Multiple sequence alignment - TraesCS3D01G079000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G079000 chr3D 100.000 5525 0 0 934 6458 39340112 39334588 0.000000e+00 10203.0
1 TraesCS3D01G079000 chr3D 100.000 661 0 0 1 661 39341045 39340385 0.000000e+00 1221.0
2 TraesCS3D01G079000 chr3D 88.372 215 19 4 3740 3950 39337095 39336883 2.990000e-63 254.0
3 TraesCS3D01G079000 chr3D 88.318 214 21 3 3951 4163 39337306 39337096 2.990000e-63 254.0
4 TraesCS3D01G079000 chr3B 93.625 5114 211 51 934 6002 62396807 62391764 0.000000e+00 7531.0
5 TraesCS3D01G079000 chr3B 85.823 395 41 9 1 390 62397563 62397179 7.800000e-109 405.0
6 TraesCS3D01G079000 chr3B 92.632 285 14 4 377 661 62397161 62396884 2.800000e-108 403.0
7 TraesCS3D01G079000 chr3B 89.815 216 11 4 6252 6458 62391674 62391461 3.840000e-67 267.0
8 TraesCS3D01G079000 chr3B 89.151 212 19 3 3951 4161 62393999 62393791 1.790000e-65 261.0
9 TraesCS3D01G079000 chr3B 87.500 216 26 1 3736 3950 62393793 62393578 1.390000e-61 248.0
10 TraesCS3D01G079000 chr3B 89.916 119 11 1 6035 6152 734434706 734434588 1.120000e-32 152.0
11 TraesCS3D01G079000 chr3A 94.023 3664 128 28 2401 6026 50750193 50746583 0.000000e+00 5469.0
12 TraesCS3D01G079000 chr3A 92.360 1479 74 15 934 2405 50751766 50750320 0.000000e+00 2069.0
13 TraesCS3D01G079000 chr3A 95.122 205 9 1 6154 6358 50746583 50746380 8.080000e-84 322.0
14 TraesCS3D01G079000 chr3A 87.407 270 13 8 363 616 50752133 50751869 2.280000e-74 291.0
15 TraesCS3D01G079000 chr3A 90.187 214 17 3 3951 4163 50748860 50748650 6.380000e-70 276.0
16 TraesCS3D01G079000 chr3A 90.500 200 16 2 3753 3950 50748636 50748438 1.790000e-65 261.0
17 TraesCS3D01G079000 chr2D 96.892 547 17 0 2758 3304 13706993 13707539 0.000000e+00 917.0
18 TraesCS3D01G079000 chr2D 95.556 90 3 1 3466 3554 208540141 208540230 6.750000e-30 143.0
19 TraesCS3D01G079000 chr2D 94.505 91 1 3 3466 3554 300888182 300888270 3.140000e-28 137.0
20 TraesCS3D01G079000 chr5D 92.623 122 8 1 6033 6153 58140396 58140517 2.390000e-39 174.0
21 TraesCS3D01G079000 chr5D 93.182 88 3 2 3468 3554 350331950 350331865 6.800000e-25 126.0
22 TraesCS3D01G079000 chr7D 91.057 123 9 2 6033 6154 309508734 309508855 1.440000e-36 165.0
23 TraesCS3D01G079000 chr5B 91.525 118 10 0 6033 6150 57017592 57017475 5.180000e-36 163.0
24 TraesCS3D01G079000 chr5B 93.182 88 4 1 3467 3554 511838099 511838014 1.890000e-25 128.0
25 TraesCS3D01G079000 chr7B 89.344 122 13 0 6033 6154 304960147 304960026 3.120000e-33 154.0
26 TraesCS3D01G079000 chr4A 97.561 82 2 0 6039 6120 734107568 734107487 2.430000e-29 141.0
27 TraesCS3D01G079000 chr4A 92.222 90 5 1 3468 3557 152612043 152611956 6.800000e-25 126.0
28 TraesCS3D01G079000 chr2B 88.696 115 13 0 6033 6147 412993901 412994015 2.430000e-29 141.0
29 TraesCS3D01G079000 chr2B 93.407 91 5 1 3466 3555 262903640 262903730 4.060000e-27 134.0
30 TraesCS3D01G079000 chr6A 87.603 121 14 1 6033 6153 100668136 100668017 8.730000e-29 139.0
31 TraesCS3D01G079000 chr6D 88.073 109 9 3 3462 3566 426888319 426888427 6.800000e-25 126.0
32 TraesCS3D01G079000 chr4D 93.939 66 4 0 6033 6098 64366523 64366458 4.120000e-17 100.0
33 TraesCS3D01G079000 chr4D 97.619 42 1 0 6108 6149 64366426 64366385 8.980000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G079000 chr3D 39334588 39341045 6457 True 2983.000000 10203 94.172500 1 6458 4 chr3D.!!$R1 6457
1 TraesCS3D01G079000 chr3B 62391461 62397563 6102 True 1519.166667 7531 89.757667 1 6458 6 chr3B.!!$R2 6457
2 TraesCS3D01G079000 chr3A 50746380 50752133 5753 True 1448.000000 5469 91.599833 363 6358 6 chr3A.!!$R1 5995
3 TraesCS3D01G079000 chr2D 13706993 13707539 546 False 917.000000 917 96.892000 2758 3304 1 chr2D.!!$F1 546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
502 544 0.183492 CCCACCATCCATCGTCCATT 59.817 55.000 0.00 0.0 0.00 3.16 F
1014 1067 0.322456 CCCTGCTCAAATCAACCGGA 60.322 55.000 9.46 0.0 0.00 5.14 F
2034 2098 0.329596 ACTTGTTCCATCTCCAGGCC 59.670 55.000 0.00 0.0 0.00 5.19 F
2701 2897 0.540365 AATCTGGCAACTGGTGGGTG 60.540 55.000 0.00 0.0 35.97 4.61 F
3192 3388 2.103771 AGAAAGTGCTGAGCTTCTGTCA 59.896 45.455 17.40 0.0 0.00 3.58 F
4835 5067 1.471684 GAGGAAGCAATCAAGTGCCTG 59.528 52.381 0.00 0.0 46.14 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1547 1609 0.107654 GAACTTATGGGAGCACGGCT 60.108 55.000 0.00 0.00 43.88 5.52 R
2058 2122 0.109272 TACTGAGCCTCGACTTTGCG 60.109 55.000 0.00 0.00 0.00 4.85 R
3646 3858 1.531365 TCCAGCAGTGGCCAAAAGG 60.531 57.895 7.24 5.75 44.60 3.11 R
4480 4712 4.511527 AGAGCATTCTCAATCAATCACGT 58.488 39.130 0.00 0.00 41.81 4.49 R
4920 5152 0.240145 GTTAGGCCGGAACAACTTGC 59.760 55.000 5.05 0.00 0.00 4.01 R
6083 6380 0.034337 GCGGGTGGAGTTACTGTTGA 59.966 55.000 0.00 0.00 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 0.836606 TGAGTGAAGGAAGGTGCACA 59.163 50.000 20.43 0.00 33.85 4.57
49 50 6.790285 TGTTACTTTTGTCCGGTTTATCTC 57.210 37.500 0.00 0.00 0.00 2.75
61 62 0.640495 TTTATCTCCCGGGGTCTCCT 59.360 55.000 23.50 2.26 0.00 3.69
65 66 4.393778 TCCCGGGGTCTCCTGTCC 62.394 72.222 23.50 0.00 37.74 4.02
106 107 2.679059 CGCATCCTCACCTTCTTGTCAT 60.679 50.000 0.00 0.00 0.00 3.06
151 152 3.947910 AATGTGCAAGAAACCCATCAG 57.052 42.857 0.00 0.00 0.00 2.90
156 158 0.972471 CAAGAAACCCATCAGGCCCC 60.972 60.000 0.00 0.00 40.58 5.80
157 159 2.440247 GAAACCCATCAGGCCCCG 60.440 66.667 0.00 0.00 40.58 5.73
183 185 4.516698 GCCTTTTGTTGAGAACATGAGAGA 59.483 41.667 0.00 0.00 41.79 3.10
186 188 6.654161 CCTTTTGTTGAGAACATGAGAGAGAT 59.346 38.462 0.00 0.00 41.79 2.75
187 189 7.821359 CCTTTTGTTGAGAACATGAGAGAGATA 59.179 37.037 0.00 0.00 41.79 1.98
192 194 3.831911 GAGAACATGAGAGAGATAGGGGG 59.168 52.174 0.00 0.00 0.00 5.40
217 219 5.067283 GAAAGAGGTTCTAAACTTGGCACAA 59.933 40.000 0.00 0.00 37.01 3.33
229 231 1.603456 TGGCACAAATGATCACGTGT 58.397 45.000 16.51 13.28 31.92 4.49
230 232 1.952990 TGGCACAAATGATCACGTGTT 59.047 42.857 16.51 7.23 31.92 3.32
231 233 2.360483 TGGCACAAATGATCACGTGTTT 59.640 40.909 16.51 5.72 31.92 2.83
232 234 2.979813 GGCACAAATGATCACGTGTTTC 59.020 45.455 16.51 14.03 0.00 2.78
