5.246656 AGGGAATGCATTTTTGTTGAGATGA 59.753 36.000 14.33 0.00 0.00 2.92
162 163 5.484715 AGGGAATGCATTTTTGTTGAGATG 58.515 37.500 14.33 0.00 0.00 2.90
163 164 5.337813 GGAGGGAATGCATTTTTGTTGAGAT 60.338 40.000 14.33 0.00 0.00 2.75
164 165 4.021192 GGAGGGAATGCATTTTTGTTGAGA 60.021 41.667 14.33 0.00 0.00 3.27
165 166 4.248058 GGAGGGAATGCATTTTTGTTGAG 58.752 43.478 14.33 0.00 0.00 3.02
166 167 3.645212 TGGAGGGAATGCATTTTTGTTGA 59.355 39.130 14.33 0.00 0.00 3.18
167 168 4.005487 TGGAGGGAATGCATTTTTGTTG 57.995 40.909 14.33 0.00 0.00 3.33
168 169 4.914177 ATGGAGGGAATGCATTTTTGTT 57.086 36.364 14.33 0.00 36.38 2.83
169 170 4.914177 AATGGAGGGAATGCATTTTTGT 57.086 36.364 14.33 0.00 46.74 2.83
175 176 0.846015 TCCGAATGGAGGGAATGCAT 59.154 50.000 0.00 0.00 42.62 3.96
176 177 2.306124 TCCGAATGGAGGGAATGCA 58.694 52.632 0.00 0.00 40.17 3.96
184 185 9.058544 GACCATGTCAGTTATTTCCGAATGGAG 62.059 44.444 4.94 0.00 37.81 3.86
185 186 4.881273 CCATGTCAGTTATTTCCGAATGGA 59.119 41.667 0.00 0.00 44.61 3.41
186 187 4.640201 ACCATGTCAGTTATTTCCGAATGG 59.360 41.667 0.00 0.00 38.38 3.16
187 188 5.586243 AGACCATGTCAGTTATTTCCGAATG 59.414 40.000 0.00 0.00 34.60 2.67
188 189 5.745227 AGACCATGTCAGTTATTTCCGAAT 58.255 37.500 0.00 0.00 34.60 3.34
189 190 5.160607 AGACCATGTCAGTTATTTCCGAA 57.839 39.130 0.00 0.00 34.60 4.30
190 191 4.221924 TGAGACCATGTCAGTTATTTCCGA 59.778 41.667 0.00 0.00 34.60 4.55
191 192 4.503910 TGAGACCATGTCAGTTATTTCCG 58.496 43.478 0.00 0.00 34.60 4.30
200 201 6.652481 AGTTATTTGAACTGAGACCATGTCAG 59.348 38.462 9.61 9.61 45.94 3.51
201 202 6.533730 AGTTATTTGAACTGAGACCATGTCA 58.466 36.000 0.00 0.00 34.60 3.58
212 213 5.418310 AACCACGTCAGTTATTTGAACTG 57.582 39.130 10.52 10.52 46.67 3.16
213 214 6.094325 TGAAAACCACGTCAGTTATTTGAACT 59.906 34.615 1.13 0.00 0.00 3.01
214 215 6.259638 TGAAAACCACGTCAGTTATTTGAAC 58.740 36.000 1.13 0.00 0.00 3.18
215 216 6.438259 TGAAAACCACGTCAGTTATTTGAA 57.562 33.333 1.13 0.00 0.00 2.69
216 217 6.438259 TTGAAAACCACGTCAGTTATTTGA 57.562 33.333 1.13 0.00 0.00 2.69
217 218 7.274686 AGTTTTGAAAACCACGTCAGTTATTTG 59.725 33.333 16.45 0.00 0.00 2.32
218 219 7.274686 CAGTTTTGAAAACCACGTCAGTTATTT 59.725 33.333 16.45 0.00 0.00 1.40
219 220 6.750039 CAGTTTTGAAAACCACGTCAGTTATT 59.250 34.615 16.45 0.00 0.00 1.40
