Multiple sequence alignment - TraesCS3D01G080600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G080600 | chr3D | 100.000 | 4292 | 0 | 0 | 1 | 4292 | 40525644 | 40529935 | 0.000000e+00 | 7926.0 |
1 | TraesCS3D01G080600 | chr3D | 84.245 | 603 | 68 | 13 | 3356 | 3936 | 532128063 | 532127466 | 2.900000e-156 | 562.0 |
2 | TraesCS3D01G080600 | chr3D | 91.213 | 239 | 16 | 5 | 4053 | 4287 | 121909332 | 121909095 | 1.930000e-83 | 320.0 |
3 | TraesCS3D01G080600 | chr3D | 91.176 | 238 | 17 | 4 | 4053 | 4287 | 532126610 | 532126374 | 1.930000e-83 | 320.0 |
4 | TraesCS3D01G080600 | chr3D | 83.607 | 244 | 35 | 3 | 2448 | 2687 | 40504866 | 40505108 | 1.550000e-54 | 224.0 |
5 | TraesCS3D01G080600 | chr3B | 95.221 | 2197 | 87 | 7 | 1170 | 3360 | 64166265 | 64168449 | 0.000000e+00 | 3459.0 |
6 | TraesCS3D01G080600 | chr3B | 89.331 | 956 | 49 | 18 | 245 | 1187 | 64165336 | 64166251 | 0.000000e+00 | 1151.0 |
7 | TraesCS3D01G080600 | chr3B | 91.379 | 232 | 17 | 2 | 1 | 231 | 64165121 | 64165350 | 8.960000e-82 | 315.0 |
8 | TraesCS3D01G080600 | chr5D | 84.950 | 598 | 64 | 13 | 3360 | 3936 | 434312381 | 434311789 | 2.220000e-162 | 582.0 |
9 | TraesCS3D01G080600 | chr5D | 84.874 | 595 | 65 | 11 | 3363 | 3936 | 46993586 | 46992996 | 1.030000e-160 | 577.0 |
10 | TraesCS3D01G080600 | chr5D | 84.757 | 597 | 64 | 12 | 3363 | 3936 | 552449764 | 552449172 | 1.340000e-159 | 573.0 |
11 | TraesCS3D01G080600 | chr5D | 91.667 | 240 | 14 | 6 | 4053 | 4287 | 46992139 | 46991901 | 1.150000e-85 | 327.0 |
12 | TraesCS3D01G080600 | chr5D | 91.632 | 239 | 15 | 5 | 4053 | 4287 | 434310932 | 434310695 | 4.140000e-85 | 326.0 |
13 | TraesCS3D01G080600 | chr5D | 91.213 | 239 | 16 | 5 | 4053 | 4287 | 552448314 | 552448077 | 1.930000e-83 | 320.0 |
14 | TraesCS3D01G080600 | chr7D | 85.135 | 592 | 58 | 16 | 3363 | 3930 | 535675815 | 535676400 | 2.880000e-161 | 579.0 |
15 | TraesCS3D01G080600 | chr7D | 83.925 | 535 | 58 | 13 | 3426 | 3936 | 10368927 | 10368397 | 1.790000e-133 | 486.0 |
16 | TraesCS3D01G080600 | chr7D | 91.176 | 238 | 17 | 4 | 4053 | 4287 | 597631952 | 597632188 | 1.930000e-83 | 320.0 |
17 | TraesCS3D01G080600 | chr6D | 84.007 | 594 | 69 | 17 | 3358 | 3930 | 39679749 | 39680337 | 8.110000e-152 | 547.0 |
18 | TraesCS3D01G080600 | chr6D | 83.752 | 597 | 65 | 12 | 3362 | 3936 | 345063444 | 345062858 | 1.760000e-148 | 536.0 |
19 | TraesCS3D01G080600 | chr6D | 91.632 | 239 | 15 | 5 | 4053 | 4287 | 345062003 | 345061766 | 4.140000e-85 | 326.0 |
20 | TraesCS3D01G080600 | chr6D | 91.176 | 238 | 17 | 4 | 4053 | 4287 | 2752084 | 2752320 | 1.930000e-83 | 320.0 |
21 | TraesCS3D01G080600 | chr4D | 86.161 | 448 | 53 | 7 | 3495 | 3936 | 467612310 | 467611866 | 3.880000e-130 | 475.0 |
22 | TraesCS3D01G080600 | chr4D | 91.597 | 238 | 16 | 4 | 4053 | 4287 | 467611007 | 467610771 | 4.140000e-85 | 326.0 |
23 | TraesCS3D01G080600 | chr7A | 77.581 | 339 | 39 | 21 | 3946 | 4260 | 485613452 | 485613127 | 2.050000e-38 | 171.0 |
24 | TraesCS3D01G080600 | chr7A | 84.058 | 69 | 9 | 2 | 1072 | 1139 | 6665709 | 6665776 | 9.960000e-07 | 65.8 |
25 | TraesCS3D01G080600 | chr1D | 87.931 | 116 | 13 | 1 | 2894 | 3009 | 330548112 | 330547998 | 7.490000e-28 | 135.0 |
26 | TraesCS3D01G080600 | chr6A | 94.737 | 57 | 3 | 0 | 2954 | 3010 | 101990539 | 101990483 | 5.910000e-14 | 89.8 |
27 | TraesCS3D01G080600 | chr6A | 92.982 | 57 | 4 | 0 | 3060 | 3116 | 613158936 | 613158880 | 2.750000e-12 | 84.2 |
28 | TraesCS3D01G080600 | chr6A | 92.982 | 57 | 4 | 0 | 3060 | 3116 | 613178279 | 613178223 | 2.750000e-12 | 84.2 |
29 | TraesCS3D01G080600 | chr6A | 92.982 | 57 | 4 | 0 | 3060 | 3116 | 613205892 | 613205836 | 2.750000e-12 | 84.2 |
30 | TraesCS3D01G080600 | chr6A | 92.982 | 57 | 4 | 0 | 3060 | 3116 | 613221501 | 613221445 | 2.750000e-12 | 84.2 |
31 | TraesCS3D01G080600 | chrUn | 86.842 | 76 | 8 | 2 | 3042 | 3116 | 63188230 | 63188304 | 2.750000e-12 | 84.2 |
32 | TraesCS3D01G080600 | chrUn | 92.982 | 57 | 4 | 0 | 3060 | 3116 | 377020876 | 377020820 | 2.750000e-12 | 84.2 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G080600 | chr3D | 40525644 | 40529935 | 4291 | False | 7926.000000 | 7926 | 100.0000 | 1 | 4292 | 1 | chr3D.!!$F2 | 4291 |
1 | TraesCS3D01G080600 | chr3D | 532126374 | 532128063 | 1689 | True | 441.000000 | 562 | 87.7105 | 3356 | 4287 | 2 | chr3D.!!$R2 | 931 |
2 | TraesCS3D01G080600 | chr3B | 64165121 | 64168449 | 3328 | False | 1641.666667 | 3459 | 91.9770 | 1 | 3360 | 3 | chr3B.!!$F1 | 3359 |
3 | TraesCS3D01G080600 | chr5D | 434310695 | 434312381 | 1686 | True | 454.000000 | 582 | 88.2910 | 3360 | 4287 | 2 | chr5D.!!$R2 | 927 |
4 | TraesCS3D01G080600 | chr5D | 46991901 | 46993586 | 1685 | True | 452.000000 | 577 | 88.2705 | 3363 | 4287 | 2 | chr5D.!!$R1 | 924 |
5 | TraesCS3D01G080600 | chr5D | 552448077 | 552449764 | 1687 | True | 446.500000 | 573 | 87.9850 | 3363 | 4287 | 2 | chr5D.!!$R3 | 924 |
6 | TraesCS3D01G080600 | chr7D | 535675815 | 535676400 | 585 | False | 579.000000 | 579 | 85.1350 | 3363 | 3930 | 1 | chr7D.!!$F1 | 567 |
7 | TraesCS3D01G080600 | chr7D | 10368397 | 10368927 | 530 | True | 486.000000 | 486 | 83.9250 | 3426 | 3936 | 1 | chr7D.!!$R1 | 510 |
8 | TraesCS3D01G080600 | chr6D | 39679749 | 39680337 | 588 | False | 547.000000 | 547 | 84.0070 | 3358 | 3930 | 1 | chr6D.!!$F2 | 572 |
9 | TraesCS3D01G080600 | chr6D | 345061766 | 345063444 | 1678 | True | 431.000000 | 536 | 87.6920 | 3362 | 4287 | 2 | chr6D.!!$R1 | 925 |
10 | TraesCS3D01G080600 | chr4D | 467610771 | 467612310 | 1539 | True | 400.500000 | 475 | 88.8790 | 3495 | 4287 | 2 | chr4D.!!$R1 | 792 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
700 | 711 | 0.041839 | CGCAGTTGTGTTCAGTCAGC | 60.042 | 55.0 | 0.00 | 0.00 | 0.0 | 4.26 | F |
2289 | 2339 | 0.328592 | TAGACAGACACGAGAGGCCT | 59.671 | 55.0 | 3.86 | 3.86 | 0.0 | 5.19 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2559 | 2609 | 0.676466 | CGCACCTTGGAGGCACAATA | 60.676 | 55.0 | 0.00 | 0.0 | 39.63 | 1.90 | R |
3356 | 3407 | 0.034059 | CCGAAGCAGGCCTCGAATAT | 59.966 | 55.0 | 13.41 | 0.0 | 0.00 | 1.28 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
58 | 59 | 3.836949 | AGCACAAAAGGAATATGCGTTG | 58.163 | 40.909 | 0.00 | 0.00 | 41.23 | 4.10 |
73 | 74 | 1.855978 | GCGTTGGGTTGCTAACAAAAC | 59.144 | 47.619 | 0.00 | 0.00 | 37.58 | 2.43 |
78 | 79 | 3.357203 | TGGGTTGCTAACAAAACAGACA | 58.643 | 40.909 | 0.00 | 0.00 | 37.58 | 3.41 |
89 | 90 | 2.525750 | AAACAGACATATGCGTTGCG | 57.474 | 45.000 | 1.58 | 0.00 | 0.00 | 4.85 |
120 | 121 | 2.584391 | GGAGAGCGTCACAACCCCT | 61.584 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
124 | 125 | 0.320697 | GAGCGTCACAACCCCTACTT | 59.679 | 55.000 | 0.00 | 0.00 | 0.00 | 2.24 |
132 | 133 | 1.351350 | ACAACCCCTACTTGCTCTTCC | 59.649 | 52.381 | 0.00 | 0.00 | 0.00 | 3.46 |
162 | 163 | 6.212791 | AGCCACCGGAATACACTTGTATATAT | 59.787 | 38.462 | 9.46 | 0.00 | 40.10 | 0.86 |
163 | 164 | 7.398047 | AGCCACCGGAATACACTTGTATATATA | 59.602 | 37.037 | 9.46 | 0.00 | 40.10 | 0.86 |