236 238 5.331756 GCACAAATGATCACGTGTTTCTTTG 60.332 40.000 16.51 20.44 0.00 2.77
240 242 7.706179 ACAAATGATCACGTGTTTCTTTGAATT 59.294 29.630 26.81 14.91 0.00 2.17
255 257 9.677567 TTTCTTTGAATTTATTTCAGTCTTCCG 57.322 29.630 0.00 0.00 44.90 4.30
259 261 3.713826 TTTATTTCAGTCTTCCGGGCT 57.286 42.857 0.00 0.00 0.00 5.19
264 266 2.160721 TCAGTCTTCCGGGCTCTATT 57.839 50.000 0.00 0.00 0.00 1.73
266 268 2.035632 CAGTCTTCCGGGCTCTATTCT 58.964 52.381 0.00 0.00 0.00 2.40
280 282 6.465035 GGGCTCTATTCTTTCAGTGGTATCAT 60.465 42.308 0.00 0.00 0.00 2.45
293 295 1.002087 GGTATCATGTCCCCATCGACC 59.998 57.143 0.00 0.00 31.35 4.79
295 297 1.438469 ATCATGTCCCCATCGACCAT 58.562 50.000 0.00 0.00 31.35 3.55
303 309 2.833943 TCCCCATCGACCATGATCTATG 59.166 50.000 0.00 0.00 33.80 2.23
304 310 2.833943 CCCCATCGACCATGATCTATGA 59.166 50.000 3.11 0.00 39.21 2.15
311 317 3.977579 CGACCATGATCTATGACGACTTG 59.022 47.826 0.00 0.00 39.21 3.16
312 318 4.261197 CGACCATGATCTATGACGACTTGA 60.261 45.833 0.00 0.00 39.21 3.02
316 322 5.862860 CCATGATCTATGACGACTTGATCAG 59.137 44.000 16.61 0.00 44.11 2.90
320 326 7.323420 TGATCTATGACGACTTGATCAGTTTT 58.677 34.615 0.00 0.00 38.67 2.43
326 332 7.351414 TGACGACTTGATCAGTTTTAAGATG 57.649 36.000 0.00 0.00 35.01 2.90
331 337 7.330946 CGACTTGATCAGTTTTAAGATGTACCA 59.669 37.037 0.00 0.00 35.01 3.25
335 341 8.547967 TGATCAGTTTTAAGATGTACCAACTC 57.452 34.615 0.00 0.00 0.00 3.01
336 342 8.154203 TGATCAGTTTTAAGATGTACCAACTCA 58.846 33.333 0.00 0.00 0.00 3.41
347 353 1.813513 ACCAACTCAGCCATTCGAAG 58.186 50.000 3.35 0.00 0.00 3.79
356 362 2.554032 CAGCCATTCGAAGGTGTTTCTT 59.446 45.455 9.21 0.00 33.44 2.52
358 364 2.351738 GCCATTCGAAGGTGTTTCTTGG 60.352 50.000 9.21 6.67 34.07 3.61
359 365 2.228822 CCATTCGAAGGTGTTTCTTGGG 59.771 50.000 9.21 0.00 33.44 4.12
360 366 1.975660 TTCGAAGGTGTTTCTTGGGG 58.024 50.000 0.00 0.00 33.44 4.96
362 368 1.491332 TCGAAGGTGTTTCTTGGGGAA 59.509 47.619 0.00 0.00 33.44 3.97
422 460 1.525175 AGAGGGAGATAGAGGGACGT 58.475 55.000 0.00 0.00 0.00 4.34
497 539 2.679342 CCCACCCACCATCCATCGT 61.679 63.158 0.00 0.00 0.00 3.73
499 541 1.153168 CACCCACCATCCATCGTCC 60.153 63.158 0.00 0.00 0.00 4.79
500 542 1.615124 ACCCACCATCCATCGTCCA 60.615 57.895 0.00 0.00 0.00 4.02
501 543 0.988145 ACCCACCATCCATCGTCCAT 60.988 55.000 0.00 0.00 0.00 3.41
502 544 0.183492 CCCACCATCCATCGTCCATT 59.817 55.000 0.00 0.00 0.00 3.16
503 545 1.597742 CCACCATCCATCGTCCATTC 58.402 55.000 0.00 0.00 0.00 2.67
504 546 1.220529 CACCATCCATCGTCCATTCG 58.779 55.000 0.00 0.00 0.00 3.34
508 550 0.393077 ATCCATCGTCCATTCGTCCC 59.607 55.000 0.00 0.00 0.00 4.46
622 675 0.916086 TATCCATCCACCACCACCAC 59.084 55.000 0.00 0.00 0.00 4.16
640 693 0.398318 ACAAGACACCAGAAGAGGCC 59.602 55.000 0.00 0.00 0.00 5.19
979 1032 2.216898 CCTTCCTTGGATCGATTGCTC 58.783 52.381 0.00 0.00 0.00 4.26
980 1033 2.158842 CCTTCCTTGGATCGATTGCTCT 60.159 50.000 0.00 0.00 0.00 4.09
984 1037 2.034685 CCTTGGATCGATTGCTCTCGTA 59.965 50.000 0.00 0.00 39.62 3.43
985 1038 2.776312 TGGATCGATTGCTCTCGTAC 57.224 50.000 0.00 4.57 39.62 3.67
987 1040 1.609555 GGATCGATTGCTCTCGTACCT 59.390 52.381 0.00 0.00 39.62 3.08
988 1041 2.350964 GGATCGATTGCTCTCGTACCTC 60.351 54.545 0.00 3.06 39.62 3.85
989 1042 0.656259 TCGATTGCTCTCGTACCTCG 59.344 55.000 8.07 0.00 39.62 4.63
992 1045 2.017559 ATTGCTCTCGTACCTCGCCC 62.018 60.000 0.00 0.00 39.67 6.13
993 1046 2.829458 GCTCTCGTACCTCGCCCT 60.829 66.667 0.00 0.00 39.67 5.19
1010 1063 0.529378 CCTGCCCTGCTCAAATCAAC 59.471 55.000 0.00 0.00 0.00 3.18
1013 1066 1.937546 GCCCTGCTCAAATCAACCGG 61.938 60.000 0.00 0.00 0.00 5.28
1014 1067 0.322456 CCCTGCTCAAATCAACCGGA 60.322 55.000 9.46 0.00 0.00 5.14
1015 1068 1.089920 CCTGCTCAAATCAACCGGAG 58.910 55.000 9.46 0.00 0.00 4.63
1016 1069 1.339055 CCTGCTCAAATCAACCGGAGA 60.339 52.381 9.46 6.06 0.00 3.71
1017 1070 2.636830 CTGCTCAAATCAACCGGAGAT 58.363 47.619 9.46 8.58 0.00 2.75
1019 1072 1.943340 GCTCAAATCAACCGGAGATCC 59.057 52.381 9.46 0.00 0.00 3.36
1020 1073 2.565841 CTCAAATCAACCGGAGATCCC 58.434 52.381 9.46 0.00 0.00 3.85
1021 1074 1.211949 TCAAATCAACCGGAGATCCCC 59.788 52.381 9.46 0.00 0.00 4.81
1040 1093 1.617322 CGATCCCCCTGTCGATTAGA 58.383 55.000 0.00 0.00 40.11 2.10
1137 1190 4.838486 CGCGAGCCTCGACCAGAC 62.838 72.222 20.05 0.00 43.74 3.51
1177 1230 0.375454 CGGCGCATCATTTTCCGTTA 59.625 50.000 10.83 0.00 35.75 3.18
1215 1271 4.377708 TCGCGCTCCATGTGTGCT 62.378 61.111 5.56 0.00 38.62 4.40
1336 1392 1.374758 AAGAAGCCCGACAAGAGCG 60.375 57.895 0.00 0.00 0.00 5.03
1422 1481 4.514577 CGTGCCGCCGGAGAAGAT 62.515 66.667 7.68 0.00 0.00 2.40
1497 1559 4.394712 ACCTTCAAGCTCGGCCCG 62.395 66.667 0.00 0.00 0.00 6.13
1547 1609 2.254951 CGACGCCAGCAAATGCAA 59.745 55.556 8.28 0.00 45.16 4.08
1628 1690 3.985925 CAGACATTTTTCCTTGCTTGCTC 59.014 43.478 0.00 0.00 0.00 4.26
1804 1868 2.049627 GATCGCTTGCTGGAGGGGAT 62.050 60.000 10.24 10.24 35.79 3.85
1906 1970 4.646492 GCCATGAGGGTCAGTAATCAAATT 59.354 41.667 0.00 0.00 39.65 1.82
1998 2062 6.650120 ACTAATTTATCGATGACCTTGGTGT 58.350 36.000 8.54 0.00 0.00 4.16
2006 2070 4.119862 CGATGACCTTGGTGTTATAGTGG 58.880 47.826 0.00 0.00 0.00 4.00
2019 2083 5.581085 GTGTTATAGTGGTGCCTCTAACTTG 59.419 44.000 4.41 0.00 29.88 3.16
2022 2086 3.127425 AGTGGTGCCTCTAACTTGTTC 57.873 47.619 0.00 0.00 0.00 3.18
2023 2087 2.152016 GTGGTGCCTCTAACTTGTTCC 58.848 52.381 0.00 0.00 0.00 3.62
2024 2088 1.771854 TGGTGCCTCTAACTTGTTCCA 59.228 47.619 0.00 0.00 0.00 3.53
2034 2098 0.329596 ACTTGTTCCATCTCCAGGCC 59.670 55.000 0.00 0.00 0.00 5.19
2058 2122 1.055338 GCGCACAGAACATTGAAAGC 58.945 50.000 0.30 0.00 0.00 3.51
2166 2230 1.187567 GGGCAGTGTTGGGAATGCTT 61.188 55.000 0.00 0.00 38.71 3.91
2203 2267 6.867662 ATGACCTTGTTTCTTGACTACTTG 57.132 37.500 0.00 0.00 0.00 3.16
2246 2310 7.068103 CACTATGGCAACCTATGAAATAAACCA 59.932 37.037 0.00 0.00 0.00 3.67
2268 2332 1.626825 CGGGAGAAAACTGGGGTTAGA 59.373 52.381 0.00 0.00 34.90 2.10
2271 2335 4.102681 CGGGAGAAAACTGGGGTTAGATAT 59.897 45.833 0.00 0.00 34.90 1.63
2272 2336 5.397559 CGGGAGAAAACTGGGGTTAGATATT 60.398 44.000 0.00 0.00 34.90 1.28
