Multiple sequence alignment - TraesCS3D01G080200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G080200 chr3D 100.000 3364 0 0 1 3364 39996472 39999835 0.000000e+00 6213
1 TraesCS3D01G080200 chr7D 95.789 2707 66 6 480 3158 518926803 518924117 0.000000e+00 4324
2 TraesCS3D01G080200 chr7D 96.074 2547 72 11 481 3009 8843670 8841134 0.000000e+00 4124
3 TraesCS3D01G080200 chr7D 96.995 2396 49 4 479 2859 118350382 118347995 0.000000e+00 4004
4 TraesCS3D01G080200 chr7D 97.659 2179 37 3 481 2659 503740569 503742733 0.000000e+00 3729
5 TraesCS3D01G080200 chr7D 97.136 2165 39 4 510 2659 169456185 169454029 0.000000e+00 3633
6 TraesCS3D01G080200 chr7D 96.787 747 24 0 2618 3364 518924557 518923811 0.000000e+00 1247
7 TraesCS3D01G080200 chr7D 97.320 597 16 0 2768 3364 8841525 8840929 0.000000e+00 1014
8 TraesCS3D01G080200 chr7D 95.941 542 22 0 2618 3159 518924607 518924066 0.000000e+00 880
9 TraesCS3D01G080200 chr1D 96.742 2486 49 8 478 2947 205097712 205095243 0.000000e+00 4113
10 TraesCS3D01G080200 chr1D 96.774 2294 50 5 481 2759 65881653 65883937 0.000000e+00 3805
11 TraesCS3D01G080200 chr1D 97.652 511 11 1 2854 3364 205094975 205094466 0.000000e+00 876
12 TraesCS3D01G080200 chr1D 98.851 348 3 1 3017 3364 65883796 65884142 1.330000e-173 619
13 TraesCS3D01G080200 chr4D 96.818 2294 48 4 481 2759 434151069 434153352 0.000000e+00 3808
14 TraesCS3D01G080200 chr4D 96.203 2344 46 9 481 2807 425953609 425951292 0.000000e+00 3795
15 TraesCS3D01G080200 chr4D 97.312 2195 42 5 481 2659 3623718 3621525 0.000000e+00 3711
16 TraesCS3D01G080200 chr4D 99.424 347 2 0 3018 3364 434153211 434153557 6.130000e-177 630
17 TraesCS3D01G080200 chr4D 98.157 217 4 0 3118 3334 3621566 3621350 2.450000e-101 379
18 TraesCS3D01G080200 chr2B 91.903 2544 95 38 481 2959 39376823 39379320 0.000000e+00 3454
19 TraesCS3D01G080200 chr5D 90.240 707 58 11 2659 3364 482378452 482377756 0.000000e+00 913
20 TraesCS3D01G080200 chrUn 87.814 796 59 23 2574 3364 29274788 29274026 0.000000e+00 898
21 TraesCS3D01G080200 chr6B 95.520 558 19 4 2807 3364 99067846 99067295 0.000000e+00 887
22 TraesCS3D01G080200 chr3A 87.143 210 12 5 143 340 51466994 51467200 1.210000e-54 224


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G080200 chr3D 39996472 39999835 3363 False 6213.000000 6213 100.000000 1 3364 1 chr3D.!!$F1 3363
1 TraesCS3D01G080200 chr7D 118347995 118350382 2387 True 4004.000000 4004 96.995000 479 2859 1 chr7D.!!$R1 2380
2 TraesCS3D01G080200 chr7D 503740569 503742733 2164 False 3729.000000 3729 97.659000 481 2659 1 chr7D.!!$F1 2178
3 TraesCS3D01G080200 chr7D 169454029 169456185 2156 True 3633.000000 3633 97.136000 510 2659 1 chr7D.!!$R2 2149
4 TraesCS3D01G080200 chr7D 8840929 8843670 2741 True 2569.000000 4124 96.697000 481 3364 2 chr7D.!!$R3 2883
5 TraesCS3D01G080200 chr7D 518923811 518926803 2992 True 2150.333333 4324 96.172333 480 3364 3 chr7D.!!$R4 2884
6 TraesCS3D01G080200 chr1D 205094466 205097712 3246 True 2494.500000 4113 97.197000 478 3364 2 chr1D.!!$R1 2886
7 TraesCS3D01G080200 chr1D 65881653 65884142 2489 False 2212.000000 3805 97.812500 481 3364 2 chr1D.!!$F1 2883
8 TraesCS3D01G080200 chr4D 425951292 425953609 2317 True 3795.000000 3795 96.203000 481 2807 1 chr4D.!!$R1 2326
9 TraesCS3D01G080200 chr4D 434151069 434153557 2488 False 2219.000000 3808 98.121000 481 3364 2 chr4D.!!$F1 2883
10 TraesCS3D01G080200 chr4D 3621350 3623718 2368 True 2045.000000 3711 97.734500 481 3334 2 chr4D.!!$R2 2853
11 TraesCS3D01G080200 chr2B 39376823 39379320 2497 False 3454.000000 3454 91.903000 481 2959 1 chr2B.!!$F1 2478
12 TraesCS3D01G080200 chr5D 482377756 482378452 696 True 913.000000 913 90.240000 2659 3364 1 chr5D.!!$R1 705
13 TraesCS3D01G080200 chrUn 29274026 29274788 762 True 898.000000 898 87.814000 2574 3364 1 chrUn.!!$R1 790
14 TraesCS3D01G080200 chr6B 99067295 99067846 551 True 887.000000 887 95.520000 2807 3364 1 chr6B.!!$R1 557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
208 209 0.032267 GCTCTACGGACAGGGTATGC 59.968 60.0 0.0 0.0 0.0 3.14 F
473 474 0.035343 TCGTCCTCATCGTCTCCTGT 60.035 55.0 0.0 0.0 0.0 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2056 2164 1.623811 GGGTTAGCTTCTCCACAGACA 59.376 52.381 0.0 0.0 0.00 3.41 R
2492 2602 9.684448 CATACTGGAGTACAACATAGTTCATAG 57.316 37.037 0.0 0.0 32.72 2.23 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 8.817677 ATATTATCGTATAGACAACGTAAGCG 57.182 34.615 0.00 0.00 41.08 4.68
39 40 4.801147 ATCGTATAGACAACGTAAGCGA 57.199 40.909 0.00 0.00 41.08 4.93
40 41 3.928211 TCGTATAGACAACGTAAGCGAC 58.072 45.455 0.00 0.00 41.08 5.19
41 42 3.031812 CGTATAGACAACGTAAGCGACC 58.968 50.000 0.00 0.00 45.62 4.79
42 43 2.573941 ATAGACAACGTAAGCGACCC 57.426 50.000 0.00 0.00 45.62 4.46
43 44 1.246649 TAGACAACGTAAGCGACCCA 58.753 50.000 0.00 0.00 45.62 4.51
44 45 0.390124 AGACAACGTAAGCGACCCAA 59.610 50.000 0.00 0.00 45.62 4.12
45 46 1.001633 AGACAACGTAAGCGACCCAAT 59.998 47.619 0.00 0.00 45.62 3.16
46 47 2.231964 AGACAACGTAAGCGACCCAATA 59.768 45.455 0.00 0.00 45.62 1.90
47 48 2.995258 GACAACGTAAGCGACCCAATAA 59.005 45.455 0.00 0.00 45.62 1.40
48 49 2.997986 ACAACGTAAGCGACCCAATAAG 59.002 45.455 0.00 0.00 45.62 1.73
49 50 2.997986 CAACGTAAGCGACCCAATAAGT 59.002 45.455 0.00 0.00 45.62 2.24
50 51 3.323751 ACGTAAGCGACCCAATAAGTT 57.676 42.857 0.00 0.00 45.62 2.66
51 52 3.667360 ACGTAAGCGACCCAATAAGTTT 58.333 40.909 0.00 0.00 45.62 2.66
52 53 3.434299 ACGTAAGCGACCCAATAAGTTTG 59.566 43.478 0.00 0.00 45.62 2.93
53 54 3.680937 CGTAAGCGACCCAATAAGTTTGA 59.319 43.478 0.00 0.00 41.33 2.69
54 55 4.435121 CGTAAGCGACCCAATAAGTTTGAC 60.435 45.833 0.00 0.00 41.33 3.18
55 56 3.418684 AGCGACCCAATAAGTTTGACT 57.581 42.857 0.00 0.00 0.00 3.41
56 57 3.751518 AGCGACCCAATAAGTTTGACTT 58.248 40.909 0.00 0.00 41.97 3.01
57 58 4.901868 AGCGACCCAATAAGTTTGACTTA 58.098 39.130 3.29 3.29 43.95 2.24
58 59 5.310451 AGCGACCCAATAAGTTTGACTTAA 58.690 37.500 4.81 0.00 43.16 1.85
59 60 5.411669 AGCGACCCAATAAGTTTGACTTAAG 59.588 40.000 0.00 0.00 43.16 1.85
60 61 5.410439 GCGACCCAATAAGTTTGACTTAAGA 59.590 40.000 10.09 0.00 43.16 2.10
61 62 6.072893 GCGACCCAATAAGTTTGACTTAAGAA 60.073 38.462 10.09 0.00 43.16 2.52
62 63 7.519002 CGACCCAATAAGTTTGACTTAAGAAG 58.481 38.462 10.09 0.00 43.16 2.85
63 64 7.386848 CGACCCAATAAGTTTGACTTAAGAAGA 59.613 37.037 10.09 0.00 43.16 2.87
64 65 8.990163 ACCCAATAAGTTTGACTTAAGAAGAA 57.010 30.769 10.09 0.00 43.16 2.52
65 66 9.416284 ACCCAATAAGTTTGACTTAAGAAGAAA 57.584 29.630 10.09 2.16 43.16 2.52
92 93 6.694877 AAAAAGACAAAGACCTTCCAGTAC 57.305 37.500 0.00 0.00 0.00 2.73
93 94 4.353383 AAGACAAAGACCTTCCAGTACC 57.647 45.455 0.00 0.00 0.00 3.34
94 95 3.314693 AGACAAAGACCTTCCAGTACCA 58.685 45.455 0.00 0.00 0.00 3.25
95 96 3.910627 AGACAAAGACCTTCCAGTACCAT 59.089 43.478 0.00 0.00 0.00 3.55
96 97 5.091552 AGACAAAGACCTTCCAGTACCATA 58.908 41.667 0.00 0.00 0.00 2.74
97 98 5.726793 AGACAAAGACCTTCCAGTACCATAT 59.273 40.000 0.00 0.00 0.00 1.78
98 99 5.745227 ACAAAGACCTTCCAGTACCATATG 58.255 41.667 0.00 0.00 0.00 1.78
99 100 5.250774 ACAAAGACCTTCCAGTACCATATGT 59.749 40.000 1.24 0.00 0.00 2.29
100 101 6.180472 CAAAGACCTTCCAGTACCATATGTT 58.820 40.000 1.24 0.00 0.00 2.71
101 102 5.615925 AGACCTTCCAGTACCATATGTTC 57.384 43.478 1.24 0.00 0.00 3.18
102 103 4.409247 AGACCTTCCAGTACCATATGTTCC 59.591 45.833 1.24 0.00 0.00 3.62
103 104 4.108570 ACCTTCCAGTACCATATGTTCCA 58.891 43.478 1.24 0.00 0.00 3.53
104 105 4.164221 ACCTTCCAGTACCATATGTTCCAG 59.836 45.833 1.24 0.00 0.00 3.86
105 106 4.164221 CCTTCCAGTACCATATGTTCCAGT 59.836 45.833 1.24 0.00 0.00 4.00
106 107 5.339200 CCTTCCAGTACCATATGTTCCAGTT 60.339 44.000 1.24 0.00 0.00 3.16
107 108 5.097742 TCCAGTACCATATGTTCCAGTTG 57.902 43.478 1.24 0.00 0.00 3.16
108 109 4.080582 TCCAGTACCATATGTTCCAGTTGG 60.081 45.833 1.24 0.00 0.00 3.77
109 110 4.080582 CCAGTACCATATGTTCCAGTTGGA 60.081 45.833 1.24 0.00 43.73 3.53
110 111 4.876107 CAGTACCATATGTTCCAGTTGGAC 59.124 45.833 0.00 0.00 45.39 4.02
111 112 4.783227 AGTACCATATGTTCCAGTTGGACT 59.217 41.667 0.00 0.00 45.39 3.85
112 113 4.657814 ACCATATGTTCCAGTTGGACTT 57.342 40.909 0.00 0.00 45.39 3.01
113 114 4.335416 ACCATATGTTCCAGTTGGACTTG 58.665 43.478 0.00 0.00 45.39 3.16
114 115 3.129287 CCATATGTTCCAGTTGGACTTGC 59.871 47.826 0.00 0.00 45.39 4.01
115 116 2.363306 ATGTTCCAGTTGGACTTGCA 57.637 45.000 0.00 0.00 45.39 4.08
116 117 2.136298 TGTTCCAGTTGGACTTGCAA 57.864 45.000 0.00 0.00 45.39 4.08
117 118 2.665165 TGTTCCAGTTGGACTTGCAAT 58.335 42.857 0.00 0.00 45.39 3.56
118 119 3.826524 TGTTCCAGTTGGACTTGCAATA 58.173 40.909 0.00 0.00 45.39 1.90
119 120 4.211125 TGTTCCAGTTGGACTTGCAATAA 58.789 39.130 0.00 0.00 45.39 1.40
120 121 4.278170 TGTTCCAGTTGGACTTGCAATAAG 59.722 41.667 0.00 0.00 45.39 1.73
121 122 4.365514 TCCAGTTGGACTTGCAATAAGA 57.634 40.909 0.00 0.00 39.78 2.10
122 123 4.072131 TCCAGTTGGACTTGCAATAAGAC 58.928 43.478 0.00 0.00 39.78 3.01