164 | 165 | 7.490402 | GCCACCGGAATACACTTGTATATATAC | 59.510 | 40.741 | 9.46 | 14.86 | 40.10 | 1.47 |
165 | 166 | 8.746530 | CCACCGGAATACACTTGTATATATACT | 58.253 | 37.037 | 20.80 | 5.80 | 40.10 | 2.12 |
166 | 167 | 9.784680 | CACCGGAATACACTTGTATATATACTC | 57.215 | 37.037 | 20.80 | 9.36 | 40.10 | 2.59 |
167 | 168 | 8.964772 | ACCGGAATACACTTGTATATATACTCC | 58.035 | 37.037 | 20.80 | 15.45 | 40.10 | 3.85 |
190 | 191 | 2.879462 | GCAAGAGGTACGTCGCCG | 60.879 | 66.667 | 9.77 | 4.16 | 40.83 | 6.46 |
209 | 210 | 3.128589 | GCCGCTTGGAAACTTTATCATCA | 59.871 | 43.478 | 0.00 | 0.00 | 33.02 | 3.07 |
213 | 214 | 6.349280 | CCGCTTGGAAACTTTATCATCAAGAA | 60.349 | 38.462 | 0.00 | 0.00 | 33.96 | 2.52 |
215 | 216 | 7.061094 | CGCTTGGAAACTTTATCATCAAGAAAC | 59.939 | 37.037 | 0.00 | 0.00 | 33.96 | 2.78 |
216 | 217 | 7.867403 | GCTTGGAAACTTTATCATCAAGAAACA | 59.133 | 33.333 | 0.00 | 0.00 | 33.96 | 2.83 |
217 | 218 | 9.403110 | CTTGGAAACTTTATCATCAAGAAACAG | 57.597 | 33.333 | 0.00 | 0.00 | 33.96 | 3.16 |
218 | 219 | 7.885297 | TGGAAACTTTATCATCAAGAAACAGG | 58.115 | 34.615 | 0.00 | 0.00 | 0.00 | 4.00 |
219 | 220 | 7.505585 | TGGAAACTTTATCATCAAGAAACAGGT | 59.494 | 33.333 | 0.00 | 0.00 | 0.00 | 4.00 |
220 | 221 | 9.010029 | GGAAACTTTATCATCAAGAAACAGGTA | 57.990 | 33.333 | 0.00 | 0.00 | 0.00 | 3.08 |
224 | 225 | 8.515414 | ACTTTATCATCAAGAAACAGGTAAAGC | 58.485 | 33.333 | 0.00 | 0.00 | 32.64 | 3.51 |
225 | 226 | 8.635765 | TTTATCATCAAGAAACAGGTAAAGCT | 57.364 | 30.769 | 0.00 | 0.00 | 0.00 | 3.74 |
226 | 227 | 6.749923 | ATCATCAAGAAACAGGTAAAGCTC | 57.250 | 37.500 | 0.00 | 0.00 | 0.00 | 4.09 |
227 | 228 | 5.620206 | TCATCAAGAAACAGGTAAAGCTCA | 58.380 | 37.500 | 0.00 | 0.00 | 0.00 | 4.26 |
228 | 229 | 5.702670 | TCATCAAGAAACAGGTAAAGCTCAG | 59.297 | 40.000 | 0.00 | 0.00 | 0.00 | 3.35 |
229 | 230 | 3.815401 | TCAAGAAACAGGTAAAGCTCAGC | 59.185 | 43.478 | 0.00 | 0.00 | 0.00 | 4.26 |
230 | 231 | 3.778954 | AGAAACAGGTAAAGCTCAGCT | 57.221 | 42.857 | 0.00 | 0.00 | 42.56 | 4.24 |
231 | 232 | 3.669536 | AGAAACAGGTAAAGCTCAGCTC | 58.330 | 45.455 | 0.00 | 0.00 | 38.25 | 4.09 |
232 | 233 | 3.071602 | AGAAACAGGTAAAGCTCAGCTCA | 59.928 | 43.478 | 0.00 | 0.00 | 38.25 | 4.26 |
233 | 234 | 2.464157 | ACAGGTAAAGCTCAGCTCAC | 57.536 | 50.000 | 0.00 | 0.42 | 38.25 | 3.51 |
234 | 235 | 1.002544 | ACAGGTAAAGCTCAGCTCACC | 59.997 | 52.381 | 18.81 | 18.81 | 38.25 | 4.02 |
235 | 236 | 0.615850 | AGGTAAAGCTCAGCTCACCC | 59.384 | 55.000 | 21.57 | 12.22 | 38.25 | 4.61 |
236 | 237 | 0.741221 | GGTAAAGCTCAGCTCACCCG | 60.741 | 60.000 | 16.52 | 0.00 | 38.25 | 5.28 |
237 | 238 | 1.079127 | TAAAGCTCAGCTCACCCGC | 60.079 | 57.895 | 0.00 | 0.00 | 38.25 | 6.13 |
238 | 239 | 1.826340 | TAAAGCTCAGCTCACCCGCA | 61.826 | 55.000 | 0.00 | 0.00 | 38.25 | 5.69 |
239 | 240 | 2.680974 | AAAGCTCAGCTCACCCGCAA | 62.681 | 55.000 | 0.00 | 0.00 | 38.25 | 4.85 |
240 | 241 | 2.669569 | GCTCAGCTCACCCGCAAA | 60.670 | 61.111 | 0.00 | 0.00 | 0.00 | 3.68 |
241 | 242 | 2.260869 | GCTCAGCTCACCCGCAAAA | 61.261 | 57.895 | 0.00 | 0.00 | 0.00 | 2.44 |
242 | 243 | 1.795170 | GCTCAGCTCACCCGCAAAAA | 61.795 | 55.000 | 0.00 | 0.00 | 0.00 | 1.94 |
359 | 364 | 4.102649 | CAAAAAGACGTTGGACTTTGGAC | 58.897 | 43.478 | 1.20 | 0.00 | 38.00 | 4.02 |
368 | 373 | 5.699458 | ACGTTGGACTTTGGACTAATACAAG | 59.301 | 40.000 | 0.00 | 0.00 | 27.47 | 3.16 |
390 | 395 | 2.046285 | CACCGCATTCAAGGGTCCC | 61.046 | 63.158 | 0.00 | 0.00 | 29.82 | 4.46 |
442 | 447 | 2.607457 | CGTTAAACACGGTGCCTCA | 58.393 | 52.632 | 8.30 | 0.00 | 45.89 | 3.86 |
489 | 497 | 0.179233 | GCGTTTCTTCCCGCGTTAAG | 60.179 | 55.000 | 4.92 | 8.40 | 40.56 | 1.85 |
508 | 516 | 1.607801 | GGGGGACAAATCAAGCTGCC | 61.608 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
533 | 541 | 3.104512 | TCCATCATTGGTTCTACCGTCT | 58.895 | 45.455 | 0.00 | 0.00 | 42.58 | 4.18 |
586 | 594 | 2.254152 | TTCTCCAGAGGTATGTGCCT | 57.746 | 50.000 | 0.00 | 0.00 | 42.53 | 4.75 |
591 | 599 | 1.645034 | CAGAGGTATGTGCCTTGTCG | 58.355 | 55.000 | 0.00 | 0.00 | 39.34 | 4.35 |
619 | 627 | 1.277842 | TGCTCTATTTTCAGGCGTGGA | 59.722 | 47.619 | 6.56 | 0.00 | 0.00 | 4.02 |
622 | 630 | 2.939103 | CTCTATTTTCAGGCGTGGAAGG | 59.061 | 50.000 | 6.56 | 0.00 | 0.00 | 3.46 |
628 | 636 | 0.904865 | TCAGGCGTGGAAGGTCTCAT | 60.905 | 55.000 | 6.56 | 0.00 | 32.25 | 2.90 |
634 | 642 | 3.553096 | GGCGTGGAAGGTCTCATATGTAG | 60.553 | 52.174 | 1.90 | 0.00 | 0.00 | 2.74 |
635 | 643 | 3.643763 | CGTGGAAGGTCTCATATGTAGC | 58.356 | 50.000 | 1.90 | 2.54 | 0.00 | 3.58 |
637 | 645 | 4.202161 | CGTGGAAGGTCTCATATGTAGCTT | 60.202 | 45.833 | 18.59 | 18.59 | 33.89 | 3.74 |
664 | 675 | 3.243334 | CCTCCGATTTCTACCGTCTAACC | 60.243 | 52.174 | 0.00 | 0.00 | 0.00 | 2.85 |
671 | 682 | 5.578005 | TTTCTACCGTCTAACCATCTCAG | 57.422 | 43.478 | 0.00 | 0.00 | 0.00 | 3.35 |
680 | 691 | 6.540189 | CCGTCTAACCATCTCAGAAATTTCAT | 59.460 | 38.462 | 19.99 | 2.11 | 0.00 | 2.57 |
686 | 697 | 4.334759 | CCATCTCAGAAATTTCATCGCAGT | 59.665 | 41.667 | 19.99 | 0.00 | 0.00 | 4.40 |
687 | 698 | 5.163683 | CCATCTCAGAAATTTCATCGCAGTT | 60.164 | 40.000 | 19.99 | 0.00 | 0.00 | 3.16 |
688 | 699 | 5.287170 | TCTCAGAAATTTCATCGCAGTTG | 57.713 | 39.130 | 19.99 | 7.14 | 0.00 | 3.16 |
689 | 700 | 4.756642 | TCTCAGAAATTTCATCGCAGTTGT | 59.243 | 37.500 | 19.99 | 0.00 | 0.00 | 3.32 |
690 | 701 | 4.786507 | TCAGAAATTTCATCGCAGTTGTG | 58.213 | 39.130 | 19.99 | 5.79 | 0.00 | 3.33 |
691 | 702 | 4.275689 | TCAGAAATTTCATCGCAGTTGTGT | 59.724 | 37.500 | 19.99 | 0.00 | 0.00 | 3.72 |
692 | 703 | 4.977963 | CAGAAATTTCATCGCAGTTGTGTT | 59.022 | 37.500 | 19.99 | 0.00 | 0.00 | 3.32 |
693 | 704 | 5.116074 | CAGAAATTTCATCGCAGTTGTGTTC | 59.884 | 40.000 | 19.99 | 0.00 | 0.00 | 3.18 |
694 | 705 | 4.566545 | AATTTCATCGCAGTTGTGTTCA | 57.433 | 36.364 | 0.00 | 0.00 | 0.00 | 3.18 |
695 | 706 | 3.607422 | TTTCATCGCAGTTGTGTTCAG | 57.393 | 42.857 | 0.00 | 0.00 | 0.00 | 3.02 |
696 | 707 | 2.238942 | TCATCGCAGTTGTGTTCAGT | 57.761 | 45.000 | 0.00 | 0.00 | 0.00 | 3.41 |
697 | 708 | 2.135139 | TCATCGCAGTTGTGTTCAGTC | 58.865 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
698 | 709 | 1.866601 | CATCGCAGTTGTGTTCAGTCA | 59.133 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
699 | 710 | 1.570813 | TCGCAGTTGTGTTCAGTCAG | 58.429 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
700 | 711 | 0.041839 | CGCAGTTGTGTTCAGTCAGC | 60.042 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
701 | 712 | 1.016627 | GCAGTTGTGTTCAGTCAGCA | 58.983 | 50.000 | 0.00 | 0.00 | 0.00 | 4.41 |
702 | 713 | 1.268234 | GCAGTTGTGTTCAGTCAGCAC | 60.268 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
710 | 721 | 2.938451 | TGTTCAGTCAGCACAAGTCTTG | 59.062 | 45.455 | 11.17 | 11.17 | 0.00 | 3.02 |
752 | 763 | 7.128234 | ACTTTGCTCCGTATAAGGGTTTATA | 57.872 | 36.000 | 4.77 | 0.00 | 31.97 | 0.98 |
767 | 778 | 6.708285 | AGGGTTTATATCTCGTGTGTTTTCT | 58.292 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