2273 2337 6.432581 GGGAGAAAACTGGGGTTAGATATTT 58.567 40.000 0.00 0.00 34.90 1.40
2274 2338 6.895756 GGGAGAAAACTGGGGTTAGATATTTT 59.104 38.462 0.00 0.00 34.90 1.82
2275 2339 7.399191 GGGAGAAAACTGGGGTTAGATATTTTT 59.601 37.037 0.00 0.00 34.90 1.94
2294 2359 3.829886 TTTTTCTGTGCCGCTAGAATG 57.170 42.857 10.21 0.00 33.34 2.67
2351 2416 5.397334 GCCTTGGATCTCCTGAGAATAAAGT 60.397 44.000 0.20 0.00 41.36 2.66
2487 2683 4.082245 CCAGTCTGGTTTCTTGTTTGTGTT 60.082 41.667 11.09 0.00 31.35 3.32
2488 2684 5.469479 CAGTCTGGTTTCTTGTTTGTGTTT 58.531 37.500 0.00 0.00 0.00 2.83
2489 2685 6.349777 CCAGTCTGGTTTCTTGTTTGTGTTTA 60.350 38.462 11.09 0.00 31.35 2.01
2557 2753 9.561069 AGTACTTTTACACAATGAATCTCTGTT 57.439 29.630 0.00 0.00 0.00 3.16
2649 2845 6.283694 TCTGTTATATTGGACAGACAGATGC 58.716 40.000 10.48 0.00 45.26 3.91
2701 2897 0.540365 AATCTGGCAACTGGTGGGTG 60.540 55.000 0.00 0.00 35.97 4.61
2743 2939 5.934781 ACTTCTCATTCTGAAAACAGTCCT 58.065 37.500 0.00 0.00 0.00 3.85
2803 2999 5.003804 TCTGAGCCTTGGAAAGTGAAATAC 58.996 41.667 0.00 0.00 44.25 1.89
3098 3294 2.106338 TCATTGCTCACTGGTTTCTCCA 59.894 45.455 0.00 0.00 45.01 3.86
3180 3376 6.754209 CGATCACTTACTATGAAGAAAGTGCT 59.246 38.462 8.76 0.43 45.34 4.40
3192 3388 2.103771 AGAAAGTGCTGAGCTTCTGTCA 59.896 45.455 17.40 0.00 0.00 3.58
3210 3406 4.195416 TGTCAAAATTGCCCAAAAAGGAC 58.805 39.130 0.00 0.00 41.22 3.85
3707 3919 6.902341 TCAAAGAAACAGTCTTGTATGATGC 58.098 36.000 0.00 0.00 46.36 3.91
3846 4058 9.290988 TGTGAAGGCATAATAACTTGAAAACTA 57.709 29.630 0.00 0.00 0.00 2.24
3891 4103 3.201353 TGTGATTCTTTCCGTTCCACA 57.799 42.857 0.00 0.00 0.00 4.17
3916 4128 7.970061 CACACAAAGATACAGGGTTCATTTATG 59.030 37.037 0.00 0.00 0.00 1.90
4067 4281 2.166254 ACTTGAAAACTGCCACCTGTTG 59.834 45.455 0.00 0.00 33.99 3.33
4116 4330 3.064207 GTTCCACGCACAAAGATACAGA 58.936 45.455 0.00 0.00 0.00 3.41
4117 4331 2.959516 TCCACGCACAAAGATACAGAG 58.040 47.619 0.00 0.00 0.00 3.35
4348 4574 4.502171 TGCATCAATACAAGTGTTGGTG 57.498 40.909 15.80 15.80 43.06 4.17
4614 4846 6.430000 CGAATACCCTTATTTATTCACCCAGG 59.570 42.308 0.00 0.00 35.32 4.45
4763 4995 2.373502 AGCAACCTCTCTAGCCAAAGTT 59.626 45.455 0.00 0.00 0.00 2.66
4835 5067 1.471684 GAGGAAGCAATCAAGTGCCTG 59.528 52.381 0.00 0.00 46.14 4.85
4841 5073 1.888512 GCAATCAAGTGCCTGGAGAAA 59.111 47.619 0.00 0.00 38.66 2.52
4850 5082 2.560105 GTGCCTGGAGAAATTGAAGCTT 59.440 45.455 0.00 0.00 0.00 3.74
4916 5148 3.388552 ACCCCTTCATCTTTGATTCCC 57.611 47.619 0.00 0.00 0.00 3.97
4920 5152 1.331756 CTTCATCTTTGATTCCCGGCG 59.668 52.381 0.00 0.00 0.00 6.46
4923 5155 0.679640 ATCTTTGATTCCCGGCGCAA 60.680 50.000 10.83 0.00 0.00 4.85
4941 5173 1.535462 CAAGTTGTTCCGGCCTAACTG 59.465 52.381 16.18 5.33 33.95 3.16
5183 5416 1.013596 TCTGTCGTGGCACAAACAAG 58.986 50.000 19.09 13.60 44.16 3.16
5209 5442 1.444895 AAGGCCGCGTTGTACGTAG 60.445 57.895 4.92 0.00 44.73 3.51
5224 5457 6.047511 TGTACGTAGTCTAGGAGAGTTCTT 57.952 41.667 6.57 0.00 43.93 2.52
5241 5474 4.213482 AGTTCTTTTCACTGTCGCCAATAC 59.787 41.667 0.00 0.00 0.00 1.89
5315 5549 2.107726 AGGGGTAAGGTGAAACTTGTCC 59.892 50.000 0.00 0.00 36.74 4.02
5330 5564 1.371558 GTCCGAAGCTCCCTGTTGT 59.628 57.895 0.00 0.00 0.00 3.32
5358 5592 2.126346 CGACCGACCCCGTTGTAC 60.126 66.667 0.00 0.00 0.00 2.90
5506 5741 6.641169 AGGAAAAATTCTCAGGTCTTGAAC 57.359 37.500 0.00 0.00 34.81 3.18
5522 5757 3.211803 TGAACTCGTATCTTGTGACGG 57.788 47.619 0.00 0.00 39.53 4.79
5525 5760 2.434428 ACTCGTATCTTGTGACGGACT 58.566 47.619 0.00 0.00 39.53 3.85
5563 5798 0.461961 CGCTAGCTAGCCAGGTCTTT 59.538 55.000 34.27 0.00 46.34 2.52
5564 5799 1.681793 CGCTAGCTAGCCAGGTCTTTA 59.318 52.381 34.27 0.00 46.34 1.85
5565 5800 2.297597 CGCTAGCTAGCCAGGTCTTTAT 59.702 50.000 34.27 0.00 46.34 1.40
5566 5801 3.506455 CGCTAGCTAGCCAGGTCTTTATA 59.494 47.826 34.27 0.00 46.34 0.98
5567 5802 4.022242 CGCTAGCTAGCCAGGTCTTTATAA 60.022 45.833 34.27 0.00 46.34 0.98
5604 5839 3.372206 CAGGCACTCGTGGAGAATAAAAG 59.628 47.826 0.00 0.00 34.60 2.27
5621 5856 7.827729 AGAATAAAAGGTAGGAAAACGTGCTAT 59.172 33.333 0.00 0.00 32.10 2.97
5622 5857 5.622770 AAAAGGTAGGAAAACGTGCTATG 57.377 39.130 0.00 0.00 32.10 2.23
5623 5858 3.261981 AGGTAGGAAAACGTGCTATGG 57.738 47.619 0.00 0.00 32.10 2.74
5624 5859 2.570302 AGGTAGGAAAACGTGCTATGGT 59.430 45.455 0.00 0.00 32.10 3.55
5625 5860 2.934553 GGTAGGAAAACGTGCTATGGTC 59.065 50.000 0.00 0.00 32.10 4.02
5651 5886 3.052036 CTGGCCATTTCGTTTGAGTTTG 58.948 45.455 5.51 0.00 0.00 2.93
5662 5897 2.849880 TTGAGTTTGCTGTGAGTTGC 57.150 45.000 0.00 0.00 0.00 4.17
5698 5933 9.726438 ATTAGGACTGGTAGCATTGTTATAATC 57.274 33.333 0.00 0.00 0.00 1.75
5699 5934 6.223852 AGGACTGGTAGCATTGTTATAATCG 58.776 40.000 0.00 0.00 0.00 3.34
5743 5984 3.892918 CTGAAGTCAGCAAGAAACAGG 57.107 47.619 0.00 0.00 37.15 4.00
5792 6033 0.179067 ACGGGTCTTCGCTTGACAAA 60.179 50.000 0.00 0.00 36.26 2.83
5839 6093 8.044908 GGGATTAAAAAGTAGGTCTGTCACATA 58.955 37.037 0.00 0.00 0.00 2.29
5848 6102 9.601217 AAGTAGGTCTGTCACATAATATTGAAC 57.399 33.333 0.00 0.00 0.00 3.18
5939 6206 4.006780 TGTGCATGTGTATTGACTGTCT 57.993 40.909 9.51 0.00 0.00 3.41
5988 6255 5.419760 TCTGACCGAACTAATGTATCTCG 57.580 43.478 0.00 0.00 0.00 4.04
6002 6299 4.486090 TGTATCTCGAGAACAAAGTGCTC 58.514 43.478 20.91 0.00 34.99 4.26
6003 6300 3.951775 ATCTCGAGAACAAAGTGCTCT 57.048 42.857 20.91 0.00 36.13 4.09
6004 6301 3.018598 TCTCGAGAACAAAGTGCTCTG 57.981 47.619 14.01 0.00 36.13 3.35
6005 6302 2.362397 TCTCGAGAACAAAGTGCTCTGT 59.638 45.455 14.01 0.00 36.13 3.41
6006 6303 3.126831 CTCGAGAACAAAGTGCTCTGTT 58.873 45.455 6.58 0.00 36.13 3.16
6007 6304 3.531538 TCGAGAACAAAGTGCTCTGTTT 58.468 40.909 3.81 0.00 36.13 2.83
6008 6305 3.938963 TCGAGAACAAAGTGCTCTGTTTT 59.061 39.130 3.81 0.00 36.13 2.43
6009 6306 4.034048 TCGAGAACAAAGTGCTCTGTTTTC 59.966 41.667 3.81 0.00 36.13 2.29
6010 6307 4.602006 GAGAACAAAGTGCTCTGTTTTCC 58.398 43.478 2.02 0.00 35.44 3.13
6011 6308 4.016444 AGAACAAAGTGCTCTGTTTTCCA 58.984 39.130 2.02 0.00 35.93 3.53
6012 6309 4.096984 AGAACAAAGTGCTCTGTTTTCCAG 59.903 41.667 2.02 0.00 42.97 3.86