123 124 3.820467 CCAGTTGGACTTGCAATAAGACA 59.180 43.478 0.00 0.00 37.39 3.41
124 125 4.460382 CCAGTTGGACTTGCAATAAGACAT 59.540 41.667 0.00 0.00 37.39 3.06
125 126 5.392380 CCAGTTGGACTTGCAATAAGACATC 60.392 44.000 0.00 0.00 37.39 3.06
126 127 4.702131 AGTTGGACTTGCAATAAGACATCC 59.298 41.667 0.00 0.00 0.00 3.51
127 128 3.270027 TGGACTTGCAATAAGACATCCG 58.730 45.455 0.00 0.00 0.00 4.18
128 129 3.055458 TGGACTTGCAATAAGACATCCGA 60.055 43.478 0.00 0.00 0.00 4.55
129 130 3.938963 GGACTTGCAATAAGACATCCGAA 59.061 43.478 0.00 0.00 0.00 4.30
130 131 4.034510 GGACTTGCAATAAGACATCCGAAG 59.965 45.833 0.00 0.00 0.00 3.79
131 132 3.375299 ACTTGCAATAAGACATCCGAAGC 59.625 43.478 0.00 0.00 0.00 3.86
132 133 3.266510 TGCAATAAGACATCCGAAGCT 57.733 42.857 0.00 0.00 0.00 3.74
133 134 3.609853 TGCAATAAGACATCCGAAGCTT 58.390 40.909 0.00 0.00 0.00 3.74
134 135 3.623060 TGCAATAAGACATCCGAAGCTTC 59.377 43.478 16.84 16.84 0.00 3.86
135 136 3.623060 GCAATAAGACATCCGAAGCTTCA 59.377 43.478 25.47 8.12 0.00 3.02
136 137 4.274459 GCAATAAGACATCCGAAGCTTCAT 59.726 41.667 25.47 10.19 0.00 2.57
137 138 5.745514 CAATAAGACATCCGAAGCTTCATG 58.254 41.667 25.47 22.34 0.00 3.07
138 139 2.322355 AGACATCCGAAGCTTCATGG 57.678 50.000 25.47 18.82 0.00 3.66
139 140 1.556911 AGACATCCGAAGCTTCATGGT 59.443 47.619 25.47 16.65 0.00 3.55
140 141 2.026822 AGACATCCGAAGCTTCATGGTT 60.027 45.455 25.47 11.87 39.32 3.67
141 142 2.086869 ACATCCGAAGCTTCATGGTTG 58.913 47.619 25.47 22.77 36.40 3.77
142 143 1.098050 ATCCGAAGCTTCATGGTTGC 58.902 50.000 25.47 0.00 36.40 4.17
143 144 0.036732 TCCGAAGCTTCATGGTTGCT 59.963 50.000 25.47 0.00 36.40 3.91
144 145 0.169672 CCGAAGCTTCATGGTTGCTG 59.830 55.000 25.47 6.28 37.11 4.41
145 146 1.159285 CGAAGCTTCATGGTTGCTGA 58.841 50.000 25.47 0.00 37.11 4.26
146 147 1.741706 CGAAGCTTCATGGTTGCTGAT 59.258 47.619 25.47 0.00 37.11 2.90
147 148 2.477357 CGAAGCTTCATGGTTGCTGATG 60.477 50.000 25.47 1.22 37.11 3.07
148 149 1.471119 AGCTTCATGGTTGCTGATGG 58.529 50.000 7.10 0.00 35.54 3.51
149 150 1.180029 GCTTCATGGTTGCTGATGGT 58.820 50.000 0.00 0.00 0.00 3.55
150 151 1.135199 GCTTCATGGTTGCTGATGGTG 60.135 52.381 0.00 0.00 0.00 4.17
151 152 1.475280 CTTCATGGTTGCTGATGGTGG 59.525 52.381 0.00 0.00 0.00 4.61
152 153 0.323633 TCATGGTTGCTGATGGTGGG 60.324 55.000 0.00 0.00 0.00 4.61
153 154 1.683365 ATGGTTGCTGATGGTGGGC 60.683 57.895 0.00 0.00 0.00 5.36
154 155 3.443045 GGTTGCTGATGGTGGGCG 61.443 66.667 0.00 0.00 0.00 6.13
155 156 2.672996 GTTGCTGATGGTGGGCGT 60.673 61.111 0.00 0.00 0.00 5.68
156 157 2.672651 TTGCTGATGGTGGGCGTG 60.673 61.111 0.00 0.00 0.00 5.34
157 158 4.720902 TGCTGATGGTGGGCGTGG 62.721 66.667 0.00 0.00 0.00 4.94
158 159 4.722700 GCTGATGGTGGGCGTGGT 62.723 66.667 0.00 0.00 0.00 4.16
159 160 2.747460 CTGATGGTGGGCGTGGTG 60.747 66.667 0.00 0.00 0.00 4.17
160 161 3.245346 TGATGGTGGGCGTGGTGA 61.245 61.111 0.00 0.00 0.00 4.02
161 162 2.272146 GATGGTGGGCGTGGTGAT 59.728 61.111 0.00 0.00 0.00 3.06
162 163 2.045045 ATGGTGGGCGTGGTGATG 60.045 61.111 0.00 0.00 0.00 3.07
164 165 4.722700 GGTGGGCGTGGTGATGCT 62.723 66.667 0.00 0.00 34.20 3.79
165 166 3.434319 GTGGGCGTGGTGATGCTG 61.434 66.667 0.00 0.00 34.20 4.41
166 167 3.952508 TGGGCGTGGTGATGCTGT 61.953 61.111 0.00 0.00 34.20 4.40
167 168 2.672996 GGGCGTGGTGATGCTGTT 60.673 61.111 0.00 0.00 34.20 3.16
168 169 2.562912 GGCGTGGTGATGCTGTTG 59.437 61.111 0.00 0.00 34.20 3.33
169 170 1.965930 GGCGTGGTGATGCTGTTGA 60.966 57.895 0.00 0.00 34.20 3.18
170 171 1.207593 GCGTGGTGATGCTGTTGAC 59.792 57.895 0.00 0.00 0.00 3.18
171 172 1.506309 GCGTGGTGATGCTGTTGACA 61.506 55.000 0.00 0.00 0.00 3.58
172 173 1.159285 CGTGGTGATGCTGTTGACAT 58.841 50.000 0.00 0.00 0.00 3.06
173 174 1.536766 CGTGGTGATGCTGTTGACATT 59.463 47.619 0.00 0.00 0.00 2.71
174 175 2.030893 CGTGGTGATGCTGTTGACATTT 60.031 45.455 0.00 0.00 0.00 2.32
175 176 3.311106 GTGGTGATGCTGTTGACATTTG 58.689 45.455 0.00 0.00 0.00 2.32
176 177 3.004629 GTGGTGATGCTGTTGACATTTGA 59.995 43.478 0.00 0.00 0.00 2.69
177 178 3.004629 TGGTGATGCTGTTGACATTTGAC 59.995 43.478 0.00 0.00 0.00 3.18
178 179 3.004629 GGTGATGCTGTTGACATTTGACA 59.995 43.478 0.00 0.00 0.00 3.58
179 180 4.224433 GTGATGCTGTTGACATTTGACAG 58.776 43.478 1.34 1.34 42.75 3.51
180 181 4.023792 GTGATGCTGTTGACATTTGACAGA 60.024 41.667 8.82 0.00 42.54 3.41
181 182 4.763279 TGATGCTGTTGACATTTGACAGAT 59.237 37.500 8.82 1.11 42.54 2.90
182 183 5.939296 TGATGCTGTTGACATTTGACAGATA 59.061 36.000 8.82 0.00 42.54 1.98
183 184 5.611796 TGCTGTTGACATTTGACAGATAC 57.388 39.130 8.82 0.00 42.54 2.24
184 185 4.455533 TGCTGTTGACATTTGACAGATACC 59.544 41.667 8.82 0.00 42.54 2.73
185 186 4.455533 GCTGTTGACATTTGACAGATACCA 59.544 41.667 8.82 0.00 42.54 3.25
186 187 5.617751 GCTGTTGACATTTGACAGATACCAC 60.618 44.000 8.82 0.00 42.54 4.16
187 188 4.759693 TGTTGACATTTGACAGATACCACC 59.240 41.667 0.00 0.00 0.00 4.61
188 189 3.595173 TGACATTTGACAGATACCACCG 58.405 45.455 0.00 0.00 0.00 4.94
189 190 2.936498 GACATTTGACAGATACCACCGG 59.064 50.000 0.00 0.00 0.00 5.28
190 191 1.670811 CATTTGACAGATACCACCGGC 59.329 52.381 0.00 0.00 0.00 6.13
191 192 0.981183 TTTGACAGATACCACCGGCT 59.019 50.000 0.00 0.00 0.00 5.52
192 193 0.535335 TTGACAGATACCACCGGCTC 59.465 55.000 0.00 0.00 0.00 4.70
193 194 0.324368 TGACAGATACCACCGGCTCT 60.324 55.000 0.00 0.00 0.00 4.09
194 195 1.064240 TGACAGATACCACCGGCTCTA 60.064 52.381 0.00 0.00 0.00 2.43
195 196 1.337387 GACAGATACCACCGGCTCTAC 59.663 57.143 0.00 0.00 0.00 2.59
196 197 0.311165 CAGATACCACCGGCTCTACG 59.689 60.000 0.00 0.00 0.00 3.51
204 205 2.754658 CGGCTCTACGGACAGGGT 60.755 66.667 0.00 0.00 0.00 4.34
205 206 1.452651 CGGCTCTACGGACAGGGTA 60.453 63.158 0.00 0.00 0.00 3.69
206 207 0.822532 CGGCTCTACGGACAGGGTAT 60.823 60.000 0.00 0.00 0.00 2.73
207 208 0.674534 GGCTCTACGGACAGGGTATG 59.325 60.000 0.00 0.00 0.00 2.39
208 209 0.032267 GCTCTACGGACAGGGTATGC 59.968 60.000 0.00 0.00 0.00 3.14
209 210 0.674534 CTCTACGGACAGGGTATGCC 59.325 60.000 0.00 0.00 0.00 4.40
226 227 4.690719 CCACTGCCGCCCGTGTAA 62.691 66.667 8.53 0.00 0.00 2.41
227 228 2.435938 CACTGCCGCCCGTGTAAT 60.436 61.111 2.61 0.00 0.00 1.89
228 229 2.038269 CACTGCCGCCCGTGTAATT 61.038 57.895 2.61 0.00 0.00 1.40
229 230 1.302993 ACTGCCGCCCGTGTAATTT 60.303 52.632 0.00 0.00 0.00 1.82
230 231 0.891904 ACTGCCGCCCGTGTAATTTT 60.892 50.000 0.00 0.00 0.00 1.82
231 232 0.179174 CTGCCGCCCGTGTAATTTTC 60.179 55.000 0.00 0.00 0.00 2.29
232 233 0.606944 TGCCGCCCGTGTAATTTTCT 60.607 50.000 0.00 0.00 0.00 2.52
233 234 0.524414 GCCGCCCGTGTAATTTTCTT 59.476 50.000 0.00 0.00 0.00 2.52
234 235 1.466866 GCCGCCCGTGTAATTTTCTTC 60.467 52.381 0.00 0.00 0.00 2.87
235 236 2.081462 CCGCCCGTGTAATTTTCTTCT 58.919 47.619 0.00 0.00 0.00 2.85
236 237 2.159572 CCGCCCGTGTAATTTTCTTCTG 60.160 50.000 0.00 0.00 0.00 3.02
237 238 2.482721 CGCCCGTGTAATTTTCTTCTGT 59.517 45.455 0.00 0.00 0.00 3.41
238 239 3.680937 CGCCCGTGTAATTTTCTTCTGTA 59.319 43.478 0.00 0.00 0.00 2.74
239 240 4.201685 CGCCCGTGTAATTTTCTTCTGTAG 60.202 45.833 0.00 0.00 0.00 2.74
240 241 4.933400 GCCCGTGTAATTTTCTTCTGTAGA 59.067 41.667 0.00 0.00 0.00 2.59
241 242 5.410439 GCCCGTGTAATTTTCTTCTGTAGAA 59.590 40.000 0.00 0.00 41.11 2.10
242 243 6.620089 GCCCGTGTAATTTTCTTCTGTAGAAC 60.620 42.308 0.00 0.00 42.50 3.01
243 244 6.425721 CCCGTGTAATTTTCTTCTGTAGAACA 59.574 38.462 0.00 0.00 42.50 3.18
244 245 7.119262 CCCGTGTAATTTTCTTCTGTAGAACAT 59.881 37.037 0.00 0.00 42.50 2.71
245 246 7.957484 CCGTGTAATTTTCTTCTGTAGAACATG 59.043 37.037 0.00 0.00 42.50 3.21
246 247 8.708742 CGTGTAATTTTCTTCTGTAGAACATGA 58.291 33.333 0.00 0.00 42.50 3.07
251 252 9.512588 AATTTTCTTCTGTAGAACATGATGAGT 57.487 29.630 0.00 0.00 42.50 3.41
263 264 8.539770 AGAACATGATGAGTATAATAAAGCGG 57.460 34.615 0.00 0.00 0.00 5.52
264 265 6.727824 ACATGATGAGTATAATAAAGCGGC 57.272 37.500 0.00 0.00 0.00 6.53
265 266 5.643777 ACATGATGAGTATAATAAAGCGGCC 59.356 40.000 0.00 0.00 0.00 6.13
266 267 5.222079 TGATGAGTATAATAAAGCGGCCA 57.778 39.130 2.24 0.00 0.00 5.36
267 268 5.616270 TGATGAGTATAATAAAGCGGCCAA 58.384 37.500 2.24 0.00 0.00 4.52
268 269 6.058833 TGATGAGTATAATAAAGCGGCCAAA 58.941 36.000 2.24 0.00 0.00 3.28
269 270 6.204688 TGATGAGTATAATAAAGCGGCCAAAG 59.795 38.462 2.24 0.00 0.00 2.77
270 271 5.676552 TGAGTATAATAAAGCGGCCAAAGA 58.323 37.500 2.24 0.00 0.00 2.52
271 272 5.758296 TGAGTATAATAAAGCGGCCAAAGAG 59.242 40.000 2.24 0.00 0.00 2.85
272 273 5.925509 AGTATAATAAAGCGGCCAAAGAGA 58.074 37.500 2.24 0.00 0.00 3.10
273 274 6.354130 AGTATAATAAAGCGGCCAAAGAGAA 58.646 36.000 2.24 0.00 0.00 2.87
274 275 3.850122 AATAAAGCGGCCAAAGAGAAC 57.150 42.857 2.24 0.00 0.00 3.01
275 276 1.153353 TAAAGCGGCCAAAGAGAACG 58.847 50.000 2.24 0.00 0.00 3.95
276 277 0.534203 AAAGCGGCCAAAGAGAACGA 60.534 50.000 2.24 0.00 0.00 3.85
277 278 0.534203 AAGCGGCCAAAGAGAACGAA 60.534 50.000 2.24 0.00 0.00 3.85
278 279 1.206831 GCGGCCAAAGAGAACGAAC 59.793 57.895 2.24 0.00 0.00 3.95
