Multiple sequence alignment - TraesCS3D01G079800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G079800 chr3D 100.000 4031 0 0 1 4031 39600772 39596742 0.000000e+00 7444.0
1 TraesCS3D01G079800 chr3B 93.847 2194 99 20 990 3168 63395640 63393468 0.000000e+00 3271.0
2 TraesCS3D01G079800 chr3B 94.286 420 24 0 3612 4031 63392714 63392295 0.000000e+00 643.0
3 TraesCS3D01G079800 chr3B 94.286 385 22 0 3228 3612 63393457 63393073 1.250000e-164 590.0
4 TraesCS3D01G079800 chr3B 85.023 434 53 6 567 992 63396101 63395672 8.000000e-117 431.0
5 TraesCS3D01G079800 chr3A 89.855 690 36 12 1037 1703 51401252 51401930 0.000000e+00 856.0
6 TraesCS3D01G079800 chr3A 79.180 1220 169 59 1995 3163 51402122 51403307 0.000000e+00 767.0
7 TraesCS3D01G079800 chr3A 95.519 424 19 0 3608 4031 51404334 51404757 0.000000e+00 678.0
8 TraesCS3D01G079800 chr3A 92.147 382 30 0 3231 3612 51403619 51404000 1.270000e-149 540.0
9 TraesCS3D01G079800 chr3A 82.514 183 24 7 19 197 613544085 613544263 1.940000e-33 154.0
10 TraesCS3D01G079800 chr3A 83.333 90 15 0 17 106 483448117 483448028 2.580000e-12 84.2
11 TraesCS3D01G079800 chr6D 90.000 420 42 0 3612 4031 68104255 68104674 9.850000e-151 544.0
12 TraesCS3D01G079800 chr6A 90.000 420 42 0 3612 4031 85591804 85592223 9.850000e-151 544.0
13 TraesCS3D01G079800 chr6B 89.762 420 43 0 3612 4031 143205122 143205541 4.580000e-149 538.0
14 TraesCS3D01G079800 chr6B 82.979 94 9 7 18 108 566528288 566528199 1.200000e-10 78.7
15 TraesCS3D01G079800 chr7A 80.931 451 67 12 2627 3073 38632604 38633039 4.990000e-89 339.0
16 TraesCS3D01G079800 chr7A 81.971 416 60 11 2627 3038 38661285 38661689 4.990000e-89 339.0
17 TraesCS3D01G079800 chr7A 80.942 446 66 12 2632 3073 38568744 38569174 6.460000e-88 335.0
18 TraesCS3D01G079800 chr7A 80.710 451 68 12 2627 3073 38699064 38699499 2.320000e-87 333.0
19 TraesCS3D01G079800 chr7A 81.490 416 62 11 2627 3038 38592539 38592943 1.080000e-85 327.0
20 TraesCS3D01G079800 chr7D 85.027 187 23 5 1031 1216 38725803 38725985 6.880000e-43 185.0
21 TraesCS3D01G079800 chr4D 82.482 137 21 3 1 135 75796674 75796539 2.550000e-22 117.0
22 TraesCS3D01G079800 chr4D 84.615 91 14 0 5 95 407785530 407785440 1.540000e-14 91.6
23 TraesCS3D01G079800 chr5D 86.585 82 11 0 18 99 332788429 332788510 1.540000e-14 91.6
24 TraesCS3D01G079800 chr2B 77.193 171 26 6 1991 2159 711219108 711218949 2.000000e-13 87.9
25 TraesCS3D01G079800 chr1D 87.324 71 9 0 5 75 92241085 92241155 9.290000e-12 82.4
26 TraesCS3D01G079800 chr1A 80.734 109 18 1 18 123 237749266 237749158 9.290000e-12 82.4
27 TraesCS3D01G079800 chr7B 84.146 82 13 0 18 99 451487138 451487219 3.340000e-11 80.5
28 TraesCS3D01G079800 chr2D 93.182 44 3 0 564 607 46197013 46197056 9.350000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G079800 chr3D 39596742 39600772 4030 True 7444.00 7444 100.00000 1 4031 1 chr3D.!!$R1 4030
1 TraesCS3D01G079800 chr3B 63392295 63396101 3806 True 1233.75 3271 91.86050 567 4031 4 chr3B.!!$R1 3464
2 TraesCS3D01G079800 chr3A 51401252 51404757 3505 False 710.25 856 89.17525 1037 4031 4 chr3A.!!$F2 2994

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
690 691 0.033781 AAGTTTACGTGGCAGCGGTA 59.966 50.0 0.00 2.39 35.98 4.02 F
807 808 0.108520 AACACGTCTGAACCACACGT 60.109 50.0 0.00 0.00 37.53 4.49 F
829 830 0.314935 CTGACAGTTGCGGGCAATTT 59.685 50.0 9.56 0.00 38.28 1.82 F
951 953 0.467844 CGATGATCCCAATGGCCCAA 60.468 55.0 0.00 0.00 0.00 4.12 F
1039 1081 0.469917 TGCCGATTTCCTCCATCTCC 59.530 55.0 0.00 0.00 0.00 3.71 F
2823 2967 0.968901 ACATCCTCCAGTTCGCCGTA 60.969 55.0 0.00 0.00 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1562 1633 0.607489 CCTTCCCTGGACAAGCACAG 60.607 60.000 0.00 0.00 34.54 3.66 R
1977 2065 0.729116 ACTCCATTTTGCGCATCTCG 59.271 50.000 12.75 0.00 42.12 4.04 R
2041 2130 1.001760 ATCTACCAGTGGGACGCCT 59.998 57.895 15.21 0.00 41.54 5.52 R
2527 2657 1.135944 GCTAAGCTTTGCGGTCAAGTC 60.136 52.381 16.87 0.00 33.12 3.01 R
2988 3132 1.240641 TTTGATGAACGGCCGCACAT 61.241 50.000 28.89 28.89 0.00 3.21 R
3649 4407 1.113517 GCCTACATCGACAGGGGCTA 61.114 60.000 12.21 0.00 36.96 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.125310 TAACCCGGCTGTGCGATG 60.125 61.111 0.00 0.00 0.00 3.84
18 19 3.673956 TAACCCGGCTGTGCGATGG 62.674 63.158 0.00 0.00 0.00 3.51
36 37 4.410400 CGGTGGCCTTCCTGGGAC 62.410 72.222 3.32 0.00 36.00 4.46
37 38 4.048470 GGTGGCCTTCCTGGGACC 62.048 72.222 3.32 0.00 36.00 4.46
38 39 4.048470 GTGGCCTTCCTGGGACCC 62.048 72.222 2.45 2.45 36.00 4.46
39 40 4.608514 TGGCCTTCCTGGGACCCA 62.609 66.667 14.08 14.08 36.00 4.51
40 41 3.264845 GGCCTTCCTGGGACCCAA 61.265 66.667 15.87 0.00 36.00 4.12
41 42 2.356667 GCCTTCCTGGGACCCAAG 59.643 66.667 15.87 9.04 36.00 3.61
42 43 2.356667 CCTTCCTGGGACCCAAGC 59.643 66.667 15.87 0.00 30.80 4.01
43 44 2.045926 CTTCCTGGGACCCAAGCG 60.046 66.667 15.87 2.61 30.80 4.68
44 45 3.628646 CTTCCTGGGACCCAAGCGG 62.629 68.421 15.87 12.88 30.80 5.52
62 63 2.892425 CGGCGGCCTCTCATGTTC 60.892 66.667 18.34 0.00 0.00 3.18
63 64 2.268920 GGCGGCCTCTCATGTTCA 59.731 61.111 12.87 0.00 0.00 3.18
64 65 1.377202 GGCGGCCTCTCATGTTCAA 60.377 57.895 12.87 0.00 0.00 2.69
65 66 1.648467 GGCGGCCTCTCATGTTCAAC 61.648 60.000 12.87 0.00 0.00 3.18
66 67 0.674895 GCGGCCTCTCATGTTCAACT 60.675 55.000 0.00 0.00 0.00 3.16
67 68 1.813513 CGGCCTCTCATGTTCAACTT 58.186 50.000 0.00 0.00 0.00 2.66
68 69 2.154462 CGGCCTCTCATGTTCAACTTT 58.846 47.619 0.00 0.00 0.00 2.66
69 70 2.554032 CGGCCTCTCATGTTCAACTTTT 59.446 45.455 0.00 0.00 0.00 2.27
70 71 3.365364 CGGCCTCTCATGTTCAACTTTTC 60.365 47.826 0.00 0.00 0.00 2.29
71 72 3.057245 GGCCTCTCATGTTCAACTTTTCC 60.057 47.826 0.00 0.00 0.00 3.13
72 73 3.823304 GCCTCTCATGTTCAACTTTTCCT 59.177 43.478 0.00 0.00 0.00 3.36
73 74 4.083057 GCCTCTCATGTTCAACTTTTCCTC 60.083 45.833 0.00 0.00 0.00 3.71
74 75 4.153117 CCTCTCATGTTCAACTTTTCCTCG 59.847 45.833 0.00 0.00 0.00 4.63
75 76 4.703897 TCTCATGTTCAACTTTTCCTCGT 58.296 39.130 0.00 0.00 0.00 4.18
76 77 5.123227 TCTCATGTTCAACTTTTCCTCGTT 58.877 37.500 0.00 0.00 0.00 3.85
77 78 5.007626 TCTCATGTTCAACTTTTCCTCGTTG 59.992 40.000 0.00 0.00 41.30 4.10
78 79 4.638421 TCATGTTCAACTTTTCCTCGTTGT 59.362 37.500 0.00 0.00 40.88 3.32
79 80 4.609691 TGTTCAACTTTTCCTCGTTGTC 57.390 40.909 0.00 0.00 40.88 3.18
80 81 3.375922 TGTTCAACTTTTCCTCGTTGTCC 59.624 43.478 0.00 0.00 40.88 4.02
81 82 2.206750 TCAACTTTTCCTCGTTGTCCG 58.793 47.619 0.00 0.00 40.88 4.79
82 83 1.937899 CAACTTTTCCTCGTTGTCCGT 59.062 47.619 0.00 0.00 36.61 4.69
83 84 1.578583 ACTTTTCCTCGTTGTCCGTG 58.421 50.000 0.00 0.00 37.94 4.94
87 88 2.357034 CCTCGTTGTCCGTGGTGG 60.357 66.667 0.00 0.00 43.53 4.61
88 89 3.041940 CTCGTTGTCCGTGGTGGC 61.042 66.667 0.00 0.00 37.80 5.01
89 90 3.515316 CTCGTTGTCCGTGGTGGCT 62.515 63.158 0.00 0.00 37.80 4.75
90 91 3.345808 CGTTGTCCGTGGTGGCTG 61.346 66.667 0.00 0.00 37.80 4.85
91 92 3.660111 GTTGTCCGTGGTGGCTGC 61.660 66.667 0.00 0.00 37.80 5.25
109 110 4.353437 GGACGTGTCGCCCTTCGT 62.353 66.667 0.00 0.00 39.67 3.85
110 111 3.103911 GACGTGTCGCCCTTCGTG 61.104 66.667 0.00 0.00 39.67 4.35
111 112 3.547249 GACGTGTCGCCCTTCGTGA 62.547 63.158 0.00 0.00 39.67 4.35
112 113 2.355363 CGTGTCGCCCTTCGTGAA 60.355 61.111 0.00 0.00 39.67 3.18
113 114 2.372690 CGTGTCGCCCTTCGTGAAG 61.373 63.158 2.57 2.57 39.67 3.02
114 115 1.006571 GTGTCGCCCTTCGTGAAGA 60.007 57.895 11.11 0.00 40.79 2.87
115 116 0.389948 GTGTCGCCCTTCGTGAAGAT 60.390 55.000 11.11 0.00 40.79 2.40
116 117 0.389817 TGTCGCCCTTCGTGAAGATG 60.390 55.000 11.11 3.43 40.79 2.90
117 118 1.084370 GTCGCCCTTCGTGAAGATGG 61.084 60.000 11.11 5.95 40.79 3.51
118 119 2.464459 CGCCCTTCGTGAAGATGGC 61.464 63.158 15.73 15.73 41.45 4.40
119 120 1.078143 GCCCTTCGTGAAGATGGCT 60.078 57.895 17.47 0.00 40.41 4.75
120 121 0.678048 GCCCTTCGTGAAGATGGCTT 60.678 55.000 17.47 0.00 40.41 4.35
130 131 2.649190 GAAGATGGCTTCTTTCTCCCC 58.351 52.381 15.80 0.25 44.88 4.81
131 132 1.978361 AGATGGCTTCTTTCTCCCCT 58.022 50.000 0.00 0.00 0.00 4.79
132 133 2.282900 AGATGGCTTCTTTCTCCCCTT 58.717 47.619 0.00 0.00 0.00 3.95
133 134 2.025510 AGATGGCTTCTTTCTCCCCTTG 60.026 50.000 0.00 0.00 0.00 3.61
134 135 0.251341 TGGCTTCTTTCTCCCCTTGC 60.251 55.000 0.00 0.00 0.00 4.01
135 136 0.967887 GGCTTCTTTCTCCCCTTGCC 60.968 60.000 0.00 0.00 0.00 4.52
136 137 0.967887 GCTTCTTTCTCCCCTTGCCC 60.968 60.000 0.00 0.00 0.00 5.36
137 138 0.678048 CTTCTTTCTCCCCTTGCCCG 60.678 60.000 0.00 0.00 0.00 6.13
138 139 1.131303 TTCTTTCTCCCCTTGCCCGA 61.131 55.000 0.00 0.00 0.00 5.14
139 140 1.377333 CTTTCTCCCCTTGCCCGAC 60.377 63.158 0.00 0.00 0.00 4.79
140 141 3.248446 TTTCTCCCCTTGCCCGACG 62.248 63.158 0.00 0.00 0.00 5.12
159 160 4.166011 GTTGCCGCCATCGCTCAC 62.166 66.667 0.00 0.00 0.00 3.51
169 170 4.162640 TCGCTCACGACGGATTTG 57.837 55.556 0.00 0.00 45.12 2.32
170 171 2.092291 TCGCTCACGACGGATTTGC 61.092 57.895 0.00 0.00 45.12 3.68
171 172 2.785258 GCTCACGACGGATTTGCC 59.215 61.111 0.00 0.00 0.00 4.52
189 190 3.998672 GGGAGACGACGTTGGCCA 61.999 66.667 4.56 0.00 0.00 5.36