6013 6310 2.689983 ACAAAGTGCTCTGTTTTCCAGG 59.310 45.455 0.00 0.00 41.83 4.45
6014 6311 1.986882 AAGTGCTCTGTTTTCCAGGG 58.013 50.000 0.00 0.00 45.21 4.45
6015 6312 0.111253 AGTGCTCTGTTTTCCAGGGG 59.889 55.000 0.00 0.00 42.42 4.79
6016 6313 1.228552 TGCTCTGTTTTCCAGGGGC 60.229 57.895 0.00 0.00 42.42 5.80
6017 6314 1.228552 GCTCTGTTTTCCAGGGGCA 60.229 57.895 0.00 0.00 42.42 5.36
6018 6315 1.246737 GCTCTGTTTTCCAGGGGCAG 61.247 60.000 0.00 0.00 42.42 4.85
6019 6316 0.401738 CTCTGTTTTCCAGGGGCAGA 59.598 55.000 0.00 0.00 41.83 4.26
6020 6317 0.850100 TCTGTTTTCCAGGGGCAGAA 59.150 50.000 0.00 0.00 41.83 3.02
6021 6318 1.428912 TCTGTTTTCCAGGGGCAGAAT 59.571 47.619 0.00 0.00 41.83 2.40
6022 6319 2.647299 TCTGTTTTCCAGGGGCAGAATA 59.353 45.455 0.00 0.00 41.83 1.75
6023 6320 3.075283 TCTGTTTTCCAGGGGCAGAATAA 59.925 43.478 0.00 0.00 41.83 1.40
6024 6321 3.430453 TGTTTTCCAGGGGCAGAATAAG 58.570 45.455 0.00 0.00 0.00 1.73
6025 6322 3.075283 TGTTTTCCAGGGGCAGAATAAGA 59.925 43.478 0.00 0.00 0.00 2.10
6026 6323 3.366052 TTTCCAGGGGCAGAATAAGAC 57.634 47.619 0.00 0.00 0.00 3.01
6027 6324 1.213296 TCCAGGGGCAGAATAAGACC 58.787 55.000 0.00 0.00 0.00 3.85
6032 6329 2.808906 GGGCAGAATAAGACCCTGTT 57.191 50.000 0.00 0.00 39.42 3.16
6033 6330 2.644676 GGGCAGAATAAGACCCTGTTC 58.355 52.381 0.00 0.00 39.42 3.18
6034 6331 2.644676 GGCAGAATAAGACCCTGTTCC 58.355 52.381 0.00 0.00 0.00 3.62
6035 6332 2.280628 GCAGAATAAGACCCTGTTCCG 58.719 52.381 0.00 0.00 0.00 4.30
6036 6333 2.280628 CAGAATAAGACCCTGTTCCGC 58.719 52.381 0.00 0.00 0.00 5.54
6037 6334 1.134788 AGAATAAGACCCTGTTCCGCG 60.135 52.381 0.00 0.00 0.00 6.46
6038 6335 0.899720 AATAAGACCCTGTTCCGCGA 59.100 50.000 8.23 0.00 0.00 5.87
6039 6336 0.899720 ATAAGACCCTGTTCCGCGAA 59.100 50.000 8.23 0.00 0.00 4.70
6040 6337 0.680618 TAAGACCCTGTTCCGCGAAA 59.319 50.000 8.23 0.00 0.00 3.46
6041 6338 0.036306 AAGACCCTGTTCCGCGAAAT 59.964 50.000 8.23 0.00 0.00 2.17
6042 6339 0.391263 AGACCCTGTTCCGCGAAATC 60.391 55.000 8.23 0.00 0.00 2.17
6043 6340 1.366854 GACCCTGTTCCGCGAAATCC 61.367 60.000 8.23 0.00 0.00 3.01
6044 6341 2.112815 CCCTGTTCCGCGAAATCCC 61.113 63.158 8.23 0.00 0.00 3.85
6045 6342 2.112815 CCTGTTCCGCGAAATCCCC 61.113 63.158 8.23 0.00 0.00 4.81
6046 6343 2.435234 TGTTCCGCGAAATCCCCG 60.435 61.111 8.23 0.00 0.00 5.73
6047 6344 3.199891 GTTCCGCGAAATCCCCGG 61.200 66.667 8.23 0.00 43.21 5.73
6049 6346 3.845259 TCCGCGAAATCCCCGGAG 61.845 66.667 8.23 0.00 45.30 4.63
6051 6348 4.530857 CGCGAAATCCCCGGAGCT 62.531 66.667 0.73 0.00 0.00 4.09
6052 6349 2.897350 GCGAAATCCCCGGAGCTG 60.897 66.667 0.73 0.00 0.00 4.24
6053 6350 2.897350 CGAAATCCCCGGAGCTGC 60.897 66.667 0.73 0.00 0.00 5.25
6054 6351 2.897350 GAAATCCCCGGAGCTGCG 60.897 66.667 21.89 21.89 0.00 5.18
6055 6352 4.489771 AAATCCCCGGAGCTGCGG 62.490 66.667 36.86 36.86 0.00 5.69
6070 6367 2.032528 CGGAGCCAGGAAACAGCA 59.967 61.111 0.00 0.00 34.58 4.41
6071 6368 2.037136 CGGAGCCAGGAAACAGCAG 61.037 63.158 0.00 0.00 34.58 4.24
6072 6369 2.338785 GGAGCCAGGAAACAGCAGC 61.339 63.158 0.00 0.00 34.58 5.25
6073 6370 1.303155 GAGCCAGGAAACAGCAGCT 60.303 57.895 0.00 0.00 34.58 4.24
6074 6371 1.303155 AGCCAGGAAACAGCAGCTC 60.303 57.895 0.00 0.00 34.58 4.09
6075 6372 2.338785 GCCAGGAAACAGCAGCTCC 61.339 63.158 0.00 0.00 32.59 4.70
6076 6373 2.037136 CCAGGAAACAGCAGCTCCG 61.037 63.158 0.00 0.00 34.22 4.63
6077 6374 2.359230 AGGAAACAGCAGCTCCGC 60.359 61.111 0.00 0.00 34.22 5.54
6078 6375 2.359230 GGAAACAGCAGCTCCGCT 60.359 61.111 0.00 0.00 45.21 5.52
6079 6376 1.079127 GGAAACAGCAGCTCCGCTA 60.079 57.895 0.00 0.00 41.38 4.26
6080 6377 0.462759 GGAAACAGCAGCTCCGCTAT 60.463 55.000 0.00 0.00 41.38 2.97
6081 6378 1.373570 GAAACAGCAGCTCCGCTATT 58.626 50.000 0.00 0.00 41.38 1.73
6082 6379 1.740025 GAAACAGCAGCTCCGCTATTT 59.260 47.619 2.21 2.21 41.18 1.40
6083 6380 1.826385 AACAGCAGCTCCGCTATTTT 58.174 45.000 0.00 0.00 41.38 1.82
6084 6381 1.373570 ACAGCAGCTCCGCTATTTTC 58.626 50.000 0.00 0.00 41.38 2.29
6085 6382 1.339055 ACAGCAGCTCCGCTATTTTCA 60.339 47.619 0.00 0.00 41.38 2.69
6086 6383 1.739466 CAGCAGCTCCGCTATTTTCAA 59.261 47.619 0.00 0.00 41.38 2.69
6087 6384 1.740025 AGCAGCTCCGCTATTTTCAAC 59.260 47.619 0.00 0.00 41.55 3.18
6088 6385 1.468520 GCAGCTCCGCTATTTTCAACA 59.531 47.619 0.00 0.00 36.40 3.33
6089 6386 2.476854 GCAGCTCCGCTATTTTCAACAG 60.477 50.000 0.00 0.00 36.40 3.16
6090 6387 2.744202 CAGCTCCGCTATTTTCAACAGT 59.256 45.455 0.00 0.00 36.40 3.55
6091 6388 3.932710 CAGCTCCGCTATTTTCAACAGTA 59.067 43.478 0.00 0.00 36.40 2.74
6092 6389 4.391830 CAGCTCCGCTATTTTCAACAGTAA 59.608 41.667 0.00 0.00 36.40 2.24
6093 6390 4.392138 AGCTCCGCTATTTTCAACAGTAAC 59.608 41.667 0.00 0.00 36.99 2.50
6094 6391 4.392138 GCTCCGCTATTTTCAACAGTAACT 59.608 41.667 0.00 0.00 0.00 2.24
6095 6392 5.446073 GCTCCGCTATTTTCAACAGTAACTC 60.446 44.000 0.00 0.00 0.00 3.01
6096 6393 4.933400 TCCGCTATTTTCAACAGTAACTCC 59.067 41.667 0.00 0.00 0.00 3.85
6097 6394 4.693566 CCGCTATTTTCAACAGTAACTCCA 59.306 41.667 0.00 0.00 0.00 3.86
6098 6395 5.390567 CCGCTATTTTCAACAGTAACTCCAC 60.391 44.000 0.00 0.00 0.00 4.02
6099 6396 5.390567 CGCTATTTTCAACAGTAACTCCACC 60.391 44.000 0.00 0.00 0.00 4.61
6100 6397 5.106277 GCTATTTTCAACAGTAACTCCACCC 60.106 44.000 0.00 0.00 0.00 4.61
6101 6398 2.536761 TTCAACAGTAACTCCACCCG 57.463 50.000 0.00 0.00 0.00 5.28
6102 6399 0.034337 TCAACAGTAACTCCACCCGC 59.966 55.000 0.00 0.00 0.00 6.13
6103 6400 0.953960 CAACAGTAACTCCACCCGCC 60.954 60.000 0.00 0.00 0.00 6.13
6104 6401 2.120737 AACAGTAACTCCACCCGCCC 62.121 60.000 0.00 0.00 0.00 6.13
6105 6402 2.122056 AGTAACTCCACCCGCCCT 59.878 61.111 0.00 0.00 0.00 5.19
6106 6403 0.974010 CAGTAACTCCACCCGCCCTA 60.974 60.000 0.00 0.00 0.00 3.53
6107 6404 0.686769 AGTAACTCCACCCGCCCTAG 60.687 60.000 0.00 0.00 0.00 3.02
6108 6405 1.382146 TAACTCCACCCGCCCTAGG 60.382 63.158 0.06 0.06 0.00 3.02
6109 6406 1.877672 TAACTCCACCCGCCCTAGGA 61.878 60.000 11.48 0.00 0.00 2.94
6110 6407 2.840102 CTCCACCCGCCCTAGGAG 60.840 72.222 11.48 3.57 41.43 3.69
6111 6408 3.680196 TCCACCCGCCCTAGGAGT 61.680 66.667 11.48 0.00 0.00 3.85