279 280 1.228657 GCGGCCAAAGAGAACGAACT 61.229 55.000 2.24 0.00 0.00 3.01
280 281 0.512952 CGGCCAAAGAGAACGAACTG 59.487 55.000 2.24 0.00 0.00 3.16
281 282 1.872237 CGGCCAAAGAGAACGAACTGA 60.872 52.381 2.24 0.00 0.00 3.41
282 283 2.427506 GGCCAAAGAGAACGAACTGAT 58.572 47.619 0.00 0.00 0.00 2.90
283 284 2.814336 GGCCAAAGAGAACGAACTGATT 59.186 45.455 0.00 0.00 0.00 2.57
284 285 4.000988 GGCCAAAGAGAACGAACTGATTA 58.999 43.478 0.00 0.00 0.00 1.75
285 286 4.142881 GGCCAAAGAGAACGAACTGATTAC 60.143 45.833 0.00 0.00 0.00 1.89
286 287 4.691216 GCCAAAGAGAACGAACTGATTACT 59.309 41.667 0.00 0.00 0.00 2.24
287 288 5.389935 GCCAAAGAGAACGAACTGATTACTG 60.390 44.000 0.00 0.00 0.00 2.74
288 289 5.926542 CCAAAGAGAACGAACTGATTACTGA 59.073 40.000 0.00 0.00 0.00 3.41
289 290 6.090088 CCAAAGAGAACGAACTGATTACTGAG 59.910 42.308 0.00 0.00 0.00 3.35
290 291 5.968528 AGAGAACGAACTGATTACTGAGT 57.031 39.130 0.00 0.00 0.00 3.41
291 292 7.450124 AAGAGAACGAACTGATTACTGAGTA 57.550 36.000 0.00 0.00 0.00 2.59
292 293 6.844254 AGAGAACGAACTGATTACTGAGTAC 58.156 40.000 0.00 0.00 0.00 2.73
293 294 6.430308 AGAGAACGAACTGATTACTGAGTACA 59.570 38.462 0.00 0.00 0.00 2.90
295 296 6.430308 AGAACGAACTGATTACTGAGTACAGA 59.570 38.462 14.78 0.00 46.03 3.41
296 297 6.570672 ACGAACTGATTACTGAGTACAGAA 57.429 37.500 14.78 0.00 46.03 3.02
297 298 6.380190 ACGAACTGATTACTGAGTACAGAAC 58.620 40.000 14.78 8.40 46.03 3.01
298 299 6.207025 ACGAACTGATTACTGAGTACAGAACT 59.793 38.462 14.78 2.19 46.03 3.01
299 300 7.389884 ACGAACTGATTACTGAGTACAGAACTA 59.610 37.037 14.78 0.00 46.03 2.24
300 301 8.235226 CGAACTGATTACTGAGTACAGAACTAA 58.765 37.037 14.78 0.00 46.03 2.24
305 306 9.653287 TGATTACTGAGTACAGAACTAATTTGG 57.347 33.333 0.00 0.00 46.03 3.28
306 307 7.900782 TTACTGAGTACAGAACTAATTTGGC 57.099 36.000 0.00 0.00 46.03 4.52
307 308 5.865085 ACTGAGTACAGAACTAATTTGGCA 58.135 37.500 0.00 0.00 46.03 4.92
308 309 6.296026 ACTGAGTACAGAACTAATTTGGCAA 58.704 36.000 0.00 0.00 46.03 4.52
309 310 6.204882 ACTGAGTACAGAACTAATTTGGCAAC 59.795 38.462 0.00 0.00 46.03 4.17
310 311 6.058833 TGAGTACAGAACTAATTTGGCAACA 58.941 36.000 0.00 0.00 42.42 3.33
311 312 6.017440 TGAGTACAGAACTAATTTGGCAACAC 60.017 38.462 0.00 0.00 43.56 3.32
312 313 5.049680 AGTACAGAACTAATTTGGCAACACG 60.050 40.000 0.00 0.00 42.05 4.49
313 314 7.182860 AGTACAGAACTAATTTGGCAACACGA 61.183 38.462 0.00 0.00 42.05 4.35
314 315 8.435624 AGTACAGAACTAATTTGGCAACACGAT 61.436 37.037 0.00 0.00 42.05 3.73
322 323 1.819928 TGGCAACACGATATGCAAGT 58.180 45.000 11.76 0.00 46.17 3.16
323 324 1.468127 TGGCAACACGATATGCAAGTG 59.532 47.619 11.64 11.64 46.17 3.16
324 325 1.538276 GCAACACGATATGCAAGTGC 58.462 50.000 12.71 0.00 42.12 4.40
325 326 1.795162 GCAACACGATATGCAAGTGCC 60.795 52.381 12.71 1.96 42.12 5.01
326 327 1.094785 AACACGATATGCAAGTGCCC 58.905 50.000 12.71 0.00 41.18 5.36
327 328 0.035534 ACACGATATGCAAGTGCCCA 60.036 50.000 12.71 0.00 41.18 5.36
328 329 1.093972 CACGATATGCAAGTGCCCAA 58.906 50.000 0.00 0.00 41.18 4.12
329 330 1.472082 CACGATATGCAAGTGCCCAAA 59.528 47.619 0.00 0.00 41.18 3.28
330 331 2.099592 CACGATATGCAAGTGCCCAAAT 59.900 45.455 0.00 0.00 41.18 2.32
331 332 3.314913 CACGATATGCAAGTGCCCAAATA 59.685 43.478 0.00 0.00 41.18 1.40
332 333 4.022935 CACGATATGCAAGTGCCCAAATAT 60.023 41.667 0.00 0.00 41.18 1.28
333 334 4.584325 ACGATATGCAAGTGCCCAAATATT 59.416 37.500 0.00 0.00 41.18 1.28
334 335 4.919168 CGATATGCAAGTGCCCAAATATTG 59.081 41.667 0.00 0.00 41.18 1.90
335 336 5.278414 CGATATGCAAGTGCCCAAATATTGA 60.278 40.000 0.00 0.00 41.18 2.57
336 337 4.822685 ATGCAAGTGCCCAAATATTGAA 57.177 36.364 0.00 0.00 41.18 2.69
337 338 4.613925 TGCAAGTGCCCAAATATTGAAA 57.386 36.364 0.00 0.00 41.18 2.69
338 339 5.163281 TGCAAGTGCCCAAATATTGAAAT 57.837 34.783 0.00 0.00 41.18 2.17
339 340 6.291648 TGCAAGTGCCCAAATATTGAAATA 57.708 33.333 0.00 0.00 41.18 1.40
340 341 6.339730 TGCAAGTGCCCAAATATTGAAATAG 58.660 36.000 0.00 0.00 41.18 1.73
341 342 6.154192 TGCAAGTGCCCAAATATTGAAATAGA 59.846 34.615 0.00 0.00 41.18 1.98
342 343 7.147689 TGCAAGTGCCCAAATATTGAAATAGAT 60.148 33.333 0.00 0.00 41.18 1.98
343 344 8.359642 GCAAGTGCCCAAATATTGAAATAGATA 58.640 33.333 0.00 0.00 34.31 1.98
344 345 9.903682 CAAGTGCCCAAATATTGAAATAGATAG 57.096 33.333 0.00 0.00 0.00 2.08
345 346 9.646522 AAGTGCCCAAATATTGAAATAGATAGT 57.353 29.630 0.00 0.00 0.00 2.12
348 349 9.739276 TGCCCAAATATTGAAATAGATAGTAGG 57.261 33.333 0.00 0.00 0.00 3.18
349 350 9.740710 GCCCAAATATTGAAATAGATAGTAGGT 57.259 33.333 0.00 0.00 0.00 3.08
359 360 9.836864 TGAAATAGATAGTAGGTACGTAGTTGA 57.163 33.333 8.15 0.00 37.78 3.18
362 363 6.557291 AGATAGTAGGTACGTAGTTGATGC 57.443 41.667 8.15 0.00 37.78 3.91
363 364 5.472820 AGATAGTAGGTACGTAGTTGATGCC 59.527 44.000 8.15 0.00 37.78 4.40
364 365 2.357009 AGTAGGTACGTAGTTGATGCCG 59.643 50.000 0.00 0.00 37.78 5.69
365 366 0.458669 AGGTACGTAGTTGATGCCGG 59.541 55.000 0.00 0.00 37.78 6.13
366 367 1.149964 GGTACGTAGTTGATGCCGGC 61.150 60.000 22.73 22.73 37.78 6.13
367 368 1.226745 TACGTAGTTGATGCCGGCG 60.227 57.895 23.90 6.26 37.78 6.46
368 369 3.925238 CGTAGTTGATGCCGGCGC 61.925 66.667 23.90 17.28 0.00 6.53
369 370 2.511600 GTAGTTGATGCCGGCGCT 60.512 61.111 23.90 12.17 35.36 5.92
370 371 2.106683 GTAGTTGATGCCGGCGCTT 61.107 57.895 23.90 9.31 35.36 4.68
371 372 1.376683 TAGTTGATGCCGGCGCTTT 60.377 52.632 23.90 6.30 35.36 3.51
372 373 1.643868 TAGTTGATGCCGGCGCTTTG 61.644 55.000 23.90 0.00 35.36 2.77
373 374 2.983030 TTGATGCCGGCGCTTTGT 60.983 55.556 23.90 2.67 35.36 2.83
374 375 2.560119 TTGATGCCGGCGCTTTGTT 61.560 52.632 23.90 0.00 35.36 2.83
375 376 2.202479 GATGCCGGCGCTTTGTTC 60.202 61.111 23.90 5.88 35.36 3.18
376 377 3.683587 GATGCCGGCGCTTTGTTCC 62.684 63.158 23.90 0.00 35.36 3.62
379 380 3.431725 CCGGCGCTTTGTTCCCTC 61.432 66.667 7.64 0.00 0.00 4.30
380 381 3.788766 CGGCGCTTTGTTCCCTCG 61.789 66.667 7.64 0.00 0.00 4.63
381 382 4.103103 GGCGCTTTGTTCCCTCGC 62.103 66.667 7.64 0.00 44.39 5.03
382 383 3.050275 GCGCTTTGTTCCCTCGCT 61.050 61.111 0.00 0.00 42.19 4.93
383 384 1.740296 GCGCTTTGTTCCCTCGCTA 60.740 57.895 0.00 0.00 42.19 4.26
384 385 1.296056 GCGCTTTGTTCCCTCGCTAA 61.296 55.000 0.00 0.00 42.19 3.09
385 386 0.721718 CGCTTTGTTCCCTCGCTAAG 59.278 55.000 0.00 0.00 0.00 2.18
386 387 0.448197 GCTTTGTTCCCTCGCTAAGC 59.552 55.000 0.00 0.00 36.63 3.09
387 388 1.808411 CTTTGTTCCCTCGCTAAGCA 58.192 50.000 0.00 0.00 0.00 3.91
388 389 2.151202 CTTTGTTCCCTCGCTAAGCAA 58.849 47.619 0.00 0.00 0.00 3.91
389 390 1.519408 TTGTTCCCTCGCTAAGCAAC 58.481 50.000 0.00 0.00 0.00 4.17
390 391 0.394938 TGTTCCCTCGCTAAGCAACA 59.605 50.000 0.00 0.00 0.00 3.33
391 392 0.796927 GTTCCCTCGCTAAGCAACAC 59.203 55.000 0.00 0.00 0.00 3.32
392 393 0.669318 TTCCCTCGCTAAGCAACACG 60.669 55.000 0.00 0.00 0.00 4.49
393 394 1.080093 CCCTCGCTAAGCAACACGA 60.080 57.895 0.00 0.00 0.00 4.35
394 395 0.460284 CCCTCGCTAAGCAACACGAT 60.460 55.000 0.00 0.00 33.53 3.73
395 396 1.202371 CCCTCGCTAAGCAACACGATA 60.202 52.381 0.00 0.00 33.53 2.92
396 397 2.545952 CCCTCGCTAAGCAACACGATAT 60.546 50.000 0.00 0.00 33.53 1.63
397 398 2.472861 CCTCGCTAAGCAACACGATATG 59.527 50.000 0.00 0.00 33.53 1.78
398 399 1.858458 TCGCTAAGCAACACGATATGC 59.142 47.619 0.00 0.00 42.87 3.14
407 408 5.907197 GCAACACGATATGCTAATACAGT 57.093 39.130 0.00 0.00 39.46 3.55
408 409 6.287107 GCAACACGATATGCTAATACAGTT 57.713 37.500 0.00 0.00 39.46 3.16
409 410 6.129393 GCAACACGATATGCTAATACAGTTG 58.871 40.000 0.00 0.00 39.46 3.16
410 411 6.238103 GCAACACGATATGCTAATACAGTTGT 60.238 38.462 0.00 0.00 39.46 3.32
411 412 7.337718 CAACACGATATGCTAATACAGTTGTC 58.662 38.462 0.00 0.00 0.00 3.18
412 413 5.983720 ACACGATATGCTAATACAGTTGTCC 59.016 40.000 0.00 0.00 0.00 4.02
413 414 6.183360 ACACGATATGCTAATACAGTTGTCCT 60.183 38.462 0.00 0.00 0.00 3.85
414 415 6.701841 CACGATATGCTAATACAGTTGTCCTT 59.298 38.462 0.00 0.00 0.00 3.36
415 416 7.865889 CACGATATGCTAATACAGTTGTCCTTA 59.134 37.037 0.00 0.00 0.00 2.69
416 417 7.866393 ACGATATGCTAATACAGTTGTCCTTAC 59.134 37.037 0.00 0.00 0.00 2.34
417 418 7.328737 CGATATGCTAATACAGTTGTCCTTACC 59.671 40.741 0.00 0.00 0.00 2.85
418 419 4.751060 TGCTAATACAGTTGTCCTTACCG 58.249 43.478 0.00 0.00 0.00 4.02
419 420 4.117685 GCTAATACAGTTGTCCTTACCGG 58.882 47.826 0.00 0.00 0.00 5.28
420 421 4.142093 GCTAATACAGTTGTCCTTACCGGA 60.142 45.833 9.46 0.00 40.30 5.14
421 422 4.467198 AATACAGTTGTCCTTACCGGAG 57.533 45.455 9.46 0.00 44.20 4.63
422 423 1.713297 ACAGTTGTCCTTACCGGAGT 58.287 50.000 9.46 0.00 44.20 3.85
423 424 2.880443 ACAGTTGTCCTTACCGGAGTA 58.120 47.619 9.46 0.00 44.20 2.59
424 425 3.233507 ACAGTTGTCCTTACCGGAGTAA 58.766 45.455 9.46 0.00 44.20 2.24
433 434 3.737559 TTACCGGAGTAAGGTAGTGGA 57.262 47.619 9.46 0.00 44.16 4.02
434 435 2.842645 ACCGGAGTAAGGTAGTGGAT 57.157 50.000 9.46 0.00 40.80 3.41
435 436 2.385803 ACCGGAGTAAGGTAGTGGATG 58.614 52.381 9.46 0.00 40.80 3.51
436 437 2.292061 ACCGGAGTAAGGTAGTGGATGT 60.292 50.000 9.46 0.00 40.80 3.06