220 221 6.094325 TCAGTTTTGAAAACCACGTCAGTTAT 59.906 34.615 16.45 0.00 0.00 1.89
221 222 5.411977 TCAGTTTTGAAAACCACGTCAGTTA 59.588 36.000 16.45 0.00 0.00 2.24
222 223 4.216687 TCAGTTTTGAAAACCACGTCAGTT 59.783 37.500 16.45 0.00 0.00 3.16
223 224 3.754323 TCAGTTTTGAAAACCACGTCAGT 59.246 39.130 16.45 0.00 0.00 3.41
224 225 4.349663 TCAGTTTTGAAAACCACGTCAG 57.650 40.909 16.45 0.32 0.00 3.51
225 226 4.216687 AGTTCAGTTTTGAAAACCACGTCA 59.783 37.500 16.45 0.00 44.49 4.35
226 227 4.729595 AGTTCAGTTTTGAAAACCACGTC 58.270 39.130 16.45 5.17 44.49 4.34
227 228 4.776795 AGTTCAGTTTTGAAAACCACGT 57.223 36.364 16.45 0.00 44.49 4.49
228 229 7.327518 AGTTTTAGTTCAGTTTTGAAAACCACG 59.672 33.333 16.45 6.65 44.49 4.94
229 230 8.528917 AGTTTTAGTTCAGTTTTGAAAACCAC 57.471 30.769 16.45 11.17 44.49 4.16
230 231 9.628746 GTAGTTTTAGTTCAGTTTTGAAAACCA 57.371 29.630 16.45 1.81 44.49 3.67
231 232 8.791605 CGTAGTTTTAGTTCAGTTTTGAAAACC 58.208 33.333 16.45 2.31 44.49 3.27
232 233 9.333497 ACGTAGTTTTAGTTCAGTTTTGAAAAC 57.667 29.630 12.62 12.62 41.36 2.43
252 253 8.746623 CTCCGTTCGGAAATAACTGACGTAGT 62.747 46.154 14.79 0.00 37.36 2.73
253 254 3.545078 CCGTTCGGAAATAACTGACGTAG 59.455 47.826 5.19 0.00 0.00 3.51
254 255 3.190327 TCCGTTCGGAAATAACTGACGTA 59.810 43.478 11.66 0.00 0.00 3.57
255 256 2.030007 TCCGTTCGGAAATAACTGACGT 60.030 45.455 11.66 0.00 0.00 4.34
256 257 2.597305 CTCCGTTCGGAAATAACTGACG 59.403 50.000 14.79 0.00 33.41 4.35
257 258 2.928116 CCTCCGTTCGGAAATAACTGAC 59.072 50.000 14.79 0.00 33.41 3.51
258 259 2.093869 CCCTCCGTTCGGAAATAACTGA 60.094 50.000 14.79 0.00 33.41 3.41
259 260 2.093869 TCCCTCCGTTCGGAAATAACTG 60.094 50.000 14.79 1.97 33.41 3.16
260 261 2.167900 CTCCCTCCGTTCGGAAATAACT 59.832 50.000 14.79 0.00 33.41 2.24
261 262 2.093816 ACTCCCTCCGTTCGGAAATAAC 60.094 50.000 14.79 0.00 33.41 1.89
262 263 2.181975 ACTCCCTCCGTTCGGAAATAA 58.818 47.619 14.79 1.25 33.41 1.40
263 264 1.856629 ACTCCCTCCGTTCGGAAATA 58.143 50.000 14.79 2.82 33.41 1.40
264 265 1.856629 TACTCCCTCCGTTCGGAAAT 58.143 50.000 14.79 2.39 33.41 2.17
265 266 1.479323 CATACTCCCTCCGTTCGGAAA 59.521 52.381 14.79 3.49 33.41 3.13
266 267 1.108776 CATACTCCCTCCGTTCGGAA 58.891 55.000 14.79 0.00 33.41 4.30