6112 6409 3.470888 CCACCCGCCCTAGGAGTG 61.471 72.222 11.48 11.76 34.43 3.51
6113 6410 3.470888 CACCCGCCCTAGGAGTGG 61.471 72.222 11.48 15.83 32.47 4.00
6114 6411 3.680196 ACCCGCCCTAGGAGTGGA 61.680 66.667 23.90 0.00 37.02 4.02
6115 6412 2.840102 CCCGCCCTAGGAGTGGAG 60.840 72.222 23.90 13.95 37.02 3.86
6116 6413 2.042843 CCGCCCTAGGAGTGGAGT 60.043 66.667 19.71 0.00 37.02 3.85
6117 6414 1.686110 CCGCCCTAGGAGTGGAGTT 60.686 63.158 19.71 0.00 37.02 3.01
6118 6415 1.517832 CGCCCTAGGAGTGGAGTTG 59.482 63.158 11.48 0.00 0.00 3.16
6119 6416 1.258445 CGCCCTAGGAGTGGAGTTGT 61.258 60.000 11.48 0.00 0.00 3.32
6120 6417 0.250513 GCCCTAGGAGTGGAGTTGTG 59.749 60.000 11.48 0.00 0.00 3.33
6121 6418 0.905357 CCCTAGGAGTGGAGTTGTGG 59.095 60.000 11.48 0.00 0.00 4.17
6122 6419 1.552486 CCCTAGGAGTGGAGTTGTGGA 60.552 57.143 11.48 0.00 0.00 4.02
6123 6420 1.827969 CCTAGGAGTGGAGTTGTGGAG 59.172 57.143 1.05 0.00 0.00 3.86
6124 6421 1.205893 CTAGGAGTGGAGTTGTGGAGC 59.794 57.143 0.00 0.00 0.00 4.70
6125 6422 1.374758 GGAGTGGAGTTGTGGAGCG 60.375 63.158 0.00 0.00 0.00 5.03
6126 6423 1.374758 GAGTGGAGTTGTGGAGCGG 60.375 63.158 0.00 0.00 0.00 5.52
6127 6424 1.816863 GAGTGGAGTTGTGGAGCGGA 61.817 60.000 0.00 0.00 0.00 5.54
6128 6425 1.374758 GTGGAGTTGTGGAGCGGAG 60.375 63.158 0.00 0.00 0.00 4.63
6129 6426 2.266055 GGAGTTGTGGAGCGGAGG 59.734 66.667 0.00 0.00 0.00 4.30
6130 6427 2.584391 GGAGTTGTGGAGCGGAGGT 61.584 63.158 0.00 0.00 46.54 3.85
6142 6439 3.300013 GGAGGTCCTCCGAACAGG 58.700 66.667 22.53 0.00 41.08 4.00
6143 6440 2.359967 GGAGGTCCTCCGAACAGGG 61.360 68.421 22.53 0.00 41.08 4.45
6144 6441 3.003763 AGGTCCTCCGAACAGGGC 61.004 66.667 0.00 0.00 41.52 5.19
6146 6443 3.003763 GTCCTCCGAACAGGGCCT 61.004 66.667 0.00 0.00 41.52 5.19
6147 6444 1.684734 GTCCTCCGAACAGGGCCTA 60.685 63.158 5.28 0.00 41.52 3.93
6148 6445 1.079621 TCCTCCGAACAGGGCCTAA 59.920 57.895 5.28 0.00 41.52 2.69
6149 6446 0.326238 TCCTCCGAACAGGGCCTAAT 60.326 55.000 5.28 0.00 41.52 1.73
6150 6447 1.062734 TCCTCCGAACAGGGCCTAATA 60.063 52.381 5.28 0.00 41.52 0.98
6151 6448 1.978580 CCTCCGAACAGGGCCTAATAT 59.021 52.381 5.28 0.00 41.52 1.28
6152 6449 2.372172 CCTCCGAACAGGGCCTAATATT 59.628 50.000 5.28 0.00 41.52 1.28
6153 6450 3.581332 CCTCCGAACAGGGCCTAATATTA 59.419 47.826 5.28 0.00 41.52 0.98
6154 6451 4.322801 CCTCCGAACAGGGCCTAATATTAG 60.323 50.000 5.28 14.56 41.52 1.73
6155 6452 4.228824 TCCGAACAGGGCCTAATATTAGT 58.771 43.478 18.91 0.00 41.52 2.24
6156 6453 4.039973 TCCGAACAGGGCCTAATATTAGTG 59.960 45.833 18.91 13.40 41.52 2.74
6157 6454 3.746492 CGAACAGGGCCTAATATTAGTGC 59.254 47.826 18.91 19.30 0.00 4.40
6158 6455 4.503296 CGAACAGGGCCTAATATTAGTGCT 60.503 45.833 23.57 9.73 31.73 4.40
6183 6480 8.700722 TTAATTAGCGTCGTATAAACCTGAAA 57.299 30.769 0.00 0.00 0.00 2.69
6214 6511 4.150897 ACTGGCTAACAACTCAAGTGAA 57.849 40.909 0.00 0.00 0.00 3.18
6297 6595 2.429250 CGGGTCAAAAGTGGAAAAGGTT 59.571 45.455 0.00 0.00 0.00 3.50
6311 6609 4.929211 GGAAAAGGTTTATGTTCATGCACC 59.071 41.667 0.00 6.96 0.00 5.01
6363 6665 1.244816 GCTGGCCGGTTTTACTTCTT 58.755 50.000 14.55 0.00 0.00 2.52
6367 6669 2.882137 TGGCCGGTTTTACTTCTTTCTG 59.118 45.455 1.90 0.00 0.00 3.02
6368 6670 3.143728 GGCCGGTTTTACTTCTTTCTGA 58.856 45.455 1.90 0.00 0.00 3.27
6369 6671 3.756963 GGCCGGTTTTACTTCTTTCTGAT 59.243 43.478 1.90 0.00 0.00 2.90
6370 6672 4.379499 GGCCGGTTTTACTTCTTTCTGATG 60.379 45.833 1.90 0.00 0.00 3.07
6371 6673 4.454504 GCCGGTTTTACTTCTTTCTGATGA 59.545 41.667 1.90 0.00 0.00 2.92
6400 6707 2.707849 CGGGGTAGCTAGCACGTGT 61.708 63.158 33.54 6.65 44.72 4.49
6407 6714 1.082104 GCTAGCACGTGTTGTTGCC 60.082 57.895 18.38 0.00 0.00 4.52
6423 6730 5.249780 TGTTGCCTATGTTCCTCCTTTAA 57.750 39.130 0.00 0.00 0.00 1.52
6431 6738 2.438763 TGTTCCTCCTTTAACCCGTCAA 59.561 45.455 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.373495 GGAGATAAACCGGACAAAAGTAACAT 59.627 38.462 9.46 0.00 0.00 2.71
61 62 3.567585 TGTTGAGCATTTTGAATCGGACA 59.432 39.130 0.00 0.00 0.00 4.02
65 66 2.910482 CGGTGTTGAGCATTTTGAATCG 59.090 45.455 0.00 0.00 0.00 3.34
106 107 9.527157 TTTTTATCAATGTGATTAGGACCTTCA 57.473 29.630 0.00 0.00 38.26 3.02
156 158 1.329292 TGTTCTCAACAAAAGGCGTCG 59.671 47.619 0.00 0.00 38.72 5.12
157 159 3.003275 TCATGTTCTCAACAAAAGGCGTC 59.997 43.478 0.00 0.00 45.86 5.19
160 162 4.516698 TCTCTCATGTTCTCAACAAAAGGC 59.483 41.667 0.00 0.00 45.86 4.35
192 194 4.023107 GTGCCAAGTTTAGAACCTCTTTCC 60.023 45.833 0.00 0.00 34.32 3.13
193 195 4.578928 TGTGCCAAGTTTAGAACCTCTTTC 59.421 41.667 0.00 0.00 33.95 2.62
195 197 4.164843 TGTGCCAAGTTTAGAACCTCTT 57.835 40.909 0.00 0.00 0.00 2.85
196 198 3.857157 TGTGCCAAGTTTAGAACCTCT 57.143 42.857 0.00 0.00 0.00 3.69
197 199 4.911514 TTTGTGCCAAGTTTAGAACCTC 57.088 40.909 0.00 0.00 0.00 3.85
198 200 4.892934 TCATTTGTGCCAAGTTTAGAACCT 59.107 37.500 0.00 0.00 0.00 3.50
199 201 5.195001 TCATTTGTGCCAAGTTTAGAACC 57.805 39.130 0.00 0.00 0.00 3.62
202 204 5.334802 CGTGATCATTTGTGCCAAGTTTAGA 60.335 40.000 0.00 0.00 0.00 2.10
217 219 9.912634 ATAAATTCAAAGAAACACGTGATCATT 57.087 25.926 25.01 15.47 0.00 2.57
236 238 4.640647 AGCCCGGAAGACTGAAATAAATTC 59.359 41.667 0.73 0.00 38.60 2.17
240 242 2.838202 AGAGCCCGGAAGACTGAAATAA 59.162 45.455 0.73 0.00 0.00 1.40
252 254 2.168521 CACTGAAAGAATAGAGCCCGGA 59.831 50.000 0.73 0.00 37.43 5.14
253 255 2.555199 CACTGAAAGAATAGAGCCCGG 58.445 52.381 0.00 0.00 37.43 5.73
255 257 3.636153 ACCACTGAAAGAATAGAGCCC 57.364 47.619 0.00 0.00 37.43 5.19
259 261 7.419057 GGGACATGATACCACTGAAAGAATAGA 60.419 40.741 0.00 0.00 37.43 1.98
264 266 3.199946 GGGGACATGATACCACTGAAAGA 59.800 47.826 0.00 0.00 37.43 2.52
266 268 2.916269 TGGGGACATGATACCACTGAAA 59.084 45.455 0.00 0.00 33.40 2.69
280 282 7.989326 TCATAGATCATGGTCGATGGGGACA 62.989 48.000 23.73 6.33 39.10 4.02
293 295 6.445475 ACTGATCAAGTCGTCATAGATCATG 58.555 40.000 0.00 0.00 42.72 3.07
295 297 6.456795 AACTGATCAAGTCGTCATAGATCA 57.543 37.500 0.00 0.00 41.80 2.92
303 309 7.352719 ACATCTTAAAACTGATCAAGTCGTC 57.647 36.000 0.00 0.00 38.56 4.20
304 310 7.331193 GGTACATCTTAAAACTGATCAAGTCGT 59.669 37.037 0.00 0.00 38.56 4.34