437 438 2.361438 CCGGAGTAAGGTAGTGGATGTC 59.639 54.545 0.00 0.00 0.00 3.06
438 439 2.033049 CGGAGTAAGGTAGTGGATGTCG 59.967 54.545 0.00 0.00 0.00 4.35
439 440 2.361438 GGAGTAAGGTAGTGGATGTCGG 59.639 54.545 0.00 0.00 0.00 4.79
440 441 1.755380 AGTAAGGTAGTGGATGTCGGC 59.245 52.381 0.00 0.00 0.00 5.54
441 442 0.742505 TAAGGTAGTGGATGTCGGCG 59.257 55.000 0.00 0.00 0.00 6.46
442 443 2.573609 AAGGTAGTGGATGTCGGCGC 62.574 60.000 0.00 0.00 0.00 6.53
443 444 2.585247 GTAGTGGATGTCGGCGCC 60.585 66.667 19.07 19.07 0.00 6.53
444 445 2.758327 TAGTGGATGTCGGCGCCT 60.758 61.111 26.68 4.89 0.00 5.52
445 446 2.782222 TAGTGGATGTCGGCGCCTC 61.782 63.158 26.68 15.25 0.00 4.70
463 464 3.518998 CCGCCGTCTCGTCCTCAT 61.519 66.667 0.00 0.00 0.00 2.90
464 465 2.024871 CGCCGTCTCGTCCTCATC 59.975 66.667 0.00 0.00 0.00 2.92
465 466 2.024871 GCCGTCTCGTCCTCATCG 59.975 66.667 0.00 0.00 0.00 3.84
466 467 2.762234 GCCGTCTCGTCCTCATCGT 61.762 63.158 0.00 0.00 0.00 3.73
467 468 1.352404 CCGTCTCGTCCTCATCGTC 59.648 63.158 0.00 0.00 0.00 4.20
468 469 1.090625 CCGTCTCGTCCTCATCGTCT 61.091 60.000 0.00 0.00 0.00 4.18
469 470 0.302288 CGTCTCGTCCTCATCGTCTC 59.698 60.000 0.00 0.00 0.00 3.36
470 471 0.658897 GTCTCGTCCTCATCGTCTCC 59.341 60.000 0.00 0.00 0.00 3.71
471 472 0.542333 TCTCGTCCTCATCGTCTCCT 59.458 55.000 0.00 0.00 0.00 3.69
472 473 0.660488 CTCGTCCTCATCGTCTCCTG 59.340 60.000 0.00 0.00 0.00 3.86
473 474 0.035343 TCGTCCTCATCGTCTCCTGT 60.035 55.000 0.00 0.00 0.00 4.00
474 475 0.378962 CGTCCTCATCGTCTCCTGTC 59.621 60.000 0.00 0.00 0.00 3.51
475 476 0.741915 GTCCTCATCGTCTCCTGTCC 59.258 60.000 0.00 0.00 0.00 4.02
476 477 0.395862 TCCTCATCGTCTCCTGTCCC 60.396 60.000 0.00 0.00 0.00 4.46
494 495 0.254747 CCCGGGAGTTAATTGCAGGA 59.745 55.000 18.48 0.00 0.00 3.86
610 611 4.261322 CGGGCTAAACTGCGTATAACTCTA 60.261 45.833 0.00 0.00 0.00 2.43
634 635 1.616374 TGACGCTGTATCTGACAACCA 59.384 47.619 0.00 0.00 37.70 3.67
841 877 1.153469 GACTACTCCAGCCTGCAGC 60.153 63.158 8.66 3.91 44.25 5.25
1491 1592 8.371770 AGCTCTGTTGTTCTTTAGTTCTTTAG 57.628 34.615 0.00 0.00 0.00 1.85
1492 1593 7.988028 AGCTCTGTTGTTCTTTAGTTCTTTAGT 59.012 33.333 0.00 0.00 0.00 2.24
1493 1594 8.613482 GCTCTGTTGTTCTTTAGTTCTTTAGTT 58.387 33.333 0.00 0.00 0.00 2.24
1495 1596 9.886132 TCTGTTGTTCTTTAGTTCTTTAGTTCT 57.114 29.630 0.00 0.00 0.00 3.01
1635 1738 2.857186 TGCACTGTTGAAGCTATGGA 57.143 45.000 0.00 0.00 0.00 3.41
1791 1895 2.775418 TGAATGCCCAAGAGGATAGGA 58.225 47.619 0.00 0.00 38.24 2.94
2044 2152 2.024414 GAACTTGCAGTTCCAGGTTGT 58.976 47.619 14.47 0.00 46.68 3.32
2055 2163 4.881850 AGTTCCAGGTTGTTGAACTAACTG 59.118 41.667 16.15 16.15 45.02 3.16
2056 2164 4.497291 TCCAGGTTGTTGAACTAACTGT 57.503 40.909 20.16 3.36 37.03 3.55
2522 2632 7.241042 ACTATGTTGTACTCCAGTATGTTGT 57.759 36.000 0.00 0.00 32.54 3.32
2532 2642 7.672983 ACTCCAGTATGTTGTTGTAAGAATG 57.327 36.000 0.00 0.00 0.00 2.67
2708 3111 5.299949 GTCGACAACCCCTAAAGACTAAAA 58.700 41.667 11.55 0.00 0.00 1.52
2717 3120 6.183361 ACCCCTAAAGACTAAAACTTTGGCTA 60.183 38.462 0.00 0.00 37.96 3.93
2718 3121 6.890268 CCCCTAAAGACTAAAACTTTGGCTAT 59.110 38.462 0.00 0.00 37.96 2.97
2719 3122 7.148069 CCCCTAAAGACTAAAACTTTGGCTATG 60.148 40.741 0.00 0.00 37.96 2.23
2720 3123 7.393515 CCCTAAAGACTAAAACTTTGGCTATGT 59.606 37.037 0.00 0.00 37.96 2.29
2721 3124 8.793592 CCTAAAGACTAAAACTTTGGCTATGTT 58.206 33.333 0.00 0.00 37.96 2.71
2722 3125 9.612620 CTAAAGACTAAAACTTTGGCTATGTTG 57.387 33.333 0.00 0.00 37.96 3.33
2723 3126 6.575162 AGACTAAAACTTTGGCTATGTTGG 57.425 37.500 1.38 0.00 0.00 3.77
2724 3127 5.476945 AGACTAAAACTTTGGCTATGTTGGG 59.523 40.000 1.38 0.00 0.00 4.12
2725 3128 5.144832 ACTAAAACTTTGGCTATGTTGGGT 58.855 37.500 1.38 0.00 0.00 4.51
2726 3129 5.600898 ACTAAAACTTTGGCTATGTTGGGTT 59.399 36.000 1.38 0.00 0.00 4.11
2727 3130 4.600692 AAACTTTGGCTATGTTGGGTTC 57.399 40.909 1.38 0.00 0.00 3.62
2728 3131 2.525368 ACTTTGGCTATGTTGGGTTCC 58.475 47.619 0.00 0.00 0.00 3.62
2729 3132 1.472480 CTTTGGCTATGTTGGGTTCCG 59.528 52.381 0.00 0.00 0.00 4.30
2730 3133 0.402504 TTGGCTATGTTGGGTTCCGT 59.597 50.000 0.00 0.00 0.00 4.69
2731 3134 0.035820 TGGCTATGTTGGGTTCCGTC 60.036 55.000 0.00 0.00 0.00 4.79
2732 3135 0.035820 GGCTATGTTGGGTTCCGTCA 60.036 55.000 0.00 0.00 0.00 4.35
2733 3136 1.612199 GGCTATGTTGGGTTCCGTCAA 60.612 52.381 0.00 0.00 0.00 3.18
2734 3137 1.467342 GCTATGTTGGGTTCCGTCAAC 59.533 52.381 0.00 0.00 42.38 3.18
2735 3138 1.730064 CTATGTTGGGTTCCGTCAACG 59.270 52.381 0.00 0.00 44.28 4.10
2736 3139 0.179040 ATGTTGGGTTCCGTCAACGT 60.179 50.000 1.48 0.00 44.28 3.99
2737 3140 0.810823 TGTTGGGTTCCGTCAACGTC 60.811 55.000 1.48 0.00 44.28 4.34
2738 3141 0.810823 GTTGGGTTCCGTCAACGTCA 60.811 55.000 1.48 0.00 35.59 4.35
2739 3142 0.107800 TTGGGTTCCGTCAACGTCAA 60.108 50.000 1.48 0.00 35.59 3.18
2740 3143 0.810823 TGGGTTCCGTCAACGTCAAC 60.811 55.000 1.48 4.30 35.59 3.18
2741 3144 0.810823 GGGTTCCGTCAACGTCAACA 60.811 55.000 13.41 0.00 35.59 3.33
2742 3145 1.008329 GGTTCCGTCAACGTCAACAA 58.992 50.000 13.41 0.00 35.59 2.83
2743 3146 1.267682 GGTTCCGTCAACGTCAACAAC 60.268 52.381 13.41 0.00 35.59 3.32
2744 3147 1.008329 TTCCGTCAACGTCAACAACC 58.992 50.000 1.48 0.00 37.74 3.77
2745 3148 0.810823 TCCGTCAACGTCAACAACCC 60.811 55.000 1.48 0.00 37.74 4.11
2746 3149 1.644913 CGTCAACGTCAACAACCCC 59.355 57.895 0.00 0.00 34.11 4.95
2747 3150 0.812412 CGTCAACGTCAACAACCCCT 60.812 55.000 0.00 0.00 34.11 4.79
2748 3151 1.538634 CGTCAACGTCAACAACCCCTA 60.539 52.381 0.00 0.00 34.11 3.53
2749 3152 2.563702 GTCAACGTCAACAACCCCTAA 58.436 47.619 0.00 0.00 0.00 2.69
2750 3153 2.944349 GTCAACGTCAACAACCCCTAAA 59.056 45.455 0.00 0.00 0.00 1.85
2751 3154 3.002965 GTCAACGTCAACAACCCCTAAAG 59.997 47.826 0.00 0.00 0.00 1.85
2752 3155 3.118334 TCAACGTCAACAACCCCTAAAGA 60.118 43.478 0.00 0.00 0.00 2.52
2753 3156 2.842457 ACGTCAACAACCCCTAAAGAC 58.158 47.619 0.00 0.00 0.00 3.01
2754 3157 2.436911 ACGTCAACAACCCCTAAAGACT 59.563 45.455 0.00 0.00 0.00 3.24
2755 3158 3.642848 ACGTCAACAACCCCTAAAGACTA 59.357 43.478 0.00 0.00 0.00 2.59
2756 3159 4.101430 ACGTCAACAACCCCTAAAGACTAA 59.899 41.667 0.00 0.00 0.00 2.24
2757 3160 5.058490 CGTCAACAACCCCTAAAGACTAAA 58.942 41.667 0.00 0.00 0.00 1.85
2758 3161 5.528320 CGTCAACAACCCCTAAAGACTAAAA 59.472 40.000 0.00 0.00 0.00 1.52
2759 3162 6.512253 CGTCAACAACCCCTAAAGACTAAAAC 60.512 42.308 0.00 0.00 0.00 2.43
2760 3163 6.544931 GTCAACAACCCCTAAAGACTAAAACT 59.455 38.462 0.00 0.00 0.00 2.66
2761 3164 7.067859 GTCAACAACCCCTAAAGACTAAAACTT 59.932 37.037 0.00 0.00 0.00 2.66
2762 3165 7.616542 TCAACAACCCCTAAAGACTAAAACTTT 59.383 33.333 0.00 0.00 40.13 2.66
2763 3166 7.342769 ACAACCCCTAAAGACTAAAACTTTG 57.657 36.000 0.00 0.00 37.96 2.77
2764 3167 6.322969 ACAACCCCTAAAGACTAAAACTTTGG 59.677 38.462 0.00 0.00 37.96 3.28
2765 3168 6.022107 ACCCCTAAAGACTAAAACTTTGGT 57.978 37.500 0.00 0.00 37.96 3.67
2766 3169 6.437755 ACCCCTAAAGACTAAAACTTTGGTT 58.562 36.000 0.00 0.00 37.96 3.67
2879 3543 6.553953 AAACTTTGGTTATGTTGGGTTTCT 57.446 33.333 0.00 0.00 34.90 2.52
2958 3622 5.299949 GTCGACAACCCCTAAAGACTAAAA 58.700 41.667 11.55 0.00 0.00 1.52
3029 3743 2.888414 ACTTTGGTTATGTTGGGTTCCG 59.112 45.455 0.00 0.00 0.00 4.30
3030 3744 2.660670 TTGGTTATGTTGGGTTCCGT 57.339 45.000 0.00 0.00 0.00 4.69
3031 3745 2.188062 TGGTTATGTTGGGTTCCGTC 57.812 50.000 0.00 0.00 0.00 4.79
3032 3746 1.081094 GGTTATGTTGGGTTCCGTCG 58.919 55.000 0.00 0.00 0.00 5.12
3033 3747 1.338011 GGTTATGTTGGGTTCCGTCGA 60.338 52.381 0.00 0.00 0.00 4.20
3034 3748 1.728425 GTTATGTTGGGTTCCGTCGAC 59.272 52.381 5.18 5.18 0.00 4.20
3035 3749 0.109179 TATGTTGGGTTCCGTCGACG 60.109 55.000 30.33 30.33 39.44 5.12
3036 3750 2.028043 GTTGGGTTCCGTCGACGT 59.972 61.111 33.49 0.00 37.74 4.34
3037 3751 2.018324 GTTGGGTTCCGTCGACGTC 61.018 63.158 33.49 22.69 37.74 4.34
3038 3752 3.541093 TTGGGTTCCGTCGACGTCG 62.541 63.158 33.49 31.30 41.45 5.12
3047 3761 2.595463 TCGACGTCGACAACCCCT 60.595 61.111 34.97 0.00 44.22 4.79
3048 3762 1.302431 TCGACGTCGACAACCCCTA 60.302 57.895 34.97 11.39 44.22 3.53
3049 3763 0.888736 TCGACGTCGACAACCCCTAA 60.889 55.000 34.97 10.59 44.22 2.69
3050 3764 0.039256 CGACGTCGACAACCCCTAAA 60.039 55.000 33.35 0.00 43.02 1.85
3051 3765 1.706443 GACGTCGACAACCCCTAAAG 58.294 55.000 17.16 0.00 0.00 1.85
3052 3766 1.270550 GACGTCGACAACCCCTAAAGA 59.729 52.381 17.16 0.00 0.00 2.52
3053 3767 1.000171 ACGTCGACAACCCCTAAAGAC 60.000 52.381 17.16 0.00 0.00 3.01
3054 3768 1.271656 CGTCGACAACCCCTAAAGACT 59.728 52.381 17.16 0.00 0.00 3.24
3055 3769 2.489329 CGTCGACAACCCCTAAAGACTA 59.511 50.000 17.16 0.00 0.00 2.59
3056 3770 3.057315 CGTCGACAACCCCTAAAGACTAA 60.057 47.826 17.16 0.00 0.00 2.24
3057 3771 4.559300 CGTCGACAACCCCTAAAGACTAAA 60.559 45.833 17.16 0.00 0.00 1.85
3058 3772 4.687948 GTCGACAACCCCTAAAGACTAAAC 59.312 45.833 11.55 0.00 0.00 2.01
3059 3773 3.999001 CGACAACCCCTAAAGACTAAACC 59.001 47.826 0.00 0.00 0.00 3.27