267 268 0.033796 ACATACTCCCTCCGTTCGGA 60.034 55.000 13.34 13.34 0.00 4.55
268 269 0.822164 AACATACTCCCTCCGTTCGG 59.178 55.000 4.74 4.74 0.00 4.30
269 270 1.203994 ACAACATACTCCCTCCGTTCG 59.796 52.381 0.00 0.00 0.00 3.95
270 271 3.698040 TCTACAACATACTCCCTCCGTTC 59.302 47.826 0.00 0.00 0.00 3.95
271 272 3.705051 TCTACAACATACTCCCTCCGTT 58.295 45.455 0.00 0.00 0.00 4.44
272 273 3.377253 TCTACAACATACTCCCTCCGT 57.623 47.619 0.00 0.00 0.00 4.69
273 274 3.068307 CCTTCTACAACATACTCCCTCCG 59.932 52.174 0.00 0.00 0.00 4.63
274 275 4.287552 TCCTTCTACAACATACTCCCTCC 58.712 47.826 0.00 0.00 0.00 4.30
275 276 5.364157 ACATCCTTCTACAACATACTCCCTC 59.636 44.000 0.00 0.00 0.00 4.30
276 277 5.281314 ACATCCTTCTACAACATACTCCCT 58.719 41.667 0.00 0.00 0.00 4.20
277 278 5.615925 ACATCCTTCTACAACATACTCCC 57.384 43.478 0.00 0.00 0.00 4.30
278 279 6.640518 TCAACATCCTTCTACAACATACTCC 58.359 40.000 0.00 0.00 0.00 3.85
279 280 8.723942 ATTCAACATCCTTCTACAACATACTC 57.276 34.615 0.00 0.00 0.00 2.59
280 281 9.520515 AAATTCAACATCCTTCTACAACATACT 57.479 29.630 0.00 0.00 0.00 2.12
281 282 9.774742 GAAATTCAACATCCTTCTACAACATAC 57.225 33.333 0.00 0.00 0.00 2.39
282 283 8.664798 CGAAATTCAACATCCTTCTACAACATA 58.335 33.333 0.00 0.00 0.00 2.29
283 284 7.530010 CGAAATTCAACATCCTTCTACAACAT 58.470 34.615 0.00 0.00 0.00 2.71
284 285 6.567701 GCGAAATTCAACATCCTTCTACAACA 60.568 38.462 0.00 0.00 0.00 3.33
285 286 5.795441 GCGAAATTCAACATCCTTCTACAAC 59.205 40.000 0.00 0.00 0.00 3.32
286 287 5.106317 GGCGAAATTCAACATCCTTCTACAA 60.106 40.000 0.00 0.00 0.00 2.41
287 288 4.394920 GGCGAAATTCAACATCCTTCTACA 59.605 41.667 0.00 0.00 0.00 2.74
288 289 4.201920 GGGCGAAATTCAACATCCTTCTAC 60.202 45.833 0.00 0.00 0.00 2.59
295 296 3.848272 TCTTGGGCGAAATTCAACATC 57.152 42.857 0.00 0.00 0.00 3.06
326 327 8.877779 CAAGAGATTTTCGAGATAGTCATGTTT 58.122 33.333 0.00 0.00 0.00 2.83
328 329 6.983307 CCAAGAGATTTTCGAGATAGTCATGT 59.017 38.462 0.00 0.00 0.00 3.21
329 330 7.168972 GTCCAAGAGATTTTCGAGATAGTCATG 59.831 40.741 0.00 0.00 0.00 3.07
330 331 7.147828 TGTCCAAGAGATTTTCGAGATAGTCAT 60.148 37.037 0.00 0.00 0.00 3.06
331 332 6.152831 TGTCCAAGAGATTTTCGAGATAGTCA 59.847 38.462 0.00 0.00 0.00 3.41
332 333 6.565234 TGTCCAAGAGATTTTCGAGATAGTC 58.435 40.000 0.00 0.00 0.00 2.59