311 317 8.547967 TGAGTTGGTACATCTTAAAACTGATC 57.452 34.615 0.00 0.00 38.66 2.92
312 318 7.119846 GCTGAGTTGGTACATCTTAAAACTGAT 59.880 37.037 0.00 0.00 38.66 2.90
316 322 5.472137 TGGCTGAGTTGGTACATCTTAAAAC 59.528 40.000 0.00 0.00 38.66 2.43
320 326 5.428253 GAATGGCTGAGTTGGTACATCTTA 58.572 41.667 0.00 0.00 38.66 2.10
326 332 2.380084 TCGAATGGCTGAGTTGGTAC 57.620 50.000 0.00 0.00 0.00 3.34
331 337 1.072331 ACACCTTCGAATGGCTGAGTT 59.928 47.619 0.00 0.00 0.00 3.01
335 341 2.154462 AGAAACACCTTCGAATGGCTG 58.846 47.619 0.00 6.52 39.22 4.85
336 342 2.554032 CAAGAAACACCTTCGAATGGCT 59.446 45.455 0.00 0.00 39.22 4.75
413 451 3.063084 GCCTCACGACGTCCCTCT 61.063 66.667 10.58 0.00 0.00 3.69
418 456 2.504244 CTTCGGCCTCACGACGTC 60.504 66.667 5.18 5.18 43.37 4.34
445 483 1.571919 CGATCTGGACCCGAATGAAC 58.428 55.000 0.00 0.00 0.00 3.18
497 539 0.981277 GGAAGAGGGGGACGAATGGA 60.981 60.000 0.00 0.00 0.00 3.41
499 541 1.144057 CGGAAGAGGGGGACGAATG 59.856 63.158 0.00 0.00 0.00 2.67
500 542 1.305887 ACGGAAGAGGGGGACGAAT 60.306 57.895 0.00 0.00 0.00 3.34
501 543 2.118951 ACGGAAGAGGGGGACGAA 59.881 61.111 0.00 0.00 0.00 3.85
502 544 2.678934 CACGGAAGAGGGGGACGA 60.679 66.667 0.00 0.00 0.00 4.20
503 545 4.452733 GCACGGAAGAGGGGGACG 62.453 72.222 0.00 0.00 0.00 4.79
504 546 4.452733 CGCACGGAAGAGGGGGAC 62.453 72.222 0.00 0.00 0.00 4.46
622 675 0.322008 GGGCCTCTTCTGGTGTCTTG 60.322 60.000 0.84 0.00 0.00 3.02
979 1032 4.208686 GGCAGGGCGAGGTACGAG 62.209 72.222 0.00 0.00 45.77 4.18
989 1042 2.363406 ATTTGAGCAGGGCAGGGC 60.363 61.111 0.00 0.00 0.00 5.19
992 1045 0.529378 GGTTGATTTGAGCAGGGCAG 59.471 55.000 0.00 0.00 0.00 4.85
993 1046 1.243342 CGGTTGATTTGAGCAGGGCA 61.243 55.000 0.00 0.00 0.00 5.36
1013 1066 1.915769 CAGGGGGATCGGGGATCTC 60.916 68.421 5.67 1.44 38.71 2.75
1014 1067 2.205462 CAGGGGGATCGGGGATCT 59.795 66.667 5.67 0.00 38.91 2.75
1015 1068 2.122369 ACAGGGGGATCGGGGATC 60.122 66.667 0.00 0.00 38.25 3.36
1016 1069 2.122369 GACAGGGGGATCGGGGAT 60.122 66.667 0.00 0.00 0.00 3.85
1017 1070 4.853142 CGACAGGGGGATCGGGGA 62.853 72.222 0.00 0.00 34.67 4.81
1019 1072 0.830444 TAATCGACAGGGGGATCGGG 60.830 60.000 0.00 0.00 38.86 5.14
1020 1073 0.603569 CTAATCGACAGGGGGATCGG 59.396 60.000 0.00 0.00 38.86 4.18
1021 1074 1.542030 CTCTAATCGACAGGGGGATCG 59.458 57.143 0.00 0.00 39.72 3.69
1022 1075 1.273886 GCTCTAATCGACAGGGGGATC 59.726 57.143 0.00 0.00 0.00 3.36
1023 1076 1.343069 GCTCTAATCGACAGGGGGAT 58.657 55.000 0.00 0.00 0.00 3.85
1024 1077 1.107538 CGCTCTAATCGACAGGGGGA 61.108 60.000 6.91 0.00 0.00 4.81
1025 1078 1.107538 TCGCTCTAATCGACAGGGGG 61.108 60.000 6.49 6.49 0.00 5.40
1177 1230 0.736325 GCGTGTCAGCTACGATTGGT 60.736 55.000 11.58 0.00 43.82 3.67
1407 1466 4.161295 CCATCTTCTCCGGCGGCA 62.161 66.667 23.83 7.27 0.00 5.69
1497 1559 3.499050 CAGACCATGCAGCTGAGC 58.501 61.111 20.43 2.81 0.00 4.26
1547 1609 0.107654 GAACTTATGGGAGCACGGCT 60.108 55.000 0.00 0.00 43.88 5.52
1557 1619 1.806542 ACGCACTTGCAGAACTTATGG 59.193 47.619 1.48 0.00 42.21 2.74
1675 1739 2.750888 CGGGCAGTCCTTAAAGCGC 61.751 63.158 0.00 0.00 36.69 5.92
1804 1868 4.641645 CCACCCGCTGCTTGGTCA 62.642 66.667 7.64 0.00 30.70 4.02
1906 1970 9.088987 AGGTTAAAGAGCTCAAAATTGGAATTA 57.911 29.630 17.77 0.00 0.00 1.40
1998 2062 6.368779 AACAAGTTAGAGGCACCACTATAA 57.631 37.500 0.00 0.00 0.00 0.98
2019 2083 1.756430 GAAAGGCCTGGAGATGGAAC 58.244 55.000 5.69 0.00 0.00 3.62
2022 2086 1.821332 GCGAAAGGCCTGGAGATGG 60.821 63.158 5.69 0.00 34.80 3.51
2023 2087 2.176273 CGCGAAAGGCCTGGAGATG 61.176 63.158 5.69 0.00 38.94 2.90
2024 2088 2.187946 CGCGAAAGGCCTGGAGAT 59.812 61.111 5.69 0.00 38.94 2.75
2034 2098 1.069973 TCAATGTTCTGTGCGCGAAAG 60.070 47.619 12.10 3.07 0.00 2.62
2058 2122 0.109272 TACTGAGCCTCGACTTTGCG 60.109 55.000 0.00 0.00 0.00 4.85
2166 2230 0.550914 GGTCATACCAGCAATCCCCA 59.449 55.000 0.00 0.00 38.42 4.96
2203 2267 3.141767 AGTGAAAACACTAGGAAGGGC 57.858 47.619 0.00 0.00 32.97 5.19
2223 2287 6.322712 GGTGGTTTATTTCATAGGTTGCCATA 59.677 38.462 0.00 0.00 0.00 2.74
2246 2310 1.358051 AACCCCAGTTTTCTCCCGGT 61.358 55.000 0.00 0.00 29.61 5.28
2274 2338 3.146066 ACATTCTAGCGGCACAGAAAAA 58.854 40.909 17.37 0.49 34.61 1.94
2275 2339 2.778299 ACATTCTAGCGGCACAGAAAA 58.222 42.857 17.37 1.09 34.61 2.29
2276 2340 2.472695 ACATTCTAGCGGCACAGAAA 57.527 45.000 17.37 5.49 34.61 2.52
2277 2341 2.472695 AACATTCTAGCGGCACAGAA 57.527 45.000 16.23 16.23 35.37 3.02
2293 2358 6.177610 CCTACCAGCCATTTAGTAGAAAACA 58.822 40.000 0.00 0.00 35.29 2.83
2294 2359 6.178324 ACCTACCAGCCATTTAGTAGAAAAC 58.822 40.000 0.00 0.00 35.29 2.43
2351 2416 7.589958 ACACAAAGTGTTGGACCATTATTTA 57.410 32.000 0.00 0.00 45.08 1.40
2427 2623 8.757982 AAACTATCAAGCAAGAATATCCACAT 57.242 30.769 0.00 0.00 0.00 3.21
2489 2685 8.803235 GTGGACCTCATTTTAATAAAGAGGTTT 58.197 33.333 20.61 6.18 43.77 3.27
2649 2845 7.495606 TGATATAAGGCAAACTACACTGTCATG 59.504 37.037 0.00 0.00 0.00 3.07
2701 2897 2.432510 AGTTGCTAGATCAGTGGCCTAC 59.567 50.000 3.32 0.00 0.00 3.18
2803 2999 5.788450 ACTTAGCTATGATGAGATTTCCCG 58.212 41.667 13.22 0.00 0.00 5.14
3025 3221 4.287067 AGGTCACCATGTCTCACTGTTATT 59.713 41.667 0.00 0.00 0.00 1.40
3033 3229 4.009675 GCAAATAAGGTCACCATGTCTCA 58.990 43.478 0.00 0.00 0.00 3.27
3040 3236 8.519526 CAACTAAATAAGCAAATAAGGTCACCA 58.480 33.333 0.00 0.00 0.00 4.17
3098 3294 2.212327 GTCCCGTGATGAGGACCAT 58.788 57.895 0.00 0.00 45.76 3.55
3180 3376 2.297033 GGGCAATTTTGACAGAAGCTCA 59.703 45.455 0.00 0.00 38.18 4.26
3192 3388 4.080072 TCAAGGTCCTTTTTGGGCAATTTT 60.080 37.500 0.00 0.00 43.75 1.82
3210 3406 7.042658 GCACTAAATTAGAATACGACCTCAAGG 60.043 40.741 7.06 0.00 42.17 3.61
3364 3560 2.612212 ACGGGCATAATAACTTCTTGCG 59.388 45.455 0.00 0.00 34.17 4.85
3526 3729 5.482878 TCCCTCCGTAAAGAAATGTAAGAGT 59.517 40.000 0.00 0.00 0.00 3.24
3646 3858 1.531365 TCCAGCAGTGGCCAAAAGG 60.531 57.895 7.24 5.75 44.60 3.11
3707 3919 7.469181 GCACTTGATTCCATTGTAATCCTAAGG 60.469 40.741 0.15 0.00 33.28 2.69
3846 4058 5.568620 AAAGACTTCAGATAACAGGTGGT 57.431 39.130 0.00 0.00 0.00 4.16
3891 4103 7.122650 CCATAAATGAACCCTGTATCTTTGTGT 59.877 37.037 0.00 0.00 0.00 3.72
