Multiple sequence alignment - TraesCS3D01G078200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G078200 chr3D 100.000 3845 0 0 1 3845 38741330 38745174 0.000000e+00 7101
1 TraesCS3D01G078200 chr3B 95.968 2654 97 7 1200 3845 61553338 61555989 0.000000e+00 4300
2 TraesCS3D01G078200 chr3B 82.927 123 16 3 947 1069 61553106 61553223 5.250000e-19 106
3 TraesCS3D01G078200 chr3A 95.326 2653 104 8 1200 3845 49974106 49976745 0.000000e+00 4194
4 TraesCS3D01G078200 chr3A 90.000 830 63 11 1 811 440615994 440615166 0.000000e+00 1055
5 TraesCS3D01G078200 chr3A 83.051 118 16 2 952 1069 49973881 49973994 1.890000e-18 104
6 TraesCS3D01G078200 chr4D 91.515 825 51 9 1 808 8822791 8821969 0.000000e+00 1118
7 TraesCS3D01G078200 chr6B 91.363 822 53 2 2 806 181070553 181071373 0.000000e+00 1109
8 TraesCS3D01G078200 chr4B 90.591 829 59 3 1 810 233485258 233484430 0.000000e+00 1081
9 TraesCS3D01G078200 chr4B 86.335 322 26 8 501 805 34890298 34889978 6.160000e-88 335
10 TraesCS3D01G078200 chr4B 96.241 133 5 0 3713 3845 71555624 71555492 6.470000e-53 219
11 TraesCS3D01G078200 chr4B 93.233 133 9 0 3713 3845 623930274 623930142 3.030000e-46 196
12 TraesCS3D01G078200 chr2D 91.622 752 41 7 75 808 522904501 522905248 0.000000e+00 1020
13 TraesCS3D01G078200 chr2A 88.970 825 72 9 1 807 761484701 761485524 0.000000e+00 1002
14 TraesCS3D01G078200 chr2A 88.443 822 77 4 2 806 605363997 605364817 0.000000e+00 976
15 TraesCS3D01G078200 chr7B 88.029 827 79 9 1 809 619584239 619585063 0.000000e+00 961
16 TraesCS3D01G078200 chr2B 87.666 827 78 14 1 807 342229825 342229003 0.000000e+00 941
17 TraesCS3D01G078200 chr2B 96.241 133 5 0 3713 3845 741894612 741894744 6.470000e-53 219
18 TraesCS3D01G078200 chr1D 92.067 479 19 6 348 807 475199056 475199534 0.000000e+00 656
19 TraesCS3D01G078200 chr7D 90.690 290 14 6 3560 3845 14801971 14801691 1.300000e-99 374
20 TraesCS3D01G078200 chrUn 96.241 133 5 0 3713 3845 34721658 34721790 6.470000e-53 219
21 TraesCS3D01G078200 chr1B 95.489 133 6 0 3713 3845 538504073 538504205 3.010000e-51 213


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G078200 chr3D 38741330 38745174 3844 False 7101 7101 100.0000 1 3845 1 chr3D.!!$F1 3844
1 TraesCS3D01G078200 chr3B 61553106 61555989 2883 False 2203 4300 89.4475 947 3845 2 chr3B.!!$F1 2898
2 TraesCS3D01G078200 chr3A 49973881 49976745 2864 False 2149 4194 89.1885 952 3845 2 chr3A.!!$F1 2893
3 TraesCS3D01G078200 chr3A 440615166 440615994 828 True 1055 1055 90.0000 1 811 1 chr3A.!!$R1 810
4 TraesCS3D01G078200 chr4D 8821969 8822791 822 True 1118 1118 91.5150 1 808 1 chr4D.!!$R1 807
5 TraesCS3D01G078200 chr6B 181070553 181071373 820 False 1109 1109 91.3630 2 806 1 chr6B.!!$F1 804