333 334 6.531503 TGTCCAAGAGATTTTCGAGATAGT 57.468 37.500 0.00 0.00 0.00 2.12
334 335 7.009999 CACTTGTCCAAGAGATTTTCGAGATAG 59.990 40.741 13.69 0.00 40.79 2.08
335 336 6.813649 CACTTGTCCAAGAGATTTTCGAGATA 59.186 38.462 13.69 0.00 40.79 1.98
336 337 5.641209 CACTTGTCCAAGAGATTTTCGAGAT 59.359 40.000 13.69 0.00 40.79 2.75
337 338 4.991056 CACTTGTCCAAGAGATTTTCGAGA 59.009 41.667 13.69 0.00 40.79 4.04
338 339 4.377841 GCACTTGTCCAAGAGATTTTCGAG 60.378 45.833 13.69 0.00 40.79 4.04
339 340 3.498397 GCACTTGTCCAAGAGATTTTCGA 59.502 43.478 13.69 0.00 40.79 3.71
346 347 0.249868 CCGTGCACTTGTCCAAGAGA 60.250 55.000 16.19 0.00 40.79 3.10
349 350 2.260869 CCCCGTGCACTTGTCCAAG 61.261 63.158 16.19 5.51 43.79 3.61
364 365 2.040412 AGAGAAAACAGATGACACCCCC 59.960 50.000 0.00 0.00 0.00 5.40
365 366 3.425162 AGAGAAAACAGATGACACCCC 57.575 47.619 0.00 0.00 0.00 4.95
367 368 8.787852 AGAAATAAAGAGAAAACAGATGACACC 58.212 33.333 0.00 0.00 0.00 4.16
373 375 8.940397 TGGGAAGAAATAAAGAGAAAACAGAT 57.060 30.769 0.00 0.00 0.00 2.90
393 395 4.441792 CATCACATCGTAATGACTGGGAA 58.558 43.478 0.00 0.00 36.67 3.97
394 396 3.181466 CCATCACATCGTAATGACTGGGA 60.181 47.826 0.00 0.00 36.67 4.37
395 397 3.133691 CCATCACATCGTAATGACTGGG 58.866 50.000 0.00 0.00 36.67 4.45
396 398 3.797039 ACCATCACATCGTAATGACTGG 58.203 45.455 0.00 0.00 36.67 4.00
397 399 5.348164 TGTACCATCACATCGTAATGACTG 58.652 41.667 0.00 0.00 36.67 3.51
398 400 5.592104 TGTACCATCACATCGTAATGACT 57.408 39.130 0.00 0.00 36.67 3.41
399 401 6.453643 GATGTACCATCACATCGTAATGAC 57.546 41.667 0.86 0.00 43.84 3.06
408 410 5.744171 TGCTGTTAAGATGTACCATCACAT 58.256 37.500 6.96 0.00 41.83 3.21
409 411 5.159273 TGCTGTTAAGATGTACCATCACA 57.841 39.130 6.96 2.32 0.00 3.58
410 412 6.094048 ACAATGCTGTTAAGATGTACCATCAC 59.906 38.462 6.96 0.00 28.57 3.06
411 413 6.093909 CACAATGCTGTTAAGATGTACCATCA 59.906 38.462 6.96 0.00 31.64 3.07
412 414 6.489675 CACAATGCTGTTAAGATGTACCATC 58.510 40.000 0.00 0.00 31.64 3.51
413 415 5.163622 GCACAATGCTGTTAAGATGTACCAT 60.164 40.000 0.00 0.00 40.96 3.55
414 416 4.155826 GCACAATGCTGTTAAGATGTACCA 59.844 41.667 0.00 0.00 40.96 3.25
415 417 4.438744 GGCACAATGCTGTTAAGATGTACC 60.439 45.833 0.13 0.00 44.28 3.34
416 418 4.396166 AGGCACAATGCTGTTAAGATGTAC 59.604 41.667 0.13 0.00 44.28 2.90