3060 3774 4.262765 CGACAACCCCTAAAGACTAAACCT 60.263 45.833 0.00 0.00 0.00 3.50
3061 3775 5.628130 GACAACCCCTAAAGACTAAACCTT 58.372 41.667 0.00 0.00 0.00 3.50
3062 3776 6.022107 ACAACCCCTAAAGACTAAACCTTT 57.978 37.500 0.00 0.00 37.57 3.11
3063 3777 5.831525 ACAACCCCTAAAGACTAAACCTTTG 59.168 40.000 0.00 0.00 35.65 2.77
3064 3778 4.994282 ACCCCTAAAGACTAAACCTTTGG 58.006 43.478 0.00 0.00 35.65 3.28
3065 3779 3.762288 CCCCTAAAGACTAAACCTTTGGC 59.238 47.826 0.00 0.00 35.65 4.52
3066 3780 4.508584 CCCCTAAAGACTAAACCTTTGGCT 60.509 45.833 0.00 0.00 35.65 4.75
3067 3781 5.280830 CCCCTAAAGACTAAACCTTTGGCTA 60.281 44.000 0.00 0.00 35.65 3.93
3068 3782 6.424032 CCCTAAAGACTAAACCTTTGGCTAT 58.576 40.000 0.00 0.00 35.65 2.97
3069 3783 6.318900 CCCTAAAGACTAAACCTTTGGCTATG 59.681 42.308 0.00 0.00 35.65 2.23
3070 3784 6.884836 CCTAAAGACTAAACCTTTGGCTATGT 59.115 38.462 0.00 0.00 35.65 2.29
3071 3785 7.393515 CCTAAAGACTAAACCTTTGGCTATGTT 59.606 37.037 0.00 0.00 35.65 2.71
3072 3786 6.575162 AAGACTAAACCTTTGGCTATGTTG 57.425 37.500 0.00 0.00 0.00 3.33
3073 3787 5.010282 AGACTAAACCTTTGGCTATGTTGG 58.990 41.667 0.00 0.00 0.00 3.77
3074 3788 4.086457 ACTAAACCTTTGGCTATGTTGGG 58.914 43.478 0.00 0.00 0.00 4.12
3075 3789 2.694616 AACCTTTGGCTATGTTGGGT 57.305 45.000 0.00 0.00 0.00 4.51
3076 3790 2.694616 ACCTTTGGCTATGTTGGGTT 57.305 45.000 0.00 0.00 0.00 4.11
3077 3791 2.525368 ACCTTTGGCTATGTTGGGTTC 58.475 47.619 0.00 0.00 0.00 3.62
3078 3792 1.824852 CCTTTGGCTATGTTGGGTTCC 59.175 52.381 0.00 0.00 0.00 3.62
3108 3822 4.687948 GTCGACAACCCCTAAAGACTAAAC 59.312 45.833 11.55 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 9.270576 CGCTTACGTTGTCTATACGATAATATT 57.729 33.333 0.00 0.00 41.33 1.28
13 14 8.659491 TCGCTTACGTTGTCTATACGATAATAT 58.341 33.333 0.00 0.00 41.33 1.28
14 15 7.952101 GTCGCTTACGTTGTCTATACGATAATA 59.048 37.037 0.00 0.00 41.33 0.98
15 16 6.794158 GTCGCTTACGTTGTCTATACGATAAT 59.206 38.462 0.00 0.00 41.33 1.28
16 17 6.129393 GTCGCTTACGTTGTCTATACGATAA 58.871 40.000 0.00 0.00 41.33 1.75
17 18 5.333339 GGTCGCTTACGTTGTCTATACGATA 60.333 44.000 0.00 0.00 41.33 2.92
18 19 4.521943 GTCGCTTACGTTGTCTATACGAT 58.478 43.478 0.00 0.00 41.33 3.73
19 20 3.242413 GGTCGCTTACGTTGTCTATACGA 60.242 47.826 0.00 0.00 41.33 3.43
20 21 3.031812 GGTCGCTTACGTTGTCTATACG 58.968 50.000 0.00 0.00 44.20 3.06
21 22 3.181497 TGGGTCGCTTACGTTGTCTATAC 60.181 47.826 0.00 0.00 41.18 1.47
22 23 3.016031 TGGGTCGCTTACGTTGTCTATA 58.984 45.455 0.00 0.00 41.18 1.31
23 24 1.820519 TGGGTCGCTTACGTTGTCTAT 59.179 47.619 0.00 0.00 41.18 1.98
24 25 1.246649 TGGGTCGCTTACGTTGTCTA 58.753 50.000 0.00 0.00 41.18 2.59
25 26 0.390124 TTGGGTCGCTTACGTTGTCT 59.610 50.000 0.00 0.00 41.18 3.41
26 27 1.435577 ATTGGGTCGCTTACGTTGTC 58.564 50.000 0.00 0.00 41.18 3.18
27 28 2.747396 TATTGGGTCGCTTACGTTGT 57.253 45.000 0.00 0.00 41.18 3.32
28 29 2.997986 ACTTATTGGGTCGCTTACGTTG 59.002 45.455 0.00 0.00 41.18 4.10
29 30 3.323751 ACTTATTGGGTCGCTTACGTT 57.676 42.857 0.00 0.00 41.18 3.99
30 31 3.323751 AACTTATTGGGTCGCTTACGT 57.676 42.857 0.00 0.00 41.18 3.57
31 32 3.680937 TCAAACTTATTGGGTCGCTTACG 59.319 43.478 0.00 0.00 42.01 3.18
32 33 4.694037 AGTCAAACTTATTGGGTCGCTTAC 59.306 41.667 0.00 0.00 0.00 2.34
33 34 4.901868 AGTCAAACTTATTGGGTCGCTTA 58.098 39.130 0.00 0.00 0.00 3.09
34 35 3.751518 AGTCAAACTTATTGGGTCGCTT 58.248 40.909 0.00 0.00 0.00 4.68
35 36 3.418684 AGTCAAACTTATTGGGTCGCT 57.581 42.857 0.00 0.00 0.00 4.93
36 37 5.410439 TCTTAAGTCAAACTTATTGGGTCGC 59.590 40.000 1.63 0.00 40.08 5.19
37 38 7.386848 TCTTCTTAAGTCAAACTTATTGGGTCG 59.613 37.037 1.63 0.00 40.08 4.79
38 39 8.617290 TCTTCTTAAGTCAAACTTATTGGGTC 57.383 34.615 1.63 0.00 40.08 4.46
39 40 8.990163 TTCTTCTTAAGTCAAACTTATTGGGT 57.010 30.769 1.63 0.00 40.08 4.51
69 70 5.593095 GGTACTGGAAGGTCTTTGTCTTTTT 59.407 40.000 0.00 0.00 39.30 1.94
70 71 5.131067 GGTACTGGAAGGTCTTTGTCTTTT 58.869 41.667 0.00 0.00 39.30 2.27
71 72 4.165372 TGGTACTGGAAGGTCTTTGTCTTT 59.835 41.667 0.00 0.00 39.30 2.52
72 73 3.714798 TGGTACTGGAAGGTCTTTGTCTT 59.285 43.478 0.00 0.00 39.30 3.01
73 74 3.314693 TGGTACTGGAAGGTCTTTGTCT 58.685 45.455 0.00 0.00 39.30 3.41
74 75 3.764237 TGGTACTGGAAGGTCTTTGTC 57.236 47.619 0.00 0.00 39.30 3.18
75 76 5.250774 ACATATGGTACTGGAAGGTCTTTGT 59.749 40.000 7.80 0.00 39.30 2.83
76 77 5.745227 ACATATGGTACTGGAAGGTCTTTG 58.255 41.667 7.80 0.00 39.30 2.77
77 78 6.388619 AACATATGGTACTGGAAGGTCTTT 57.611 37.500 7.80 0.00 39.30 2.52
78 79 5.104485 GGAACATATGGTACTGGAAGGTCTT 60.104 44.000 7.80 0.00 39.30 3.01
79 80 4.409247 GGAACATATGGTACTGGAAGGTCT 59.591 45.833 7.80 0.00 39.30 3.85
80 81 4.163458 TGGAACATATGGTACTGGAAGGTC 59.837 45.833 4.20 0.00 39.30 3.85
81 82 4.108570 TGGAACATATGGTACTGGAAGGT 58.891 43.478 4.20 0.00 39.30 3.50
82 83 4.164221 ACTGGAACATATGGTACTGGAAGG 59.836 45.833 13.87 0.00 35.90 3.46
83 84 5.359194 ACTGGAACATATGGTACTGGAAG 57.641 43.478 13.87 0.97 38.20 3.46
84 85 5.496556 CAACTGGAACATATGGTACTGGAA 58.503 41.667 13.87 0.00 38.20 3.53
85 86 4.080582 CCAACTGGAACATATGGTACTGGA 60.081 45.833 13.87 0.00 38.60 3.86
86 87 4.080582 TCCAACTGGAACATATGGTACTGG 60.081 45.833 13.87 8.84 42.37 4.00
87 88 5.097742 TCCAACTGGAACATATGGTACTG 57.902 43.478 8.26 8.26 42.37 2.74
100 101 4.072131 GTCTTATTGCAAGTCCAACTGGA 58.928 43.478 4.94 0.00 43.08 3.86
101 102 3.820467 TGTCTTATTGCAAGTCCAACTGG 59.180 43.478 4.94 0.00 0.00 4.00
102 103 5.392380 GGATGTCTTATTGCAAGTCCAACTG 60.392 44.000 4.94 0.00 0.00 3.16
103 104 4.702131 GGATGTCTTATTGCAAGTCCAACT 59.298 41.667 4.94 0.00 0.00 3.16
104 105 4.437390 CGGATGTCTTATTGCAAGTCCAAC 60.437 45.833 4.94 0.17 0.00 3.77
105 106 3.689161 CGGATGTCTTATTGCAAGTCCAA 59.311 43.478 4.94 0.00 0.00 3.53
106 107 3.055458 TCGGATGTCTTATTGCAAGTCCA 60.055 43.478 4.94 0.00 0.00 4.02
107 108 3.531538 TCGGATGTCTTATTGCAAGTCC 58.468 45.455 4.94 3.04 0.00 3.85
108 109 4.494855 GCTTCGGATGTCTTATTGCAAGTC 60.495 45.833 4.94 0.00 0.00 3.01
109 110 3.375299 GCTTCGGATGTCTTATTGCAAGT 59.625 43.478 4.94 0.00 0.00 3.16
110 111 3.624861 AGCTTCGGATGTCTTATTGCAAG 59.375 43.478 4.94 0.00 0.00 4.01
111 112 3.609853 AGCTTCGGATGTCTTATTGCAA 58.390 40.909 0.00 0.00 0.00 4.08
112 113 3.266510 AGCTTCGGATGTCTTATTGCA 57.733 42.857 0.00 0.00 0.00 4.08
113 114 3.623060 TGAAGCTTCGGATGTCTTATTGC 59.377 43.478 21.11 0.00 0.00 3.56
114 115 5.277683 CCATGAAGCTTCGGATGTCTTATTG 60.278 44.000 21.11 3.02 0.00 1.90
115 116 4.818546 CCATGAAGCTTCGGATGTCTTATT 59.181 41.667 21.11 0.00 0.00 1.40
116 117 4.141620 ACCATGAAGCTTCGGATGTCTTAT 60.142 41.667 22.70 5.96 0.00 1.73
117 118 3.197766 ACCATGAAGCTTCGGATGTCTTA 59.802 43.478 22.70 3.88 0.00 2.10
118 119 2.026822 ACCATGAAGCTTCGGATGTCTT 60.027 45.455 22.70 7.03 0.00 3.01
119 120 1.556911 ACCATGAAGCTTCGGATGTCT 59.443 47.619 22.70 7.57 0.00 3.41
120 121 2.029838 ACCATGAAGCTTCGGATGTC 57.970 50.000 22.70 0.08 0.00 3.06
121 122 2.086869 CAACCATGAAGCTTCGGATGT 58.913 47.619 22.70 14.04 0.00 3.06
122 123 1.202222 GCAACCATGAAGCTTCGGATG 60.202 52.381 22.70 21.08 0.00 3.51
123 124 1.098050 GCAACCATGAAGCTTCGGAT 58.902 50.000 22.70 11.36 0.00 4.18
124 125 0.036732 AGCAACCATGAAGCTTCGGA 59.963 50.000 22.70 8.04 34.37 4.55
125 126 0.169672 CAGCAACCATGAAGCTTCGG 59.830 55.000 21.11 18.51 36.26 4.30
126 127 1.159285 TCAGCAACCATGAAGCTTCG 58.841 50.000 21.11 9.89 36.26 3.79
127 128 2.159282 CCATCAGCAACCATGAAGCTTC 60.159 50.000 19.89 19.89 36.26 3.86
128 129 1.822990 CCATCAGCAACCATGAAGCTT 59.177 47.619 0.00 0.00 36.26 3.74
129 130 1.272313 ACCATCAGCAACCATGAAGCT 60.272 47.619 0.00 0.00 39.63 3.74
130 131 1.135199 CACCATCAGCAACCATGAAGC 60.135 52.381 0.00 0.00 0.00 3.86
131 132 1.475280 CCACCATCAGCAACCATGAAG 59.525 52.381 0.00 0.00 0.00 3.02
132 133 1.548081 CCACCATCAGCAACCATGAA 58.452 50.000 0.00 0.00 0.00 2.57
133 134 0.323633 CCCACCATCAGCAACCATGA 60.324 55.000 0.00 0.00 0.00 3.07
134 135 1.952102 GCCCACCATCAGCAACCATG 61.952 60.000 0.00 0.00 0.00 3.66
135 136 1.683365 GCCCACCATCAGCAACCAT 60.683 57.895 0.00 0.00 0.00 3.55
136 137 2.283101 GCCCACCATCAGCAACCA 60.283 61.111 0.00 0.00 0.00 3.67
137 138 3.443045 CGCCCACCATCAGCAACC 61.443 66.667 0.00 0.00 0.00 3.77
138 139 2.672996 ACGCCCACCATCAGCAAC 60.673 61.111 0.00 0.00 0.00 4.17
139 140 2.672651 CACGCCCACCATCAGCAA 60.673 61.111 0.00 0.00 0.00 3.91
140 141 4.720902 CCACGCCCACCATCAGCA 62.721 66.667 0.00 0.00 0.00 4.41
141 142 4.722700 ACCACGCCCACCATCAGC 62.723 66.667 0.00 0.00 0.00 4.26
142 143 2.541547 ATCACCACGCCCACCATCAG 62.542 60.000 0.00 0.00 0.00 2.90
143 144 2.601702 ATCACCACGCCCACCATCA 61.602 57.895 0.00 0.00 0.00 3.07
144 145 2.114670 CATCACCACGCCCACCATC 61.115 63.158 0.00 0.00 0.00 3.51
145 146 2.045045 CATCACCACGCCCACCAT 60.045 61.111 0.00 0.00 0.00 3.55
147 148 4.722700 AGCATCACCACGCCCACC 62.723 66.667 0.00 0.00 0.00 4.61
148 149 3.434319 CAGCATCACCACGCCCAC 61.434 66.667 0.00 0.00 0.00 4.61