190 191 2.432628 GGAGACGACGTTGGCCAG 60.433 66.667 5.11 0.00 0.00 4.85
191 192 3.112709 GAGACGACGTTGGCCAGC 61.113 66.667 10.00 10.00 0.00 4.85
192 193 4.681978 AGACGACGTTGGCCAGCC 62.682 66.667 14.64 0.38 0.00 4.85
193 194 4.681978 GACGACGTTGGCCAGCCT 62.682 66.667 14.64 1.77 36.94 4.58
194 195 4.988598 ACGACGTTGGCCAGCCTG 62.989 66.667 14.64 6.42 36.94 4.85
196 197 4.329545 GACGTTGGCCAGCCTGGA 62.330 66.667 16.85 0.00 40.96 3.86
197 198 3.628646 GACGTTGGCCAGCCTGGAT 62.629 63.158 16.85 0.00 40.96 3.41
198 199 3.136123 CGTTGGCCAGCCTGGATG 61.136 66.667 16.85 4.63 40.96 3.51
199 200 2.757099 GTTGGCCAGCCTGGATGG 60.757 66.667 26.37 26.37 40.96 3.51
200 201 4.064768 TTGGCCAGCCTGGATGGG 62.065 66.667 30.54 13.77 40.96 4.00
208 209 3.882326 CCTGGATGGGCTGGCGAT 61.882 66.667 0.00 0.00 0.00 4.58
209 210 2.593725 CTGGATGGGCTGGCGATG 60.594 66.667 2.92 0.00 0.00 3.84
210 211 4.193893 TGGATGGGCTGGCGATGG 62.194 66.667 2.92 0.00 0.00 3.51
233 234 3.386237 GCACCGGCTCCAGAGAGT 61.386 66.667 0.00 0.00 42.59 3.24
234 235 2.948720 GCACCGGCTCCAGAGAGTT 61.949 63.158 0.00 0.00 42.59 3.01
235 236 1.674057 CACCGGCTCCAGAGAGTTT 59.326 57.895 0.00 0.00 42.59 2.66
236 237 0.671781 CACCGGCTCCAGAGAGTTTG 60.672 60.000 0.00 0.00 42.59 2.93
237 238 1.743252 CCGGCTCCAGAGAGTTTGC 60.743 63.158 0.00 0.00 42.59 3.68
238 239 1.294780 CGGCTCCAGAGAGTTTGCT 59.705 57.895 0.00 0.00 42.59 3.91
239 240 1.018226 CGGCTCCAGAGAGTTTGCTG 61.018 60.000 0.00 0.00 42.59 4.41
242 243 4.806936 CCAGAGAGTTTGCTGGCA 57.193 55.556 0.00 0.00 44.53 4.92
243 244 3.025924 CCAGAGAGTTTGCTGGCAA 57.974 52.632 3.72 3.72 44.53 4.52
244 245 0.879765 CCAGAGAGTTTGCTGGCAAG 59.120 55.000 8.04 0.00 44.53 4.01
253 254 2.914097 GCTGGCAAGCCAACCTGT 60.914 61.111 15.55 0.00 46.63 4.00
254 255 1.603455 GCTGGCAAGCCAACCTGTA 60.603 57.895 15.55 0.00 46.63 2.74
255 256 0.967380 GCTGGCAAGCCAACCTGTAT 60.967 55.000 15.55 0.00 46.63 2.29
256 257 1.549203 CTGGCAAGCCAACCTGTATT 58.451 50.000 15.55 0.00 46.63 1.89
257 258 1.474077 CTGGCAAGCCAACCTGTATTC 59.526 52.381 15.55 0.00 46.63 1.75
258 259 0.451783 GGCAAGCCAACCTGTATTCG 59.548 55.000 6.14 0.00 35.81 3.34
259 260 0.451783 GCAAGCCAACCTGTATTCGG 59.548 55.000 0.00 0.00 0.00 4.30
260 261 0.451783 CAAGCCAACCTGTATTCGGC 59.548 55.000 0.00 0.00 43.31 5.54
261 262 4.637771 GCCAACCTGTATTCGGCT 57.362 55.556 0.00 0.00 39.73 5.52
262 263 3.772619 GCCAACCTGTATTCGGCTA 57.227 52.632 0.00 0.00 39.73 3.93
263 264 1.583054 GCCAACCTGTATTCGGCTAG 58.417 55.000 0.00 0.00 39.73 3.42
264 265 1.583054 CCAACCTGTATTCGGCTAGC 58.417 55.000 6.04 6.04 0.00 3.42
265 266 1.139058 CCAACCTGTATTCGGCTAGCT 59.861 52.381 15.72 0.00 0.00 3.32
266 267 2.474816 CAACCTGTATTCGGCTAGCTC 58.525 52.381 15.72 3.82 0.00 4.09
267 268 0.669077 ACCTGTATTCGGCTAGCTCG 59.331 55.000 15.72 16.19 0.00 5.03
268 269 0.664767 CCTGTATTCGGCTAGCTCGC 60.665 60.000 15.72 0.62 0.00 5.03
269 270 0.999228 CTGTATTCGGCTAGCTCGCG 60.999 60.000 15.72 10.15 0.00 5.87
270 271 1.729838 GTATTCGGCTAGCTCGCGG 60.730 63.158 15.72 11.06 0.00 6.46
271 272 2.916052 TATTCGGCTAGCTCGCGGG 61.916 63.158 15.72 2.60 0.00 6.13
288 289 2.985847 GGCAACCCAGACCACTGC 60.986 66.667 0.00 0.00 42.25 4.40
289 290 2.203337 GCAACCCAGACCACTGCA 60.203 61.111 0.00 0.00 42.25 4.41
290 291 1.827789 GCAACCCAGACCACTGCAA 60.828 57.895 0.00 0.00 42.25 4.08
291 292 1.181098 GCAACCCAGACCACTGCAAT 61.181 55.000 0.00 0.00 42.25 3.56
292 293 0.599558 CAACCCAGACCACTGCAATG 59.400 55.000 0.00 0.00 42.25 2.82
293 294 0.185901 AACCCAGACCACTGCAATGT 59.814 50.000 0.00 0.00 42.25 2.71
294 295 0.185901 ACCCAGACCACTGCAATGTT 59.814 50.000 0.00 0.00 42.25 2.71
295 296 0.599558 CCCAGACCACTGCAATGTTG 59.400 55.000 0.00 0.00 42.25 3.33
296 297 0.599558 CCAGACCACTGCAATGTTGG 59.400 55.000 0.00 0.00 42.25 3.77
297 298 1.608055 CAGACCACTGCAATGTTGGA 58.392 50.000 9.65 0.00 37.33 3.53
313 314 3.758715 GGAGAGCTCCTTCTTCTGC 57.241 57.895 10.93 0.00 46.16 4.26
314 315 0.177836 GGAGAGCTCCTTCTTCTGCC 59.822 60.000 10.93 0.00 46.16 4.85
315 316 0.179113 GAGAGCTCCTTCTTCTGCCG 60.179 60.000 10.93 0.00 0.00 5.69
316 317 1.813337 GAGCTCCTTCTTCTGCCGC 60.813 63.158 0.87 0.00 0.00 6.53
317 318 2.821810 GCTCCTTCTTCTGCCGCC 60.822 66.667 0.00 0.00 0.00 6.13
318 319 2.510238 CTCCTTCTTCTGCCGCCG 60.510 66.667 0.00 0.00 0.00 6.46
319 320 2.994995 TCCTTCTTCTGCCGCCGA 60.995 61.111 0.00 0.00 0.00 5.54
320 321 2.047274 CCTTCTTCTGCCGCCGAA 60.047 61.111 0.00 0.00 0.00 4.30
321 322 2.103042 CCTTCTTCTGCCGCCGAAG 61.103 63.158 16.17 16.17 39.32 3.79
322 323 1.079819 CTTCTTCTGCCGCCGAAGA 60.080 57.895 19.78 19.78 43.61 2.87
323 324 1.079819 TTCTTCTGCCGCCGAAGAG 60.080 57.895 21.74 2.91 45.26 2.85
324 325 2.507110 TTCTTCTGCCGCCGAAGAGG 62.507 60.000 21.74 4.98 45.26 3.69
333 334 4.225497 CCGAAGAGGCCATTCCAC 57.775 61.111 5.01 0.00 37.29 4.02
334 335 1.299648 CCGAAGAGGCCATTCCACA 59.700 57.895 5.01 0.00 37.29 4.17
335 336 0.322456 CCGAAGAGGCCATTCCACAA 60.322 55.000 5.01 0.00 37.29 3.33
336 337 1.089920 CGAAGAGGCCATTCCACAAG 58.910 55.000 5.01 0.00 37.29 3.16
337 338 1.339055 CGAAGAGGCCATTCCACAAGA 60.339 52.381 5.01 0.00 37.29 3.02
338 339 2.087646 GAAGAGGCCATTCCACAAGAC 58.912 52.381 5.01 0.00 37.29 3.01
339 340 1.366319 AGAGGCCATTCCACAAGACT 58.634 50.000 5.01 0.00 37.29 3.24
340 341 1.707427 AGAGGCCATTCCACAAGACTT 59.293 47.619 5.01 0.00 37.29 3.01
341 342 2.108952 AGAGGCCATTCCACAAGACTTT 59.891 45.455 5.01 0.00 37.29 2.66
342 343 2.229784 GAGGCCATTCCACAAGACTTTG 59.770 50.000 5.01 0.00 40.24 2.77
343 344 1.273327 GGCCATTCCACAAGACTTTGG 59.727 52.381 0.00 9.07 38.66 3.28
344 345 2.238521 GCCATTCCACAAGACTTTGGA 58.761 47.619 12.40 12.40 40.30 3.53
345 346 2.229784 GCCATTCCACAAGACTTTGGAG 59.770 50.000 14.65 8.40 42.93 3.86
346 347 2.229784 CCATTCCACAAGACTTTGGAGC 59.770 50.000 14.65 0.00 42.93 4.70
347 348 1.981256 TTCCACAAGACTTTGGAGCC 58.019 50.000 14.65 0.00 42.93 4.70
348 349 0.250295 TCCACAAGACTTTGGAGCCG 60.250 55.000 12.40 0.00 36.96 5.52
349 350 1.237285 CCACAAGACTTTGGAGCCGG 61.237 60.000 0.00 0.00 38.66 6.13
350 351 0.250295 CACAAGACTTTGGAGCCGGA 60.250 55.000 5.05 0.00 38.66 5.14
351 352 0.472471 ACAAGACTTTGGAGCCGGAA 59.528 50.000 5.05 0.00 38.66 4.30
352 353 1.160137 CAAGACTTTGGAGCCGGAAG 58.840 55.000 5.05 0.98 0.00 3.46
353 354 0.606673 AAGACTTTGGAGCCGGAAGC 60.607 55.000 5.05 0.00 44.25 3.86
354 355 2.034221 ACTTTGGAGCCGGAAGCC 59.966 61.111 5.05 2.56 45.47 4.35
355 356 2.034066 CTTTGGAGCCGGAAGCCA 59.966 61.111 5.05 5.84 45.47 4.75
356 357 1.379044 CTTTGGAGCCGGAAGCCAT 60.379 57.895 5.05 0.00 45.47 4.40
357 358 0.107214 CTTTGGAGCCGGAAGCCATA 60.107 55.000 5.05 3.02 45.47 2.74
358 359 0.329931 TTTGGAGCCGGAAGCCATAA 59.670 50.000 5.05 3.72 45.47 1.90
359 360 0.107214 TTGGAGCCGGAAGCCATAAG 60.107 55.000 5.05 0.00 45.47 1.73
360 361 0.980754 TGGAGCCGGAAGCCATAAGA 60.981 55.000 5.05 0.00 45.47 2.10
361 362 0.180406 GGAGCCGGAAGCCATAAGAA 59.820 55.000 5.05 0.00 45.47 2.52
362 363 1.202818 GGAGCCGGAAGCCATAAGAAT 60.203 52.381 5.05 0.00 45.47 2.40
363 364 1.876156 GAGCCGGAAGCCATAAGAATG 59.124 52.381 5.05 0.00 45.47 2.67
364 365 1.212935 AGCCGGAAGCCATAAGAATGT 59.787 47.619 5.05 0.00 45.47 2.71
365 366 1.334869 GCCGGAAGCCATAAGAATGTG 59.665 52.381 5.05 0.00 34.35 3.21
366 367 1.949525 CCGGAAGCCATAAGAATGTGG 59.050 52.381 0.00 0.00 40.60 4.17
367 368 1.949525 CGGAAGCCATAAGAATGTGGG 59.050 52.381 0.00 0.00 38.22 4.61
369 370 3.433031 CGGAAGCCATAAGAATGTGGGTA 60.433 47.826 0.00 0.00 46.39 3.69
370 371 3.883489 GGAAGCCATAAGAATGTGGGTAC 59.117 47.826 0.00 0.00 46.39 3.34
371 372 4.523083 GAAGCCATAAGAATGTGGGTACA 58.477 43.478 0.00 0.00 46.39 2.90
372 373 4.156455 AGCCATAAGAATGTGGGTACAG 57.844 45.455 0.00 0.00 45.42 2.74
373 374 3.780294 AGCCATAAGAATGTGGGTACAGA 59.220 43.478 0.00 0.00 45.42 3.41
374 375 4.130118 GCCATAAGAATGTGGGTACAGAG 58.870 47.826 0.00 0.00 40.79 3.35
375 376 4.141711 GCCATAAGAATGTGGGTACAGAGA 60.142 45.833 0.00 0.00 40.79 3.10
376 377 5.605534 CCATAAGAATGTGGGTACAGAGAG 58.394 45.833 0.00 0.00 40.79 3.20
377 378 5.453903 CCATAAGAATGTGGGTACAGAGAGG 60.454 48.000 0.00 0.00 40.79 3.69
378 379 3.474798 AGAATGTGGGTACAGAGAGGA 57.525 47.619 0.00 0.00 40.79 3.71
379 380 3.370104 AGAATGTGGGTACAGAGAGGAG 58.630 50.000 0.00 0.00 40.79 3.69
380 381 3.011821 AGAATGTGGGTACAGAGAGGAGA 59.988 47.826 0.00 0.00 40.79 3.71
381 382 3.697190 ATGTGGGTACAGAGAGGAGAT 57.303 47.619 0.00 0.00 40.79 2.75
382 383 2.739943 TGTGGGTACAGAGAGGAGATG 58.260 52.381 0.00 0.00 31.91 2.90
383 384 2.035632 GTGGGTACAGAGAGGAGATGG 58.964 57.143 0.00 0.00 0.00 3.51
384 385 1.930204 TGGGTACAGAGAGGAGATGGA 59.070 52.381 0.00 0.00 0.00 3.41
385 386 2.091610 TGGGTACAGAGAGGAGATGGAG 60.092 54.545 0.00 0.00 0.00 3.86
386 387 2.175931 GGGTACAGAGAGGAGATGGAGA 59.824 54.545 0.00 0.00 0.00 3.71
387 388 3.486383 GGTACAGAGAGGAGATGGAGAG 58.514 54.545 0.00 0.00 0.00 3.20
388 389 2.754012 ACAGAGAGGAGATGGAGAGG 57.246 55.000 0.00 0.00 0.00 3.69
389 390 2.213310 ACAGAGAGGAGATGGAGAGGA 58.787 52.381 0.00 0.00 0.00 3.71