417 419 4.395854 CAGGCACAATGCTGTTAAGATGTA 59.604 41.667 0.13 0.00 44.28 2.29
418 420 3.192001 CAGGCACAATGCTGTTAAGATGT 59.808 43.478 0.13 0.00 44.28 3.06
419 421 3.766151 CAGGCACAATGCTGTTAAGATG 58.234 45.455 0.13 0.00 44.28 2.90
420 422 2.165030 GCAGGCACAATGCTGTTAAGAT 59.835 45.455 0.13 0.00 44.28 2.40
421 423 1.541147 GCAGGCACAATGCTGTTAAGA 59.459 47.619 0.13 0.00 44.28 2.10
422 424 1.986698 GCAGGCACAATGCTGTTAAG 58.013 50.000 0.13 0.00 44.28 1.85
429 431 2.023673 TGGTATAAGCAGGCACAATGC 58.976 47.619 0.00 0.00 44.08 3.56
430 432 3.254166 GGATGGTATAAGCAGGCACAATG 59.746 47.826 0.00 0.00 0.00 2.82
431 433 3.139025 AGGATGGTATAAGCAGGCACAAT 59.861 43.478 0.00 0.00 0.00 2.71
463 465 8.897872 TGAGAGTTTTTCCTTTTACTACGAAT 57.102 30.769 0.00 0.00 0.00 3.34
466 468 9.382244 CAAATGAGAGTTTTTCCTTTTACTACG 57.618 33.333 0.00 0.00 0.00 3.51
476 478 5.164233 GCTTAGCCAAATGAGAGTTTTTCC 58.836 41.667 0.00 0.00 0.00 3.13
478 480 5.789643 TGCTTAGCCAAATGAGAGTTTTT 57.210 34.783 0.29 0.00 0.00 1.94
485 487 4.110482 GCAGAAATGCTTAGCCAAATGAG 58.890 43.478 0.29 0.00 0.00 2.90
524 532 6.292703 GCAACTTTAACTCGAGAAGCAGTAAA 60.293 38.462 21.68 11.41 0.00 2.01
525 533 5.176958 GCAACTTTAACTCGAGAAGCAGTAA 59.823 40.000 21.68 4.63 0.00 2.24
526 534 4.684703 GCAACTTTAACTCGAGAAGCAGTA 59.315 41.667 21.68 0.00 0.00 2.74
540 548 3.797184 GCAAATGGTCACGGCAACTTTAA 60.797 43.478 0.00 0.00 0.00 1.52
545 553 0.038343 ATGCAAATGGTCACGGCAAC 60.038 50.000 0.00 0.00 38.08 4.17
549 557 1.815613 TGGTAATGCAAATGGTCACGG 59.184 47.619 0.00 0.00 0.00 4.94
551 559 3.784338 CCATGGTAATGCAAATGGTCAC 58.216 45.455 2.57 0.00 35.78 3.67
569 577 3.382546 GCAACAAGAATCTACCATGCCAT 59.617 43.478 0.00 0.00 0.00 4.40
587 595 3.451141 TCCAACAGTGAAAATGGCAAC 57.549 42.857 0.00 0.00 35.33 4.17
588 596 4.630111 GATTCCAACAGTGAAAATGGCAA 58.370 39.130 0.00 0.00 35.33 4.52
625 693 6.072508 TCAGAGTTCCATGTTATCTTGTTTGC 60.073 38.462 0.00 0.00 0.00 3.68
626 694 7.439157 TCAGAGTTCCATGTTATCTTGTTTG 57.561 36.000 0.00 0.00 0.00 2.93
627 695 8.463930 TTTCAGAGTTCCATGTTATCTTGTTT 57.536 30.769 0.00 0.00 0.00 2.83
635 703 7.554118 GGATTCAGATTTCAGAGTTCCATGTTA 59.446 37.037 0.00 0.00 0.00 2.41
688 756 2.290641 GGTTACATAGCTGCGAAATGGG 59.709 50.000 14.22 0.00 0.00 4.00