149 150 3.490031 AACAGCATCACCACGCCCA 62.490 57.895 0.00 0.00 0.00 5.36
150 151 2.672996 AACAGCATCACCACGCCC 60.673 61.111 0.00 0.00 0.00 6.13
151 152 1.965930 TCAACAGCATCACCACGCC 60.966 57.895 0.00 0.00 0.00 5.68
152 153 1.207593 GTCAACAGCATCACCACGC 59.792 57.895 0.00 0.00 0.00 5.34
153 154 1.159285 ATGTCAACAGCATCACCACG 58.841 50.000 0.00 0.00 0.00 4.94
154 155 3.004629 TCAAATGTCAACAGCATCACCAC 59.995 43.478 0.00 0.00 0.00 4.16
155 156 3.004629 GTCAAATGTCAACAGCATCACCA 59.995 43.478 0.00 0.00 0.00 4.17
156 157 3.004629 TGTCAAATGTCAACAGCATCACC 59.995 43.478 0.00 0.00 0.00 4.02
157 158 4.023792 TCTGTCAAATGTCAACAGCATCAC 60.024 41.667 0.00 0.00 40.15 3.06
158 159 4.136051 TCTGTCAAATGTCAACAGCATCA 58.864 39.130 0.00 0.00 40.15 3.07
159 160 4.754372 TCTGTCAAATGTCAACAGCATC 57.246 40.909 0.00 0.00 40.15 3.91
160 161 5.124457 GGTATCTGTCAAATGTCAACAGCAT 59.876 40.000 0.00 0.00 40.15 3.79
161 162 4.455533 GGTATCTGTCAAATGTCAACAGCA 59.544 41.667 0.00 0.00 40.15 4.41
162 163 4.455533 TGGTATCTGTCAAATGTCAACAGC 59.544 41.667 0.00 0.00 40.15 4.40
163 164 5.106555 GGTGGTATCTGTCAAATGTCAACAG 60.107 44.000 0.00 0.00 41.38 3.16
164 165 4.759693 GGTGGTATCTGTCAAATGTCAACA 59.240 41.667 0.00 0.00 0.00 3.33
165 166 4.142902 CGGTGGTATCTGTCAAATGTCAAC 60.143 45.833 0.00 0.00 0.00 3.18
166 167 4.000325 CGGTGGTATCTGTCAAATGTCAA 59.000 43.478 0.00 0.00 0.00 3.18
167 168 3.595173 CGGTGGTATCTGTCAAATGTCA 58.405 45.455 0.00 0.00 0.00 3.58
168 169 2.936498 CCGGTGGTATCTGTCAAATGTC 59.064 50.000 0.00 0.00 0.00 3.06
169 170 2.939640 GCCGGTGGTATCTGTCAAATGT 60.940 50.000 1.90 0.00 0.00 2.71
170 171 1.670811 GCCGGTGGTATCTGTCAAATG 59.329 52.381 1.90 0.00 0.00 2.32
171 172 1.559682 AGCCGGTGGTATCTGTCAAAT 59.440 47.619 1.90 0.00 0.00 2.32
172 173 0.981183 AGCCGGTGGTATCTGTCAAA 59.019 50.000 1.90 0.00 0.00 2.69
173 174 0.535335 GAGCCGGTGGTATCTGTCAA 59.465 55.000 1.90 0.00 0.00 3.18
174 175 0.324368 AGAGCCGGTGGTATCTGTCA 60.324 55.000 1.90 0.00 0.00 3.58
175 176 1.337387 GTAGAGCCGGTGGTATCTGTC 59.663 57.143 1.90 0.00 0.00 3.51
176 177 1.400737 GTAGAGCCGGTGGTATCTGT 58.599 55.000 1.90 0.00 0.00 3.41
177 178 0.311165 CGTAGAGCCGGTGGTATCTG 59.689 60.000 1.90 0.00 0.00 2.90
178 179 0.822532 CCGTAGAGCCGGTGGTATCT 60.823 60.000 1.90 1.92 43.07 1.98
179 180 1.658673 CCGTAGAGCCGGTGGTATC 59.341 63.158 1.90 0.00 43.07 2.24
180 181 3.851955 CCGTAGAGCCGGTGGTAT 58.148 61.111 1.90 0.00 43.07 2.73
187 188 0.822532 ATACCCTGTCCGTAGAGCCG 60.823 60.000 0.00 0.00 0.00 5.52
188 189 0.674534 CATACCCTGTCCGTAGAGCC 59.325 60.000 0.00 0.00 0.00 4.70
189 190 0.032267 GCATACCCTGTCCGTAGAGC 59.968 60.000 0.00 0.00 0.00 4.09
190 191 0.674534 GGCATACCCTGTCCGTAGAG 59.325 60.000 0.00 0.00 0.00 2.43
191 192 2.816746 GGCATACCCTGTCCGTAGA 58.183 57.895 0.00 0.00 0.00 2.59
209 210 3.969250 ATTACACGGGCGGCAGTGG 62.969 63.158 36.92 23.00 42.25 4.00
210 211 1.582610 AAATTACACGGGCGGCAGTG 61.583 55.000 34.02 34.02 43.46 3.66
211 212 0.891904 AAAATTACACGGGCGGCAGT 60.892 50.000 12.47 10.88 0.00 4.40
212 213 0.179174 GAAAATTACACGGGCGGCAG 60.179 55.000 12.47 10.04 0.00 4.85
213 214 0.606944 AGAAAATTACACGGGCGGCA 60.607 50.000 12.47 0.00 0.00 5.69
214 215 0.524414 AAGAAAATTACACGGGCGGC 59.476 50.000 0.00 0.00 0.00 6.53
215 216 2.081462 AGAAGAAAATTACACGGGCGG 58.919 47.619 0.00 0.00 0.00 6.13
216 217 2.482721 ACAGAAGAAAATTACACGGGCG 59.517 45.455 0.00 0.00 0.00 6.13
217 218 4.933400 TCTACAGAAGAAAATTACACGGGC 59.067 41.667 0.00 0.00 0.00 6.13
218 219 6.425721 TGTTCTACAGAAGAAAATTACACGGG 59.574 38.462 0.00 0.00 45.78 5.28
219 220 7.416154 TGTTCTACAGAAGAAAATTACACGG 57.584 36.000 0.00 0.00 45.78 4.94
220 221 8.708742 TCATGTTCTACAGAAGAAAATTACACG 58.291 33.333 0.00 0.00 45.78 4.49
225 226 9.512588 ACTCATCATGTTCTACAGAAGAAAATT 57.487 29.630 0.00 0.00 45.78 1.82
237 238 9.639601 CCGCTTTATTATACTCATCATGTTCTA 57.360 33.333 0.00 0.00 0.00 2.10
238 239 7.118390 GCCGCTTTATTATACTCATCATGTTCT 59.882 37.037 0.00 0.00 0.00 3.01
239 240 7.237173 GCCGCTTTATTATACTCATCATGTTC 58.763 38.462 0.00 0.00 0.00 3.18
240 241 6.149474 GGCCGCTTTATTATACTCATCATGTT 59.851 38.462 0.00 0.00 0.00 2.71
241 242 5.643777 GGCCGCTTTATTATACTCATCATGT 59.356 40.000 0.00 0.00 0.00 3.21
242 243 5.643348 TGGCCGCTTTATTATACTCATCATG 59.357 40.000 0.00 0.00 0.00 3.07
243 244 5.804639 TGGCCGCTTTATTATACTCATCAT 58.195 37.500 0.00 0.00 0.00 2.45
244 245 5.222079 TGGCCGCTTTATTATACTCATCA 57.778 39.130 0.00 0.00 0.00 3.07
245 246 6.426937 TCTTTGGCCGCTTTATTATACTCATC 59.573 38.462 0.00 0.00 0.00 2.92
246 247 6.296026 TCTTTGGCCGCTTTATTATACTCAT 58.704 36.000 0.00 0.00 0.00 2.90
247 248 5.676552 TCTTTGGCCGCTTTATTATACTCA 58.323 37.500 0.00 0.00 0.00 3.41
248 249 5.989777 TCTCTTTGGCCGCTTTATTATACTC 59.010 40.000 0.00 0.00 0.00 2.59
249 250 5.925509 TCTCTTTGGCCGCTTTATTATACT 58.074 37.500 0.00 0.00 0.00 2.12
250 251 6.427974 GTTCTCTTTGGCCGCTTTATTATAC 58.572 40.000 0.00 0.00 0.00 1.47
251 252 5.235616 CGTTCTCTTTGGCCGCTTTATTATA 59.764 40.000 0.00 0.00 0.00 0.98
252 253 4.035208 CGTTCTCTTTGGCCGCTTTATTAT 59.965 41.667 0.00 0.00 0.00 1.28
253 254 3.372822 CGTTCTCTTTGGCCGCTTTATTA 59.627 43.478 0.00 0.00 0.00 0.98
254 255 2.161609 CGTTCTCTTTGGCCGCTTTATT 59.838 45.455 0.00 0.00 0.00 1.40
255 256 1.737793 CGTTCTCTTTGGCCGCTTTAT 59.262 47.619 0.00 0.00 0.00 1.40
256 257 1.153353 CGTTCTCTTTGGCCGCTTTA 58.847 50.000 0.00 0.00 0.00 1.85
257 258 0.534203 TCGTTCTCTTTGGCCGCTTT 60.534 50.000 0.00 0.00 0.00 3.51
258 259 0.534203 TTCGTTCTCTTTGGCCGCTT 60.534 50.000 0.00 0.00 0.00 4.68
259 260 1.070786 TTCGTTCTCTTTGGCCGCT 59.929 52.632 0.00 0.00 0.00 5.52
260 261 1.206831 GTTCGTTCTCTTTGGCCGC 59.793 57.895 0.00 0.00 0.00 6.53
261 262 0.512952 CAGTTCGTTCTCTTTGGCCG 59.487 55.000 0.00 0.00 0.00 6.13
262 263 1.878953 TCAGTTCGTTCTCTTTGGCC 58.121 50.000 0.00 0.00 0.00 5.36
263 264 4.691216 AGTAATCAGTTCGTTCTCTTTGGC 59.309 41.667 0.00 0.00 0.00 4.52
264 265 5.926542 TCAGTAATCAGTTCGTTCTCTTTGG 59.073 40.000 0.00 0.00 0.00 3.28
265 266 6.642950 ACTCAGTAATCAGTTCGTTCTCTTTG 59.357 38.462 0.00 0.00 0.00 2.77
266 267 6.750148 ACTCAGTAATCAGTTCGTTCTCTTT 58.250 36.000 0.00 0.00 0.00 2.52
267 268 6.334102 ACTCAGTAATCAGTTCGTTCTCTT 57.666 37.500 0.00 0.00 0.00 2.85
268 269 5.968528 ACTCAGTAATCAGTTCGTTCTCT 57.031 39.130 0.00 0.00 0.00 3.10
269 270 6.609533 TGTACTCAGTAATCAGTTCGTTCTC 58.390 40.000 0.00 0.00 0.00 2.87
270 271 6.430308 TCTGTACTCAGTAATCAGTTCGTTCT 59.570 38.462 3.10 0.00 41.91 3.01
271 272 6.609533 TCTGTACTCAGTAATCAGTTCGTTC 58.390 40.000 3.10 0.00 41.91 3.95
272 273 6.570672 TCTGTACTCAGTAATCAGTTCGTT 57.429 37.500 3.10 0.00 41.91 3.85
273 274 6.207025 AGTTCTGTACTCAGTAATCAGTTCGT 59.793 38.462 3.10 0.00 41.91 3.85
274 275 6.613233 AGTTCTGTACTCAGTAATCAGTTCG 58.387 40.000 3.10 0.00 41.91 3.95
279 280 9.653287 CCAAATTAGTTCTGTACTCAGTAATCA 57.347 33.333 0.00 0.00 41.91 2.57
280 281 8.604890 GCCAAATTAGTTCTGTACTCAGTAATC 58.395 37.037 0.00 0.00 41.91 1.75
281 282 8.100791 TGCCAAATTAGTTCTGTACTCAGTAAT 58.899 33.333 0.00 0.00 41.91 1.89
282 283 7.446769 TGCCAAATTAGTTCTGTACTCAGTAA 58.553 34.615 0.00 0.00 41.91 2.24
283 284 6.999950 TGCCAAATTAGTTCTGTACTCAGTA 58.000 36.000 0.00 0.00 41.91 2.74
284 285 5.865085 TGCCAAATTAGTTCTGTACTCAGT 58.135 37.500 0.00 0.00 41.91 3.41
285 286 6.204688 TGTTGCCAAATTAGTTCTGTACTCAG 59.795 38.462 0.00 0.00 42.54 3.35
286 287 6.017440 GTGTTGCCAAATTAGTTCTGTACTCA 60.017 38.462 0.00 0.00 38.33 3.41
287 288 6.371389 GTGTTGCCAAATTAGTTCTGTACTC 58.629 40.000 0.00 0.00 38.33 2.59
288 289 5.049680 CGTGTTGCCAAATTAGTTCTGTACT 60.050 40.000 0.00 0.00 41.04 2.73
289 290 5.049954 TCGTGTTGCCAAATTAGTTCTGTAC 60.050 40.000 0.00 0.00 0.00 2.90
290 291 5.057819 TCGTGTTGCCAAATTAGTTCTGTA 58.942 37.500 0.00 0.00 0.00 2.74
291 292 3.880490 TCGTGTTGCCAAATTAGTTCTGT 59.120 39.130 0.00 0.00 0.00 3.41
292 293 4.481930 TCGTGTTGCCAAATTAGTTCTG 57.518 40.909 0.00 0.00 0.00 3.02
293 294 6.677920 GCATATCGTGTTGCCAAATTAGTTCT 60.678 38.462 0.00 0.00 32.66 3.01
294 295 5.455525 GCATATCGTGTTGCCAAATTAGTTC 59.544 40.000 0.00 0.00 32.66 3.01
295 296 5.105957 TGCATATCGTGTTGCCAAATTAGTT 60.106 36.000 0.00 0.00 38.08 2.24
296 297 4.397730 TGCATATCGTGTTGCCAAATTAGT 59.602 37.500 0.00 0.00 38.08 2.24
297 298 4.919206 TGCATATCGTGTTGCCAAATTAG 58.081 39.130 0.00 0.00 38.08 1.73
298 299 4.972514 TGCATATCGTGTTGCCAAATTA 57.027 36.364 0.00 0.00 38.08 1.40
299 300 3.865011 TGCATATCGTGTTGCCAAATT 57.135 38.095 0.00 0.00 38.08 1.82
300 301 3.193267 ACTTGCATATCGTGTTGCCAAAT 59.807 39.130 0.00 0.00 38.08 2.32
301 302 2.556189 ACTTGCATATCGTGTTGCCAAA 59.444 40.909 0.00 0.00 38.08 3.28
302 303 2.095314 CACTTGCATATCGTGTTGCCAA 60.095 45.455 0.00 0.00 38.08 4.52
303 304 1.468127 CACTTGCATATCGTGTTGCCA 59.532 47.619 0.00 0.00 38.08 4.92
304 305 1.795162 GCACTTGCATATCGTGTTGCC 60.795 52.381 0.00 0.00 41.59 4.52
305 306 1.538276 GCACTTGCATATCGTGTTGC 58.462 50.000 0.00 0.00 41.59 4.17
306 307 1.202177 GGGCACTTGCATATCGTGTTG 60.202 52.381 3.15 0.00 44.36 3.33