390 391 2.175499 ACAGAGAGGAGATGGAGAGGAG 59.825 54.545 0.00 0.00 0.00 3.69
391 392 1.782752 AGAGAGGAGATGGAGAGGAGG 59.217 57.143 0.00 0.00 0.00 4.30
392 393 0.859760 AGAGGAGATGGAGAGGAGGG 59.140 60.000 0.00 0.00 0.00 4.30
393 394 0.178935 GAGGAGATGGAGAGGAGGGG 60.179 65.000 0.00 0.00 0.00 4.79
394 395 1.152139 GGAGATGGAGAGGAGGGGG 60.152 68.421 0.00 0.00 0.00 5.40
395 396 1.669927 GGAGATGGAGAGGAGGGGGA 61.670 65.000 0.00 0.00 0.00 4.81
396 397 0.178935 GAGATGGAGAGGAGGGGGAG 60.179 65.000 0.00 0.00 0.00 4.30
397 398 0.631998 AGATGGAGAGGAGGGGGAGA 60.632 60.000 0.00 0.00 0.00 3.71
398 399 0.491371 GATGGAGAGGAGGGGGAGAT 59.509 60.000 0.00 0.00 0.00 2.75
399 400 0.193069 ATGGAGAGGAGGGGGAGATG 59.807 60.000 0.00 0.00 0.00 2.90
400 401 1.152139 GGAGAGGAGGGGGAGATGG 60.152 68.421 0.00 0.00 0.00 3.51
401 402 1.669927 GGAGAGGAGGGGGAGATGGA 61.670 65.000 0.00 0.00 0.00 3.41
402 403 0.178935 GAGAGGAGGGGGAGATGGAG 60.179 65.000 0.00 0.00 0.00 3.86
403 404 0.631998 AGAGGAGGGGGAGATGGAGA 60.632 60.000 0.00 0.00 0.00 3.71
404 405 0.178935 GAGGAGGGGGAGATGGAGAG 60.179 65.000 0.00 0.00 0.00 3.20
405 406 1.152139 GGAGGGGGAGATGGAGAGG 60.152 68.421 0.00 0.00 0.00 3.69
406 407 1.669927 GGAGGGGGAGATGGAGAGGA 61.670 65.000 0.00 0.00 0.00 3.71
407 408 0.178935 GAGGGGGAGATGGAGAGGAG 60.179 65.000 0.00 0.00 0.00 3.69
408 409 1.152139 GGGGGAGATGGAGAGGAGG 60.152 68.421 0.00 0.00 0.00 4.30
409 410 1.152139 GGGGAGATGGAGAGGAGGG 60.152 68.421 0.00 0.00 0.00 4.30
410 411 1.152139 GGGAGATGGAGAGGAGGGG 60.152 68.421 0.00 0.00 0.00 4.79
411 412 1.152139 GGAGATGGAGAGGAGGGGG 60.152 68.421 0.00 0.00 0.00 5.40
412 413 1.629297 GAGATGGAGAGGAGGGGGT 59.371 63.158 0.00 0.00 0.00 4.95
413 414 0.762461 GAGATGGAGAGGAGGGGGTG 60.762 65.000 0.00 0.00 0.00 4.61
414 415 1.003573 GATGGAGAGGAGGGGGTGT 59.996 63.158 0.00 0.00 0.00 4.16
415 416 1.307343 ATGGAGAGGAGGGGGTGTG 60.307 63.158 0.00 0.00 0.00 3.82
416 417 2.689034 GGAGAGGAGGGGGTGTGG 60.689 72.222 0.00 0.00 0.00 4.17
417 418 2.122954 GAGAGGAGGGGGTGTGGT 59.877 66.667 0.00 0.00 0.00 4.16
418 419 2.203998 AGAGGAGGGGGTGTGGTG 60.204 66.667 0.00 0.00 0.00 4.17
419 420 2.529389 GAGGAGGGGGTGTGGTGT 60.529 66.667 0.00 0.00 0.00 4.16
420 421 2.854032 AGGAGGGGGTGTGGTGTG 60.854 66.667 0.00 0.00 0.00 3.82
421 422 2.852075 GGAGGGGGTGTGGTGTGA 60.852 66.667 0.00 0.00 0.00 3.58
422 423 2.231380 GGAGGGGGTGTGGTGTGAT 61.231 63.158 0.00 0.00 0.00 3.06
423 424 1.767692 GAGGGGGTGTGGTGTGATT 59.232 57.895 0.00 0.00 0.00 2.57
424 425 0.322546 GAGGGGGTGTGGTGTGATTC 60.323 60.000 0.00 0.00 0.00 2.52
425 426 0.772124 AGGGGGTGTGGTGTGATTCT 60.772 55.000 0.00 0.00 0.00 2.40
426 427 0.112412 GGGGGTGTGGTGTGATTCTT 59.888 55.000 0.00 0.00 0.00 2.52
427 428 1.247567 GGGGTGTGGTGTGATTCTTG 58.752 55.000 0.00 0.00 0.00 3.02
428 429 0.598065 GGGTGTGGTGTGATTCTTGC 59.402 55.000 0.00 0.00 0.00 4.01
429 430 0.598065 GGTGTGGTGTGATTCTTGCC 59.402 55.000 0.00 0.00 0.00 4.52
430 431 1.609208 GTGTGGTGTGATTCTTGCCT 58.391 50.000 0.00 0.00 0.00 4.75
431 432 1.267806 GTGTGGTGTGATTCTTGCCTG 59.732 52.381 0.00 0.00 0.00 4.85
432 433 1.142667 TGTGGTGTGATTCTTGCCTGA 59.857 47.619 0.00 0.00 0.00 3.86
433 434 2.224843 TGTGGTGTGATTCTTGCCTGAT 60.225 45.455 0.00 0.00 0.00 2.90
434 435 2.163010 GTGGTGTGATTCTTGCCTGATG 59.837 50.000 0.00 0.00 0.00 3.07
435 436 1.133790 GGTGTGATTCTTGCCTGATGC 59.866 52.381 0.00 0.00 41.77 3.91
436 437 1.133790 GTGTGATTCTTGCCTGATGCC 59.866 52.381 0.00 0.00 40.16 4.40
437 438 1.005097 TGTGATTCTTGCCTGATGCCT 59.995 47.619 0.00 0.00 40.16 4.75
438 439 1.404391 GTGATTCTTGCCTGATGCCTG 59.596 52.381 0.00 0.00 40.16 4.85
439 440 1.030457 GATTCTTGCCTGATGCCTGG 58.970 55.000 0.00 0.00 40.16 4.45
445 446 4.415150 CCTGATGCCTGGCCACGT 62.415 66.667 17.53 0.00 0.00 4.49
446 447 2.360350 CTGATGCCTGGCCACGTT 60.360 61.111 17.53 0.00 0.00 3.99
447 448 1.973281 CTGATGCCTGGCCACGTTT 60.973 57.895 17.53 0.00 0.00 3.60
448 449 0.676466 CTGATGCCTGGCCACGTTTA 60.676 55.000 17.53 0.00 0.00 2.01
449 450 0.250945 TGATGCCTGGCCACGTTTAA 60.251 50.000 17.53 0.00 0.00 1.52
450 451 0.885196 GATGCCTGGCCACGTTTAAA 59.115 50.000 17.53 0.00 0.00 1.52
451 452 1.476488 GATGCCTGGCCACGTTTAAAT 59.524 47.619 17.53 0.00 0.00 1.40
452 453 2.201921 TGCCTGGCCACGTTTAAATA 57.798 45.000 17.53 0.00 0.00 1.40
453 454 2.088423 TGCCTGGCCACGTTTAAATAG 58.912 47.619 17.53 0.00 0.00 1.73
454 455 1.404035 GCCTGGCCACGTTTAAATAGG 59.596 52.381 7.66 0.00 0.00 2.57
455 456 2.021457 CCTGGCCACGTTTAAATAGGG 58.979 52.381 0.00 0.00 0.00 3.53
456 457 2.021457 CTGGCCACGTTTAAATAGGGG 58.979 52.381 0.00 9.74 0.00 4.79
457 458 1.341187 TGGCCACGTTTAAATAGGGGG 60.341 52.381 0.00 8.40 0.00 5.40
458 459 0.742505 GCCACGTTTAAATAGGGGGC 59.257 55.000 12.49 12.49 44.29 5.80
459 460 1.018910 CCACGTTTAAATAGGGGGCG 58.981 55.000 6.95 0.00 0.00 6.13
460 461 1.018910 CACGTTTAAATAGGGGGCGG 58.981 55.000 0.00 0.00 0.00 6.13
461 462 0.911053 ACGTTTAAATAGGGGGCGGA 59.089 50.000 0.00 0.00 0.00 5.54
462 463 1.491754 ACGTTTAAATAGGGGGCGGAT 59.508 47.619 0.00 0.00 0.00 4.18
463 464 1.877443 CGTTTAAATAGGGGGCGGATG 59.123 52.381 0.00 0.00 0.00 3.51
464 465 1.611977 GTTTAAATAGGGGGCGGATGC 59.388 52.381 0.00 0.00 41.71 3.91
465 466 0.847373 TTAAATAGGGGGCGGATGCA 59.153 50.000 0.00 0.00 45.35 3.96
466 467 0.847373 TAAATAGGGGGCGGATGCAA 59.153 50.000 0.00 0.00 45.35 4.08
467 468 0.468029 AAATAGGGGGCGGATGCAAG 60.468 55.000 0.00 0.00 45.35 4.01
468 469 1.645402 AATAGGGGGCGGATGCAAGT 61.645 55.000 0.00 0.00 45.35 3.16
469 470 2.056906 ATAGGGGGCGGATGCAAGTC 62.057 60.000 0.00 0.00 45.35 3.01
474 475 3.430862 GCGGATGCAAGTCGCCAA 61.431 61.111 17.10 0.00 43.17 4.52
475 476 2.480555 CGGATGCAAGTCGCCAAC 59.519 61.111 0.00 0.00 41.33 3.77
476 477 2.877691 GGATGCAAGTCGCCAACC 59.122 61.111 0.00 0.00 41.33 3.77
477 478 2.480555 GATGCAAGTCGCCAACCG 59.519 61.111 0.00 0.00 41.33 4.44
478 479 3.039202 GATGCAAGTCGCCAACCGG 62.039 63.158 0.00 0.00 41.33 5.28
479 480 3.545124 ATGCAAGTCGCCAACCGGA 62.545 57.895 9.46 0.00 41.33 5.14
480 481 3.423154 GCAAGTCGCCAACCGGAG 61.423 66.667 9.46 0.00 37.59 4.63
481 482 2.342279 CAAGTCGCCAACCGGAGA 59.658 61.111 9.46 0.00 39.02 3.71
482 483 1.738099 CAAGTCGCCAACCGGAGAG 60.738 63.158 9.46 0.00 42.37 3.20
483 484 2.943978 AAGTCGCCAACCGGAGAGG 61.944 63.158 9.46 7.96 42.37 3.69
492 493 3.466881 CCGGAGAGGTGTTCCACA 58.533 61.111 0.00 0.00 35.86 4.17
501 502 2.203280 TGTTCCACACAAGGGCGG 60.203 61.111 0.00 0.00 29.87 6.13
502 503 2.112297 GTTCCACACAAGGGCGGA 59.888 61.111 0.00 0.00 0.00 5.54
503 504 2.112297 TTCCACACAAGGGCGGAC 59.888 61.111 0.00 0.00 0.00 4.79
504 505 3.818121 TTCCACACAAGGGCGGACG 62.818 63.158 0.00 0.00 0.00 4.79
505 506 4.619227 CCACACAAGGGCGGACGT 62.619 66.667 0.00 0.00 0.00 4.34
506 507 3.345808 CACACAAGGGCGGACGTG 61.346 66.667 0.00 0.00 35.48 4.49
507 508 3.857038 ACACAAGGGCGGACGTGT 61.857 61.111 0.00 0.00 37.76 4.49
508 509 3.345808 CACAAGGGCGGACGTGTG 61.346 66.667 0.00 2.35 42.58 3.82
509 510 4.619227 ACAAGGGCGGACGTGTGG 62.619 66.667 0.00 0.00 31.92 4.17
527 528 4.169696 CGCTGGGGTGCCGGAATA 62.170 66.667 5.05 0.00 0.00 1.75
528 529 2.203209 GCTGGGGTGCCGGAATAG 60.203 66.667 5.05 0.00 0.00 1.73
529 530 2.510906 CTGGGGTGCCGGAATAGG 59.489 66.667 5.05 0.00 0.00 2.57
530 531 2.285818 TGGGGTGCCGGAATAGGT 60.286 61.111 5.05 0.00 0.00 3.08
531 532 1.921869 CTGGGGTGCCGGAATAGGTT 61.922 60.000 5.05 0.00 0.00 3.50
532 533 1.305287 GGGGTGCCGGAATAGGTTT 59.695 57.895 5.05 0.00 0.00 3.27
533 534 0.547553 GGGGTGCCGGAATAGGTTTA 59.452 55.000 5.05 0.00 0.00 2.01
534 535 1.144298 GGGGTGCCGGAATAGGTTTAT 59.856 52.381 5.05 0.00 0.00 1.40
535 536 2.372837 GGGGTGCCGGAATAGGTTTATA 59.627 50.000 5.05 0.00 0.00 0.98
536 537 3.558533 GGGGTGCCGGAATAGGTTTATAG 60.559 52.174 5.05 0.00 0.00 1.31
537 538 3.558533 GGGTGCCGGAATAGGTTTATAGG 60.559 52.174 5.05 0.00 0.00 2.57
538 539 3.072211 GTGCCGGAATAGGTTTATAGGC 58.928 50.000 5.05 0.00 43.26 3.93
539 540 3.412237 GCCGGAATAGGTTTATAGGCA 57.588 47.619 5.05 0.00 42.57 4.75
540 541 3.072211 GCCGGAATAGGTTTATAGGCAC 58.928 50.000 5.05 0.00 42.57 5.01
541 542 3.495453 GCCGGAATAGGTTTATAGGCACA 60.495 47.826 5.05 0.00 42.57 4.57
542 543 4.315803 CCGGAATAGGTTTATAGGCACAG 58.684 47.826 0.00 0.00 0.00 3.66
543 544 4.315803 CGGAATAGGTTTATAGGCACAGG 58.684 47.826 0.00 0.00 0.00 4.00
544 545 4.072839 GGAATAGGTTTATAGGCACAGGC 58.927 47.826 0.00 0.00 40.13 4.85
545 546 2.902705 TAGGTTTATAGGCACAGGCG 57.097 50.000 0.00 0.00 42.47 5.52
546 547 0.463833 AGGTTTATAGGCACAGGCGC 60.464 55.000 0.00 0.00 42.47 6.53
555 556 2.437716 CACAGGCGCCGGGTTAAT 60.438 61.111 30.14 6.14 0.00 1.40
556 557 2.437716 ACAGGCGCCGGGTTAATG 60.438 61.111 30.14 18.97 0.00 1.90
557 558 3.887868 CAGGCGCCGGGTTAATGC 61.888 66.667 23.20 0.00 0.00 3.56
571 572 3.069729 GGTTAATGCCGGATCTAGTGAGT 59.930 47.826 5.05 0.00 0.00 3.41
573 574 1.043816 ATGCCGGATCTAGTGAGTGG 58.956 55.000 5.05 0.00 0.00 4.00
608 609 1.819208 CCGAGATGAATGCGGGCAA 60.819 57.895 0.00 0.00 41.29 4.52
618 619 4.362476 GCGGGCAACTGGCTTTGG 62.362 66.667 3.06 0.00 45.89 3.28