807 | 819 | 8.617290 | TGGTAACTCTTCCTCTTTTAACATTC | 57.383 | 34.615 | 0.00 | 0.00 | 37.61 | 2.67 |
808 | 820 | 7.664318 | TGGTAACTCTTCCTCTTTTAACATTCC | 59.336 | 37.037 | 0.00 | 0.00 | 37.61 | 3.01 |
825 | 837 | 3.534357 | TTCCCCAAGTTGCCAAATCTA | 57.466 | 42.857 | 0.00 | 0.00 | 0.00 | 1.98 |
829 | 841 | 2.424956 | CCCAAGTTGCCAAATCTAGAGC | 59.575 | 50.000 | 0.00 | 0.00 | 0.00 | 4.09 |
832 | 844 | 3.988976 | AGTTGCCAAATCTAGAGCTCA | 57.011 | 42.857 | 17.77 | 0.82 | 0.00 | 4.26 |
879 | 891 | 6.335471 | TGTTAGAGAACAACAACGATCCTA | 57.665 | 37.500 | 0.00 | 0.00 | 42.66 | 2.94 |
885 | 897 | 5.721232 | AGAACAACAACGATCCTAGGTTAG | 58.279 | 41.667 | 9.08 | 3.35 | 0.00 | 2.34 |
906 | 918 | 4.158384 | AGTTTGCAACGCTTATCATTTCG | 58.842 | 39.130 | 0.00 | 0.00 | 36.23 | 3.46 |
915 | 927 | 2.708514 | CTTATCATTTCGCAAGGCACG | 58.291 | 47.619 | 0.00 | 0.00 | 38.47 | 5.34 |
917 | 929 | 0.676466 | ATCATTTCGCAAGGCACGGA | 60.676 | 50.000 | 0.00 | 0.00 | 38.47 | 4.69 |
950 | 962 | 2.201732 | TCGATCGGCTGCACTAATTTC | 58.798 | 47.619 | 16.41 | 0.00 | 0.00 | 2.17 |
951 | 963 | 1.261619 | CGATCGGCTGCACTAATTTCC | 59.738 | 52.381 | 7.38 | 0.00 | 0.00 | 3.13 |
985 | 997 | 3.458118 | TCTCAACTTGAAACTGGAAGGGA | 59.542 | 43.478 | 0.00 | 0.00 | 39.30 | 4.20 |
1008 | 1020 | 4.111375 | CAGCGAACCTGTAATGTCTACT | 57.889 | 45.455 | 0.00 | 0.00 | 36.79 | 2.57 |
1009 | 1021 | 4.106197 | CAGCGAACCTGTAATGTCTACTC | 58.894 | 47.826 | 0.00 | 0.00 | 36.79 | 2.59 |
1010 | 1022 | 3.762288 | AGCGAACCTGTAATGTCTACTCA | 59.238 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
1011 | 1023 | 3.858238 | GCGAACCTGTAATGTCTACTCAC | 59.142 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
1012 | 1024 | 4.617530 | GCGAACCTGTAATGTCTACTCACA | 60.618 | 45.833 | 0.00 | 0.00 | 0.00 | 3.58 |
1013 | 1025 | 5.651530 | CGAACCTGTAATGTCTACTCACAT | 58.348 | 41.667 | 0.00 | 0.00 | 38.74 | 3.21 |
1014 | 1026 | 5.516696 | CGAACCTGTAATGTCTACTCACATG | 59.483 | 44.000 | 0.00 | 0.00 | 37.07 | 3.21 |
1015 | 1027 | 5.344743 | ACCTGTAATGTCTACTCACATGG | 57.655 | 43.478 | 0.00 | 0.00 | 37.07 | 3.66 |
1016 | 1028 | 5.023452 | ACCTGTAATGTCTACTCACATGGA | 58.977 | 41.667 | 0.00 | 0.00 | 37.07 | 3.41 |
1017 | 1029 | 5.663106 | ACCTGTAATGTCTACTCACATGGAT | 59.337 | 40.000 | 0.00 | 0.00 | 37.07 | 3.41 |
1018 | 1030 | 6.839134 | ACCTGTAATGTCTACTCACATGGATA | 59.161 | 38.462 | 0.00 | 0.00 | 37.07 | 2.59 |
1019 | 1031 | 7.344612 | ACCTGTAATGTCTACTCACATGGATAA | 59.655 | 37.037 | 0.00 | 0.00 | 37.07 | 1.75 |
1020 | 1032 | 8.370940 | CCTGTAATGTCTACTCACATGGATAAT | 58.629 | 37.037 | 0.00 | 0.00 | 37.07 | 1.28 |
1039 | 1051 | 4.524802 | AATATCTTGGATGTGGAGCCAA | 57.475 | 40.909 | 0.00 | 0.00 | 45.60 | 4.52 |
1055 | 1067 | 0.918983 | CCAAGGGCTATGTCCTTCCA | 59.081 | 55.000 | 0.00 | 0.00 | 45.35 | 3.53 |
1060 | 1072 | 2.025887 | AGGGCTATGTCCTTCCACTTTG | 60.026 | 50.000 | 0.00 | 0.00 | 31.15 | 2.77 |
1094 | 1106 | 7.118825 | CACTACAAATGATTTCTCTGAAGAGCA | 59.881 | 37.037 | 2.26 | 0.00 | 41.80 | 4.26 |
1119 | 1131 | 1.303898 | TTGGCCAAGGTGGATATGGA | 58.696 | 50.000 | 16.05 | 0.00 | 40.96 | 3.41 |
1201 | 1246 | 8.328864 | GTCGTCATGACTGATAAATTTAGGAAC | 58.671 | 37.037 | 22.95 | 3.71 | 44.58 | 3.62 |
1204 | 1249 | 8.946085 | GTCATGACTGATAAATTTAGGAACACA | 58.054 | 33.333 | 18.83 | 1.21 | 32.98 | 3.72 |
1205 | 1250 | 9.685276 | TCATGACTGATAAATTTAGGAACACAT | 57.315 | 29.630 | 3.94 | 3.25 | 0.00 | 3.21 |
1208 | 1253 | 9.685276 | TGACTGATAAATTTAGGAACACATCAT | 57.315 | 29.630 | 3.94 | 0.00 | 0.00 | 2.45 |
1219 | 1264 | 8.948631 | TTAGGAACACATCATTCAGATAAGAC | 57.051 | 34.615 | 0.00 | 0.00 | 34.43 | 3.01 |
1220 | 1265 | 6.352516 | AGGAACACATCATTCAGATAAGACC | 58.647 | 40.000 | 0.00 | 0.00 | 34.43 | 3.85 |
1244 | 1289 | 5.358725 | CGCTTGTGTTAATTAATAGGGGGTT | 59.641 | 40.000 | 0.31 | 0.00 | 0.00 | 4.11 |
1372 | 1417 | 8.556194 | TCATCCAAATATTGTACGATTACTTGC | 58.444 | 33.333 | 0.00 | 0.00 | 0.00 | 4.01 |
1395 | 1440 | 5.390991 | GCCTACTGCTATGAACAAGAACAAC | 60.391 | 44.000 | 0.00 | 0.00 | 36.87 | 3.32 |
1415 | 1460 | 8.530269 | AACAACTTCTTATACCGTACAAAGAG | 57.470 | 34.615 | 0.00 | 4.29 | 30.19 | 2.85 |
1419 | 1464 | 8.754230 | ACTTCTTATACCGTACAAAGAGAAAC | 57.246 | 34.615 | 0.00 | 0.00 | 30.19 | 2.78 |
1421 | 1466 | 9.367444 | CTTCTTATACCGTACAAAGAGAAACAT | 57.633 | 33.333 | 0.00 | 0.00 | 30.19 | 2.71 |
1438 | 1483 | 7.439655 | AGAGAAACATATATTTGCTCCTCGAAC | 59.560 | 37.037 | 9.98 | 0.00 | 0.00 | 3.95 |
1446 | 1491 | 2.691409 | TGCTCCTCGAACAATTAGGG | 57.309 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
1457 | 1502 | 4.499019 | CGAACAATTAGGGTGTTGTGCTTT | 60.499 | 41.667 | 0.00 | 0.00 | 39.29 | 3.51 |
1509 | 1554 | 9.905713 | ATCAGTACATTGAAGGTATGTATTTGT | 57.094 | 29.630 | 0.00 | 0.00 | 39.78 | 2.83 |
1781 | 1826 | 3.535561 | AGAAGGAAACGCCAGATGTATG | 58.464 | 45.455 | 0.00 | 0.00 | 40.02 | 2.39 |
2018 | 2068 | 4.202792 | ACAGGGGAGAGATTATATTCGGGA | 60.203 | 45.833 | 0.00 | 0.00 | 0.00 | 5.14 |
2074 | 2124 | 4.608951 | CTGGTAAGCGGAAGTACATCTAC | 58.391 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
2085 | 2135 | 6.511444 | CGGAAGTACATCTACGTTTCCTCTAG | 60.511 | 46.154 | 9.13 | 0.00 | 30.16 | 2.43 |
2088 | 2138 | 4.985538 | ACATCTACGTTTCCTCTAGTGG | 57.014 | 45.455 | 4.35 | 4.35 | 0.00 | 4.00 |
2090 | 2140 | 2.799017 | TCTACGTTTCCTCTAGTGGCA | 58.201 | 47.619 | 5.93 | 0.00 | 0.00 | 4.92 |
2123 | 2173 | 4.221041 | TCGATGTTGTACATGGGTTACTCA | 59.779 | 41.667 | 0.00 | 0.00 | 39.27 | 3.41 |
2155 | 2205 | 5.714806 | AGGTTTGTATTCCATCCAATTTCGT | 59.285 | 36.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2209 | 2259 | 7.425606 | ACAGAAAACTTTGAATGGTATGTCAC | 58.574 | 34.615 | 0.00 | 0.00 | 0.00 | 3.67 |
2289 | 2339 | 0.328592 | TAGACAGACACGAGAGGCCT | 59.671 | 55.000 | 3.86 | 3.86 | 0.00 | 5.19 |
2363 | 2413 | 5.513495 | CAGAAGAAGTTCGAGCAGTACATAC | 59.487 | 44.000 | 1.01 | 0.00 | 37.79 | 2.39 |
2541 | 2591 | 3.181469 | GCAACCCCGATAGATACTTGACA | 60.181 | 47.826 | 0.00 | 0.00 | 39.76 | 3.58 |
2543 | 2593 | 4.939052 | ACCCCGATAGATACTTGACAAG | 57.061 | 45.455 | 13.77 | 13.77 | 39.76 | 3.16 |
2546 | 2596 | 4.344102 | CCCCGATAGATACTTGACAAGGAA | 59.656 | 45.833 | 19.16 | 7.48 | 39.76 | 3.36 |
2547 | 2597 | 5.509840 | CCCCGATAGATACTTGACAAGGAAG | 60.510 | 48.000 | 19.16 | 0.00 | 39.76 | 3.46 |
2664 | 2714 | 2.502213 | TCTTCACACTGTACACCACG | 57.498 | 50.000 | 0.00 | 0.00 | 0.00 | 4.94 |
2721 | 2771 | 4.175787 | AGATGTTGTCTCCGTTGAGTAC | 57.824 | 45.455 | 0.00 | 0.00 | 39.75 | 2.73 |
2741 | 2791 | 8.844244 | TGAGTACGACTACTTCTTTAAGAAAGT | 58.156 | 33.333 | 10.69 | 10.69 | 35.31 | 2.66 |
2803 | 2853 | 3.589988 | ACGTTGAAGGTCATCTGTGATC | 58.410 | 45.455 | 0.00 | 0.00 | 36.60 | 2.92 |
2804 | 2854 | 2.600420 | CGTTGAAGGTCATCTGTGATCG | 59.400 | 50.000 | 0.00 | 0.00 | 40.52 | 3.69 |
2805 | 2855 | 3.673323 | CGTTGAAGGTCATCTGTGATCGA | 60.673 | 47.826 | 0.00 | 0.00 | 40.52 | 3.59 |
2820 | 2870 | 2.507110 | ATCGACGACCAGCCACCAAG | 62.507 | 60.000 | 0.00 | 0.00 | 0.00 | 3.61 |