6 TraesCS3D01G078200 chr4B 233484430 233485258 828 True 1081 1081 90.5910 1 810 1 chr4B.!!$R3 809
7 TraesCS3D01G078200 chr2D 522904501 522905248 747 False 1020 1020 91.6220 75 808 1 chr2D.!!$F1 733
8 TraesCS3D01G078200 chr2A 761484701 761485524 823 False 1002 1002 88.9700 1 807 1 chr2A.!!$F2 806
9 TraesCS3D01G078200 chr2A 605363997 605364817 820 False 976 976 88.4430 2 806 1 chr2A.!!$F1 804
10 TraesCS3D01G078200 chr7B 619584239 619585063 824 False 961 961 88.0290 1 809 1 chr7B.!!$F1 808
11 TraesCS3D01G078200 chr2B 342229003 342229825 822 True 941 941 87.6660 1 807 1 chr2B.!!$R1 806

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
861 881 0.030504 CAACGTCACATTGCCTTGCA 59.969 50.0 0.0 0.0 36.47 4.08 F
1052 1072 0.238553 GCAGCCTTCAGGACGAAAAC 59.761 55.0 0.0 0.0 37.39 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2289 2344 2.345760 GGTGGCCACATCTGCTTGG 61.346 63.158 35.78 0.0 35.81 3.61 R
2913 2968 2.976882 AGCCCAAGGTTGTAAGTCACTA 59.023 45.455 0.00 0.0 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 130 3.119316 TGTTCGAAACAACAAGCCAACAT 60.119 39.130 0.00 0.00 38.72 2.71
820 840 3.656457 AAAAATAAGCGTCCCGGGT 57.344 47.368 22.86 2.31 0.00 5.28
821 841 1.170442 AAAAATAAGCGTCCCGGGTG 58.830 50.000 22.86 15.91 0.00 4.61
822 842 0.037160 AAAATAAGCGTCCCGGGTGT 59.963 50.000 22.86 4.86 0.00 4.16
823 843 0.903942 AAATAAGCGTCCCGGGTGTA 59.096 50.000 22.86 7.08 0.00 2.90
824 844 0.462789 AATAAGCGTCCCGGGTGTAG 59.537 55.000 22.86 11.48 0.00 2.74
825 845 0.396139 ATAAGCGTCCCGGGTGTAGA 60.396 55.000 22.86 0.00 0.00 2.59
826 846 0.396139 TAAGCGTCCCGGGTGTAGAT 60.396 55.000 22.86 6.28 0.00 1.98
827 847 1.956629 AAGCGTCCCGGGTGTAGATG 61.957 60.000 22.86 7.23 0.00 2.90
828 848 2.106332 CGTCCCGGGTGTAGATGC 59.894 66.667 22.86 0.99 0.00 3.91
829 849 2.423898 CGTCCCGGGTGTAGATGCT 61.424 63.158 22.86 0.00 0.00 3.79
830 850 1.105167 CGTCCCGGGTGTAGATGCTA 61.105 60.000 22.86 0.00 0.00 3.49
831 851 0.674534 GTCCCGGGTGTAGATGCTAG 59.325 60.000 22.86 0.00 0.00 3.42
832 852 1.113517 TCCCGGGTGTAGATGCTAGC 61.114 60.000 22.86 8.10 0.00 3.42
833 853 1.367840 CCGGGTGTAGATGCTAGCC 59.632 63.158 13.29 0.00 0.00 3.93
834 854 1.367840 CGGGTGTAGATGCTAGCCC 59.632 63.158 13.29 3.65 0.00 5.19
835 855 1.115930 CGGGTGTAGATGCTAGCCCT 61.116 60.000 13.29 11.87 34.17 5.19
836 856 1.132500 GGGTGTAGATGCTAGCCCTT 58.868 55.000 13.29 0.00 33.58 3.95
837 857 1.070914 GGGTGTAGATGCTAGCCCTTC 59.929 57.143 13.29 6.78 33.58 3.46
838 858 2.043227 GGTGTAGATGCTAGCCCTTCT 58.957 52.381 13.29 13.84 0.00 2.85
839 859 2.036604 GGTGTAGATGCTAGCCCTTCTC 59.963 54.545 13.29 8.05 0.00 2.87
840 860 2.036604 GTGTAGATGCTAGCCCTTCTCC 59.963 54.545 13.29 3.85 0.00 3.71