631 632 3.267597 CTTTGGGTGGGAAAGCGCG 62.268 63.158 0.00 0.00 0.00 6.86
668 669 0.111639 TTTGGGTGGCTAGGGTTGTC 59.888 55.000 0.00 0.00 0.00 3.18
677 678 3.071312 TGGCTAGGGTTGTCGAAAGTTTA 59.929 43.478 0.00 0.00 0.00 2.01
678 679 3.434641 GGCTAGGGTTGTCGAAAGTTTAC 59.565 47.826 0.00 0.00 0.00 2.01
685 686 1.862201 TGTCGAAAGTTTACGTGGCAG 59.138 47.619 0.00 0.00 0.00 4.85
690 691 0.033781 AAGTTTACGTGGCAGCGGTA 59.966 50.000 0.00 2.39 35.98 4.02
692 693 0.945265 GTTTACGTGGCAGCGGTACA 60.945 55.000 0.00 0.00 35.98 2.90
705 706 1.674611 CGGTACAGACGCTCGCAAAG 61.675 60.000 0.00 0.00 0.00 2.77
713 714 2.796651 GCTCGCAAAGCCCATCAG 59.203 61.111 0.00 0.00 45.92 2.90
720 721 2.407090 GCAAAGCCCATCAGTTTGTTC 58.593 47.619 0.00 0.00 34.32 3.18
727 728 3.799917 GCCCATCAGTTTGTTCCAGTTTG 60.800 47.826 0.00 0.00 0.00 2.93
752 753 2.880963 AAAACACACATCCAAACCGG 57.119 45.000 0.00 0.00 0.00 5.28
753 754 0.387565 AAACACACATCCAAACCGGC 59.612 50.000 0.00 0.00 33.14 6.13
756 757 3.439540 CACATCCAAACCGGCCGG 61.440 66.667 42.17 42.17 42.03 6.13
775 776 3.644884 GGTCGACCGATACAAGATCAT 57.355 47.619 20.85 0.00 0.00 2.45
784 785 5.163311 ACCGATACAAGATCATGTTGGATGA 60.163 40.000 17.97 0.00 34.75 2.92
787 788 7.277319 CCGATACAAGATCATGTTGGATGATAG 59.723 40.741 9.14 0.00 38.73 2.08
796 797 4.801330 TGTTGGATGATAGAACACGTCT 57.199 40.909 0.00 0.00 40.71 4.18
802 803 4.381612 GGATGATAGAACACGTCTGAACCA 60.382 45.833 0.00 0.00 37.12 3.67
803 804 3.909430 TGATAGAACACGTCTGAACCAC 58.091 45.455 0.00 0.00 37.12 4.16
804 805 3.319689 TGATAGAACACGTCTGAACCACA 59.680 43.478 0.00 0.00 37.12 4.17
807 808 0.108520 AACACGTCTGAACCACACGT 60.109 50.000 0.00 0.00 37.53 4.49
809 810 1.003851 CACGTCTGAACCACACGTTT 58.996 50.000 0.00 0.00 33.74 3.60
811 812 1.134907 ACGTCTGAACCACACGTTTCT 60.135 47.619 0.00 0.00 33.74 2.52
816 817 2.276201 TGAACCACACGTTTCTGACAG 58.724 47.619 0.00 0.00 33.74 3.51
825 826 1.153066 TTTCTGACAGTTGCGGGCA 60.153 52.632 1.59 0.00 0.00 5.36
829 830 0.314935 CTGACAGTTGCGGGCAATTT 59.685 50.000 9.56 0.00 38.28 1.82
832 833 2.362397 TGACAGTTGCGGGCAATTTAAA 59.638 40.909 9.56 0.00 38.28 1.52
842 843 1.068125 GGCAATTTAAAGGTCGGCGTT 60.068 47.619 6.85 0.00 0.00 4.84
843 844 1.982913 GCAATTTAAAGGTCGGCGTTG 59.017 47.619 6.85 1.43 0.00 4.10
855 856 2.395690 GCGTTGAAGATGCGGACG 59.604 61.111 0.00 0.00 36.85 4.79
864 865 0.755698 AGATGCGGACGGTAGATGGT 60.756 55.000 0.00 0.00 0.00 3.55
946 948 1.202855 AGAAGGCGATGATCCCAATGG 60.203 52.381 0.00 0.00 0.00 3.16
951 953 0.467844 CGATGATCCCAATGGCCCAA 60.468 55.000 0.00 0.00 0.00 4.12
1035 1077 2.103263 GACTAGTGCCGATTTCCTCCAT 59.897 50.000 0.00 0.00 0.00 3.41
1036 1078 2.103263 ACTAGTGCCGATTTCCTCCATC 59.897 50.000 0.00 0.00 0.00 3.51
1037 1079 1.207791 AGTGCCGATTTCCTCCATCT 58.792 50.000 0.00 0.00 0.00 2.90
1038 1080 1.139853 AGTGCCGATTTCCTCCATCTC 59.860 52.381 0.00 0.00 0.00 2.75
1039 1081 0.469917 TGCCGATTTCCTCCATCTCC 59.530 55.000 0.00 0.00 0.00 3.71
1040 1082 0.469917 GCCGATTTCCTCCATCTCCA 59.530 55.000 0.00 0.00 0.00 3.86
1159 1207 1.039785 TCACCCAGCTCGAGATCCTG 61.040 60.000 18.75 13.82 0.00 3.86
1163 1211 1.456518 CAGCTCGAGATCCTGGGGA 60.457 63.158 18.75 0.00 35.55 4.81
1224 1272 1.001633 GCTCCTCTCCGGTAACAACAA 59.998 52.381 0.00 0.00 0.00 2.83
1226 1274 3.522553 CTCCTCTCCGGTAACAACAATC 58.477 50.000 0.00 0.00 0.00 2.67
1235 1285 2.620627 GGTAACAACAATCCCTCCCCAG 60.621 54.545 0.00 0.00 0.00 4.45
1281 1337 1.799519 CGTCAGTCAGCTCACGCTC 60.800 63.158 0.00 0.00 45.15 5.03
1282 1338 1.287191 GTCAGTCAGCTCACGCTCA 59.713 57.895 0.00 0.00 45.15 4.26
1283 1339 1.006314 GTCAGTCAGCTCACGCTCAC 61.006 60.000 0.00 0.00 45.15 3.51
1284 1340 2.085262 CAGTCAGCTCACGCTCACG 61.085 63.158 0.00 0.00 45.15 4.35
1285 1341 3.474034 GTCAGCTCACGCTCACGC 61.474 66.667 0.00 0.00 45.15 5.34
1473 1541 2.218759 CGATTTACAGGCCGATTCTTCG 59.781 50.000 0.00 0.00 45.08 3.79
1476 1544 3.872511 TTACAGGCCGATTCTTCGTTA 57.127 42.857 0.00 0.00 43.97 3.18
1482 1550 2.028883 GGCCGATTCTTCGTTACTTTCG 59.971 50.000 0.00 0.00 43.97 3.46
1489 1558 3.054878 TCTTCGTTACTTTCGCCAAGAC 58.945 45.455 1.57 0.00 36.21 3.01
1492 1561 1.868498 CGTTACTTTCGCCAAGACCAA 59.132 47.619 1.57 0.00 36.21 3.67
1508 1577 3.265995 AGACCAACCCCAATTACTACTGG 59.734 47.826 0.00 0.00 0.00 4.00
1509 1578 2.990998 ACCAACCCCAATTACTACTGGT 59.009 45.455 0.00 0.00 0.00 4.00
1510 1579 3.399983 ACCAACCCCAATTACTACTGGTT 59.600 43.478 0.00 0.00 36.56 3.67
1562 1633 4.685169 TGGAGTTTTTGATTCGATCTGC 57.315 40.909 0.00 0.00 0.00 4.26
1792 1875 2.560105 GGCTGCATTTCCAGACTTTCTT 59.440 45.455 0.50 0.00 37.88 2.52
1864 1947 6.132791 TCTGGTATGAGCTTAAGACTTACG 57.867 41.667 6.67 0.00 0.00 3.18
1865 1948 4.679662 TGGTATGAGCTTAAGACTTACGC 58.320 43.478 14.22 14.22 0.00 4.42
1880 1968 4.110482 ACTTACGCGTCACTCATATTTCC 58.890 43.478 18.63 0.00 0.00 3.13
1963 2051 7.335422 AGAGCATCGTTCTCTGAATTAACATTT 59.665 33.333 3.75 0.00 42.67 2.32
1984 2072 7.485913 ACATTTGTTCATAATTTGACGAGATGC 59.514 33.333 0.00 0.00 32.84 3.91
2039 2128 6.229936 ACCATGCAAGCTCATAATTTGATT 57.770 33.333 0.00 0.00 32.72 2.57
2040 2129 6.046593 ACCATGCAAGCTCATAATTTGATTG 58.953 36.000 0.00 0.00 32.72 2.67
2041 2130 6.127281 ACCATGCAAGCTCATAATTTGATTGA 60.127 34.615 0.00 0.00 32.72 2.57
2047 2137 4.274459 AGCTCATAATTTGATTGAGGCGTC 59.726 41.667 0.00 0.00 37.84 5.19
2106 2196 4.019860 AGTGTTGCTCAGATCCACAAGTAT 60.020 41.667 0.00 0.00 0.00 2.12
2150 2240 9.086336 CAATAAAATTAGTGTTGTATTGGCCTG 57.914 33.333 3.32 0.00 0.00 4.85
2217 2307 2.703416 TCATGAGTGAATGGTGTCTGC 58.297 47.619 0.00 0.00 0.00 4.26
2220 2311 3.213206 TGAGTGAATGGTGTCTGCTTT 57.787 42.857 0.00 0.00 0.00 3.51
2226 2317 3.191162 TGAATGGTGTCTGCTTTATGTGC 59.809 43.478 0.00 0.00 0.00 4.57
2270 2361 3.575687 GGCCCTGAAATAAGCAAGCATAT 59.424 43.478 0.00 0.00 0.00 1.78
2285 2376 7.814642 AGCAAGCATATGATGATTTAAGTAGC 58.185 34.615 6.97 0.00 36.64 3.58
2374 2467 5.412594 TGCTTACTGCCAAGTATTCTTTCAG 59.587 40.000 8.60 8.60 38.69 3.02
2502 2632 5.508224 GCAGACGATTTATAAACAGTTGTGC 59.492 40.000 17.47 17.47 0.00 4.57
2526 2656 3.492337 TCGGCTTGTCCCAACTTAAAAT 58.508 40.909 0.00 0.00 0.00 1.82
2527 2657 3.254657 TCGGCTTGTCCCAACTTAAAATG 59.745 43.478 0.00 0.00 0.00 2.32
2645 2779 4.992688 TGCACCTATTTCTAAAAATGGCG 58.007 39.130 0.00 0.00 35.84 5.69
2646 2780 4.461081 TGCACCTATTTCTAAAAATGGCGT 59.539 37.500 0.00 0.00 35.84 5.68
2686 2822 5.788450 CCTAGTAGAAGTCCATAGCCAATG 58.212 45.833 0.00 0.00 35.15 2.82
2753 2897 2.223829 ACGCCTCTATTTCATCCTGACG 60.224 50.000 0.00 0.00 0.00 4.35
2823 2967 0.968901 ACATCCTCCAGTTCGCCGTA 60.969 55.000 0.00 0.00 0.00 4.02
2988 3132 2.690497 CACGAGGAGCTGGAAGAAGATA 59.310 50.000 0.00 0.00 34.07 1.98
2991 3135 3.320541 CGAGGAGCTGGAAGAAGATATGT 59.679 47.826 0.00 0.00 34.07 2.29
2997 3141 1.230324 GGAAGAAGATATGTGCGGCC 58.770 55.000 0.00 0.00 0.00 6.13
3058 3203 2.362077 CAACAGGCATATAGGGTTTGGC 59.638 50.000 0.00 0.00 36.28 4.52
3091 3236 7.865706 AGACACACTGAACTTCTTGTTTTAT 57.134 32.000 0.00 0.00 39.30 1.40
3095 3240 6.912591 CACACTGAACTTCTTGTTTTATCACC 59.087 38.462 0.00 0.00 39.30 4.02
3126 3271 6.129414 TGCTTCCTTGTATTGTACCCTTTA 57.871 37.500 0.00 0.00 0.00 1.85
3172 3318 6.448053 GTATGCGGTACTACATACACATTG 57.552 41.667 22.82 0.00 45.15 2.82
3174 3320 5.579564 TGCGGTACTACATACACATTGTA 57.420 39.130 0.00 0.00 37.24 2.41
3175 3321 5.342433 TGCGGTACTACATACACATTGTAC 58.658 41.667 0.00 0.00 35.42 2.90
3176 3322 4.741676 GCGGTACTACATACACATTGTACC 59.258 45.833 9.34 9.34 43.59 3.34
3179 3325 4.765813 ACTACATACACATTGTACCCCC 57.234 45.455 0.00 0.00 35.42 5.40
3182 3328 3.460825 ACATACACATTGTACCCCCTCT 58.539 45.455 0.00 0.00 35.42 3.69
3183 3329 3.199946 ACATACACATTGTACCCCCTCTG 59.800 47.826 0.00 0.00 35.42 3.35
3184 3330 1.742308 ACACATTGTACCCCCTCTGT 58.258 50.000 0.00 0.00 0.00 3.41
3185 3331 1.628846 ACACATTGTACCCCCTCTGTC 59.371 52.381 0.00 0.00 0.00 3.51
3186 3332 1.065418 CACATTGTACCCCCTCTGTCC 60.065 57.143 0.00 0.00 0.00 4.02
3187 3333 1.203440 ACATTGTACCCCCTCTGTCCT 60.203 52.381 0.00 0.00 0.00 3.85
3188 3334 2.045326 ACATTGTACCCCCTCTGTCCTA 59.955 50.000 0.00 0.00 0.00 2.94
3189 3335 3.112263 CATTGTACCCCCTCTGTCCTAA 58.888 50.000 0.00 0.00 0.00 2.69
3190 3336 3.278987 TTGTACCCCCTCTGTCCTAAA 57.721 47.619 0.00 0.00 0.00 1.85
3191 3337 3.278987 TGTACCCCCTCTGTCCTAAAA 57.721 47.619 0.00 0.00 0.00 1.52
3192 3338 3.810623 TGTACCCCCTCTGTCCTAAAAT 58.189 45.455 0.00 0.00 0.00 1.82
3193 3339 3.521937 TGTACCCCCTCTGTCCTAAAATG 59.478 47.826 0.00 0.00 0.00 2.32
3195 3341 3.810623 ACCCCCTCTGTCCTAAAATGTA 58.189 45.455 0.00 0.00 0.00 2.29
3196 3342 4.180723 ACCCCCTCTGTCCTAAAATGTAA 58.819 43.478 0.00 0.00 0.00 2.41
3197 3343 4.227527 ACCCCCTCTGTCCTAAAATGTAAG 59.772 45.833 0.00 0.00 0.00 2.34
3198 3344 4.473559 CCCCCTCTGTCCTAAAATGTAAGA 59.526 45.833 0.00 0.00 0.00 2.10
3199 3345 5.429130 CCCCTCTGTCCTAAAATGTAAGAC 58.571 45.833 0.00 0.00 0.00 3.01
3201 3347 6.383147 CCCCTCTGTCCTAAAATGTAAGACTA 59.617 42.308 0.00 0.00 0.00 2.59
3202 3348 7.071321 CCCCTCTGTCCTAAAATGTAAGACTAT 59.929 40.741 0.00 0.00 0.00 2.12