2824 | 2874 | 0.830444 | ACGACCAGCCACCAAGTCTA | 60.830 | 55.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2825 | 2875 | 0.537188 | CGACCAGCCACCAAGTCTAT | 59.463 | 55.000 | 0.00 | 0.00 | 0.00 | 1.98 |
2841 | 2891 | 5.671463 | AGTCTATAGGGAGATCACCTTCA | 57.329 | 43.478 | 13.41 | 0.00 | 39.54 | 3.02 |
2844 | 2894 | 3.715648 | ATAGGGAGATCACCTTCACCT | 57.284 | 47.619 | 13.41 | 2.75 | 39.54 | 4.00 |
2880 | 2930 | 0.684805 | CCTTCGAGAGTAGGGTGCCT | 60.685 | 60.000 | 0.00 | 0.00 | 44.11 | 4.75 |
2899 | 2949 | 6.006449 | GTGCCTATCCATAGAACCAATTGAT | 58.994 | 40.000 | 7.12 | 0.00 | 32.05 | 2.57 |
2905 | 2955 | 9.429359 | CTATCCATAGAACCAATTGATGTACTC | 57.571 | 37.037 | 7.12 | 0.00 | 32.05 | 2.59 |
2925 | 2975 | 5.321927 | ACTCCCTCCGTTCATTTTTGTAAT | 58.678 | 37.500 | 0.00 | 0.00 | 0.00 | 1.89 |
2928 | 2978 | 5.352016 | TCCCTCCGTTCATTTTTGTAATACG | 59.648 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
2981 | 3031 | 7.771183 | ACTGTTCAATTTCAGCTGTCTTAAAA | 58.229 | 30.769 | 14.67 | 6.80 | 35.37 | 1.52 |
3028 | 3078 | 3.643159 | AGAAAGTTTTTCCCGCATCAC | 57.357 | 42.857 | 0.00 | 0.00 | 0.00 | 3.06 |
3039 | 3089 | 1.359848 | CCGCATCACTGTGTCCTAAC | 58.640 | 55.000 | 7.79 | 0.00 | 0.00 | 2.34 |
3040 | 3090 | 1.066858 | CCGCATCACTGTGTCCTAACT | 60.067 | 52.381 | 7.79 | 0.00 | 0.00 | 2.24 |
3041 | 3091 | 2.263077 | CGCATCACTGTGTCCTAACTC | 58.737 | 52.381 | 7.79 | 0.00 | 0.00 | 3.01 |
3042 | 3092 | 2.622436 | GCATCACTGTGTCCTAACTCC | 58.378 | 52.381 | 7.79 | 0.00 | 0.00 | 3.85 |
3043 | 3093 | 2.234908 | GCATCACTGTGTCCTAACTCCT | 59.765 | 50.000 | 7.79 | 0.00 | 0.00 | 3.69 |
3044 | 3094 | 3.447586 | GCATCACTGTGTCCTAACTCCTA | 59.552 | 47.826 | 7.79 | 0.00 | 0.00 | 2.94 |
3045 | 3095 | 4.081642 | GCATCACTGTGTCCTAACTCCTAA | 60.082 | 45.833 | 7.79 | 0.00 | 0.00 | 2.69 |
3056 | 3106 | 6.380274 | TGTCCTAACTCCTAAGTGAACCTATG | 59.620 | 42.308 | 0.00 | 0.00 | 35.36 | 2.23 |
3133 | 3184 | 4.371624 | TTCATGTGTTCTTCCAGTCCAT | 57.628 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
3136 | 3187 | 3.855255 | TGTGTTCTTCCAGTCCATTGA | 57.145 | 42.857 | 0.00 | 0.00 | 0.00 | 2.57 |
3151 | 3202 | 4.762251 | GTCCATTGAGGCAAGTACTTTTCT | 59.238 | 41.667 | 5.07 | 6.29 | 37.29 | 2.52 |
3279 | 3330 | 2.700371 | TCAGCTCCATACATCACCGATT | 59.300 | 45.455 | 0.00 | 0.00 | 0.00 | 3.34 |
3287 | 3338 | 6.587273 | TCCATACATCACCGATTACAATGAA | 58.413 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3333 | 3384 | 0.332972 | ATGAAGGCTTGAACTCCCCC | 59.667 | 55.000 | 3.46 | 0.00 | 0.00 | 5.40 |
3334 | 3385 | 1.065410 | TGAAGGCTTGAACTCCCCCA | 61.065 | 55.000 | 3.46 | 0.00 | 0.00 | 4.96 |
3378 | 3429 | 1.537814 | TTCGAGGCCTGCTTCGGTAA | 61.538 | 55.000 | 21.04 | 8.42 | 44.06 | 2.85 |
3380 | 3431 | 1.359459 | CGAGGCCTGCTTCGGTAAAC | 61.359 | 60.000 | 12.00 | 0.00 | 40.98 | 2.01 |
3408 | 3459 | 1.405797 | CCACAAACCGTATAAGGGCGA | 60.406 | 52.381 | 9.64 | 0.00 | 35.02 | 5.54 |
3412 | 3463 | 4.753107 | CACAAACCGTATAAGGGCGATATT | 59.247 | 41.667 | 9.64 | 0.00 | 35.02 | 1.28 |
3437 | 3488 | 6.254804 | TGTCATTTCATCAAACCGTATAGTCG | 59.745 | 38.462 | 0.00 | 0.00 | 0.00 | 4.18 |
3443 | 3494 | 2.418280 | TCAAACCGTATAGTCGTACGCA | 59.582 | 45.455 | 11.24 | 0.00 | 44.47 | 5.24 |
3470 | 3521 | 5.357032 | TGTGACACATACGAGACATCATACT | 59.643 | 40.000 | 3.56 | 0.00 | 0.00 | 2.12 |
3524 | 3592 | 7.354751 | ACTCAAGACCTCATAGAATAAGGAC | 57.645 | 40.000 | 0.00 | 0.00 | 34.16 | 3.85 |
3525 | 3593 | 6.897966 | ACTCAAGACCTCATAGAATAAGGACA | 59.102 | 38.462 | 0.00 | 0.00 | 34.16 | 4.02 |
3544 | 3612 | 4.457949 | GGACAACCACATTAACCAACTAGG | 59.542 | 45.833 | 0.00 | 0.00 | 38.75 | 3.02 |
3556 | 3624 | 3.951663 | ACCAACTAGGACAACCTAATGC | 58.048 | 45.455 | 0.00 | 0.00 | 46.59 | 3.56 |
3561 | 3629 | 2.514458 | AGGACAACCTAATGCTTGGG | 57.486 | 50.000 | 0.00 | 0.00 | 45.83 | 4.12 |
3574 | 3642 | 4.600692 | ATGCTTGGGTGTTTTTACTTCC | 57.399 | 40.909 | 0.00 | 0.00 | 0.00 | 3.46 |
3601 | 3669 | 4.955811 | TGCTTTCTTCTACTTCAGGTCA | 57.044 | 40.909 | 0.00 | 0.00 | 0.00 | 4.02 |
3628 | 3696 | 1.603236 | GCCGGCCCATTGTTGAATCA | 61.603 | 55.000 | 18.11 | 0.00 | 0.00 | 2.57 |
3634 | 3702 | 3.763897 | GGCCCATTGTTGAATCAGTACTT | 59.236 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
3639 | 3707 | 7.702348 | GCCCATTGTTGAATCAGTACTTTTATC | 59.298 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
3931 | 4007 | 8.873215 | TTTTTCGTTTAAATAGAAACATGCCA | 57.127 | 26.923 | 16.36 | 4.24 | 38.92 | 4.92 |
3943 | 4019 | 4.001248 | ATGCCAACATGACCACGG | 57.999 | 55.556 | 0.00 | 0.00 | 34.35 | 4.94 |
3944 | 4020 | 1.378378 | ATGCCAACATGACCACGGA | 59.622 | 52.632 | 0.00 | 0.00 | 34.35 | 4.69 |
3945 | 4021 | 0.960364 | ATGCCAACATGACCACGGAC | 60.960 | 55.000 | 0.00 | 0.00 | 34.35 | 4.79 |
3946 | 4022 | 2.332654 | GCCAACATGACCACGGACC | 61.333 | 63.158 | 0.00 | 0.00 | 0.00 | 4.46 |
3948 | 4024 | 0.536233 | CCAACATGACCACGGACCAA | 60.536 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
3949 | 4025 | 1.533625 | CAACATGACCACGGACCAAT | 58.466 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3950 | 4026 | 2.616765 | CCAACATGACCACGGACCAATA | 60.617 | 50.000 | 0.00 | 0.00 | 0.00 | 1.90 |
3951 | 4027 | 2.677836 | CAACATGACCACGGACCAATAG | 59.322 | 50.000 | 0.00 | 0.00 | 0.00 | 1.73 |
3952 | 4028 | 1.209504 | ACATGACCACGGACCAATAGG | 59.790 | 52.381 | 0.00 | 0.00 | 42.21 | 2.57 |
3953 | 4029 | 0.837272 | ATGACCACGGACCAATAGGG | 59.163 | 55.000 | 0.00 | 0.00 | 44.81 | 3.53 |
3954 | 4030 | 1.153229 | GACCACGGACCAATAGGGC | 60.153 | 63.158 | 0.00 | 0.00 | 44.93 | 5.19 |
3971 | 4047 | 0.813821 | GGCACCTCTCCTTTTCATGC | 59.186 | 55.000 | 0.00 | 0.00 | 0.00 | 4.06 |
3972 | 4048 | 0.813821 | GCACCTCTCCTTTTCATGCC | 59.186 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
3973 | 4049 | 1.467920 | CACCTCTCCTTTTCATGCCC | 58.532 | 55.000 | 0.00 | 0.00 | 0.00 | 5.36 |
3974 | 4050 | 0.035056 | ACCTCTCCTTTTCATGCCCG | 60.035 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
3975 | 4051 | 1.379642 | CCTCTCCTTTTCATGCCCGC | 61.380 | 60.000 | 0.00 | 0.00 | 0.00 | 6.13 |
3978 | 4054 | 0.171903 | CTCCTTTTCATGCCCGCAAG | 59.828 | 55.000 | 0.00 | 0.00 | 0.00 | 4.01 |
3979 | 4055 | 1.446618 | CCTTTTCATGCCCGCAAGC | 60.447 | 57.895 | 0.00 | 0.00 | 0.00 | 4.01 |
3980 | 4056 | 1.588082 | CTTTTCATGCCCGCAAGCT | 59.412 | 52.632 | 0.00 | 0.00 | 0.00 | 3.74 |
3981 | 4057 | 0.457337 | CTTTTCATGCCCGCAAGCTC | 60.457 | 55.000 | 0.00 | 0.00 | 0.00 | 4.09 |
3983 | 4059 | 1.865788 | TTTCATGCCCGCAAGCTCAC | 61.866 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3987 | 4063 | 2.980233 | GCCCGCAAGCTCACAAGT | 60.980 | 61.111 | 0.00 | 0.00 | 0.00 | 3.16 |
3988 | 4064 | 2.970974 | GCCCGCAAGCTCACAAGTC | 61.971 | 63.158 | 0.00 | 0.00 | 0.00 | 3.01 |
3989 | 4065 | 2.328099 | CCCGCAAGCTCACAAGTCC | 61.328 | 63.158 | 0.00 | 0.00 | 0.00 | 3.85 |
3990 | 4066 | 2.328099 | CCGCAAGCTCACAAGTCCC | 61.328 | 63.158 | 0.00 | 0.00 | 0.00 | 4.46 |
3991 | 4067 | 1.302033 | CGCAAGCTCACAAGTCCCT | 60.302 | 57.895 | 0.00 | 0.00 | 0.00 | 4.20 |