692 760 2.373540 ACGGTTACATAGCTGCGAAA 57.626 45.000 0.00 0.00 0.00 3.46
696 764 6.592798 TTTGTAATACGGTTACATAGCTGC 57.407 37.500 13.97 0.00 35.15 5.25
726 795 9.692749 GAAAATGCAGATGAATGTATCAATCAT 57.307 29.630 0.00 0.71 42.54 2.45
808 877 4.634004 CGTTTATGTTGCCATCCTTCACTA 59.366 41.667 0.00 0.00 32.29 2.74
877 946 6.714356 TCTCAATGATCATGTGTGGTTTGTTA 59.286 34.615 9.46 0.00 0.00 2.41
977 1066 4.937620 TGATTTCTGCATCCTTGTGTACTC 59.062 41.667 0.00 0.00 0.00 2.59
999 1096 2.224079 GTGTGTGCCTGTGTAATGTCTG 59.776 50.000 0.00 0.00 0.00 3.51
1026 1123 3.305950 GCAAGAGAGCTCAAGAGTCAAGA 60.306 47.826 17.77 0.00 0.00 3.02
1033 1130 1.065636 CCATGGCAAGAGAGCTCAAGA 60.066 52.381 17.77 0.00 34.17 3.02
1034 1131 1.380524 CCATGGCAAGAGAGCTCAAG 58.619 55.000 17.77 3.41 34.17 3.02
1035 1132 0.679002 GCCATGGCAAGAGAGCTCAA 60.679 55.000 32.08 0.00 41.49 3.02
1487 1587 3.358076 GAGCCGGACGGTCTTCCAG 62.358 68.421 5.05 0.00 35.04 3.86
1558 1661 2.825836 GCGCTTGGTCCATGGGAG 60.826 66.667 21.81 6.45 29.39 4.30
1559 1662 4.776322 CGCGCTTGGTCCATGGGA 62.776 66.667 21.81 0.00 0.00 4.37
1561 1664 3.499737 GACGCGCTTGGTCCATGG 61.500 66.667 5.73 4.97 0.00 3.66
1562 1665 3.853330 CGACGCGCTTGGTCCATG 61.853 66.667 5.73 0.00 0.00 3.66
1563 1666 2.495366 TAACGACGCGCTTGGTCCAT 62.495 55.000 5.73 0.00 0.00 3.41
1564 1667 3.210223 TAACGACGCGCTTGGTCCA 62.210 57.895 5.73 0.00 0.00 4.02
1684 1790 7.805071 GCACATATTCAACATTATTGTAGGCTC 59.195 37.037 0.00 0.00 34.06 4.70
1726 1848 6.598850 CCAAAGCCAGGCAACATATTATTTTT 59.401 34.615 15.80 0.00 41.41 1.94
1727 1849 6.114767 CCAAAGCCAGGCAACATATTATTTT 58.885 36.000 15.80 0.00 41.41 1.82
1788 1910 1.569479 GCGGGACAGCAGTTCTGAAC 61.569 60.000 12.54 12.54 45.72 3.18
1798 1920 2.129555 ATATGATGGGGCGGGACAGC 62.130 60.000 0.00 0.00 0.00 4.40
1804 1926 4.494091 AAGATCTTATATGATGGGGCGG 57.506 45.455 6.06 0.00 0.00 6.13
1833 1956 5.472301 ACTCCATCCTTCCCATAAATTGT 57.528 39.130 0.00 0.00 0.00 2.71
2489 2641 1.433471 GGCAAGCCATAAAGACGCC 59.567 57.895 6.14 0.00 35.81 5.68
2633 2808 1.065418 AGCCACCGCAGTTTAGCTAAT 60.065 47.619 7.08 0.00 37.52 1.73
2701 2876 4.415596 TGTATTGCTCTTCCCAAAACCAT 58.584 39.130 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.