3203 3349 8.487028 CCCTCTGTCCTAAAATGTAAGACTATT 58.513 37.037 0.00 0.00 0.00 1.73
3217 3363 8.738199 TGTAAGACTATTTTTGACACTAGACG 57.262 34.615 0.00 0.00 0.00 4.18
3218 3364 7.811236 TGTAAGACTATTTTTGACACTAGACGG 59.189 37.037 0.00 0.00 0.00 4.79
3219 3365 6.585695 AGACTATTTTTGACACTAGACGGA 57.414 37.500 0.00 0.00 0.00 4.69
3220 3366 6.622549 AGACTATTTTTGACACTAGACGGAG 58.377 40.000 0.00 0.00 0.00 4.63
3221 3367 5.721232 ACTATTTTTGACACTAGACGGAGG 58.279 41.667 0.00 0.00 0.00 4.30
3223 3369 2.297698 TTTGACACTAGACGGAGGGA 57.702 50.000 0.00 0.00 0.00 4.20
3224 3370 1.835494 TTGACACTAGACGGAGGGAG 58.165 55.000 0.00 0.00 0.00 4.30
3225 3371 0.697079 TGACACTAGACGGAGGGAGT 59.303 55.000 0.00 0.00 0.00 3.85
3226 3372 1.911357 TGACACTAGACGGAGGGAGTA 59.089 52.381 0.00 0.00 0.00 2.59
3260 3650 2.287909 GCAGATGTCCTCATACTCGACC 60.288 54.545 0.00 0.00 34.06 4.79
3278 3668 2.776913 CGCCTCGAGAACTCTCCCC 61.777 68.421 15.71 0.00 39.79 4.81
3286 3676 3.202373 TCGAGAACTCTCCCCTCATAGAA 59.798 47.826 1.13 0.00 39.79 2.10
3324 3714 0.115152 TCTGGCAGAGAACCTCTCCA 59.885 55.000 14.43 11.70 44.42 3.86
3362 3752 4.067913 GCGTTCGACCCCCGGTAA 62.068 66.667 0.00 0.00 35.25 2.85
3374 3764 1.743623 CCGGTAAGCGCCATTGACA 60.744 57.895 2.29 0.00 0.00 3.58
3435 3825 0.176680 CTCATCTTGGTCGACCCTGG 59.823 60.000 31.19 19.92 34.29 4.45
3480 3870 2.985486 GATCTCGCCGACGTACCTGC 62.985 65.000 0.00 0.00 41.18 4.85
3492 3882 1.049402 GTACCTGCCTATCACCCTCC 58.951 60.000 0.00 0.00 0.00 4.30
3574 3964 4.101448 GACCACGATGCCAGGGCT 62.101 66.667 12.19 0.00 42.51 5.19
3599 3989 1.228154 GTGGTCCTTCCGGTTGCTT 60.228 57.895 0.00 0.00 39.52 3.91
3649 4407 4.809496 CCTTGGCGGCCTGCTCAT 62.809 66.667 21.46 0.00 45.43 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.125310 CATCGCACAGCCGGGTTA 60.125 61.111 1.64 0.00 0.00 2.85
19 20 4.410400 GTCCCAGGAAGGCCACCG 62.410 72.222 5.01 4.82 36.29 4.94
20 21 4.048470 GGTCCCAGGAAGGCCACC 62.048 72.222 5.01 8.40 36.29 4.61
21 22 4.048470 GGGTCCCAGGAAGGCCAC 62.048 72.222 5.01 0.00 36.29 5.01
22 23 4.608514 TGGGTCCCAGGAAGGCCA 62.609 66.667 6.47 0.00 36.29 5.36
23 24 3.264845 TTGGGTCCCAGGAAGGCC 61.265 66.667 11.40 0.00 33.81 5.19
24 25 2.356667 CTTGGGTCCCAGGAAGGC 59.643 66.667 15.06 0.00 31.89 4.35
25 26 2.356667 GCTTGGGTCCCAGGAAGG 59.643 66.667 23.95 8.13 31.89 3.46
26 27 2.045926 CGCTTGGGTCCCAGGAAG 60.046 66.667 23.95 13.66 31.89 3.46
27 28 3.646715 CCGCTTGGGTCCCAGGAA 61.647 66.667 23.95 2.04 31.89 3.36
45 46 2.892425 GAACATGAGAGGCCGCCG 60.892 66.667 1.49 0.00 0.00 6.46
46 47 1.377202 TTGAACATGAGAGGCCGCC 60.377 57.895 1.49 0.00 0.00 6.13
47 48 0.674895 AGTTGAACATGAGAGGCCGC 60.675 55.000 0.00 0.00 0.00 6.53
48 49 1.813513 AAGTTGAACATGAGAGGCCG 58.186 50.000 0.00 0.00 0.00 6.13
49 50 3.057245 GGAAAAGTTGAACATGAGAGGCC 60.057 47.826 0.00 0.00 0.00 5.19
50 51 3.823304 AGGAAAAGTTGAACATGAGAGGC 59.177 43.478 0.00 0.00 0.00 4.70
51 52 4.153117 CGAGGAAAAGTTGAACATGAGAGG 59.847 45.833 0.00 0.00 0.00 3.69
52 53 4.752101 ACGAGGAAAAGTTGAACATGAGAG 59.248 41.667 0.00 0.00 0.00 3.20
53 54 4.703897 ACGAGGAAAAGTTGAACATGAGA 58.296 39.130 0.00 0.00 0.00 3.27
54 55 5.424121 AACGAGGAAAAGTTGAACATGAG 57.576 39.130 0.00 0.00 0.00 2.90
74 75 3.660111 GCAGCCACCACGGACAAC 61.660 66.667 0.00 0.00 36.56 3.32
93 94 3.103911 CACGAAGGGCGACACGTC 61.104 66.667 4.54 0.00 44.57 4.34
94 95 3.141522 TTCACGAAGGGCGACACGT 62.142 57.895 1.80 1.80 44.57 4.49
95 96 2.355363 TTCACGAAGGGCGACACG 60.355 61.111 0.00 0.00 44.57 4.49
96 97 0.389948 ATCTTCACGAAGGGCGACAC 60.390 55.000 6.94 0.00 44.57 3.67
97 98 0.389817 CATCTTCACGAAGGGCGACA 60.390 55.000 6.94 0.00 44.57 4.35
98 99 1.084370 CCATCTTCACGAAGGGCGAC 61.084 60.000 6.94 0.00 44.57 5.19
99 100 1.218047 CCATCTTCACGAAGGGCGA 59.782 57.895 6.94 0.00 44.57 5.54
100 101 2.859273 AGCCATCTTCACGAAGGGCG 62.859 60.000 16.52 0.00 44.90 6.13
101 102 0.678048 AAGCCATCTTCACGAAGGGC 60.678 55.000 15.39 15.39 42.43 5.19
102 103 1.373570 GAAGCCATCTTCACGAAGGG 58.626 55.000 6.94 2.84 46.14 3.95
103 104 2.704572 AAGAAGCCATCTTCACGAAGG 58.295 47.619 6.94 0.00 45.42 3.46
112 113 1.978361 AGGGGAGAAAGAAGCCATCT 58.022 50.000 0.00 0.00 41.32 2.90
113 114 2.373224 CAAGGGGAGAAAGAAGCCATC 58.627 52.381 0.00 0.00 0.00 3.51
114 115 1.618074 GCAAGGGGAGAAAGAAGCCAT 60.618 52.381 0.00 0.00 0.00 4.40
115 116 0.251341 GCAAGGGGAGAAAGAAGCCA 60.251 55.000 0.00 0.00 0.00 4.75
116 117 0.967887 GGCAAGGGGAGAAAGAAGCC 60.968 60.000 0.00 0.00 0.00 4.35
117 118 0.967887 GGGCAAGGGGAGAAAGAAGC 60.968 60.000 0.00 0.00 0.00 3.86
118 119 0.678048 CGGGCAAGGGGAGAAAGAAG 60.678 60.000 0.00 0.00 0.00 2.85
119 120 1.131303 TCGGGCAAGGGGAGAAAGAA 61.131 55.000 0.00 0.00 0.00 2.52
120 121 1.537889 TCGGGCAAGGGGAGAAAGA 60.538 57.895 0.00 0.00 0.00 2.52
121 122 1.377333 GTCGGGCAAGGGGAGAAAG 60.377 63.158 0.00 0.00 0.00 2.62
122 123 2.754375 GTCGGGCAAGGGGAGAAA 59.246 61.111 0.00 0.00 0.00 2.52
123 124 3.702048 CGTCGGGCAAGGGGAGAA 61.702 66.667 0.00 0.00 0.00 2.87
142 143 4.166011 GTGAGCGATGGCGGCAAC 62.166 66.667 18.31 13.40 46.35 4.17
152 153 2.092291 GCAAATCCGTCGTGAGCGA 61.092 57.895 0.00 0.00 45.79 4.93
153 154 2.395690 GCAAATCCGTCGTGAGCG 59.604 61.111 0.00 0.00 39.92 5.03
154 155 2.785258 GGCAAATCCGTCGTGAGC 59.215 61.111 0.00 0.00 0.00 4.26
163 164 1.814169 GTCGTCTCCCGGCAAATCC 60.814 63.158 0.00 0.00 41.97 3.01
164 165 2.165301 CGTCGTCTCCCGGCAAATC 61.165 63.158 0.00 0.00 42.71 2.17
165 166 2.125673 CGTCGTCTCCCGGCAAAT 60.126 61.111 0.00 0.00 42.71 2.32
166 167 3.154584 AACGTCGTCTCCCGGCAAA 62.155 57.895 0.00 0.00 42.71 3.68
167 168 3.608662 AACGTCGTCTCCCGGCAA 61.609 61.111 0.00 0.00 42.71 4.52
168 169 4.351938 CAACGTCGTCTCCCGGCA 62.352 66.667 0.00 0.00 42.71 5.69
172 173 3.934391 CTGGCCAACGTCGTCTCCC 62.934 68.421 7.01 0.00 0.00 4.30
173 174 2.432628 CTGGCCAACGTCGTCTCC 60.433 66.667 7.01 0.82 0.00 3.71
174 175 3.112709 GCTGGCCAACGTCGTCTC 61.113 66.667 7.01 0.00 0.00 3.36
175 176 4.681978 GGCTGGCCAACGTCGTCT 62.682 66.667 7.01 0.00 35.81 4.18
176 177 4.681978 AGGCTGGCCAACGTCGTC 62.682 66.667 7.01 0.00 38.92 4.20
177 178 4.988598 CAGGCTGGCCAACGTCGT 62.989 66.667 7.01 0.00 38.92 4.34
179 180 3.628646 ATCCAGGCTGGCCAACGTC 62.629 63.158 29.02 0.00 37.47 4.34
180 181 3.650950 ATCCAGGCTGGCCAACGT 61.651 61.111 29.02 0.00 37.47 3.99
181 182 3.136123 CATCCAGGCTGGCCAACG 61.136 66.667 29.02 10.54 37.47 4.10
182 183 2.757099 CCATCCAGGCTGGCCAAC 60.757 66.667 29.02 0.65 37.47 3.77
183 184 4.064768 CCCATCCAGGCTGGCCAA 62.065 66.667 29.02 12.59 37.47 4.52
191 192 3.882326 ATCGCCAGCCCATCCAGG 61.882 66.667 0.00 0.00 37.03 4.45
192 193 2.593725 CATCGCCAGCCCATCCAG 60.594 66.667 0.00 0.00 0.00 3.86
193 194 4.193893 CCATCGCCAGCCCATCCA 62.194 66.667 0.00 0.00 0.00 3.41
201 202 4.529219 TGCTACCGCCATCGCCAG 62.529 66.667 0.00 0.00 34.43 4.85
202 203 4.830765 GTGCTACCGCCATCGCCA 62.831 66.667 0.00 0.00 34.43 5.69
216 217 2.456287 AAACTCTCTGGAGCCGGTGC 62.456 60.000 1.90 0.00 42.98 5.01
217 218 0.671781 CAAACTCTCTGGAGCCGGTG 60.672 60.000 1.90 0.00 42.98 4.94
218 219 1.674057 CAAACTCTCTGGAGCCGGT 59.326 57.895 1.90 0.00 42.98 5.28
219 220 1.743252 GCAAACTCTCTGGAGCCGG 60.743 63.158 0.00 0.00 42.98 6.13
220 221 1.018226 CAGCAAACTCTCTGGAGCCG 61.018 60.000 0.00 0.00 42.98 5.52
221 222 2.851798 CAGCAAACTCTCTGGAGCC 58.148 57.895 0.00 0.00 42.98 4.70
226 227 0.240411 GCTTGCCAGCAAACTCTCTG 59.760 55.000 4.63 0.00 46.49 3.35
227 228 2.638744 GCTTGCCAGCAAACTCTCT 58.361 52.632 4.63 0.00 46.49 3.10
236 237 0.967380 ATACAGGTTGGCTTGCCAGC 60.967 55.000 18.18 18.18 46.52 4.85
237 238 1.474077 GAATACAGGTTGGCTTGCCAG 59.526 52.381 14.33 5.81 0.00 4.85
238 239 1.544724 GAATACAGGTTGGCTTGCCA 58.455 50.000 10.65 10.65 0.00 4.92
239 240 0.451783 CGAATACAGGTTGGCTTGCC 59.548 55.000 4.43 4.43 0.00 4.52
240 241 0.451783 CCGAATACAGGTTGGCTTGC 59.548 55.000 0.00 0.00 0.00 4.01
241 242 0.451783 GCCGAATACAGGTTGGCTTG 59.548 55.000 0.00 0.00 42.44 4.01
242 243 2.868253 GCCGAATACAGGTTGGCTT 58.132 52.632 0.00 0.00 42.44 4.35
243 244 4.637771 GCCGAATACAGGTTGGCT 57.362 55.556 0.00 0.00 42.44 4.75
244 245 1.583054 CTAGCCGAATACAGGTTGGC 58.417 55.000 0.00 0.00 46.07 4.52
245 246 1.139058 AGCTAGCCGAATACAGGTTGG 59.861 52.381 12.13 0.00 0.00 3.77
246 247 2.474816 GAGCTAGCCGAATACAGGTTG 58.525 52.381 12.13 0.00 0.00 3.77
247 248 1.067212 CGAGCTAGCCGAATACAGGTT 59.933 52.381 12.13 0.00 0.00 3.50
248 249 0.669077 CGAGCTAGCCGAATACAGGT 59.331 55.000 12.13 0.00 0.00 4.00
249 250 0.664767 GCGAGCTAGCCGAATACAGG 60.665 60.000 23.94 1.61 0.00 4.00
250 251 0.999228 CGCGAGCTAGCCGAATACAG 60.999 60.000 23.94 4.83 0.00 2.74
251 252 1.008881 CGCGAGCTAGCCGAATACA 60.009 57.895 23.94 0.00 0.00 2.29
252 253 1.729838 CCGCGAGCTAGCCGAATAC 60.730 63.158 23.94 9.35 0.00 1.89
253 254 2.643272 CCGCGAGCTAGCCGAATA 59.357 61.111 23.94 0.00 0.00 1.75
254 255 4.286320 CCCGCGAGCTAGCCGAAT 62.286 66.667 23.94 1.83 0.00 3.34
270 271 2.282462 CAGTGGTCTGGGTTGCCC 60.282 66.667 0.00 0.00 45.71 5.36
271 272 2.985847 GCAGTGGTCTGGGTTGCC 60.986 66.667 0.00 0.00 41.57 4.52