3992 | 4068 | 1.572085 | CGCAAGCTCACAAGTCCCTG | 61.572 | 60.000 | 0.00 | 0.00 | 0.00 | 4.45 |
3997 | 4073 | 1.494721 | AGCTCACAAGTCCCTGGAAAA | 59.505 | 47.619 | 0.00 | 0.00 | 0.00 | 2.29 |
3998 | 4074 | 1.609072 | GCTCACAAGTCCCTGGAAAAC | 59.391 | 52.381 | 0.00 | 0.00 | 0.00 | 2.43 |
4000 | 4076 | 2.618709 | CTCACAAGTCCCTGGAAAACAC | 59.381 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
4001 | 4077 | 2.241176 | TCACAAGTCCCTGGAAAACACT | 59.759 | 45.455 | 0.00 | 0.00 | 0.00 | 3.55 |
4002 | 4078 | 2.618709 | CACAAGTCCCTGGAAAACACTC | 59.381 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4003 | 4079 | 1.873591 | CAAGTCCCTGGAAAACACTCG | 59.126 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
4004 | 4080 | 0.250338 | AGTCCCTGGAAAACACTCGC | 60.250 | 55.000 | 0.00 | 0.00 | 0.00 | 5.03 |
4006 | 4082 | 0.034896 | TCCCTGGAAAACACTCGCTC | 59.965 | 55.000 | 0.00 | 0.00 | 0.00 | 5.03 |
4010 | 4125 | 1.192534 | CTGGAAAACACTCGCTCGTTC | 59.807 | 52.381 | 0.00 | 0.00 | 0.00 | 3.95 |
4011 | 4126 | 1.214367 | GGAAAACACTCGCTCGTTCA | 58.786 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4015 | 4130 | 1.139989 | AACACTCGCTCGTTCATGTG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.21 |
4016 | 4131 | 0.667487 | ACACTCGCTCGTTCATGTGG | 60.667 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
4019 | 4134 | 0.439985 | CTCGCTCGTTCATGTGGTTG | 59.560 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
4020 | 4135 | 0.249699 | TCGCTCGTTCATGTGGTTGT | 60.250 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
4046 | 4161 | 6.576662 | TTTTGTTCGCCATTTCCTAATGTA | 57.423 | 33.333 | 0.00 | 0.00 | 39.62 | 2.29 |
4049 | 4164 | 5.189928 | TGTTCGCCATTTCCTAATGTACAT | 58.810 | 37.500 | 1.41 | 1.41 | 39.62 | 2.29 |
4050 | 4165 | 5.650266 | TGTTCGCCATTTCCTAATGTACATT | 59.350 | 36.000 | 23.80 | 23.80 | 39.62 | 2.71 |
4051 | 4166 | 6.151985 | TGTTCGCCATTTCCTAATGTACATTT | 59.848 | 34.615 | 25.31 | 10.48 | 39.62 | 2.32 |
4097 | 4916 | 8.103935 | AGAAAGAGGAGGGAGTTTAATTACAAG | 58.896 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
4102 | 4921 | 6.940867 | AGGAGGGAGTTTAATTACAAGTTGAC | 59.059 | 38.462 | 10.54 | 0.00 | 0.00 | 3.18 |
4103 | 4922 | 6.150641 | GGAGGGAGTTTAATTACAAGTTGACC | 59.849 | 42.308 | 10.54 | 0.00 | 0.00 | 4.02 |
4110 | 4929 | 9.131791 | AGTTTAATTACAAGTTGACCATTGACT | 57.868 | 29.630 | 10.54 | 9.54 | 0.00 | 3.41 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
8 | 9 | 3.637229 | TCAAGACTCCGTCAACTCTCTTT | 59.363 | 43.478 | 0.00 | 0.00 | 34.60 | 2.52 |
9 | 10 | 3.223435 | TCAAGACTCCGTCAACTCTCTT | 58.777 | 45.455 | 0.00 | 0.00 | 34.60 | 2.85 |
11 | 12 | 2.814919 | TCTCAAGACTCCGTCAACTCTC | 59.185 | 50.000 | 0.00 | 0.00 | 34.60 | 3.20 |
14 | 15 | 1.271102 | GCTCTCAAGACTCCGTCAACT | 59.729 | 52.381 | 0.00 | 0.00 | 34.60 | 3.16 |
58 | 59 | 4.584327 | ATGTCTGTTTTGTTAGCAACCC | 57.416 | 40.909 | 0.00 | 0.00 | 33.82 | 4.11 |
120 | 121 | 4.261801 | GTGGCTTTATGGAAGAGCAAGTA | 58.738 | 43.478 | 0.00 | 0.00 | 37.57 | 2.24 |
124 | 125 | 1.678728 | CGGTGGCTTTATGGAAGAGCA | 60.679 | 52.381 | 0.00 | 0.00 | 37.57 | 4.26 |
132 | 133 | 3.541632 | AGTGTATTCCGGTGGCTTTATG | 58.458 | 45.455 | 0.00 | 0.00 | 0.00 | 1.90 |
162 | 163 | 2.921834 | ACCTCTTGCCTAGTGGAGTA | 57.078 | 50.000 | 10.09 | 0.00 | 39.43 | 2.59 |
163 | 164 | 2.458620 | GTACCTCTTGCCTAGTGGAGT | 58.541 | 52.381 | 10.09 | 0.00 | 39.43 | 3.85 |
164 | 165 | 1.405821 | CGTACCTCTTGCCTAGTGGAG | 59.594 | 57.143 | 10.09 | 0.00 | 39.43 | 3.86 |
165 | 166 | 1.272313 | ACGTACCTCTTGCCTAGTGGA | 60.272 | 52.381 | 10.09 | 0.00 | 39.43 | 4.02 |
166 | 167 | 1.134560 | GACGTACCTCTTGCCTAGTGG | 59.865 | 57.143 | 0.00 | 3.29 | 42.17 | 4.00 |
167 | 168 | 1.202154 | CGACGTACCTCTTGCCTAGTG | 60.202 | 57.143 | 0.00 | 0.00 | 0.00 | 2.74 |
190 | 191 | 7.867403 | TGTTTCTTGATGATAAAGTTTCCAAGC | 59.133 | 33.333 | 0.00 | 0.00 | 32.14 | 4.01 |
209 | 210 | 4.068599 | GAGCTGAGCTTTACCTGTTTCTT | 58.931 | 43.478 | 9.00 | 0.00 | 39.88 | 2.52 |
213 | 214 | 2.551071 | GGTGAGCTGAGCTTTACCTGTT | 60.551 | 50.000 | 25.26 | 0.00 | 39.88 | 3.16 |
215 | 216 | 1.677217 | GGGTGAGCTGAGCTTTACCTG | 60.677 | 57.143 | 28.71 | 0.00 | 42.08 | 4.00 |
216 | 217 | 0.615850 | GGGTGAGCTGAGCTTTACCT | 59.384 | 55.000 | 28.71 | 1.88 | 42.08 | 3.08 |
217 | 218 | 0.741221 | CGGGTGAGCTGAGCTTTACC | 60.741 | 60.000 | 24.82 | 24.82 | 39.88 | 2.85 |
218 | 219 | 1.362406 | GCGGGTGAGCTGAGCTTTAC | 61.362 | 60.000 | 9.00 | 11.23 | 39.88 | 2.01 |
219 | 220 | 1.079127 | GCGGGTGAGCTGAGCTTTA | 60.079 | 57.895 | 9.00 | 0.00 | 39.88 | 1.85 |
220 | 221 | 2.359230 | GCGGGTGAGCTGAGCTTT | 60.359 | 61.111 | 9.00 | 0.00 | 39.88 | 3.51 |
221 | 222 | 2.680974 | TTTGCGGGTGAGCTGAGCTT | 62.681 | 55.000 | 9.00 | 0.00 | 39.88 | 3.74 |
222 | 223 | 2.680974 | TTTTGCGGGTGAGCTGAGCT | 62.681 | 55.000 | 6.69 | 6.69 | 43.88 | 4.09 |
223 | 224 | 1.795170 | TTTTTGCGGGTGAGCTGAGC | 61.795 | 55.000 | 0.00 | 0.00 | 38.13 | 4.26 |
224 | 225 | 2.330254 | TTTTTGCGGGTGAGCTGAG | 58.670 | 52.632 | 0.00 | 0.00 | 38.13 | 3.35 |
225 | 226 | 4.569279 | TTTTTGCGGGTGAGCTGA | 57.431 | 50.000 | 0.00 | 0.00 | 38.13 | 4.26 |
240 | 241 | 4.638304 | TCGTAGCTGAGCTTTACCTTTTT | 58.362 | 39.130 | 14.14 | 0.00 | 40.44 | 1.94 |
241 | 242 | 4.021368 | TCTCGTAGCTGAGCTTTACCTTTT | 60.021 | 41.667 | 14.14 | 0.00 | 40.44 | 2.27 |
242 | 243 | 3.510360 | TCTCGTAGCTGAGCTTTACCTTT | 59.490 | 43.478 | 14.14 | 0.00 | 40.44 | 3.11 |
243 | 244 | 3.090037 | TCTCGTAGCTGAGCTTTACCTT | 58.910 | 45.455 | 14.14 | 0.00 | 40.44 | 3.50 |
321 | 325 | 6.456449 | CGTCTTTTTGTGGTCTTATTATCCGG | 60.456 | 42.308 | 0.00 | 0.00 | 0.00 | 5.14 |
336 | 340 | 3.759618 | TCCAAAGTCCAACGTCTTTTTGT | 59.240 | 39.130 | 0.00 | 0.00 | 32.52 | 2.83 |
337 | 341 | 4.102649 | GTCCAAAGTCCAACGTCTTTTTG | 58.897 | 43.478 | 0.00 | 0.00 | 32.52 | 2.44 |
359 | 364 | 0.107410 | TGCGGTGCCCCTTGTATTAG | 60.107 | 55.000 | 0.00 | 0.00 | 0.00 | 1.73 |
368 | 373 | 3.451894 | CCTTGAATGCGGTGCCCC | 61.452 | 66.667 | 0.00 | 0.00 | 0.00 | 5.80 |
390 | 395 | 1.025812 | TGTTTATAATTGCCGGCCGG | 58.974 | 50.000 | 40.26 | 40.26 | 38.57 | 6.13 |
442 | 447 | 0.474184 | GGGATCGGGTCAACATCCAT | 59.526 | 55.000 | 0.00 | 0.00 | 38.32 | 3.41 |
489 | 497 | 1.607801 | GGCAGCTTGATTTGTCCCCC | 61.608 | 60.000 | 0.00 | 0.00 | 0.00 | 5.40 |
533 | 541 | 1.209261 | TGATGGAATGGAGCAGCGTAA | 59.791 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
586 | 594 | 4.655762 | AATAGAGCAGCTGTATCGACAA | 57.344 | 40.909 | 16.64 | 3.78 | 34.35 | 3.18 |
591 | 599 | 4.213059 | GCCTGAAAATAGAGCAGCTGTATC | 59.787 | 45.833 | 16.64 | 13.82 | 0.00 | 2.24 |
637 | 645 | 4.020839 | AGACGGTAGAAATCGGAGGAAAAA | 60.021 | 41.667 | 0.00 | 0.00 | 0.00 | 1.94 |
657 | 668 | 7.625553 | CGATGAAATTTCTGAGATGGTTAGAC | 58.374 | 38.462 | 18.64 | 0.00 | 0.00 | 2.59 |
664 | 675 | 5.481200 | ACTGCGATGAAATTTCTGAGATG | 57.519 | 39.130 | 18.64 | 8.10 | 0.00 | 2.90 |