841 861 1.621317 GTAGATGCTAGCCCTTCTCCC 59.379 57.143 13.29 3.34 0.00 4.30
842 862 0.766288 AGATGCTAGCCCTTCTCCCC 60.766 60.000 13.29 0.00 0.00 4.81
843 863 1.004758 ATGCTAGCCCTTCTCCCCA 59.995 57.895 13.29 0.00 0.00 4.96
844 864 0.624500 ATGCTAGCCCTTCTCCCCAA 60.625 55.000 13.29 0.00 0.00 4.12
845 865 1.224870 GCTAGCCCTTCTCCCCAAC 59.775 63.158 2.29 0.00 0.00 3.77
846 866 1.522569 CTAGCCCTTCTCCCCAACG 59.477 63.158 0.00 0.00 0.00 4.10
847 867 1.229400 TAGCCCTTCTCCCCAACGT 60.229 57.895 0.00 0.00 0.00 3.99
848 868 1.262640 TAGCCCTTCTCCCCAACGTC 61.263 60.000 0.00 0.00 0.00 4.34
849 869 2.890766 GCCCTTCTCCCCAACGTCA 61.891 63.158 0.00 0.00 0.00 4.35
850 870 1.003718 CCCTTCTCCCCAACGTCAC 60.004 63.158 0.00 0.00 0.00 3.67
851 871 1.752198 CCTTCTCCCCAACGTCACA 59.248 57.895 0.00 0.00 0.00 3.58
852 872 0.324943 CCTTCTCCCCAACGTCACAT 59.675 55.000 0.00 0.00 0.00 3.21
853 873 1.271379 CCTTCTCCCCAACGTCACATT 60.271 52.381 0.00 0.00 0.00 2.71
854 874 1.806542 CTTCTCCCCAACGTCACATTG 59.193 52.381 0.00 0.00 0.00 2.82
855 875 0.605319 TCTCCCCAACGTCACATTGC 60.605 55.000 0.00 0.00 0.00 3.56
856 876 1.586154 CTCCCCAACGTCACATTGCC 61.586 60.000 0.00 0.00 0.00 4.52
857 877 1.603455 CCCCAACGTCACATTGCCT 60.603 57.895 0.00 0.00 0.00 4.75
858 878 1.178534 CCCCAACGTCACATTGCCTT 61.179 55.000 0.00 0.00 0.00 4.35
859 879 0.039256 CCCAACGTCACATTGCCTTG 60.039 55.000 0.00 0.00 0.00 3.61
860 880 0.664166 CCAACGTCACATTGCCTTGC 60.664 55.000 0.00 0.00 0.00 4.01
861 881 0.030504 CAACGTCACATTGCCTTGCA 59.969 50.000 0.00 0.00 36.47 4.08
862 882 0.311790 AACGTCACATTGCCTTGCAG 59.688 50.000 0.00 0.00 40.61 4.41
863 883 1.443194 CGTCACATTGCCTTGCAGC 60.443 57.895 0.00 0.00 40.61 5.25
864 884 1.443194 GTCACATTGCCTTGCAGCG 60.443 57.895 0.00 0.00 40.61 5.18
865 885 2.807895 CACATTGCCTTGCAGCGC 60.808 61.111 0.00 0.00 40.61 5.92
866 886 2.987547 ACATTGCCTTGCAGCGCT 60.988 55.556 2.64 2.64 40.61 5.92
867 887 2.202570 CATTGCCTTGCAGCGCTC 60.203 61.111 7.13 2.98 40.61 5.03
868 888 2.360852 ATTGCCTTGCAGCGCTCT 60.361 55.556 7.13 0.00 40.61 4.09
869 889 2.404995 ATTGCCTTGCAGCGCTCTC 61.405 57.895 7.13 2.42 40.61 3.20
894 914 1.511305 GGGAACTCACGATCTGCGA 59.489 57.895 0.00 0.00 44.57 5.10
895 915 0.526524 GGGAACTCACGATCTGCGAG 60.527 60.000 0.00 0.00 44.57 5.03
896 916 0.526524 GGAACTCACGATCTGCGAGG 60.527 60.000 0.00 0.00 44.57 4.63
897 917 1.142778 GAACTCACGATCTGCGAGGC 61.143 60.000 0.00 0.00 44.57 4.70
898 918 1.877576 AACTCACGATCTGCGAGGCA 61.878 55.000 0.00 0.00 44.57 4.75
899 919 1.153765 CTCACGATCTGCGAGGCAA 60.154 57.895 0.00 0.00 44.57 4.52
900 920 1.144565 CTCACGATCTGCGAGGCAAG 61.145 60.000 0.00 0.00 44.57 4.01
901 921 2.169789 CACGATCTGCGAGGCAAGG 61.170 63.158 0.00 0.00 44.57 3.61