272 273 1.181098 ATTGCAGTGGTCTGGGTTGC 61.181 55.000 0.00 0.00 41.57 4.17
273 274 0.599558 CATTGCAGTGGTCTGGGTTG 59.400 55.000 0.32 0.00 41.57 3.77
274 275 0.185901 ACATTGCAGTGGTCTGGGTT 59.814 50.000 14.25 0.00 41.57 4.11
275 276 0.185901 AACATTGCAGTGGTCTGGGT 59.814 50.000 14.25 0.00 41.57 4.51
276 277 0.599558 CAACATTGCAGTGGTCTGGG 59.400 55.000 14.25 0.00 41.57 4.45
277 278 0.599558 CCAACATTGCAGTGGTCTGG 59.400 55.000 14.25 12.46 41.57 3.86
278 279 1.538512 CTCCAACATTGCAGTGGTCTG 59.461 52.381 14.25 7.56 43.87 3.51
279 280 1.421268 TCTCCAACATTGCAGTGGTCT 59.579 47.619 14.25 0.00 0.00 3.85
280 281 1.808945 CTCTCCAACATTGCAGTGGTC 59.191 52.381 14.25 0.00 0.00 4.02
281 282 1.901591 CTCTCCAACATTGCAGTGGT 58.098 50.000 14.25 3.55 0.00 4.16
282 283 0.524862 GCTCTCCAACATTGCAGTGG 59.475 55.000 14.25 7.71 0.00 4.00
283 284 1.467734 GAGCTCTCCAACATTGCAGTG 59.532 52.381 6.43 7.79 0.00 3.66
284 285 1.818642 GAGCTCTCCAACATTGCAGT 58.181 50.000 6.43 0.00 0.00 4.40
296 297 0.179113 CGGCAGAAGAAGGAGCTCTC 60.179 60.000 14.64 4.08 0.00 3.20
297 298 1.896694 CGGCAGAAGAAGGAGCTCT 59.103 57.895 14.64 0.00 0.00 4.09
298 299 1.813337 GCGGCAGAAGAAGGAGCTC 60.813 63.158 4.71 4.71 0.00 4.09
299 300 2.267324 GCGGCAGAAGAAGGAGCT 59.733 61.111 0.00 0.00 0.00 4.09
300 301 2.821810 GGCGGCAGAAGAAGGAGC 60.822 66.667 3.07 0.00 0.00 4.70
301 302 2.507110 TTCGGCGGCAGAAGAAGGAG 62.507 60.000 11.52 0.00 0.00 3.69
302 303 2.507110 CTTCGGCGGCAGAAGAAGGA 62.507 60.000 30.69 3.62 45.78 3.36
303 304 2.047274 TTCGGCGGCAGAAGAAGG 60.047 61.111 11.52 0.00 0.00 3.46
304 305 3.479370 CTTCGGCGGCAGAAGAAG 58.521 61.111 30.69 19.96 45.78 2.85
307 308 2.510238 CCTCTTCGGCGGCAGAAG 60.510 66.667 29.24 29.24 44.65 2.85
316 317 0.322456 TTGTGGAATGGCCTCTTCGG 60.322 55.000 3.32 0.00 37.63 4.30
317 318 1.089920 CTTGTGGAATGGCCTCTTCG 58.910 55.000 3.32 0.00 37.63 3.79
318 319 2.087646 GTCTTGTGGAATGGCCTCTTC 58.912 52.381 3.32 7.21 37.63 2.87
319 320 1.707427 AGTCTTGTGGAATGGCCTCTT 59.293 47.619 3.32 0.00 37.63 2.85
320 321 1.366319 AGTCTTGTGGAATGGCCTCT 58.634 50.000 3.32 0.00 37.63 3.69
321 322 2.206576 AAGTCTTGTGGAATGGCCTC 57.793 50.000 3.32 0.00 37.63 4.70
322 323 2.242043 CAAAGTCTTGTGGAATGGCCT 58.758 47.619 3.32 0.00 37.63 5.19
323 324 1.273327 CCAAAGTCTTGTGGAATGGCC 59.727 52.381 0.00 0.00 37.03 5.36
324 325 2.229784 CTCCAAAGTCTTGTGGAATGGC 59.770 50.000 13.89 0.00 43.32 4.40
325 326 2.229784 GCTCCAAAGTCTTGTGGAATGG 59.770 50.000 13.89 5.52 43.32 3.16
326 327 2.229784 GGCTCCAAAGTCTTGTGGAATG 59.770 50.000 13.89 7.68 43.32 2.67
327 328 2.519013 GGCTCCAAAGTCTTGTGGAAT 58.481 47.619 13.89 0.00 43.32 3.01
328 329 1.813862 CGGCTCCAAAGTCTTGTGGAA 60.814 52.381 13.89 3.66 43.32 3.53
329 330 0.250295 CGGCTCCAAAGTCTTGTGGA 60.250 55.000 12.88 12.88 41.72 4.02
330 331 1.237285 CCGGCTCCAAAGTCTTGTGG 61.237 60.000 0.00 7.22 36.13 4.17
331 332 0.250295 TCCGGCTCCAAAGTCTTGTG 60.250 55.000 0.00 0.00 0.00 3.33
332 333 0.472471 TTCCGGCTCCAAAGTCTTGT 59.528 50.000 0.00 0.00 0.00 3.16
333 334 1.160137 CTTCCGGCTCCAAAGTCTTG 58.840 55.000 0.00 0.00 0.00 3.02
334 335 0.606673 GCTTCCGGCTCCAAAGTCTT 60.607 55.000 0.00 0.00 38.06 3.01
335 336 1.003233 GCTTCCGGCTCCAAAGTCT 60.003 57.895 0.00 0.00 38.06 3.24
336 337 2.041115 GGCTTCCGGCTCCAAAGTC 61.041 63.158 0.00 0.00 41.46 3.01
337 338 2.034221 GGCTTCCGGCTCCAAAGT 59.966 61.111 0.00 0.00 41.46 2.66
338 339 0.107214 TATGGCTTCCGGCTCCAAAG 60.107 55.000 12.10 4.57 41.46 2.77
339 340 0.329931 TTATGGCTTCCGGCTCCAAA 59.670 50.000 12.10 6.61 41.46 3.28
340 341 0.107214 CTTATGGCTTCCGGCTCCAA 60.107 55.000 12.10 0.00 41.46 3.53
341 342 0.980754 TCTTATGGCTTCCGGCTCCA 60.981 55.000 10.78 10.78 41.46 3.86
342 343 0.180406 TTCTTATGGCTTCCGGCTCC 59.820 55.000 0.00 0.00 41.46 4.70
343 344 1.876156 CATTCTTATGGCTTCCGGCTC 59.124 52.381 0.00 0.00 41.46 4.70
344 345 1.212935 ACATTCTTATGGCTTCCGGCT 59.787 47.619 0.00 0.00 41.46 5.52
345 346 1.334869 CACATTCTTATGGCTTCCGGC 59.665 52.381 0.00 0.00 36.01 6.13
346 347 1.949525 CCACATTCTTATGGCTTCCGG 59.050 52.381 0.00 0.00 36.01 5.14
347 348 1.949525 CCCACATTCTTATGGCTTCCG 59.050 52.381 0.00 0.00 36.01 4.30
348 349 3.018423 ACCCACATTCTTATGGCTTCC 57.982 47.619 0.00 0.00 36.01 3.46
349 350 4.523083 TGTACCCACATTCTTATGGCTTC 58.477 43.478 0.00 0.00 36.01 3.86
350 351 4.227300 TCTGTACCCACATTCTTATGGCTT 59.773 41.667 0.00 0.00 36.01 4.35
351 352 3.780294 TCTGTACCCACATTCTTATGGCT 59.220 43.478 0.00 0.00 36.01 4.75
352 353 4.130118 CTCTGTACCCACATTCTTATGGC 58.870 47.826 0.00 0.00 36.01 4.40
353 354 5.453903 CCTCTCTGTACCCACATTCTTATGG 60.454 48.000 0.00 0.00 36.01 2.74
354 355 5.363868 TCCTCTCTGTACCCACATTCTTATG 59.636 44.000 0.00 0.00 37.79 1.90
355 356 5.529289 TCCTCTCTGTACCCACATTCTTAT 58.471 41.667 0.00 0.00 33.14 1.73
356 357 4.942944 TCCTCTCTGTACCCACATTCTTA 58.057 43.478 0.00 0.00 33.14 2.10
357 358 3.772025 CTCCTCTCTGTACCCACATTCTT 59.228 47.826 0.00 0.00 33.14 2.52
358 359 3.011821 TCTCCTCTCTGTACCCACATTCT 59.988 47.826 0.00 0.00 33.14 2.40
359 360 3.366396 TCTCCTCTCTGTACCCACATTC 58.634 50.000 0.00 0.00 33.14 2.67
360 361 3.474798 TCTCCTCTCTGTACCCACATT 57.525 47.619 0.00 0.00 33.14 2.71
361 362 3.303938 CATCTCCTCTCTGTACCCACAT 58.696 50.000 0.00 0.00 33.14 3.21
362 363 2.624293 CCATCTCCTCTCTGTACCCACA 60.624 54.545 0.00 0.00 0.00 4.17
363 364 2.035632 CCATCTCCTCTCTGTACCCAC 58.964 57.143 0.00 0.00 0.00 4.61
364 365 1.930204 TCCATCTCCTCTCTGTACCCA 59.070 52.381 0.00 0.00 0.00 4.51
365 366 2.175931 TCTCCATCTCCTCTCTGTACCC 59.824 54.545 0.00 0.00 0.00 3.69
366 367 3.486383 CTCTCCATCTCCTCTCTGTACC 58.514 54.545 0.00 0.00 0.00 3.34
367 368 3.137544 TCCTCTCCATCTCCTCTCTGTAC 59.862 52.174 0.00 0.00 0.00 2.90
368 369 3.394274 CTCCTCTCCATCTCCTCTCTGTA 59.606 52.174 0.00 0.00 0.00 2.74
369 370 2.175499 CTCCTCTCCATCTCCTCTCTGT 59.825 54.545 0.00 0.00 0.00 3.41
370 371 2.489619 CCTCCTCTCCATCTCCTCTCTG 60.490 59.091 0.00 0.00 0.00 3.35
371 372 1.782752 CCTCCTCTCCATCTCCTCTCT 59.217 57.143 0.00 0.00 0.00 3.10
372 373 1.203050 CCCTCCTCTCCATCTCCTCTC 60.203 61.905 0.00 0.00 0.00 3.20
373 374 0.859760 CCCTCCTCTCCATCTCCTCT 59.140 60.000 0.00 0.00 0.00 3.69
374 375 0.178935 CCCCTCCTCTCCATCTCCTC 60.179 65.000 0.00 0.00 0.00 3.71
375 376 1.673928 CCCCCTCCTCTCCATCTCCT 61.674 65.000 0.00 0.00 0.00 3.69
376 377 1.152139 CCCCCTCCTCTCCATCTCC 60.152 68.421 0.00 0.00 0.00 3.71
377 378 0.178935 CTCCCCCTCCTCTCCATCTC 60.179 65.000 0.00 0.00 0.00 2.75
378 379 0.631998 TCTCCCCCTCCTCTCCATCT 60.632 60.000 0.00 0.00 0.00 2.90
379 380 0.491371 ATCTCCCCCTCCTCTCCATC 59.509 60.000 0.00 0.00 0.00 3.51
380 381 0.193069 CATCTCCCCCTCCTCTCCAT 59.807 60.000 0.00 0.00 0.00 3.41
381 382 1.628727 CATCTCCCCCTCCTCTCCA 59.371 63.158 0.00 0.00 0.00 3.86
382 383 1.152139 CCATCTCCCCCTCCTCTCC 60.152 68.421 0.00 0.00 0.00 3.71
383 384 0.178935 CTCCATCTCCCCCTCCTCTC 60.179 65.000 0.00 0.00 0.00 3.20
384 385 0.631998 TCTCCATCTCCCCCTCCTCT 60.632 60.000 0.00 0.00 0.00 3.69
385 386 0.178935 CTCTCCATCTCCCCCTCCTC 60.179 65.000 0.00 0.00 0.00 3.71
386 387 1.673928 CCTCTCCATCTCCCCCTCCT 61.674 65.000 0.00 0.00 0.00 3.69
387 388 1.152139 CCTCTCCATCTCCCCCTCC 60.152 68.421 0.00 0.00 0.00 4.30
388 389 0.178935 CTCCTCTCCATCTCCCCCTC 60.179 65.000 0.00 0.00 0.00 4.30
389 390 1.673928 CCTCCTCTCCATCTCCCCCT 61.674 65.000 0.00 0.00 0.00 4.79
390 391 1.152139 CCTCCTCTCCATCTCCCCC 60.152 68.421 0.00 0.00 0.00 5.40
391 392 1.152139 CCCTCCTCTCCATCTCCCC 60.152 68.421 0.00 0.00 0.00 4.81
392 393 1.152139 CCCCTCCTCTCCATCTCCC 60.152 68.421 0.00 0.00 0.00 4.30
393 394 1.152139 CCCCCTCCTCTCCATCTCC 60.152 68.421 0.00 0.00 0.00 3.71
394 395 0.762461 CACCCCCTCCTCTCCATCTC 60.762 65.000 0.00 0.00 0.00 2.75
395 396 1.316266 CACCCCCTCCTCTCCATCT 59.684 63.158 0.00 0.00 0.00 2.90
396 397 1.003573 ACACCCCCTCCTCTCCATC 59.996 63.158 0.00 0.00 0.00 3.51
397 398 1.307343 CACACCCCCTCCTCTCCAT 60.307 63.158 0.00 0.00 0.00 3.41
398 399 2.122729 CACACCCCCTCCTCTCCA 59.877 66.667 0.00 0.00 0.00 3.86
399 400 2.689034 CCACACCCCCTCCTCTCC 60.689 72.222 0.00 0.00 0.00 3.71
400 401 2.122954 ACCACACCCCCTCCTCTC 59.877 66.667 0.00 0.00 0.00 3.20
401 402 2.203998 CACCACACCCCCTCCTCT 60.204 66.667 0.00 0.00 0.00 3.69
402 403 2.529389 ACACCACACCCCCTCCTC 60.529 66.667 0.00 0.00 0.00 3.71
403 404 2.713111 ATCACACCACACCCCCTCCT 62.713 60.000 0.00 0.00 0.00 3.69
404 405 1.789576 AATCACACCACACCCCCTCC 61.790 60.000 0.00 0.00 0.00 4.30
405 406 0.322546 GAATCACACCACACCCCCTC 60.323 60.000 0.00 0.00 0.00 4.30
406 407 0.772124 AGAATCACACCACACCCCCT 60.772 55.000 0.00 0.00 0.00 4.79
407 408 0.112412 AAGAATCACACCACACCCCC 59.888 55.000 0.00 0.00 0.00 5.40
408 409 1.247567 CAAGAATCACACCACACCCC 58.752 55.000 0.00 0.00 0.00 4.95
409 410 0.598065 GCAAGAATCACACCACACCC 59.402 55.000 0.00 0.00 0.00 4.61
410 411 0.598065 GGCAAGAATCACACCACACC 59.402 55.000 0.00 0.00 0.00 4.16
411 412 1.267806 CAGGCAAGAATCACACCACAC 59.732 52.381 0.00 0.00 0.00 3.82
412 413 1.142667 TCAGGCAAGAATCACACCACA 59.857 47.619 0.00 0.00 0.00 4.17