671 | 682 | 4.975502 | TGAACACAACTGCGATGAAATTTC | 59.024 | 37.500 | 11.41 | 11.41 | 0.00 | 2.17 |
680 | 691 | 1.570813 | CTGACTGAACACAACTGCGA | 58.429 | 50.000 | 0.00 | 0.00 | 0.00 | 5.10 |
687 | 698 | 2.093500 | AGACTTGTGCTGACTGAACACA | 60.093 | 45.455 | 0.00 | 0.00 | 42.27 | 3.72 |
688 | 699 | 2.555199 | AGACTTGTGCTGACTGAACAC | 58.445 | 47.619 | 0.00 | 0.00 | 33.02 | 3.32 |
689 | 700 | 2.938451 | CAAGACTTGTGCTGACTGAACA | 59.062 | 45.455 | 7.05 | 0.00 | 30.91 | 3.18 |
690 | 701 | 2.939103 | ACAAGACTTGTGCTGACTGAAC | 59.061 | 45.455 | 19.96 | 0.00 | 43.48 | 3.18 |
691 | 702 | 3.266510 | ACAAGACTTGTGCTGACTGAA | 57.733 | 42.857 | 19.96 | 0.00 | 43.48 | 3.02 |
692 | 703 | 2.988010 | ACAAGACTTGTGCTGACTGA | 57.012 | 45.000 | 19.96 | 0.00 | 43.48 | 3.41 |
693 | 704 | 2.938451 | TGAACAAGACTTGTGCTGACTG | 59.062 | 45.455 | 23.90 | 0.00 | 44.59 | 3.51 |
694 | 705 | 3.266510 | TGAACAAGACTTGTGCTGACT | 57.733 | 42.857 | 23.90 | 7.66 | 44.59 | 3.41 |
695 | 706 | 4.531332 | GAATGAACAAGACTTGTGCTGAC | 58.469 | 43.478 | 23.90 | 12.63 | 44.59 | 3.51 |
696 | 707 | 3.248363 | CGAATGAACAAGACTTGTGCTGA | 59.752 | 43.478 | 23.90 | 8.15 | 44.59 | 4.26 |
697 | 708 | 3.002656 | ACGAATGAACAAGACTTGTGCTG | 59.997 | 43.478 | 23.90 | 14.53 | 44.59 | 4.41 |
698 | 709 | 3.206150 | ACGAATGAACAAGACTTGTGCT | 58.794 | 40.909 | 23.90 | 9.76 | 44.59 | 4.40 |
699 | 710 | 3.609103 | ACGAATGAACAAGACTTGTGC | 57.391 | 42.857 | 21.24 | 19.66 | 44.59 | 4.57 |
700 | 711 | 6.887368 | TGATAACGAATGAACAAGACTTGTG | 58.113 | 36.000 | 21.24 | 10.14 | 44.59 | 3.33 |
702 | 713 | 6.017933 | GCTGATAACGAATGAACAAGACTTG | 58.982 | 40.000 | 13.77 | 13.77 | 0.00 | 3.16 |
705 | 716 | 5.530519 | TGCTGATAACGAATGAACAAGAC | 57.469 | 39.130 | 0.00 | 0.00 | 0.00 | 3.01 |
710 | 721 | 6.602564 | CAAAGTTGCTGATAACGAATGAAC | 57.397 | 37.500 | 0.00 | 0.00 | 35.73 | 3.18 |
734 | 745 | 7.094463 | ACACGAGATATAAACCCTTATACGGAG | 60.094 | 40.741 | 0.00 | 0.00 | 33.72 | 4.63 |
752 | 763 | 2.479837 | TGCGAAGAAAACACACGAGAT | 58.520 | 42.857 | 0.00 | 0.00 | 0.00 | 2.75 |
778 | 789 | 3.686916 | AAGAGGAAGAGTTACCAGCAC | 57.313 | 47.619 | 0.00 | 0.00 | 0.00 | 4.40 |
779 | 790 | 4.706842 | AAAAGAGGAAGAGTTACCAGCA | 57.293 | 40.909 | 0.00 | 0.00 | 0.00 | 4.41 |
780 | 791 | 5.995897 | TGTTAAAAGAGGAAGAGTTACCAGC | 59.004 | 40.000 | 0.00 | 0.00 | 0.00 | 4.85 |
781 | 792 | 8.622948 | AATGTTAAAAGAGGAAGAGTTACCAG | 57.377 | 34.615 | 0.00 | 0.00 | 0.00 | 4.00 |
807 | 819 | 3.019564 | CTCTAGATTTGGCAACTTGGGG | 58.980 | 50.000 | 0.00 | 0.00 | 37.61 | 4.96 |
808 | 820 | 2.424956 | GCTCTAGATTTGGCAACTTGGG | 59.575 | 50.000 | 0.00 | 0.00 | 37.61 | 4.12 |
825 | 837 | 9.434420 | GAGATTTGCAACTATATATTGAGCTCT | 57.566 | 33.333 | 16.19 | 0.00 | 0.00 | 4.09 |
868 | 880 | 4.251268 | GCAAACTAACCTAGGATCGTTGT | 58.749 | 43.478 | 17.98 | 1.99 | 0.00 | 3.32 |
872 | 884 | 3.306166 | CGTTGCAAACTAACCTAGGATCG | 59.694 | 47.826 | 17.98 | 1.67 | 46.99 | 3.69 |
879 | 891 | 4.069304 | TGATAAGCGTTGCAAACTAACCT | 58.931 | 39.130 | 0.00 | 0.00 | 46.99 | 3.50 |
885 | 897 | 3.241333 | GCGAAATGATAAGCGTTGCAAAC | 60.241 | 43.478 | 0.00 | 0.00 | 45.31 | 2.93 |
906 | 918 | 2.596904 | TCTAGTTATCCGTGCCTTGC | 57.403 | 50.000 | 0.00 | 0.00 | 0.00 | 4.01 |
915 | 927 | 5.354792 | AGCCGATCGAGTATTCTAGTTATCC | 59.645 | 44.000 | 18.66 | 0.00 | 0.00 | 2.59 |
917 | 929 | 5.392165 | GCAGCCGATCGAGTATTCTAGTTAT | 60.392 | 44.000 | 18.66 | 0.00 | 0.00 | 1.89 |
950 | 962 | 1.066573 | AGTTGAGAATCTGCTCGTGGG | 60.067 | 52.381 | 0.00 | 0.00 | 37.73 | 4.61 |
951 | 963 | 2.376808 | AGTTGAGAATCTGCTCGTGG | 57.623 | 50.000 | 0.00 | 0.00 | 37.73 | 4.94 |
985 | 997 | 3.402628 | AGACATTACAGGTTCGCTGTT | 57.597 | 42.857 | 0.00 | 0.00 | 36.37 | 3.16 |
1001 | 1013 | 8.588472 | CCAAGATATTATCCATGTGAGTAGACA | 58.412 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
1002 | 1014 | 8.807118 | TCCAAGATATTATCCATGTGAGTAGAC | 58.193 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
1003 | 1015 | 8.956446 | TCCAAGATATTATCCATGTGAGTAGA | 57.044 | 34.615 | 0.00 | 0.00 | 0.00 | 2.59 |
1004 | 1016 | 9.597170 | CATCCAAGATATTATCCATGTGAGTAG | 57.403 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
1005 | 1017 | 9.104713 | ACATCCAAGATATTATCCATGTGAGTA | 57.895 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
1006 | 1018 | 7.881751 | CACATCCAAGATATTATCCATGTGAGT | 59.118 | 37.037 | 19.25 | 8.41 | 41.51 | 3.41 |
1007 | 1019 | 7.336176 | CCACATCCAAGATATTATCCATGTGAG | 59.664 | 40.741 | 22.38 | 14.99 | 41.51 | 3.51 |
1008 | 1020 | 7.017452 | TCCACATCCAAGATATTATCCATGTGA | 59.983 | 37.037 | 22.38 | 13.34 | 41.51 | 3.58 |
1009 | 1021 | 7.170277 | TCCACATCCAAGATATTATCCATGTG | 58.830 | 38.462 | 18.17 | 18.17 | 39.62 | 3.21 |
1010 | 1022 | 7.333779 | TCCACATCCAAGATATTATCCATGT | 57.666 | 36.000 | 0.00 | 2.32 | 0.00 | 3.21 |
1011 | 1023 | 6.318144 | GCTCCACATCCAAGATATTATCCATG | 59.682 | 42.308 | 0.00 | 1.00 | 0.00 | 3.66 |
1012 | 1024 | 6.421485 | GCTCCACATCCAAGATATTATCCAT | 58.579 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1013 | 1025 | 5.280676 | GGCTCCACATCCAAGATATTATCCA | 60.281 | 44.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1014 | 1026 | 5.189180 | GGCTCCACATCCAAGATATTATCC | 58.811 | 45.833 | 0.00 | 0.00 | 0.00 | 2.59 |
1015 | 1027 | 5.809001 | TGGCTCCACATCCAAGATATTATC | 58.191 | 41.667 | 0.00 | 0.00 | 0.00 | 1.75 |
1016 | 1028 | 5.848286 | TGGCTCCACATCCAAGATATTAT | 57.152 | 39.130 | 0.00 | 0.00 | 0.00 | 1.28 |
1017 | 1029 | 5.645056 | TTGGCTCCACATCCAAGATATTA | 57.355 | 39.130 | 0.00 | 0.00 | 37.43 | 0.98 |
1018 | 1030 | 4.524802 | TTGGCTCCACATCCAAGATATT | 57.475 | 40.909 | 0.00 | 0.00 | 37.43 | 1.28 |
1024 | 1036 | 1.383799 | CCCTTGGCTCCACATCCAA | 59.616 | 57.895 | 0.00 | 0.00 | 39.81 | 3.53 |
1039 | 1051 | 1.972588 | AAGTGGAAGGACATAGCCCT | 58.027 | 50.000 | 0.00 | 0.00 | 35.03 | 5.19 |
1047 | 1059 | 4.750598 | GTGTCTCTTACAAAGTGGAAGGAC | 59.249 | 45.833 | 11.73 | 11.73 | 38.83 | 3.85 |
1055 | 1067 | 9.561069 | AATCATTTGTAGTGTCTCTTACAAAGT | 57.439 | 29.630 | 13.22 | 2.95 | 43.01 | 2.66 |
1060 | 1072 | 9.646427 | AGAGAAATCATTTGTAGTGTCTCTTAC | 57.354 | 33.333 | 0.00 | 0.00 | 37.86 | 2.34 |
1094 | 1106 | 0.482446 | TCCACCTTGGCCAATCACTT | 59.518 | 50.000 | 20.85 | 0.00 | 37.47 | 3.16 |
1119 | 1131 | 5.562635 | TCGGACCATACCTTGTAAACAATT | 58.437 | 37.500 | 0.00 | 0.00 | 35.02 | 2.32 |
1193 | 1238 | 9.383519 | GTCTTATCTGAATGATGTGTTCCTAAA | 57.616 | 33.333 | 0.00 | 0.00 | 36.65 | 1.85 |
1201 | 1246 | 4.375272 | AGCGGTCTTATCTGAATGATGTG | 58.625 | 43.478 | 0.00 | 0.00 | 36.65 | 3.21 |
1204 | 1249 | 4.813161 | CACAAGCGGTCTTATCTGAATGAT | 59.187 | 41.667 | 0.00 | 0.00 | 39.11 | 2.45 |
1205 | 1250 | 4.183865 | CACAAGCGGTCTTATCTGAATGA | 58.816 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
1208 | 1253 | 3.678056 | ACACAAGCGGTCTTATCTGAA | 57.322 | 42.857 | 0.00 | 0.00 | 0.00 | 3.02 |
1219 | 1264 | 4.277423 | CCCCCTATTAATTAACACAAGCGG | 59.723 | 45.833 | 0.00 | 0.00 | 0.00 | 5.52 |
1220 | 1265 | 4.885325 | ACCCCCTATTAATTAACACAAGCG | 59.115 | 41.667 | 0.00 | 0.00 | 0.00 | 4.68 |