307 308 1.094785 GGGCACTTGCATATCGTGTT 58.905 50.000 3.15 0.00 44.36 3.32
308 309 0.035534 TGGGCACTTGCATATCGTGT 60.036 50.000 3.15 0.00 44.36 4.49
309 310 1.093972 TTGGGCACTTGCATATCGTG 58.906 50.000 3.15 0.00 44.36 4.35
310 311 1.832883 TTTGGGCACTTGCATATCGT 58.167 45.000 3.15 0.00 44.36 3.73
311 312 4.771590 ATATTTGGGCACTTGCATATCG 57.228 40.909 3.15 0.00 44.36 2.92
312 313 6.088016 TCAATATTTGGGCACTTGCATATC 57.912 37.500 3.15 0.00 44.36 1.63
313 314 6.482898 TTCAATATTTGGGCACTTGCATAT 57.517 33.333 3.15 0.00 44.36 1.78
314 315 5.929058 TTCAATATTTGGGCACTTGCATA 57.071 34.783 3.15 0.00 44.36 3.14
315 316 4.822685 TTCAATATTTGGGCACTTGCAT 57.177 36.364 3.15 0.00 44.36 3.96
316 317 4.613925 TTTCAATATTTGGGCACTTGCA 57.386 36.364 3.15 0.00 44.36 4.08
317 318 6.572519 TCTATTTCAATATTTGGGCACTTGC 58.427 36.000 0.00 0.00 41.14 4.01
318 319 9.903682 CTATCTATTTCAATATTTGGGCACTTG 57.096 33.333 0.00 0.00 0.00 3.16
319 320 9.646522 ACTATCTATTTCAATATTTGGGCACTT 57.353 29.630 0.00 0.00 0.00 3.16
322 323 9.739276 CCTACTATCTATTTCAATATTTGGGCA 57.261 33.333 0.00 0.00 0.00 5.36
323 324 9.740710 ACCTACTATCTATTTCAATATTTGGGC 57.259 33.333 0.00 0.00 0.00 5.36
333 334 9.836864 TCAACTACGTACCTACTATCTATTTCA 57.163 33.333 0.00 0.00 0.00 2.69
336 337 8.728833 GCATCAACTACGTACCTACTATCTATT 58.271 37.037 0.00 0.00 0.00 1.73
337 338 7.336427 GGCATCAACTACGTACCTACTATCTAT 59.664 40.741 0.00 0.00 0.00 1.98
338 339 6.652481 GGCATCAACTACGTACCTACTATCTA 59.348 42.308 0.00 0.00 0.00 1.98
339 340 5.472820 GGCATCAACTACGTACCTACTATCT 59.527 44.000 0.00 0.00 0.00 1.98
340 341 5.616424 CGGCATCAACTACGTACCTACTATC 60.616 48.000 0.00 0.00 0.00 2.08
341 342 4.214971 CGGCATCAACTACGTACCTACTAT 59.785 45.833 0.00 0.00 0.00 2.12
342 343 3.561310 CGGCATCAACTACGTACCTACTA 59.439 47.826 0.00 0.00 0.00 1.82
343 344 2.357009 CGGCATCAACTACGTACCTACT 59.643 50.000 0.00 0.00 0.00 2.57
344 345 2.542411 CCGGCATCAACTACGTACCTAC 60.542 54.545 0.00 0.00 0.00 3.18
345 346 1.677576 CCGGCATCAACTACGTACCTA 59.322 52.381 0.00 0.00 0.00 3.08
346 347 0.458669 CCGGCATCAACTACGTACCT 59.541 55.000 0.00 0.00 0.00 3.08
347 348 1.149964 GCCGGCATCAACTACGTACC 61.150 60.000 24.80 0.00 0.00 3.34
348 349 1.477030 CGCCGGCATCAACTACGTAC 61.477 60.000 28.98 0.00 0.00 3.67
349 350 1.226745 CGCCGGCATCAACTACGTA 60.227 57.895 28.98 0.00 0.00 3.57
350 351 2.508439 CGCCGGCATCAACTACGT 60.508 61.111 28.98 0.00 0.00 3.57
351 352 3.925238 GCGCCGGCATCAACTACG 61.925 66.667 28.98 7.61 39.62 3.51
352 353 1.644786 AAAGCGCCGGCATCAACTAC 61.645 55.000 28.98 4.42 43.41 2.73
353 354 1.376683 AAAGCGCCGGCATCAACTA 60.377 52.632 28.98 0.00 43.41 2.24
354 355 2.672996 AAAGCGCCGGCATCAACT 60.673 55.556 28.98 12.18 43.41 3.16
355 356 2.504681 CAAAGCGCCGGCATCAAC 60.505 61.111 28.98 9.84 43.41 3.18
356 357 2.470801 GAACAAAGCGCCGGCATCAA 62.471 55.000 28.98 0.00 43.41 2.57
357 358 2.976840 GAACAAAGCGCCGGCATCA 61.977 57.895 28.98 0.00 43.41 3.07
358 359 2.202479 GAACAAAGCGCCGGCATC 60.202 61.111 28.98 17.66 43.41 3.91
359 360 3.747976 GGAACAAAGCGCCGGCAT 61.748 61.111 28.98 11.96 43.41 4.40
362 363 3.431725 GAGGGAACAAAGCGCCGG 61.432 66.667 2.29 0.00 0.00 6.13
363 364 3.788766 CGAGGGAACAAAGCGCCG 61.789 66.667 2.29 0.00 0.00 6.46
364 365 4.103103 GCGAGGGAACAAAGCGCC 62.103 66.667 2.29 0.00 41.65 6.53
366 367 0.721718 CTTAGCGAGGGAACAAAGCG 59.278 55.000 0.00 0.00 0.00 4.68
367 368 0.448197 GCTTAGCGAGGGAACAAAGC 59.552 55.000 0.00 0.00 33.36 3.51
368 369 1.808411 TGCTTAGCGAGGGAACAAAG 58.192 50.000 0.00 0.00 0.00 2.77
369 370 1.877443 GTTGCTTAGCGAGGGAACAAA 59.123 47.619 8.29 0.00 34.67 2.83
370 371 1.202710 TGTTGCTTAGCGAGGGAACAA 60.203 47.619 12.87 0.00 39.92 2.83
371 372 0.394938 TGTTGCTTAGCGAGGGAACA 59.605 50.000 11.45 11.45 40.41 3.18
372 373 0.796927 GTGTTGCTTAGCGAGGGAAC 59.203 55.000 6.39 6.39 35.01 3.62
373 374 0.669318 CGTGTTGCTTAGCGAGGGAA 60.669 55.000 0.00 0.00 0.00 3.97
374 375 1.080093 CGTGTTGCTTAGCGAGGGA 60.080 57.895 0.00 0.00 0.00 4.20
375 376 0.460284 ATCGTGTTGCTTAGCGAGGG 60.460 55.000 0.00 0.00 36.79 4.30
376 377 2.203800 TATCGTGTTGCTTAGCGAGG 57.796 50.000 0.00 0.00 36.79 4.63
377 378 2.097202 GCATATCGTGTTGCTTAGCGAG 60.097 50.000 0.00 0.00 36.79 5.03
378 379 1.858458 GCATATCGTGTTGCTTAGCGA 59.142 47.619 0.00 0.00 35.95 4.93
379 380 1.860950 AGCATATCGTGTTGCTTAGCG 59.139 47.619 0.00 0.00 46.71 4.26
380 381 5.597813 ATTAGCATATCGTGTTGCTTAGC 57.402 39.130 12.46 0.00 46.71 3.09
381 382 7.382488 ACTGTATTAGCATATCGTGTTGCTTAG 59.618 37.037 12.46 7.69 46.71 2.18
382 383 7.207383 ACTGTATTAGCATATCGTGTTGCTTA 58.793 34.615 12.46 5.92 46.71 3.09
383 384 6.049149 ACTGTATTAGCATATCGTGTTGCTT 58.951 36.000 12.46 1.42 46.71 3.91
385 386 5.907197 ACTGTATTAGCATATCGTGTTGC 57.093 39.130 0.00 0.00 39.17 4.17
386 387 7.234187 ACAACTGTATTAGCATATCGTGTTG 57.766 36.000 0.00 0.00 37.60 3.33
387 388 6.479001 GGACAACTGTATTAGCATATCGTGTT 59.521 38.462 0.00 0.00 0.00 3.32
388 389 5.983720 GGACAACTGTATTAGCATATCGTGT 59.016 40.000 0.00 0.00 0.00 4.49
389 390 6.216569 AGGACAACTGTATTAGCATATCGTG 58.783 40.000 0.00 0.00 0.00 4.35
390 391 6.406692 AGGACAACTGTATTAGCATATCGT 57.593 37.500 0.00 0.00 0.00 3.73
391 392 7.328737 GGTAAGGACAACTGTATTAGCATATCG 59.671 40.741 9.77 0.00 32.55 2.92
392 393 7.328737 CGGTAAGGACAACTGTATTAGCATATC 59.671 40.741 12.94 0.00 32.16 1.63
393 394 7.152645 CGGTAAGGACAACTGTATTAGCATAT 58.847 38.462 12.94 0.00 32.16 1.78
394 395 6.461927 CCGGTAAGGACAACTGTATTAGCATA 60.462 42.308 0.00 0.00 45.00 3.14
395 396 5.357257 CGGTAAGGACAACTGTATTAGCAT 58.643 41.667 12.94 0.00 32.16 3.79
396 397 4.382254 CCGGTAAGGACAACTGTATTAGCA 60.382 45.833 0.00 0.00 45.00 3.49
397 398 4.117685 CCGGTAAGGACAACTGTATTAGC 58.882 47.826 0.00 6.49 45.00 3.09
398 399 5.126707 ACTCCGGTAAGGACAACTGTATTAG 59.873 44.000 0.00 0.00 45.98 1.73
399 400 5.018809 ACTCCGGTAAGGACAACTGTATTA 58.981 41.667 0.00 0.00 45.98 0.98
400 401 3.836562 ACTCCGGTAAGGACAACTGTATT 59.163 43.478 0.00 0.00 45.98 1.89
401 402 3.438183 ACTCCGGTAAGGACAACTGTAT 58.562 45.455 0.00 0.00 45.98 2.29
402 403 2.880443 ACTCCGGTAAGGACAACTGTA 58.120 47.619 0.00 0.00 45.98 2.74
403 404 1.713297 ACTCCGGTAAGGACAACTGT 58.287 50.000 0.00 0.00 45.98 3.55
404 405 3.846360 CTTACTCCGGTAAGGACAACTG 58.154 50.000 0.00 0.00 46.56 3.16
413 414 3.737559 TCCACTACCTTACTCCGGTAA 57.262 47.619 0.00 0.00 36.63 2.85
414 415 3.053395 ACATCCACTACCTTACTCCGGTA 60.053 47.826 0.00 0.00 35.98 4.02
415 416 2.292061 ACATCCACTACCTTACTCCGGT 60.292 50.000 0.00 0.00 38.55 5.28
416 417 2.361438 GACATCCACTACCTTACTCCGG 59.639 54.545 0.00 0.00 0.00 5.14
417 418 2.033049 CGACATCCACTACCTTACTCCG 59.967 54.545 0.00 0.00 0.00 4.63
418 419 2.361438 CCGACATCCACTACCTTACTCC 59.639 54.545 0.00 0.00 0.00 3.85
419 420 2.223758 GCCGACATCCACTACCTTACTC 60.224 54.545 0.00 0.00 0.00 2.59
420 421 1.755380 GCCGACATCCACTACCTTACT 59.245 52.381 0.00 0.00 0.00 2.24
421 422 1.535437 CGCCGACATCCACTACCTTAC 60.535 57.143 0.00 0.00 0.00 2.34
422 423 0.742505 CGCCGACATCCACTACCTTA 59.257 55.000 0.00 0.00 0.00 2.69
423 424 1.515954 CGCCGACATCCACTACCTT 59.484 57.895 0.00 0.00 0.00 3.50
424 425 3.077519 GCGCCGACATCCACTACCT 62.078 63.158 0.00 0.00 0.00 3.08
425 426 2.585247 GCGCCGACATCCACTACC 60.585 66.667 0.00 0.00 0.00 3.18
426 427 2.585247 GGCGCCGACATCCACTAC 60.585 66.667 12.58 0.00 0.00 2.73
427 428 2.758327 AGGCGCCGACATCCACTA 60.758 61.111 23.20 0.00 0.00 2.74
428 429 4.148825 GAGGCGCCGACATCCACT 62.149 66.667 23.20 0.00 0.00 4.00
446 447 3.471244 GATGAGGACGAGACGGCGG 62.471 68.421 13.24 0.00 34.63 6.13
447 448 2.024871 GATGAGGACGAGACGGCG 59.975 66.667 4.80 4.80 34.63 6.46
448 449 2.024871 CGATGAGGACGAGACGGC 59.975 66.667 0.00 0.00 0.00 5.68
449 450 1.090625 AGACGATGAGGACGAGACGG 61.091 60.000 0.00 0.00 34.70 4.79
450 451 0.302288 GAGACGATGAGGACGAGACG 59.698 60.000 0.00 0.00 34.70 4.18
451 452 0.658897 GGAGACGATGAGGACGAGAC 59.341 60.000 0.00 0.00 34.70 3.36
452 453 0.542333 AGGAGACGATGAGGACGAGA 59.458 55.000 0.00 0.00 34.70 4.04
453 454 0.660488 CAGGAGACGATGAGGACGAG 59.340 60.000 0.00 0.00 34.70 4.18
454 455 0.035343 ACAGGAGACGATGAGGACGA 60.035 55.000 0.00 0.00 34.70 4.20
455 456 0.378962 GACAGGAGACGATGAGGACG 59.621 60.000 0.00 0.00 0.00 4.79
456 457 0.741915 GGACAGGAGACGATGAGGAC 59.258 60.000 0.00 0.00 0.00 3.85
457 458 0.395862 GGGACAGGAGACGATGAGGA 60.396 60.000 0.00 0.00 0.00 3.71
458 459 1.395826 GGGGACAGGAGACGATGAGG 61.396 65.000 0.00 0.00 0.00 3.86
459 460 1.729470 CGGGGACAGGAGACGATGAG 61.729 65.000 0.00 0.00 0.00 2.90
460 461 1.753078 CGGGGACAGGAGACGATGA 60.753 63.158 0.00 0.00 0.00 2.92
461 462 2.786495 CCGGGGACAGGAGACGATG 61.786 68.421 0.00 0.00 0.00 3.84
462 463 2.442272 CCGGGGACAGGAGACGAT 60.442 66.667 0.00 0.00 0.00 3.73
463 464 4.753662 CCCGGGGACAGGAGACGA 62.754 72.222 14.71 0.00 0.00 4.20
464 465 4.753662 TCCCGGGGACAGGAGACG 62.754 72.222 23.50 0.00 0.00 4.18