3946 4158 7.964666 ATTTCCTATAGCTCTACTATGTCCC 57.035 40.000 0.00 0.00 41.83 4.46
4187 4401 7.066307 AGTTTTATTTTGCCAACTTCCTGAT 57.934 32.000 0.00 0.00 0.00 2.90
4330 4556 6.959639 AACTTCACCAACACTTGTATTGAT 57.040 33.333 0.00 0.00 0.00 2.57
4348 4574 5.224821 AGTAGGTACCAAGGACAAACTTC 57.775 43.478 15.94 0.00 0.00 3.01
4480 4712 4.511527 AGAGCATTCTCAATCAATCACGT 58.488 39.130 0.00 0.00 41.81 4.49
4763 4995 1.754803 AGGTTTCTATCGACATCCGCA 59.245 47.619 0.00 0.00 38.37 5.69
4787 5019 1.421485 GACAGCCGCATCTTCGTTG 59.579 57.895 0.00 0.00 0.00 4.10
4835 5067 6.506500 TCAGAATCAAGCTTCAATTTCTCC 57.493 37.500 0.00 0.00 0.00 3.71
4841 5073 5.312120 CTTGCTCAGAATCAAGCTTCAAT 57.688 39.130 0.00 0.00 39.31 2.57
4850 5082 1.836166 AGGCTAGCTTGCTCAGAATCA 59.164 47.619 19.45 0.00 0.00 2.57
4916 5148 4.383602 CCGGAACAACTTGCGCCG 62.384 66.667 4.18 13.34 39.72 6.46
4920 5152 0.240145 GTTAGGCCGGAACAACTTGC 59.760 55.000 5.05 0.00 0.00 4.01
4923 5155 0.763035 ACAGTTAGGCCGGAACAACT 59.237 50.000 21.29 7.46 0.00 3.16
5209 5442 6.091718 ACAGTGAAAAGAACTCTCCTAGAC 57.908 41.667 0.00 0.00 0.00 2.59
5224 5457 2.161410 GCATGTATTGGCGACAGTGAAA 59.839 45.455 0.00 0.00 44.54 2.69
5259 5492 0.248843 GAGAAGACCACAGGGAGCTG 59.751 60.000 0.00 0.00 38.05 4.24
5315 5549 2.386661 ACATACAACAGGGAGCTTCG 57.613 50.000 0.00 0.00 0.00 3.79
5330 5564 1.137479 GGGTCGGTCGGATTCAACATA 59.863 52.381 0.00 0.00 0.00 2.29
5358 5592 7.482743 GCAGTTCTATGTGTGTTATTGTTGATG 59.517 37.037 0.00 0.00 0.00 3.07
5506 5741 2.478031 CCAGTCCGTCACAAGATACGAG 60.478 54.545 0.00 0.00 41.55 4.18
5522 5757 5.614887 GCGTCTTGTCAATTAAAGACCAGTC 60.615 44.000 16.34 5.02 46.23 3.51
5525 5760 4.385825 AGCGTCTTGTCAATTAAAGACCA 58.614 39.130 16.34 0.00 46.23 4.02
5583 5818 3.600388 CTTTTATTCTCCACGAGTGCCT 58.400 45.455 0.00 0.00 0.00 4.75
5604 5839 2.934553 GACCATAGCACGTTTTCCTACC 59.065 50.000 0.00 0.00 0.00 3.18
5651 5886 2.995466 TTATGCAAGCAACTCACAGC 57.005 45.000 0.00 0.00 0.00 4.40
5662 5897 7.161404 TGCTACCAGTCCTAATATTATGCAAG 58.839 38.462 0.00 0.00 0.00 4.01
5697 5932 8.407064 GTTTAGAGATTCTCTTCCTGATTACGA 58.593 37.037 20.81 0.00 41.50 3.43
5698 5933 8.410141 AGTTTAGAGATTCTCTTCCTGATTACG 58.590 37.037 20.81 0.00 41.50 3.18
5699 5934 9.528018 CAGTTTAGAGATTCTCTTCCTGATTAC 57.472 37.037 20.81 8.23 41.50 1.89
5741 5982 1.149101 ATGAACACCCTCAACACCCT 58.851 50.000 0.00 0.00 0.00 4.34
5743 5984 2.936498 CGATATGAACACCCTCAACACC 59.064 50.000 0.00 0.00 0.00 4.16
5848 6102 5.412904 GGTCTCCAACAAGAAGATTAACCAG 59.587 44.000 0.00 0.00 0.00 4.00
5863 6117 0.036858 GCAGGTCAGAGGTCTCCAAC 60.037 60.000 0.00 0.00 0.00 3.77
5939 6206 1.202256 CGAGAACTACTGGCGCATACA 60.202 52.381 10.83 0.00 0.00 2.29
5988 6255 4.096382 TGGAAAACAGAGCACTTTGTTCTC 59.904 41.667 6.99 3.40 35.71 2.87
6003 6300 3.075283 TCTTATTCTGCCCCTGGAAAACA 59.925 43.478 0.00 0.00 0.00 2.83
6004 6301 3.444034 GTCTTATTCTGCCCCTGGAAAAC 59.556 47.826 0.00 0.00 0.00 2.43
6005 6302 3.563479 GGTCTTATTCTGCCCCTGGAAAA 60.563 47.826 0.00 0.00 0.00 2.29
6006 6303 2.025321 GGTCTTATTCTGCCCCTGGAAA 60.025 50.000 0.00 0.00 0.00 3.13
6007 6304 1.564348 GGTCTTATTCTGCCCCTGGAA 59.436 52.381 0.00 0.00 0.00 3.53
6008 6305 1.213296 GGTCTTATTCTGCCCCTGGA 58.787 55.000 0.00 0.00 0.00 3.86
6009 6306 0.183731 GGGTCTTATTCTGCCCCTGG 59.816 60.000 0.00 0.00 35.18 4.45
6010 6307 1.216990 AGGGTCTTATTCTGCCCCTG 58.783 55.000 0.00 0.00 44.09 4.45
6011 6308 1.216990 CAGGGTCTTATTCTGCCCCT 58.783 55.000 0.00 0.00 46.76 4.79
6012 6309 0.919710 ACAGGGTCTTATTCTGCCCC 59.080 55.000 0.00 0.00 41.99 5.80
6013 6310 2.644676 GAACAGGGTCTTATTCTGCCC 58.355 52.381 0.00 0.00 41.36 5.36
6014 6311 2.644676 GGAACAGGGTCTTATTCTGCC 58.355 52.381 0.00 0.00 32.19 4.85
6015 6312 2.280628 CGGAACAGGGTCTTATTCTGC 58.719 52.381 0.00 0.00 32.19 4.26
6016 6313 2.280628 GCGGAACAGGGTCTTATTCTG 58.719 52.381 0.00 0.00 34.91 3.02
6017 6314 1.134788 CGCGGAACAGGGTCTTATTCT 60.135 52.381 0.00 0.00 0.00 2.40
6018 6315 1.134907 TCGCGGAACAGGGTCTTATTC 60.135 52.381 6.13 0.00 0.00 1.75
6019 6316 0.899720 TCGCGGAACAGGGTCTTATT 59.100 50.000 6.13 0.00 0.00 1.40
6020 6317 0.899720 TTCGCGGAACAGGGTCTTAT 59.100 50.000 6.13 0.00 0.00 1.73
6021 6318 0.680618 TTTCGCGGAACAGGGTCTTA 59.319 50.000 6.13 0.00 0.00 2.10
6022 6319 0.036306 ATTTCGCGGAACAGGGTCTT 59.964 50.000 0.00 0.00 0.00 3.01
6023 6320 0.391263 GATTTCGCGGAACAGGGTCT 60.391 55.000 0.00 0.00 0.00 3.85
6024 6321 1.366854 GGATTTCGCGGAACAGGGTC 61.367 60.000 0.00 0.00 0.00 4.46
6025 6322 1.376812 GGATTTCGCGGAACAGGGT 60.377 57.895 0.00 0.00 0.00 4.34
6026 6323 2.112815 GGGATTTCGCGGAACAGGG 61.113 63.158 0.00 0.00 0.00 4.45
6027 6324 2.112815 GGGGATTTCGCGGAACAGG 61.113 63.158 0.00 0.00 0.00 4.00
6028 6325 2.461110 CGGGGATTTCGCGGAACAG 61.461 63.158 0.00 0.00 46.25 3.16
6029 6326 2.435234 CGGGGATTTCGCGGAACA 60.435 61.111 0.00 0.00 46.25 3.18
6035 6332 2.897350 CAGCTCCGGGGATTTCGC 60.897 66.667 4.80 0.00 0.00 4.70
6036 6333 2.897350 GCAGCTCCGGGGATTTCG 60.897 66.667 4.80 0.00 0.00 3.46
6037 6334 2.897350 CGCAGCTCCGGGGATTTC 60.897 66.667 4.80 0.00 0.00 2.17
6038 6335 4.489771 CCGCAGCTCCGGGGATTT 62.490 66.667 8.68 0.00 44.46 2.17
6047 6344 3.612247 TTTCCTGGCTCCGCAGCTC 62.612 63.158 0.00 0.00 46.03 4.09
6048 6345 3.640407 TTTCCTGGCTCCGCAGCT 61.640 61.111 0.00 0.00 46.03 4.24
6049 6346 3.435186 GTTTCCTGGCTCCGCAGC 61.435 66.667 0.00 0.00 46.06 5.25
6050 6347 2.032528 TGTTTCCTGGCTCCGCAG 59.967 61.111 0.00 0.00 0.00 5.18
6051 6348 2.032528 CTGTTTCCTGGCTCCGCA 59.967 61.111 0.00 0.00 0.00 5.69
6052 6349 3.435186 GCTGTTTCCTGGCTCCGC 61.435 66.667 0.00 0.00 0.00 5.54
6053 6350 2.032528 TGCTGTTTCCTGGCTCCG 59.967 61.111 0.00 0.00 0.00 4.63
6054 6351 2.338785 GCTGCTGTTTCCTGGCTCC 61.339 63.158 0.00 0.00 0.00 4.70
6055 6352 1.303155 AGCTGCTGTTTCCTGGCTC 60.303 57.895 0.00 0.00 0.00 4.70
6056 6353 1.303155 GAGCTGCTGTTTCCTGGCT 60.303 57.895 7.01 0.00 0.00 4.75
6057 6354 2.338785 GGAGCTGCTGTTTCCTGGC 61.339 63.158 7.01 0.00 0.00 4.85
6058 6355 2.037136 CGGAGCTGCTGTTTCCTGG 61.037 63.158 7.01 0.00 0.00 4.45
6059 6356 3.571119 CGGAGCTGCTGTTTCCTG 58.429 61.111 7.01 0.00 0.00 3.86