1244 | 1289 | 0.263468 | TGACCGGTCCATCCCTATCA | 59.737 | 55.000 | 31.19 | 6.67 | 0.00 | 2.15 |
1372 | 1417 | 5.934625 | AGTTGTTCTTGTTCATAGCAGTAGG | 59.065 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1395 | 1440 | 8.752766 | TGTTTCTCTTTGTACGGTATAAGAAG | 57.247 | 34.615 | 13.28 | 8.55 | 0.00 | 2.85 |
1415 | 1460 | 7.246674 | TGTTCGAGGAGCAAATATATGTTTC | 57.753 | 36.000 | 0.00 | 0.00 | 0.00 | 2.78 |
1419 | 1464 | 8.446273 | CCTAATTGTTCGAGGAGCAAATATATG | 58.554 | 37.037 | 0.00 | 0.00 | 36.46 | 1.78 |
1421 | 1466 | 6.934645 | CCCTAATTGTTCGAGGAGCAAATATA | 59.065 | 38.462 | 0.00 | 0.00 | 36.46 | 0.86 |
1438 | 1483 | 4.037923 | ACTCAAAGCACAACACCCTAATTG | 59.962 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
1446 | 1491 | 4.811555 | TCATGTACTCAAAGCACAACAC | 57.188 | 40.909 | 0.00 | 0.00 | 0.00 | 3.32 |
1457 | 1502 | 6.078456 | AGGGATCCATTTTTCATGTACTCA | 57.922 | 37.500 | 15.23 | 0.00 | 0.00 | 3.41 |
1560 | 1605 | 7.014711 | TCCAGAACTAGCATCTATAAAGACAGG | 59.985 | 40.741 | 0.00 | 0.00 | 33.57 | 4.00 |
1570 | 1615 | 4.861196 | ACTGAGTCCAGAACTAGCATCTA | 58.139 | 43.478 | 0.00 | 0.00 | 43.02 | 1.98 |
1657 | 1702 | 7.675161 | TTCATGTGGATAATAGGAGTCTTCA | 57.325 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1720 | 1765 | 5.128827 | AGACCAAAATCAGCTATCTTCGGTA | 59.871 | 40.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1781 | 1826 | 4.202151 | GGGCATTTATCTGACATTGTTCCC | 60.202 | 45.833 | 0.00 | 0.00 | 0.00 | 3.97 |
1846 | 1895 | 6.072728 | TGTCAGTGTAAAACAGATGTATTGGC | 60.073 | 38.462 | 0.00 | 0.00 | 0.00 | 4.52 |
1906 | 1956 | 2.209273 | TGAATTCCGGCGACATGTATG | 58.791 | 47.619 | 9.30 | 0.00 | 0.00 | 2.39 |
2018 | 2068 | 9.911788 | AACCTATCTGAAGACATATCAAAATGT | 57.088 | 29.630 | 0.00 | 0.00 | 42.75 | 2.71 |
2065 | 2115 | 5.732810 | GCCACTAGAGGAAACGTAGATGTAC | 60.733 | 48.000 | 10.79 | 0.00 | 0.00 | 2.90 |
2074 | 2124 | 5.354234 | ACAATTAATGCCACTAGAGGAAACG | 59.646 | 40.000 | 10.79 | 0.00 | 0.00 | 3.60 |
2085 | 2135 | 4.355543 | ACATCGACACAATTAATGCCAC | 57.644 | 40.909 | 0.00 | 0.00 | 0.00 | 5.01 |
2088 | 2138 | 6.310960 | TGTACAACATCGACACAATTAATGC | 58.689 | 36.000 | 0.00 | 0.00 | 0.00 | 3.56 |
2090 | 2140 | 7.415095 | CCCATGTACAACATCGACACAATTAAT | 60.415 | 37.037 | 0.00 | 0.00 | 36.53 | 1.40 |
2123 | 2173 | 8.875168 | TTGGATGGAATACAAACCTTGTAAATT | 58.125 | 29.630 | 3.53 | 0.00 | 46.12 | 1.82 |
2155 | 2205 | 1.202687 | CCTCCATTCTTCATGCGCCTA | 60.203 | 52.381 | 4.18 | 0.00 | 0.00 | 3.93 |
2209 | 2259 | 6.475596 | AATTTGCTGGGAATATCCTTCAAG | 57.524 | 37.500 | 0.00 | 0.00 | 36.57 | 3.02 |
2254 | 2304 | 3.734463 | TGTCTAACTCCACGCATTTGAA | 58.266 | 40.909 | 0.00 | 0.00 | 0.00 | 2.69 |
2256 | 2306 | 3.123621 | GTCTGTCTAACTCCACGCATTTG | 59.876 | 47.826 | 0.00 | 0.00 | 0.00 | 2.32 |
2289 | 2339 | 6.491745 | GCCTATCTATGATATCTCCGATGGAA | 59.508 | 42.308 | 3.98 | 0.00 | 0.00 | 3.53 |
2363 | 2413 | 2.420022 | GAGTGTGTTGAATCAATCCGGG | 59.580 | 50.000 | 0.00 | 0.00 | 0.00 | 5.73 |
2502 | 2552 | 1.167851 | TGCTGGCTACAAGCATGAAC | 58.832 | 50.000 | 0.00 | 0.00 | 44.75 | 3.18 |
2559 | 2609 | 0.676466 | CGCACCTTGGAGGCACAATA | 60.676 | 55.000 | 0.00 | 0.00 | 39.63 | 1.90 |
2664 | 2714 | 2.110213 | TCGTGTTGTCCCACTGCC | 59.890 | 61.111 | 0.00 | 0.00 | 33.07 | 4.85 |
2721 | 2771 | 7.941795 | TTGGACTTTCTTAAAGAAGTAGTCG | 57.058 | 36.000 | 11.85 | 0.00 | 41.35 | 4.18 |
2741 | 2791 | 1.976474 | GCACCGGGCATCTTTTGGA | 60.976 | 57.895 | 6.32 | 0.00 | 43.97 | 3.53 |
2803 | 2853 | 2.738521 | CTTGGTGGCTGGTCGTCG | 60.739 | 66.667 | 0.00 | 0.00 | 0.00 | 5.12 |
2804 | 2854 | 1.668151 | GACTTGGTGGCTGGTCGTC | 60.668 | 63.158 | 0.00 | 0.00 | 0.00 | 4.20 |
2805 | 2855 | 0.830444 | TAGACTTGGTGGCTGGTCGT | 60.830 | 55.000 | 0.00 | 0.00 | 34.56 | 4.34 |
2820 | 2870 | 4.525100 | GGTGAAGGTGATCTCCCTATAGAC | 59.475 | 50.000 | 10.22 | 3.20 | 0.00 | 2.59 |
2824 | 2874 | 3.051803 | TCAGGTGAAGGTGATCTCCCTAT | 60.052 | 47.826 | 10.22 | 0.00 | 34.26 | 2.57 |
2825 | 2875 | 2.314852 | TCAGGTGAAGGTGATCTCCCTA | 59.685 | 50.000 | 10.22 | 0.00 | 34.26 | 3.53 |
2860 | 2910 | 0.683504 | GGCACCCTACTCTCGAAGGA | 60.684 | 60.000 | 2.29 | 0.00 | 34.58 | 3.36 |
2869 | 2919 | 4.161102 | GTTCTATGGATAGGCACCCTACT | 58.839 | 47.826 | 0.00 | 0.00 | 39.10 | 2.57 |
2875 | 2925 | 5.376625 | TCAATTGGTTCTATGGATAGGCAC | 58.623 | 41.667 | 5.42 | 0.00 | 0.00 | 5.01 |
2878 | 2928 | 8.378565 | AGTACATCAATTGGTTCTATGGATAGG | 58.621 | 37.037 | 5.42 | 0.00 | 0.00 | 2.57 |
2880 | 2930 | 8.375506 | GGAGTACATCAATTGGTTCTATGGATA | 58.624 | 37.037 | 5.42 | 0.00 | 0.00 | 2.59 |
2899 | 2949 | 4.069304 | CAAAAATGAACGGAGGGAGTACA | 58.931 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
2905 | 2955 | 5.122711 | ACGTATTACAAAAATGAACGGAGGG | 59.877 | 40.000 | 0.00 | 0.00 | 33.44 | 4.30 |
2925 | 2975 | 8.928733 | GGTATTGTCTTGAATGTCTAAAACGTA | 58.071 | 33.333 | 0.00 | 0.00 | 0.00 | 3.57 |
2948 | 2998 | 7.284489 | ACAGCTGAAATTGAACAGTTTTAGGTA | 59.716 | 33.333 | 23.35 | 0.00 | 34.12 | 3.08 |
2981 | 3031 | 9.574516 | ACTTCCTATGTTCATTTTTGTAAGTCT | 57.425 | 29.630 | 0.00 | 0.00 | 0.00 | 3.24 |
3000 | 3050 | 4.999311 | GCGGGAAAAACTTTCTACTTCCTA | 59.001 | 41.667 | 0.00 | 0.00 | 36.57 | 2.94 |
3004 | 3054 | 4.825085 | TGATGCGGGAAAAACTTTCTACTT | 59.175 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
3005 | 3055 | 4.215613 | GTGATGCGGGAAAAACTTTCTACT | 59.784 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
3028 | 3078 | 5.471257 | GTTCACTTAGGAGTTAGGACACAG | 58.529 | 45.833 | 0.00 | 0.00 | 32.54 | 3.66 |
3063 | 3113 | 2.474816 | GTTGGTATCGCTAGCCTTCTG | 58.525 | 52.381 | 9.66 | 0.00 | 0.00 | 3.02 |
3074 | 3124 | 0.655733 | GTTGGCCATCGTTGGTATCG | 59.344 | 55.000 | 6.09 | 0.00 | 45.57 | 2.92 |
3126 | 3177 | 3.340814 | AGTACTTGCCTCAATGGACTG | 57.659 | 47.619 | 0.00 | 0.00 | 38.35 | 3.51 |
3133 | 3184 | 5.678616 | GCACAAAGAAAAGTACTTGCCTCAA | 60.679 | 40.000 | 9.34 | 0.00 | 0.00 | 3.02 |
3136 | 3187 | 3.699038 | TGCACAAAGAAAAGTACTTGCCT | 59.301 | 39.130 | 9.34 | 6.54 | 0.00 | 4.75 |
3151 | 3202 | 6.682746 | TCAAAAGAGTGTTTAACTGCACAAA | 58.317 | 32.000 | 0.00 | 0.00 | 40.07 | 2.83 |
3188 | 3239 | 5.340027 | GGACTCCCCAAAATAGAAGATTCCA | 60.340 | 44.000 | 0.00 | 0.00 | 34.14 | 3.53 |
3203 | 3254 | 3.655777 | AGAAAATAAGTGTGGACTCCCCA | 59.344 | 43.478 | 0.00 | 0.00 | 44.25 | 4.96 |
3279 | 3330 | 7.560991 | ACCTGCATCCTGATTTATTTCATTGTA | 59.439 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
3287 | 3338 | 6.211184 | TCAAACAACCTGCATCCTGATTTATT | 59.789 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
3356 | 3407 | 0.034059 | CCGAAGCAGGCCTCGAATAT | 59.966 | 55.000 | 13.41 | 0.00 | 0.00 | 1.28 |
3412 | 3463 | 6.254804 | CGACTATACGGTTTGATGAAATGACA | 59.745 | 38.462 | 0.00 | 0.00 | 0.00 | 3.58 |
3434 | 3485 | 2.521996 | TGTGTCACATATGCGTACGAC | 58.478 | 47.619 | 21.65 | 11.11 | 0.00 | 4.34 |
3437 | 3488 | 4.284485 | TCGTATGTGTCACATATGCGTAC | 58.716 | 43.478 | 29.13 | 17.80 | 44.02 | 3.67 |