468 469 0.043637 ATTAACTCCCGGGGACAGGA 59.956 55.000 23.50 2.97 0.00 3.86
469 470 0.916809 AATTAACTCCCGGGGACAGG 59.083 55.000 23.50 5.35 0.00 4.00
470 471 2.017113 GCAATTAACTCCCGGGGACAG 61.017 57.143 23.50 14.00 0.00 3.51
471 472 0.034863 GCAATTAACTCCCGGGGACA 60.035 55.000 23.50 0.00 0.00 4.02
472 473 0.034863 TGCAATTAACTCCCGGGGAC 60.035 55.000 23.50 0.00 0.00 4.46
473 474 0.254747 CTGCAATTAACTCCCGGGGA 59.745 55.000 23.50 16.55 0.00 4.81
474 475 0.751643 CCTGCAATTAACTCCCGGGG 60.752 60.000 23.50 14.41 0.00 5.73
475 476 0.254747 TCCTGCAATTAACTCCCGGG 59.745 55.000 16.85 16.85 0.00 5.73
476 477 2.122783 TTCCTGCAATTAACTCCCGG 57.877 50.000 0.00 0.00 0.00 5.73
610 611 5.050490 GGTTGTCAGATACAGCGTCAATAT 58.950 41.667 0.00 0.00 40.02 1.28
634 635 2.450502 AACTGACTGGTGGGGCCT 60.451 61.111 0.84 0.00 38.35 5.19
676 677 0.901580 GGGTTCGACCAGGTAGACCA 60.902 60.000 16.53 0.00 41.02 4.02
841 877 2.544685 GTCATCGGAGGAGTTCATGTG 58.455 52.381 0.00 0.00 0.00 3.21
969 1012 1.845791 TCTTCAATGCTGGCAGGGATA 59.154 47.619 17.64 0.00 0.00 2.59
1635 1738 6.712095 TCACTCTTGCTGTCTTGATACATTTT 59.288 34.615 0.00 0.00 0.00 1.82
1791 1895 5.597182 ACTGCAAATATCTGAAATCCAGCAT 59.403 36.000 0.00 0.00 42.62 3.79
2044 2152 4.404394 TCTCCACAGACACAGTTAGTTCAA 59.596 41.667 0.00 0.00 0.00 2.69
2055 2163 2.613223 GGGTTAGCTTCTCCACAGACAC 60.613 54.545 0.00 0.00 0.00 3.67
2056 2164 1.623811 GGGTTAGCTTCTCCACAGACA 59.376 52.381 0.00 0.00 0.00 3.41
2492 2602 9.684448 CATACTGGAGTACAACATAGTTCATAG 57.316 37.037 0.00 0.00 32.72 2.23
2708 3111 2.525368 GGAACCCAACATAGCCAAAGT 58.475 47.619 0.00 0.00 0.00 2.66
2717 3120 0.179040 ACGTTGACGGAACCCAACAT 60.179 50.000 8.52 0.00 44.95 2.71
2718 3121 0.810823 GACGTTGACGGAACCCAACA 60.811 55.000 8.52 0.00 44.95 3.33
2719 3122 0.810823 TGACGTTGACGGAACCCAAC 60.811 55.000 8.52 0.00 44.95 3.77
2720 3123 0.107800 TTGACGTTGACGGAACCCAA 60.108 50.000 8.52 1.98 44.95 4.12
2721 3124 0.810823 GTTGACGTTGACGGAACCCA 60.811 55.000 8.52 0.00 44.95 4.51
2722 3125 0.810823 TGTTGACGTTGACGGAACCC 60.811 55.000 8.52 0.00 44.95 4.11
2723 3126 1.008329 TTGTTGACGTTGACGGAACC 58.992 50.000 8.52 0.00 44.95 3.62
2724 3127 1.267682 GGTTGTTGACGTTGACGGAAC 60.268 52.381 8.52 10.28 44.95 3.62
2725 3128 1.008329 GGTTGTTGACGTTGACGGAA 58.992 50.000 8.52 0.00 44.95 4.30
2726 3129 0.810823 GGGTTGTTGACGTTGACGGA 60.811 55.000 8.52 0.00 44.95 4.69
2727 3130 1.644913 GGGTTGTTGACGTTGACGG 59.355 57.895 8.52 0.00 44.95 4.79
2728 3131 0.812412 AGGGGTTGTTGACGTTGACG 60.812 55.000 1.41 1.41 46.33 4.35
2729 3132 2.243602 TAGGGGTTGTTGACGTTGAC 57.756 50.000 0.00 0.00 0.00 3.18
2730 3133 3.118334 TCTTTAGGGGTTGTTGACGTTGA 60.118 43.478 0.00 0.00 0.00 3.18
2731 3134 3.002965 GTCTTTAGGGGTTGTTGACGTTG 59.997 47.826 0.00 0.00 0.00 4.10
2732 3135 3.118149 AGTCTTTAGGGGTTGTTGACGTT 60.118 43.478 0.00 0.00 0.00 3.99
2733 3136 2.436911 AGTCTTTAGGGGTTGTTGACGT 59.563 45.455 0.00 0.00 0.00 4.34
2734 3137 3.121738 AGTCTTTAGGGGTTGTTGACG 57.878 47.619 0.00 0.00 0.00 4.35
2735 3138 6.544931 AGTTTTAGTCTTTAGGGGTTGTTGAC 59.455 38.462 0.00 0.00 0.00 3.18
2736 3139 6.665695 AGTTTTAGTCTTTAGGGGTTGTTGA 58.334 36.000 0.00 0.00 0.00 3.18
2737 3140 6.954487 AGTTTTAGTCTTTAGGGGTTGTTG 57.046 37.500 0.00 0.00 0.00 3.33
2738 3141 7.147794 CCAAAGTTTTAGTCTTTAGGGGTTGTT 60.148 37.037 0.00 0.00 34.35 2.83
2739 3142 6.322969 CCAAAGTTTTAGTCTTTAGGGGTTGT 59.677 38.462 0.00 0.00 34.35 3.32
2740 3143 6.322969 ACCAAAGTTTTAGTCTTTAGGGGTTG 59.677 38.462 0.00 0.00 34.35 3.77
2741 3144 6.437755 ACCAAAGTTTTAGTCTTTAGGGGTT 58.562 36.000 0.00 0.00 34.35 4.11
2742 3145 6.022107 ACCAAAGTTTTAGTCTTTAGGGGT 57.978 37.500 0.00 0.00 34.35 4.95
2743 3146 6.971726 AACCAAAGTTTTAGTCTTTAGGGG 57.028 37.500 0.00 0.00 34.35 4.79
2744 3147 9.074576 ACATAACCAAAGTTTTAGTCTTTAGGG 57.925 33.333 0.00 0.00 37.42 3.53
2748 3151 8.201464 CCCAACATAACCAAAGTTTTAGTCTTT 58.799 33.333 0.00 0.00 37.42 2.52
2749 3152 7.343574 ACCCAACATAACCAAAGTTTTAGTCTT 59.656 33.333 0.00 0.00 37.42 3.01
2750 3153 6.837048 ACCCAACATAACCAAAGTTTTAGTCT 59.163 34.615 0.00 0.00 37.42 3.24
2751 3154 7.046292 ACCCAACATAACCAAAGTTTTAGTC 57.954 36.000 0.00 0.00 37.42 2.59
2752 3155 7.418139 GGAACCCAACATAACCAAAGTTTTAGT 60.418 37.037 0.00 0.00 37.42 2.24
2753 3156 6.926826 GGAACCCAACATAACCAAAGTTTTAG 59.073 38.462 0.00 0.00 37.42 1.85
2754 3157 6.461231 CGGAACCCAACATAACCAAAGTTTTA 60.461 38.462 0.00 0.00 37.42 1.52
2755 3158 5.676552 GGAACCCAACATAACCAAAGTTTT 58.323 37.500 0.00 0.00 37.42 2.43
2756 3159 4.202172 CGGAACCCAACATAACCAAAGTTT 60.202 41.667 0.00 0.00 37.42 2.66
2757 3160 3.319689 CGGAACCCAACATAACCAAAGTT 59.680 43.478 0.00 0.00 40.15 2.66
2758 3161 2.888414 CGGAACCCAACATAACCAAAGT 59.112 45.455 0.00 0.00 0.00 2.66
2759 3162 2.888414 ACGGAACCCAACATAACCAAAG 59.112 45.455 0.00 0.00 0.00 2.77
2760 3163 2.885894 GACGGAACCCAACATAACCAAA 59.114 45.455 0.00 0.00 0.00 3.28
2761 3164 2.506444 GACGGAACCCAACATAACCAA 58.494 47.619 0.00 0.00 0.00 3.67
2762 3165 1.608542 CGACGGAACCCAACATAACCA 60.609 52.381 0.00 0.00 0.00 3.67
2763 3166 1.081094 CGACGGAACCCAACATAACC 58.919 55.000 0.00 0.00 0.00 2.85
2764 3167 1.728425 GTCGACGGAACCCAACATAAC 59.272 52.381 0.00 0.00 0.00 1.89
2765 3168 1.669502 CGTCGACGGAACCCAACATAA 60.670 52.381 29.70 0.00 35.37 1.90
2766 3169 0.109179 CGTCGACGGAACCCAACATA 60.109 55.000 29.70 0.00 35.37 2.29
2840 3243 7.585440 ACCAAAGTTTTAGTCTTTAGGGGTTA 58.415 34.615 0.00 0.00 34.35 2.85
2958 3622 2.525368 GGAACCCAACATAGCCAAAGT 58.475 47.619 0.00 0.00 0.00 2.66
3031 3745 0.039256 TTTAGGGGTTGTCGACGTCG 60.039 55.000 31.30 31.30 41.45 5.12
3032 3746 1.270550 TCTTTAGGGGTTGTCGACGTC 59.729 52.381 11.62 5.18 0.00 4.34
3033 3747 1.000171 GTCTTTAGGGGTTGTCGACGT 60.000 52.381 11.62 0.00 0.00 4.34
3034 3748 1.271656 AGTCTTTAGGGGTTGTCGACG 59.728 52.381 11.62 0.00 0.00 5.12
3035 3749 4.525912 TTAGTCTTTAGGGGTTGTCGAC 57.474 45.455 9.11 9.11 0.00 4.20
3036 3750 4.262592 GGTTTAGTCTTTAGGGGTTGTCGA 60.263 45.833 0.00 0.00 0.00 4.20
3037 3751 3.999001 GGTTTAGTCTTTAGGGGTTGTCG 59.001 47.826 0.00 0.00 0.00 4.35
3038 3752 5.238624 AGGTTTAGTCTTTAGGGGTTGTC 57.761 43.478 0.00 0.00 0.00 3.18
3039 3753 5.658198 AAGGTTTAGTCTTTAGGGGTTGT 57.342 39.130 0.00 0.00 0.00 3.32
3040 3754 5.243060 CCAAAGGTTTAGTCTTTAGGGGTTG 59.757 44.000 0.00 0.00 33.62 3.77
3041 3755 5.391256 CCAAAGGTTTAGTCTTTAGGGGTT 58.609 41.667 0.00 0.00 33.62 4.11
3042 3756 4.751964 GCCAAAGGTTTAGTCTTTAGGGGT 60.752 45.833 0.00 0.00 33.62 4.95
3043 3757 3.762288 GCCAAAGGTTTAGTCTTTAGGGG 59.238 47.826 0.00 0.00 33.62 4.79
3044 3758 4.663334 AGCCAAAGGTTTAGTCTTTAGGG 58.337 43.478 0.00 0.00 33.62 3.53
3045 3759 6.884836 ACATAGCCAAAGGTTTAGTCTTTAGG 59.115 38.462 0.00 0.00 33.62 2.69
3046 3760 7.923414 ACATAGCCAAAGGTTTAGTCTTTAG 57.077 36.000 0.00 0.00 33.62 1.85
3047 3761 7.175990 CCAACATAGCCAAAGGTTTAGTCTTTA 59.824 37.037 0.00 0.00 33.62 1.85
3048 3762 6.015434 CCAACATAGCCAAAGGTTTAGTCTTT 60.015 38.462 0.00 0.00 35.09 2.52
3049 3763 5.476945 CCAACATAGCCAAAGGTTTAGTCTT 59.523 40.000 0.00 0.00 0.00 3.01
3050 3764 5.010282 CCAACATAGCCAAAGGTTTAGTCT 58.990 41.667 0.00 0.00 0.00 3.24
3051 3765 4.157840 CCCAACATAGCCAAAGGTTTAGTC 59.842 45.833 0.00 0.00 0.00 2.59
3052 3766 4.086457 CCCAACATAGCCAAAGGTTTAGT 58.914 43.478 0.00 0.00 0.00 2.24
3053 3767 4.086457 ACCCAACATAGCCAAAGGTTTAG 58.914 43.478 0.00 0.00 0.00 1.85
3054 3768 4.120946 ACCCAACATAGCCAAAGGTTTA 57.879 40.909 0.00 0.00 0.00 2.01
3055 3769 2.970987 ACCCAACATAGCCAAAGGTTT 58.029 42.857 0.00 0.00 0.00 3.27
3056 3770 2.694616 ACCCAACATAGCCAAAGGTT 57.305 45.000 0.00 0.00 0.00 3.50
3057 3771 2.525368 GAACCCAACATAGCCAAAGGT 58.475 47.619 0.00 0.00 0.00 3.50
3058 3772 1.824852 GGAACCCAACATAGCCAAAGG 59.175 52.381 0.00 0.00 0.00 3.11
3059 3773 1.472480 CGGAACCCAACATAGCCAAAG 59.528 52.381 0.00 0.00 0.00 2.77
3060 3774 1.202952 ACGGAACCCAACATAGCCAAA 60.203 47.619 0.00 0.00 0.00 3.28
3061 3775 0.402504 ACGGAACCCAACATAGCCAA 59.597 50.000 0.00 0.00 0.00 4.52
3062 3776 0.035820 GACGGAACCCAACATAGCCA 60.036 55.000 0.00 0.00 0.00 4.75
3063 3777 1.087771 CGACGGAACCCAACATAGCC 61.088 60.000 0.00 0.00 0.00 3.93
3064 3778 0.108520 TCGACGGAACCCAACATAGC 60.109 55.000 0.00 0.00 0.00 2.97
3065 3779 1.636988 GTCGACGGAACCCAACATAG 58.363 55.000 0.00 0.00 0.00 2.23
3066 3780 0.109179 CGTCGACGGAACCCAACATA 60.109 55.000 29.70 0.00 35.37 2.29
3067 3781 1.373748 CGTCGACGGAACCCAACAT 60.374 57.895 29.70 0.00 35.37 2.71
3068 3782 2.027897 CGTCGACGGAACCCAACA 59.972 61.111 29.70 0.00 35.37 3.33
3069 3783 2.018324 GACGTCGACGGAACCCAAC 61.018 63.158 37.89 16.20 44.95 3.77
3070 3784 2.336088 GACGTCGACGGAACCCAA 59.664 61.111 37.89 0.00 44.95 4.12
3071 3785 4.029186 CGACGTCGACGGAACCCA 62.029 66.667 37.89 0.00 44.95 4.51
3072 3786 3.726517 TCGACGTCGACGGAACCC 61.727 66.667 37.89 20.78 44.22 4.11
3108 3822 1.824852 GGAACCCAACATAGCCAAAGG 59.175 52.381 0.00 0.00 0.00 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.