413 414 1.896220 TCAGGCAAGAATCACACCAC 58.104 50.000 0.00 0.00 0.00 4.16
414 415 2.439409 CATCAGGCAAGAATCACACCA 58.561 47.619 0.00 0.00 0.00 4.17
415 416 1.133790 GCATCAGGCAAGAATCACACC 59.866 52.381 0.00 0.00 43.97 4.16
416 417 2.556534 GCATCAGGCAAGAATCACAC 57.443 50.000 0.00 0.00 43.97 3.82
428 429 3.925630 AACGTGGCCAGGCATCAGG 62.926 63.158 25.03 11.12 0.00 3.86
429 430 0.676466 TAAACGTGGCCAGGCATCAG 60.676 55.000 25.03 3.74 0.00 2.90
430 431 0.250945 TTAAACGTGGCCAGGCATCA 60.251 50.000 25.03 0.00 0.00 3.07
431 432 0.885196 TTTAAACGTGGCCAGGCATC 59.115 50.000 25.03 2.39 0.00 3.91
432 433 1.555967 ATTTAAACGTGGCCAGGCAT 58.444 45.000 25.03 16.00 0.00 4.40
433 434 2.088423 CTATTTAAACGTGGCCAGGCA 58.912 47.619 25.03 8.07 0.00 4.75
434 435 1.404035 CCTATTTAAACGTGGCCAGGC 59.596 52.381 25.03 1.26 0.00 4.85
435 436 2.021457 CCCTATTTAAACGTGGCCAGG 58.979 52.381 23.61 23.61 0.00 4.45
436 437 2.021457 CCCCTATTTAAACGTGGCCAG 58.979 52.381 5.11 2.58 0.00 4.85
437 438 1.341187 CCCCCTATTTAAACGTGGCCA 60.341 52.381 0.00 0.00 0.00 5.36
438 439 1.395635 CCCCCTATTTAAACGTGGCC 58.604 55.000 0.00 0.00 0.00 5.36
439 440 0.742505 GCCCCCTATTTAAACGTGGC 59.257 55.000 0.00 0.00 0.00 5.01
440 441 1.018910 CGCCCCCTATTTAAACGTGG 58.981 55.000 0.00 0.00 0.00 4.94
441 442 1.018910 CCGCCCCCTATTTAAACGTG 58.981 55.000 0.00 0.00 0.00 4.49
442 443 0.911053 TCCGCCCCCTATTTAAACGT 59.089 50.000 0.00 0.00 0.00 3.99
443 444 1.877443 CATCCGCCCCCTATTTAAACG 59.123 52.381 0.00 0.00 0.00 3.60
444 445 1.611977 GCATCCGCCCCCTATTTAAAC 59.388 52.381 0.00 0.00 0.00 2.01
445 446 1.215673 TGCATCCGCCCCCTATTTAAA 59.784 47.619 0.00 0.00 37.32 1.52
446 447 0.847373 TGCATCCGCCCCCTATTTAA 59.153 50.000 0.00 0.00 37.32 1.52
447 448 0.847373 TTGCATCCGCCCCCTATTTA 59.153 50.000 0.00 0.00 37.32 1.40
448 449 0.468029 CTTGCATCCGCCCCCTATTT 60.468 55.000 0.00 0.00 37.32 1.40
449 450 1.151450 CTTGCATCCGCCCCCTATT 59.849 57.895 0.00 0.00 37.32 1.73
450 451 2.056906 GACTTGCATCCGCCCCCTAT 62.057 60.000 0.00 0.00 37.32 2.57
451 452 2.690881 ACTTGCATCCGCCCCCTA 60.691 61.111 0.00 0.00 37.32 3.53
452 453 4.115199 GACTTGCATCCGCCCCCT 62.115 66.667 0.00 0.00 37.32 4.79
463 464 3.423154 CTCCGGTTGGCGACTTGC 61.423 66.667 0.00 0.00 45.38 4.01
464 465 1.738099 CTCTCCGGTTGGCGACTTG 60.738 63.158 0.00 0.00 34.14 3.16
465 466 2.657237 CTCTCCGGTTGGCGACTT 59.343 61.111 0.00 0.00 34.14 3.01
466 467 3.382832 CCTCTCCGGTTGGCGACT 61.383 66.667 0.00 0.00 34.14 4.18
467 468 3.692406 ACCTCTCCGGTTGGCGAC 61.692 66.667 0.00 0.00 46.37 5.19
468 469 3.691342 CACCTCTCCGGTTGGCGA 61.691 66.667 0.00 0.00 46.37 5.54
469 470 3.530910 AACACCTCTCCGGTTGGCG 62.531 63.158 0.00 0.00 46.37 5.69
470 471 1.671379 GAACACCTCTCCGGTTGGC 60.671 63.158 0.00 0.00 46.37 4.52
471 472 1.003718 GGAACACCTCTCCGGTTGG 60.004 63.158 0.00 4.89 46.37 3.77
472 473 1.752198 TGGAACACCTCTCCGGTTG 59.248 57.895 0.00 0.00 46.37 3.77
473 474 4.306245 TGGAACACCTCTCCGGTT 57.694 55.556 0.00 0.00 46.37 4.44
485 486 2.112297 TCCGCCCTTGTGTGGAAC 59.888 61.111 0.00 0.00 41.80 3.62
486 487 2.112297 GTCCGCCCTTGTGTGGAA 59.888 61.111 0.00 0.00 45.97 3.53
487 488 4.308458 CGTCCGCCCTTGTGTGGA 62.308 66.667 0.00 0.00 42.49 4.02
488 489 4.619227 ACGTCCGCCCTTGTGTGG 62.619 66.667 0.00 0.00 37.24 4.17
489 490 3.345808 CACGTCCGCCCTTGTGTG 61.346 66.667 0.00 0.00 0.00 3.82
490 491 3.857038 ACACGTCCGCCCTTGTGT 61.857 61.111 0.00 0.00 40.51 3.72
491 492 3.345808 CACACGTCCGCCCTTGTG 61.346 66.667 0.00 0.00 38.28 3.33
492 493 4.619227 CCACACGTCCGCCCTTGT 62.619 66.667 0.00 0.00 0.00 3.16
510 511 4.169696 TATTCCGGCACCCCAGCG 62.170 66.667 0.00 0.00 34.64 5.18
511 512 2.203209 CTATTCCGGCACCCCAGC 60.203 66.667 0.00 0.00 0.00 4.85
512 513 1.921869 AACCTATTCCGGCACCCCAG 61.922 60.000 0.00 0.00 0.00 4.45
513 514 1.502527 AAACCTATTCCGGCACCCCA 61.503 55.000 0.00 0.00 0.00 4.96
514 515 0.547553 TAAACCTATTCCGGCACCCC 59.452 55.000 0.00 0.00 0.00 4.95
515 516 2.651382 ATAAACCTATTCCGGCACCC 57.349 50.000 0.00 0.00 0.00 4.61
516 517 3.671716 CCTATAAACCTATTCCGGCACC 58.328 50.000 0.00 0.00 0.00 5.01
517 518 3.072211 GCCTATAAACCTATTCCGGCAC 58.928 50.000 0.00 0.00 36.37 5.01
518 519 2.706723 TGCCTATAAACCTATTCCGGCA 59.293 45.455 0.00 0.00 43.34 5.69
519 520 3.072211 GTGCCTATAAACCTATTCCGGC 58.928 50.000 0.00 0.00 36.85 6.13
520 521 4.315803 CTGTGCCTATAAACCTATTCCGG 58.684 47.826 0.00 0.00 0.00 5.14
521 522 4.315803 CCTGTGCCTATAAACCTATTCCG 58.684 47.826 0.00 0.00 0.00 4.30
522 523 4.072839 GCCTGTGCCTATAAACCTATTCC 58.927 47.826 0.00 0.00 0.00 3.01
523 524 3.746492 CGCCTGTGCCTATAAACCTATTC 59.254 47.826 0.00 0.00 0.00 1.75
524 525 3.740115 CGCCTGTGCCTATAAACCTATT 58.260 45.455 0.00 0.00 0.00 1.73
525 526 2.550208 GCGCCTGTGCCTATAAACCTAT 60.550 50.000 0.00 0.00 0.00 2.57
526 527 1.202604 GCGCCTGTGCCTATAAACCTA 60.203 52.381 0.00 0.00 0.00 3.08
527 528 0.463833 GCGCCTGTGCCTATAAACCT 60.464 55.000 0.00 0.00 0.00 3.50
528 529 2.022520 GCGCCTGTGCCTATAAACC 58.977 57.895 0.00 0.00 0.00 3.27
538 539 2.437716 ATTAACCCGGCGCCTGTG 60.438 61.111 26.68 14.95 0.00 3.66
539 540 2.437716 CATTAACCCGGCGCCTGT 60.438 61.111 26.68 18.84 0.00 4.00
540 541 3.887868 GCATTAACCCGGCGCCTG 61.888 66.667 26.68 19.17 0.00 4.85
547 548 1.343465 ACTAGATCCGGCATTAACCCG 59.657 52.381 0.00 8.94 45.17 5.28
548 549 2.367567 TCACTAGATCCGGCATTAACCC 59.632 50.000 0.00 0.00 0.00 4.11
549 550 3.069729 ACTCACTAGATCCGGCATTAACC 59.930 47.826 0.00 0.00 0.00 2.85
550 551 4.051922 CACTCACTAGATCCGGCATTAAC 58.948 47.826 0.00 0.00 0.00 2.01
551 552 3.069586 CCACTCACTAGATCCGGCATTAA 59.930 47.826 0.00 0.00 0.00 1.40
552 553 2.628178 CCACTCACTAGATCCGGCATTA 59.372 50.000 0.00 0.00 0.00 1.90
553 554 1.414181 CCACTCACTAGATCCGGCATT 59.586 52.381 0.00 0.00 0.00 3.56
554 555 1.043816 CCACTCACTAGATCCGGCAT 58.956 55.000 0.00 0.00 0.00 4.40
555 556 0.324368 ACCACTCACTAGATCCGGCA 60.324 55.000 0.00 0.00 0.00 5.69
556 557 0.386113 GACCACTCACTAGATCCGGC 59.614 60.000 0.00 0.00 0.00 6.13
557 558 1.405821 GTGACCACTCACTAGATCCGG 59.594 57.143 0.00 0.00 43.26 5.14
558 559 1.064208 CGTGACCACTCACTAGATCCG 59.936 57.143 0.00 0.00 44.27 4.18
559 560 2.093106 ACGTGACCACTCACTAGATCC 58.907 52.381 0.00 0.00 44.27 3.36
560 561 2.097791 GGACGTGACCACTCACTAGATC 59.902 54.545 0.00 0.00 44.27 2.75
561 562 2.093106 GGACGTGACCACTCACTAGAT 58.907 52.381 0.00 0.00 44.27 1.98
562 563 1.531423 GGACGTGACCACTCACTAGA 58.469 55.000 0.00 0.00 44.27 2.43
563 564 0.168348 CGGACGTGACCACTCACTAG 59.832 60.000 0.00 0.00 44.27 2.57
564 565 1.859427 GCGGACGTGACCACTCACTA 61.859 60.000 0.00 0.00 44.27 2.74
565 566 3.039988 CGGACGTGACCACTCACT 58.960 61.111 0.00 0.00 44.27 3.41
571 572 3.680786 CCAGAGCGGACGTGACCA 61.681 66.667 0.00 0.00 36.56 4.02
592 593 0.379669 CAGTTGCCCGCATTCATCTC 59.620 55.000 0.00 0.00 0.00 2.75
594 595 1.434696 CCAGTTGCCCGCATTCATC 59.565 57.895 0.00 0.00 0.00 2.92
608 609 0.469892 CTTTCCCACCCAAAGCCAGT 60.470 55.000 0.00 0.00 0.00 4.00
611 612 3.059982 GCTTTCCCACCCAAAGCC 58.940 61.111 5.96 0.00 46.81 4.35
631 632 1.313091 AAATCCTTTTCCTCGGCCGC 61.313 55.000 23.51 0.00 0.00 6.53
638 639 1.977854 GCCACCCAAAATCCTTTTCCT 59.022 47.619 0.00 0.00 0.00 3.36
639 640 1.977854 AGCCACCCAAAATCCTTTTCC 59.022 47.619 0.00 0.00 0.00 3.13
641 642 3.173151 CCTAGCCACCCAAAATCCTTTT 58.827 45.455 0.00 0.00 0.00 2.27
642 643 2.559705 CCCTAGCCACCCAAAATCCTTT 60.560 50.000 0.00 0.00 0.00 3.11
643 644 1.007118 CCCTAGCCACCCAAAATCCTT 59.993 52.381 0.00 0.00 0.00 3.36
668 669 0.450482 CGCTGCCACGTAAACTTTCG 60.450 55.000 0.00 0.00 0.00 3.46
677 678 3.299977 TCTGTACCGCTGCCACGT 61.300 61.111 0.00 0.00 0.00 4.49
678 679 2.809601 GTCTGTACCGCTGCCACG 60.810 66.667 0.00 0.00 0.00 4.94
698 699 0.597568 CAAACTGATGGGCTTTGCGA 59.402 50.000 0.00 0.00 0.00 5.10
705 706 1.620822 ACTGGAACAAACTGATGGGC 58.379 50.000 0.00 0.00 38.70 5.36
711 712 2.842208 TCGCAAACTGGAACAAACTG 57.158 45.000 0.00 0.00 38.70 3.16
713 714 4.912528 TTTTTCGCAAACTGGAACAAAC 57.087 36.364 0.00 0.00 38.70 2.93
737 738 2.961768 GGCCGGTTTGGATGTGTG 59.038 61.111 1.90 0.00 42.00 3.82
738 739 2.671619 CGGCCGGTTTGGATGTGT 60.672 61.111 20.10 0.00 42.00 3.72
756 757 3.966154 ACATGATCTTGTATCGGTCGAC 58.034 45.455 12.27 7.13 0.00 4.20
758 759 3.490896 CCAACATGATCTTGTATCGGTCG 59.509 47.826 14.07 0.00 0.00 4.79
761 762 5.299949 TCATCCAACATGATCTTGTATCGG 58.700 41.667 14.07 14.10 0.00 4.18
762 763 8.031277 TCTATCATCCAACATGATCTTGTATCG 58.969 37.037 14.07 6.69 39.30 2.92
769 770 5.987953 CGTGTTCTATCATCCAACATGATCT 59.012 40.000 0.00 0.00 38.72 2.75
770 771 5.755375 ACGTGTTCTATCATCCAACATGATC 59.245 40.000 0.00 0.00 38.72 2.92
775 776 4.219725 TCAGACGTGTTCTATCATCCAACA 59.780 41.667 0.00 0.00 31.12 3.33
784 785 3.650139 GTGTGGTTCAGACGTGTTCTAT 58.350 45.455 0.00 0.00 31.12 1.98
787 788 0.575390 CGTGTGGTTCAGACGTGTTC 59.425 55.000 9.02 0.00 44.21 3.18
796 797 2.276201 CTGTCAGAAACGTGTGGTTCA 58.724 47.619 0.00 0.00 38.08 3.18
802 803 0.650512 CGCAACTGTCAGAAACGTGT 59.349 50.000 6.91 0.00 0.00 4.49
803 804 0.042188 CCGCAACTGTCAGAAACGTG 60.042 55.000 6.91 0.00 0.00 4.49