3443 | 3494 | 6.391227 | TGATGTCTCGTATGTGTCACATAT | 57.609 | 37.500 | 24.80 | 11.06 | 42.39 | 1.78 |
3497 | 3565 | 9.488762 | TCCTTATTCTATGAGGTCTTGAGTTTA | 57.511 | 33.333 | 0.00 | 0.00 | 37.33 | 2.01 |
3512 | 3580 | 8.333235 | TGGTTAATGTGGTTGTCCTTATTCTAT | 58.667 | 33.333 | 0.00 | 0.00 | 34.23 | 1.98 |
3514 | 3582 | 6.548321 | TGGTTAATGTGGTTGTCCTTATTCT | 58.452 | 36.000 | 0.00 | 0.00 | 34.23 | 2.40 |
3516 | 3584 | 6.780522 | AGTTGGTTAATGTGGTTGTCCTTATT | 59.219 | 34.615 | 0.00 | 0.00 | 34.23 | 1.40 |
3517 | 3585 | 6.311735 | AGTTGGTTAATGTGGTTGTCCTTAT | 58.688 | 36.000 | 0.00 | 0.00 | 34.23 | 1.73 |
3524 | 3592 | 5.067273 | TGTCCTAGTTGGTTAATGTGGTTG | 58.933 | 41.667 | 0.00 | 0.00 | 37.07 | 3.77 |
3525 | 3593 | 5.313280 | TGTCCTAGTTGGTTAATGTGGTT | 57.687 | 39.130 | 0.00 | 0.00 | 37.07 | 3.67 |
3581 | 3649 | 3.675698 | CGTGACCTGAAGTAGAAGAAAGC | 59.324 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
3582 | 3650 | 4.238514 | CCGTGACCTGAAGTAGAAGAAAG | 58.761 | 47.826 | 0.00 | 0.00 | 0.00 | 2.62 |
3887 | 3963 | 9.762062 | ACGAAAAATAAACAACCATTTTTGTTC | 57.238 | 25.926 | 9.13 | 0.00 | 46.68 | 3.18 |
3908 | 3984 | 7.921214 | TGTTGGCATGTTTCTATTTAAACGAAA | 59.079 | 29.630 | 9.31 | 9.31 | 41.33 | 3.46 |
3930 | 4006 | 1.533625 | ATTGGTCCGTGGTCATGTTG | 58.466 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
3931 | 4007 | 2.355716 | CCTATTGGTCCGTGGTCATGTT | 60.356 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
3936 | 4012 | 1.153229 | GCCCTATTGGTCCGTGGTC | 60.153 | 63.158 | 0.00 | 0.00 | 36.04 | 4.02 |
3938 | 4014 | 1.451387 | GTGCCCTATTGGTCCGTGG | 60.451 | 63.158 | 0.00 | 0.00 | 36.04 | 4.94 |
3939 | 4015 | 1.451387 | GGTGCCCTATTGGTCCGTG | 60.451 | 63.158 | 0.00 | 0.00 | 36.04 | 4.94 |
3940 | 4016 | 1.615424 | AGGTGCCCTATTGGTCCGT | 60.615 | 57.895 | 0.00 | 0.00 | 36.05 | 4.69 |
3941 | 4017 | 1.146263 | GAGGTGCCCTATTGGTCCG | 59.854 | 63.158 | 0.00 | 0.00 | 36.05 | 4.79 |
3942 | 4018 | 0.470341 | GAGAGGTGCCCTATTGGTCC | 59.530 | 60.000 | 0.00 | 0.00 | 31.76 | 4.46 |
3943 | 4019 | 0.470341 | GGAGAGGTGCCCTATTGGTC | 59.530 | 60.000 | 0.00 | 0.00 | 31.76 | 4.02 |
3944 | 4020 | 0.044855 | AGGAGAGGTGCCCTATTGGT | 59.955 | 55.000 | 0.00 | 0.00 | 31.76 | 3.67 |
3945 | 4021 | 1.216990 | AAGGAGAGGTGCCCTATTGG | 58.783 | 55.000 | 0.00 | 0.00 | 31.76 | 3.16 |
3946 | 4022 | 3.282885 | GAAAAGGAGAGGTGCCCTATTG | 58.717 | 50.000 | 0.00 | 0.00 | 31.76 | 1.90 |
3948 | 4024 | 2.562296 | TGAAAAGGAGAGGTGCCCTAT | 58.438 | 47.619 | 0.00 | 0.00 | 31.76 | 2.57 |
3949 | 4025 | 2.038863 | TGAAAAGGAGAGGTGCCCTA | 57.961 | 50.000 | 0.00 | 0.00 | 31.76 | 3.53 |
3950 | 4026 | 1.005215 | CATGAAAAGGAGAGGTGCCCT | 59.995 | 52.381 | 0.00 | 0.00 | 36.03 | 5.19 |
3951 | 4027 | 1.467920 | CATGAAAAGGAGAGGTGCCC | 58.532 | 55.000 | 0.00 | 0.00 | 0.00 | 5.36 |
3952 | 4028 | 0.813821 | GCATGAAAAGGAGAGGTGCC | 59.186 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
3953 | 4029 | 0.813821 | GGCATGAAAAGGAGAGGTGC | 59.186 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
3954 | 4030 | 1.467920 | GGGCATGAAAAGGAGAGGTG | 58.532 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
3956 | 4032 | 1.379642 | GCGGGCATGAAAAGGAGAGG | 61.380 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
3957 | 4033 | 0.677731 | TGCGGGCATGAAAAGGAGAG | 60.678 | 55.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3958 | 4034 | 0.251121 | TTGCGGGCATGAAAAGGAGA | 60.251 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
3959 | 4035 | 0.171903 | CTTGCGGGCATGAAAAGGAG | 59.828 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
3961 | 4037 | 1.446618 | GCTTGCGGGCATGAAAAGG | 60.447 | 57.895 | 10.35 | 0.00 | 0.00 | 3.11 |
3964 | 4040 | 1.603171 | TGAGCTTGCGGGCATGAAA | 60.603 | 52.632 | 10.35 | 0.00 | 34.17 | 2.69 |
3965 | 4041 | 2.033911 | TGAGCTTGCGGGCATGAA | 59.966 | 55.556 | 10.35 | 0.00 | 34.17 | 2.57 |
3966 | 4042 | 2.747460 | GTGAGCTTGCGGGCATGA | 60.747 | 61.111 | 10.35 | 0.00 | 34.17 | 3.07 |
3970 | 4046 | 2.970974 | GACTTGTGAGCTTGCGGGC | 61.971 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
3971 | 4047 | 2.328099 | GGACTTGTGAGCTTGCGGG | 61.328 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
3972 | 4048 | 2.328099 | GGGACTTGTGAGCTTGCGG | 61.328 | 63.158 | 0.00 | 0.00 | 0.00 | 5.69 |
3973 | 4049 | 1.302033 | AGGGACTTGTGAGCTTGCG | 60.302 | 57.895 | 0.00 | 0.00 | 27.25 | 4.85 |
3974 | 4050 | 1.239968 | CCAGGGACTTGTGAGCTTGC | 61.240 | 60.000 | 0.00 | 0.00 | 34.60 | 4.01 |
3975 | 4051 | 0.397941 | TCCAGGGACTTGTGAGCTTG | 59.602 | 55.000 | 0.00 | 0.00 | 34.60 | 4.01 |
3978 | 4054 | 1.609072 | GTTTTCCAGGGACTTGTGAGC | 59.391 | 52.381 | 0.00 | 0.00 | 34.60 | 4.26 |
3979 | 4055 | 2.618709 | GTGTTTTCCAGGGACTTGTGAG | 59.381 | 50.000 | 0.00 | 0.00 | 34.60 | 3.51 |
3980 | 4056 | 2.241176 | AGTGTTTTCCAGGGACTTGTGA | 59.759 | 45.455 | 0.00 | 0.00 | 34.60 | 3.58 |
3981 | 4057 | 2.618709 | GAGTGTTTTCCAGGGACTTGTG | 59.381 | 50.000 | 0.00 | 0.00 | 34.60 | 3.33 |
3983 | 4059 | 1.873591 | CGAGTGTTTTCCAGGGACTTG | 59.126 | 52.381 | 0.00 | 0.00 | 34.60 | 3.16 |
3987 | 4063 | 0.034896 | GAGCGAGTGTTTTCCAGGGA | 59.965 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
3988 | 4064 | 1.291877 | CGAGCGAGTGTTTTCCAGGG | 61.292 | 60.000 | 0.00 | 0.00 | 0.00 | 4.45 |
3989 | 4065 | 0.600255 | ACGAGCGAGTGTTTTCCAGG | 60.600 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
3990 | 4066 | 1.192534 | GAACGAGCGAGTGTTTTCCAG | 59.807 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
3991 | 4067 | 1.214367 | GAACGAGCGAGTGTTTTCCA | 58.786 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
3992 | 4068 | 1.214367 | TGAACGAGCGAGTGTTTTCC | 58.786 | 50.000 | 0.00 | 0.00 | 0.00 | 3.13 |
3997 | 4073 | 0.667487 | CCACATGAACGAGCGAGTGT | 60.667 | 55.000 | 0.00 | 0.00 | 0.00 | 3.55 |
3998 | 4074 | 0.667487 | ACCACATGAACGAGCGAGTG | 60.667 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4000 | 4076 | 0.439985 | CAACCACATGAACGAGCGAG | 59.560 | 55.000 | 0.00 | 0.00 | 0.00 | 5.03 |
4001 | 4077 | 0.249699 | ACAACCACATGAACGAGCGA | 60.250 | 50.000 | 0.00 | 0.00 | 0.00 | 4.93 |
4002 | 4078 | 0.586319 | AACAACCACATGAACGAGCG | 59.414 | 50.000 | 0.00 | 0.00 | 0.00 | 5.03 |
4003 | 4079 | 2.774439 | AAACAACCACATGAACGAGC | 57.226 | 45.000 | 0.00 | 0.00 | 0.00 | 5.03 |
4026 | 4141 | 4.580868 | TGTACATTAGGAAATGGCGAACA | 58.419 | 39.130 | 0.00 | 0.00 | 45.72 | 3.18 |
4050 | 4165 | 8.918961 | TTTCTTAATGAGCGTTCTTTCAAAAA | 57.081 | 26.923 | 3.67 | 1.90 | 0.00 | 1.94 |
4051 | 4166 | 8.402472 | TCTTTCTTAATGAGCGTTCTTTCAAAA | 58.598 | 29.630 | 3.67 | 3.83 | 0.00 | 2.44 |
4055 | 4874 | 6.369065 | TCCTCTTTCTTAATGAGCGTTCTTTC | 59.631 | 38.462 | 3.67 | 0.00 | 32.85 | 2.62 |
4063 | 4882 | 4.163268 | ACTCCCTCCTCTTTCTTAATGAGC | 59.837 | 45.833 | 0.00 | 0.00 | 32.85 | 4.26 |
4227 | 5048 | 9.553418 | CGAATTTGTGAACTTTTTCCAAAATTT | 57.447 | 25.926 | 0.00 | 0.00 | 36.65 | 1.82 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.