6072 6369 5.063564 GGAGTTACTGTTGAAAATAGCGGAG 59.936 44.000 0.00 0.00 38.80 4.63
6073 6370 4.933400 GGAGTTACTGTTGAAAATAGCGGA 59.067 41.667 0.00 0.00 38.80 5.54
6074 6371 4.693566 TGGAGTTACTGTTGAAAATAGCGG 59.306 41.667 0.00 0.00 38.80 5.52
6075 6372 5.390567 GGTGGAGTTACTGTTGAAAATAGCG 60.391 44.000 0.00 0.00 38.80 4.26
6076 6373 5.106277 GGGTGGAGTTACTGTTGAAAATAGC 60.106 44.000 0.00 0.00 38.80 2.97
6077 6374 5.121768 CGGGTGGAGTTACTGTTGAAAATAG 59.878 44.000 0.00 0.00 41.28 1.73
6078 6375 4.998672 CGGGTGGAGTTACTGTTGAAAATA 59.001 41.667 0.00 0.00 0.00 1.40
6079 6376 3.818773 CGGGTGGAGTTACTGTTGAAAAT 59.181 43.478 0.00 0.00 0.00 1.82
6080 6377 3.207778 CGGGTGGAGTTACTGTTGAAAA 58.792 45.455 0.00 0.00 0.00 2.29
6081 6378 2.841215 CGGGTGGAGTTACTGTTGAAA 58.159 47.619 0.00 0.00 0.00 2.69
6082 6379 1.541670 GCGGGTGGAGTTACTGTTGAA 60.542 52.381 0.00 0.00 0.00 2.69
6083 6380 0.034337 GCGGGTGGAGTTACTGTTGA 59.966 55.000 0.00 0.00 0.00 3.18
6084 6381 0.953960 GGCGGGTGGAGTTACTGTTG 60.954 60.000 0.00 0.00 0.00 3.33
6085 6382 1.373812 GGCGGGTGGAGTTACTGTT 59.626 57.895 0.00 0.00 0.00 3.16
6086 6383 2.590114 GGGCGGGTGGAGTTACTGT 61.590 63.158 0.00 0.00 0.00 3.55
6087 6384 0.974010 TAGGGCGGGTGGAGTTACTG 60.974 60.000 0.00 0.00 0.00 2.74
6088 6385 0.686769 CTAGGGCGGGTGGAGTTACT 60.687 60.000 0.00 0.00 0.00 2.24
6089 6386 1.683418 CCTAGGGCGGGTGGAGTTAC 61.683 65.000 0.00 0.00 0.00 2.50
6090 6387 1.382146 CCTAGGGCGGGTGGAGTTA 60.382 63.158 0.00 0.00 0.00 2.24
6091 6388 2.687566 CCTAGGGCGGGTGGAGTT 60.688 66.667 0.00 0.00 0.00 3.01
6092 6389 3.680196 TCCTAGGGCGGGTGGAGT 61.680 66.667 9.46 0.00 0.00 3.85
6093 6390 2.840102 CTCCTAGGGCGGGTGGAG 60.840 72.222 9.46 0.00 39.87 3.86
6094 6391 3.680196 ACTCCTAGGGCGGGTGGA 61.680 66.667 9.46 0.00 0.00 4.02
6095 6392 3.470888 CACTCCTAGGGCGGGTGG 61.471 72.222 9.46 0.00 0.00 4.61
6096 6393 3.470888 CCACTCCTAGGGCGGGTG 61.471 72.222 9.46 12.43 0.00 4.61
6097 6394 3.680196 TCCACTCCTAGGGCGGGT 61.680 66.667 9.46 0.40 0.00 5.28
6098 6395 2.840102 CTCCACTCCTAGGGCGGG 60.840 72.222 9.46 8.02 0.00 6.13
6099 6396 1.686110 AACTCCACTCCTAGGGCGG 60.686 63.158 9.46 7.31 0.00 6.13
6100 6397 1.258445 ACAACTCCACTCCTAGGGCG 61.258 60.000 9.46 3.04 0.00 6.13
6101 6398 0.250513 CACAACTCCACTCCTAGGGC 59.749 60.000 9.46 0.00 0.00 5.19
6102 6399 0.905357 CCACAACTCCACTCCTAGGG 59.095 60.000 9.46 2.03 0.00 3.53
6103 6400 1.827969 CTCCACAACTCCACTCCTAGG 59.172 57.143 0.82 0.82 0.00 3.02
6104 6401 1.205893 GCTCCACAACTCCACTCCTAG 59.794 57.143 0.00 0.00 0.00 3.02
6105 6402 1.267121 GCTCCACAACTCCACTCCTA 58.733 55.000 0.00 0.00 0.00 2.94
6106 6403 1.821061 CGCTCCACAACTCCACTCCT 61.821 60.000 0.00 0.00 0.00 3.69
6107 6404 1.374758 CGCTCCACAACTCCACTCC 60.375 63.158 0.00 0.00 0.00 3.85
6108 6405 1.374758 CCGCTCCACAACTCCACTC 60.375 63.158 0.00 0.00 0.00 3.51
6109 6406 1.821061 CTCCGCTCCACAACTCCACT 61.821 60.000 0.00 0.00 0.00 4.00
6110 6407 1.374758 CTCCGCTCCACAACTCCAC 60.375 63.158 0.00 0.00 0.00 4.02
6111 6408 2.583441 CCTCCGCTCCACAACTCCA 61.583 63.158 0.00 0.00 0.00 3.86
6112 6409 2.266055 CCTCCGCTCCACAACTCC 59.734 66.667 0.00 0.00 0.00 3.85
6113 6410 1.079750 GACCTCCGCTCCACAACTC 60.080 63.158 0.00 0.00 0.00 3.01
6114 6411 2.584391 GGACCTCCGCTCCACAACT 61.584 63.158 0.00 0.00 0.00 3.16
6115 6412 2.047179 GGACCTCCGCTCCACAAC 60.047 66.667 0.00 0.00 0.00 3.32
6116 6413 2.203788 AGGACCTCCGCTCCACAA 60.204 61.111 0.00 0.00 42.08 3.33
6117 6414 2.680352 GAGGACCTCCGCTCCACA 60.680 66.667 10.74 0.00 42.08 4.17
6118 6415 3.462678 GGAGGACCTCCGCTCCAC 61.463 72.222 24.98 0.05 41.08 4.02
6125 6422 2.359967 CCCTGTTCGGAGGACCTCC 61.360 68.421 28.50 28.50 46.44 4.30
6126 6423 3.020237 GCCCTGTTCGGAGGACCTC 62.020 68.421 13.60 13.60 34.69 3.85
6127 6424 3.003763 GCCCTGTTCGGAGGACCT 61.004 66.667 0.00 0.00 34.69 3.85
6128 6425 4.097361 GGCCCTGTTCGGAGGACC 62.097 72.222 0.00 0.00 34.69 4.46
6129 6426 1.262640 TTAGGCCCTGTTCGGAGGAC 61.263 60.000 0.00 0.00 34.69 3.85
6130 6427 0.326238 ATTAGGCCCTGTTCGGAGGA 60.326 55.000 0.00 0.00 34.69 3.71
6131 6428 1.420430 TATTAGGCCCTGTTCGGAGG 58.580 55.000 0.00 0.00 33.16 4.30
6132 6429 3.771577 AATATTAGGCCCTGTTCGGAG 57.228 47.619 0.00 0.00 33.16 4.63
6133 6430 4.039973 CACTAATATTAGGCCCTGTTCGGA 59.960 45.833 23.24 0.00 35.08 4.55
6134 6431 4.315803 CACTAATATTAGGCCCTGTTCGG 58.684 47.826 23.24 0.00 35.08 4.30
6135 6432 3.746492 GCACTAATATTAGGCCCTGTTCG 59.254 47.826 23.24 0.00 35.08 3.95
6136 6433 4.974399 AGCACTAATATTAGGCCCTGTTC 58.026 43.478 23.24 4.57 35.08 3.18
6137 6434 5.388599 AAGCACTAATATTAGGCCCTGTT 57.611 39.130 23.24 9.98 35.08 3.16
6138 6435 6.509523 TTAAGCACTAATATTAGGCCCTGT 57.490 37.500 23.24 12.58 35.08 4.00
6139 6436 9.167311 CTAATTAAGCACTAATATTAGGCCCTG 57.833 37.037 23.24 14.51 35.08 4.45
6157 6454 7.919313 TCAGGTTTATACGACGCTAATTAAG 57.081 36.000 0.00 0.00 0.00 1.85
6158 6455 8.700722 TTTCAGGTTTATACGACGCTAATTAA 57.299 30.769 0.00 0.00 0.00 1.40
6177 6474 4.003648 AGCCAGTTCGATAGTTTTTCAGG 58.996 43.478 0.00 0.00 37.40 3.86
6183 6480 5.548406 AGTTGTTAGCCAGTTCGATAGTTT 58.452 37.500 0.00 0.00 37.40 2.66
6214 6511 4.022935 TCAAGCAATTTCATTCGAAGCTGT 60.023 37.500 3.35 0.00 32.29 4.40
6311 6609 7.096147 GGAGTTTTTCTAAGTGACTACTGTTCG 60.096 40.741 0.00 0.00 37.19 3.95
6363 6665 1.944709 CGCTGCCAATCATCATCAGAA 59.055 47.619 0.00 0.00 0.00 3.02
6367 6669 1.521450 CCCCGCTGCCAATCATCATC 61.521 60.000 0.00 0.00 0.00 2.92
6368 6670 1.529948 CCCCGCTGCCAATCATCAT 60.530 57.895 0.00 0.00 0.00 2.45
6369 6671 1.631071 TACCCCGCTGCCAATCATCA 61.631 55.000 0.00 0.00 0.00 3.07
6370 6672 0.886490 CTACCCCGCTGCCAATCATC 60.886 60.000 0.00 0.00 0.00 2.92
6371 6673 1.149174 CTACCCCGCTGCCAATCAT 59.851 57.895 0.00 0.00 0.00 2.45
6400 6707 3.806949 AAGGAGGAACATAGGCAACAA 57.193 42.857 0.00 0.00 41.41 2.83
6407 6714 4.081309 TGACGGGTTAAAGGAGGAACATAG 60.081 45.833 0.00 0.00 0.00 2.23
6423 6730 2.551504 GGGTTGATTACAGTTGACGGGT 60.552 50.000 0.00 0.00 0.00 5.28
6431 6738 1.633945 GTCCAGGGGGTTGATTACAGT 59.366 52.381 0.00 0.00 34.93 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.