804 805 1.157870 CCCGCAACTGTCAGAAACGT 61.158 55.000 6.91 0.00 0.00 3.99
807 808 0.749818 TTGCCCGCAACTGTCAGAAA 60.750 50.000 6.91 0.00 0.00 2.52
809 810 0.537143 AATTGCCCGCAACTGTCAGA 60.537 50.000 6.91 0.00 38.88 3.27
811 812 1.610363 TAAATTGCCCGCAACTGTCA 58.390 45.000 3.85 0.00 38.88 3.58
816 817 2.333926 GACCTTTAAATTGCCCGCAAC 58.666 47.619 3.85 0.00 38.88 4.17
825 826 3.816523 TCTTCAACGCCGACCTTTAAATT 59.183 39.130 0.00 0.00 0.00 1.82
829 830 2.343101 CATCTTCAACGCCGACCTTTA 58.657 47.619 0.00 0.00 0.00 1.85
832 833 1.741770 GCATCTTCAACGCCGACCT 60.742 57.895 0.00 0.00 0.00 3.85
842 843 1.067060 CATCTACCGTCCGCATCTTCA 59.933 52.381 0.00 0.00 0.00 3.02
843 844 1.603172 CCATCTACCGTCCGCATCTTC 60.603 57.143 0.00 0.00 0.00 2.87
855 856 2.095853 CACAACGCAATCACCATCTACC 59.904 50.000 0.00 0.00 0.00 3.18
864 865 1.992667 GAGACGATCACAACGCAATCA 59.007 47.619 0.00 0.00 0.00 2.57
951 953 0.037590 TAAACAGAGGCCGGCACATT 59.962 50.000 30.85 18.12 0.00 2.71
961 969 3.250040 CCCACGAGTTTTGTAAACAGAGG 59.750 47.826 5.23 6.29 0.00 3.69
1023 1065 3.306641 GGAGATGGAGATGGAGGAAATCG 60.307 52.174 0.00 0.00 0.00 3.34
1035 1077 1.456518 CCGGAGCTGGAGATGGAGA 60.457 63.158 0.00 0.00 0.00 3.71
1036 1078 3.136750 CCGGAGCTGGAGATGGAG 58.863 66.667 0.00 0.00 0.00 3.86
1037 1079 3.157252 GCCGGAGCTGGAGATGGA 61.157 66.667 5.05 0.00 35.50 3.41
1159 1207 3.468140 GTGCCGAGGTAGGTCCCC 61.468 72.222 0.00 0.00 36.75 4.81
1163 1211 2.363925 GGAGGTGCCGAGGTAGGT 60.364 66.667 0.00 0.00 0.00 3.08
1235 1285 0.244178 GATCTCGATTAGGGCGGGAC 59.756 60.000 0.00 0.00 41.58 4.46
1473 1541 2.031420 GGTTGGTCTTGGCGAAAGTAAC 60.031 50.000 0.00 0.00 37.18 2.50
1476 1544 0.822121 GGGTTGGTCTTGGCGAAAGT 60.822 55.000 0.00 0.00 37.18 2.66
1482 1550 1.548719 GTAATTGGGGTTGGTCTTGGC 59.451 52.381 0.00 0.00 0.00 4.52
1489 1558 3.732048 ACCAGTAGTAATTGGGGTTGG 57.268 47.619 6.84 0.00 36.81 3.77
1492 1561 6.458630 AAACTAACCAGTAGTAATTGGGGT 57.541 37.500 6.84 0.00 42.55 4.95
1508 1577 5.731957 TTTGGATTTGGGGCTAAACTAAC 57.268 39.130 0.00 0.00 0.00 2.34
1509 1578 6.019748 TGATTTGGATTTGGGGCTAAACTAA 58.980 36.000 0.00 0.00 0.00 2.24
1510 1579 5.584913 TGATTTGGATTTGGGGCTAAACTA 58.415 37.500 0.00 0.00 0.00 2.24
1562 1633 0.607489 CCTTCCCTGGACAAGCACAG 60.607 60.000 0.00 0.00 34.54 3.66
1792 1875 7.540474 ACAAGATCTAACTAAAGACTGACCA 57.460 36.000 0.00 0.00 0.00 4.02
1864 1947 2.810650 AGTCGGAAATATGAGTGACGC 58.189 47.619 0.00 0.00 0.00 5.19
1865 1948 4.421058 TCAAGTCGGAAATATGAGTGACG 58.579 43.478 0.00 0.00 0.00 4.35
1880 1968 5.681639 AGGAAGGGGTTAATAATCAAGTCG 58.318 41.667 0.00 0.00 0.00 4.18
1963 2051 4.494035 GCGCATCTCGTCAAATTATGAACA 60.494 41.667 0.30 0.00 40.50 3.18
1977 2065 0.729116 ACTCCATTTTGCGCATCTCG 59.271 50.000 12.75 0.00 42.12 4.04
1984 2072 4.984161 ACAAATTCTGAACTCCATTTTGCG 59.016 37.500 10.28 0.00 0.00 4.85
2039 2128 1.982395 CTACCAGTGGGACGCCTCA 60.982 63.158 15.21 0.00 41.54 3.86
2040 2129 1.043673 ATCTACCAGTGGGACGCCTC 61.044 60.000 15.21 0.00 41.54 4.70
2041 2130 1.001760 ATCTACCAGTGGGACGCCT 59.998 57.895 15.21 0.00 41.54 5.52
2047 2137 2.290260 TGTTGAAGCATCTACCAGTGGG 60.290 50.000 15.21 0.00 41.29 4.61
2106 2196 8.698973 TTTTATTGAATACAGAAGGACCACAA 57.301 30.769 0.00 0.00 0.00 3.33
2150 2240 6.765512 GCATTATCTTTCCTGCCTCCTATATC 59.234 42.308 0.00 0.00 0.00 1.63
2217 2307 6.032094 CCTATGCACAAGAAAGCACATAAAG 58.968 40.000 0.00 0.00 44.49 1.85
2220 2311 3.378112 GCCTATGCACAAGAAAGCACATA 59.622 43.478 0.00 0.00 44.49 2.29
2226 2317 4.380233 CCAGAAAGCCTATGCACAAGAAAG 60.380 45.833 0.00 0.00 41.13 2.62
2270 2361 7.661437 AGTCAAACACTGCTACTTAAATCATCA 59.339 33.333 0.00 0.00 32.26 3.07
2316 2407 9.693739 TTCTCTTAAAATATGCTATTTGGACCA 57.306 29.630 0.00 0.00 0.00 4.02
2347 2439 6.472887 AAAGAATACTTGGCAGTAAGCACTA 58.527 36.000 0.00 0.00 39.05 2.74
2374 2467 6.812160 AGTTTAGATGTTGTACGGATGACTTC 59.188 38.462 0.00 0.00 0.00 3.01
2526 2656 2.143122 CTAAGCTTTGCGGTCAAGTCA 58.857 47.619 3.20 0.00 33.12 3.41
2527 2657 1.135944 GCTAAGCTTTGCGGTCAAGTC 60.136 52.381 16.87 0.00 33.12 3.01
2564 2696 7.386851 TCTGGAACAAGTTCAGTAGAAATAGG 58.613 38.462 14.25 0.00 41.20 2.57
2645 2779 3.930634 AGGCAAGAAGAAAATGAGCAC 57.069 42.857 0.00 0.00 0.00 4.40
2646 2780 4.655963 ACTAGGCAAGAAGAAAATGAGCA 58.344 39.130 0.00 0.00 0.00 4.26
2729 2868 2.032620 AGGATGAAATAGAGGCGTCGT 58.967 47.619 0.00 0.00 0.00 4.34
2753 2897 1.678101 AGCTGCAACCAGTGAACTTTC 59.322 47.619 1.02 0.00 41.26 2.62
2823 2967 1.729470 CGTAGAGCTGACCGAGGCAT 61.729 60.000 0.00 0.00 0.00 4.40
2970 3114 4.630111 CACATATCTTCTTCCAGCTCCTC 58.370 47.826 0.00 0.00 0.00 3.71
2988 3132 1.240641 TTTGATGAACGGCCGCACAT 61.241 50.000 28.89 28.89 0.00 3.21
2991 3135 2.976840 GCTTTGATGAACGGCCGCA 61.977 57.895 28.58 17.45 0.00 5.69
2997 3141 2.069273 ACCTTCTCGCTTTGATGAACG 58.931 47.619 0.00 0.00 0.00 3.95
3043 3187 1.691196 TGCAGCCAAACCCTATATGC 58.309 50.000 0.00 0.00 0.00 3.14
3046 3190 1.356059 TGGTTGCAGCCAAACCCTATA 59.644 47.619 21.17 0.00 37.88 1.31
3047 3191 0.114168 TGGTTGCAGCCAAACCCTAT 59.886 50.000 21.17 0.00 37.88 2.57
3048 3192 0.105964 TTGGTTGCAGCCAAACCCTA 60.106 50.000 30.18 8.94 44.67 3.53
3049 3193 1.382420 TTGGTTGCAGCCAAACCCT 60.382 52.632 30.18 0.00 44.67 4.34
3050 3194 1.069596 CTTGGTTGCAGCCAAACCC 59.930 57.895 31.28 0.92 46.59 4.11
3058 3203 1.667236 TCAGTGTGTCTTGGTTGCAG 58.333 50.000 0.00 0.00 0.00 4.41
3067 3212 7.552687 TGATAAAACAAGAAGTTCAGTGTGTCT 59.447 33.333 11.66 4.31 40.26 3.41
3091 3236 3.960102 ACAAGGAAGCAAATTTCTGGTGA 59.040 39.130 0.00 0.00 28.37 4.02
3095 3240 7.542130 GGTACAATACAAGGAAGCAAATTTCTG 59.458 37.037 0.00 0.00 0.00 3.02
3126 3271 7.391148 ACTTGTTTCAGACAATGTAGTTTGT 57.609 32.000 0.00 0.00 46.58 2.83
3155 3301 5.453762 GGGGGTACAATGTGTATGTAGTACC 60.454 48.000 10.29 10.29 46.62 3.34
3168 3314 1.584724 AGGACAGAGGGGGTACAATG 58.415 55.000 0.00 0.00 0.00 2.82
3169 3315 3.502051 TTAGGACAGAGGGGGTACAAT 57.498 47.619 0.00 0.00 0.00 2.71
3171 3317 3.278987 TTTTAGGACAGAGGGGGTACA 57.721 47.619 0.00 0.00 0.00 2.90
3172 3318 3.522343 ACATTTTAGGACAGAGGGGGTAC 59.478 47.826 0.00 0.00 0.00 3.34
3174 3320 2.644151 ACATTTTAGGACAGAGGGGGT 58.356 47.619 0.00 0.00 0.00 4.95
3175 3321 4.473559 TCTTACATTTTAGGACAGAGGGGG 59.526 45.833 0.00 0.00 0.00 5.40
3176 3322 5.189934 AGTCTTACATTTTAGGACAGAGGGG 59.810 44.000 0.00 0.00 0.00 4.79
3191 3337 9.355215 CGTCTAGTGTCAAAAATAGTCTTACAT 57.645 33.333 0.00 0.00 0.00 2.29
3192 3338 7.811236 CCGTCTAGTGTCAAAAATAGTCTTACA 59.189 37.037 0.00 0.00 0.00 2.41
3193 3339 8.025445 TCCGTCTAGTGTCAAAAATAGTCTTAC 58.975 37.037 0.00 0.00 0.00 2.34
3195 3341 6.989659 TCCGTCTAGTGTCAAAAATAGTCTT 58.010 36.000 0.00 0.00 0.00 3.01
3196 3342 6.350277 CCTCCGTCTAGTGTCAAAAATAGTCT 60.350 42.308 0.00 0.00 0.00 3.24
3197 3343 5.805994 CCTCCGTCTAGTGTCAAAAATAGTC 59.194 44.000 0.00 0.00 0.00 2.59
3198 3344 5.337330 CCCTCCGTCTAGTGTCAAAAATAGT 60.337 44.000 0.00 0.00 0.00 2.12
3199 3345 5.105473 TCCCTCCGTCTAGTGTCAAAAATAG 60.105 44.000 0.00 0.00 0.00 1.73
3201 3347 3.581332 TCCCTCCGTCTAGTGTCAAAAAT 59.419 43.478 0.00 0.00 0.00 1.82
3202 3348 2.967201 TCCCTCCGTCTAGTGTCAAAAA 59.033 45.455 0.00 0.00 0.00 1.94
3203 3349 2.561419 CTCCCTCCGTCTAGTGTCAAAA 59.439 50.000 0.00 0.00 0.00 2.44
3205 3351 1.075050 ACTCCCTCCGTCTAGTGTCAA 59.925 52.381 0.00 0.00 0.00 3.18
3206 3352 0.697079 ACTCCCTCCGTCTAGTGTCA 59.303 55.000 0.00 0.00 0.00 3.58
3207 3353 2.706339 TACTCCCTCCGTCTAGTGTC 57.294 55.000 0.00 0.00 0.00 3.67
3209 3355 4.023021 GCTTAATACTCCCTCCGTCTAGTG 60.023 50.000 0.00 0.00 0.00 2.74
3210 3356 4.143543 GCTTAATACTCCCTCCGTCTAGT 58.856 47.826 0.00 0.00 0.00 2.57
3211 3357 4.142790 TGCTTAATACTCCCTCCGTCTAG 58.857 47.826 0.00 0.00 0.00 2.43
3212 3358 4.174704 TGCTTAATACTCCCTCCGTCTA 57.825 45.455 0.00 0.00 0.00 2.59
3214 3360 3.455327 GTTGCTTAATACTCCCTCCGTC 58.545 50.000 0.00 0.00 0.00 4.79
3216 3362 2.434702 AGGTTGCTTAATACTCCCTCCG 59.565 50.000 0.00 0.00 0.00 4.63
3217 3363 4.200092 CAAGGTTGCTTAATACTCCCTCC 58.800 47.826 0.00 0.00 0.00 4.30
3260 3650 2.776913 GGGGAGAGTTCTCGAGGCG 61.777 68.421 13.56 0.00 43.76 5.52
3286 3676 3.249189 TGCGGGTTGAGAAGGGCT 61.249 61.111 0.00 0.00 0.00 5.19
3324 3714 2.581354 GCTGCTCTCGGTGGACAT 59.419 61.111 0.00 0.00 0.00 3.06
3362 3752 2.457743 TACGGGTTGTCAATGGCGCT 62.458 55.000 7.64 0.00 0.00 5.92
3435 3825 1.703438 CTGGAGAGCAAGCATGTCGC 61.703 60.000 0.00 0.00 42.91 5.19
3480 3870 1.418334 CTGGTGAGGAGGGTGATAGG 58.582 60.000 0.00 0.00 0.00 2.57
3492 3882 2.674380 GCACAAGGGGCTGGTGAG 60.674 66.667 0.00 0.00 37.60 3.51
3574 3964 2.583441 CGGAAGGACCACTGGCTGA 61.583 63.158 0.00 0.00 38.90 4.26
3599 3989 3.864983 AAGAGGGGCCAAGGACCGA 62.865 63.158 4.39 0.00 46.59 4.69
3602 3992 2.361737 GCAAGAGGGGCCAAGGAC 60.362 66.667 4.39 0.00 0.00 3.85
3649 4407 1.113517 GCCTACATCGACAGGGGCTA 61.114 60.000 12.21 0.00 36.96 3.93
3799 4557 2.202440 CGCCACCGTCGTCTACAG 60.202 66.667 0.00 0.00 0.00 2.74
3961 4719 2.437343 GCGACGAGAACGGCTTCAG 61.437 63.158 0.00 0.00 46.46 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.