902 922 3.267860 CGATCTGCGAGGCAAGGC 61.268 66.667 0.00 0.00 44.57 4.35
903 923 3.267860 GATCTGCGAGGCAAGGCG 61.268 66.667 0.00 0.00 38.41 5.52
904 924 4.845580 ATCTGCGAGGCAAGGCGG 62.846 66.667 0.00 0.00 38.41 6.13
936 956 2.855887 TCGGACCGAGAGAAGACTG 58.144 57.895 13.88 0.00 0.00 3.51
937 957 1.137825 CGGACCGAGAGAAGACTGC 59.862 63.158 8.64 0.00 0.00 4.40
938 958 1.513622 GGACCGAGAGAAGACTGCC 59.486 63.158 0.00 0.00 0.00 4.85
939 959 1.137825 GACCGAGAGAAGACTGCCG 59.862 63.158 0.00 0.00 0.00 5.69
940 960 1.587933 GACCGAGAGAAGACTGCCGT 61.588 60.000 0.00 0.00 0.00 5.68
941 961 1.179814 ACCGAGAGAAGACTGCCGTT 61.180 55.000 0.00 0.00 0.00 4.44
942 962 0.456995 CCGAGAGAAGACTGCCGTTC 60.457 60.000 0.00 0.00 0.00 3.95
943 963 0.794981 CGAGAGAAGACTGCCGTTCG 60.795 60.000 0.00 0.00 0.00 3.95
944 964 0.456995 GAGAGAAGACTGCCGTTCGG 60.457 60.000 6.90 6.90 0.00 4.30
982 1002 3.435186 GCCTCTTTGCCTCGTGCC 61.435 66.667 0.00 0.00 40.16 5.01
1049 1069 2.048222 CGCAGCCTTCAGGACGAA 60.048 61.111 0.00 0.00 37.39 3.85
1052 1072 0.238553 GCAGCCTTCAGGACGAAAAC 59.761 55.000 0.00 0.00 37.39 2.43
1057 1077 0.953960 CTTCAGGACGAAAACCCCCG 60.954 60.000 0.00 0.00 31.71 5.73
1090 1110 3.404438 GGCACCGTATCCACCCCA 61.404 66.667 0.00 0.00 0.00 4.96
1095 1115 1.269703 ACCGTATCCACCCCACCTTC 61.270 60.000 0.00 0.00 0.00 3.46
1096 1116 0.981277 CCGTATCCACCCCACCTTCT 60.981 60.000 0.00 0.00 0.00 2.85
1097 1117 0.909623 CGTATCCACCCCACCTTCTT 59.090 55.000 0.00 0.00 0.00 2.52
1098 1118 2.112998 CGTATCCACCCCACCTTCTTA 58.887 52.381 0.00 0.00 0.00 2.10
1099 1119 2.704065 CGTATCCACCCCACCTTCTTAT 59.296 50.000 0.00 0.00 0.00 1.73
1100 1120 3.135895 CGTATCCACCCCACCTTCTTATT 59.864 47.826 0.00 0.00 0.00 1.40
1101 1121 3.953542 ATCCACCCCACCTTCTTATTC 57.046 47.619 0.00 0.00 0.00 1.75
1102 1122 2.929301 TCCACCCCACCTTCTTATTCT 58.071 47.619 0.00 0.00 0.00 2.40
1103 1123 3.265489 TCCACCCCACCTTCTTATTCTT 58.735 45.455 0.00 0.00 0.00 2.52
1104 1124 3.265995 TCCACCCCACCTTCTTATTCTTC 59.734 47.826 0.00 0.00 0.00 2.87
1105 1125 3.621558 CACCCCACCTTCTTATTCTTCC 58.378 50.000 0.00 0.00 0.00 3.46
1106 1126 3.267031 CACCCCACCTTCTTATTCTTCCT 59.733 47.826 0.00 0.00 0.00 3.36
1107 1127 3.923425 ACCCCACCTTCTTATTCTTCCTT 59.077 43.478 0.00 0.00 0.00 3.36
1108 1128 5.045140 CACCCCACCTTCTTATTCTTCCTTA 60.045 44.000 0.00 0.00 0.00 2.69
1109 1129 5.736616 ACCCCACCTTCTTATTCTTCCTTAT 59.263 40.000 0.00 0.00 0.00 1.73
1110 1130 6.912561 ACCCCACCTTCTTATTCTTCCTTATA 59.087 38.462 0.00 0.00 0.00 0.98
1111 1131 7.576649 ACCCCACCTTCTTATTCTTCCTTATAT 59.423 37.037 0.00 0.00 0.00 0.86
1112 1132 8.103935 CCCCACCTTCTTATTCTTCCTTATATC 58.896 40.741 0.00 0.00 0.00 1.63
1113 1133 8.885346 CCCACCTTCTTATTCTTCCTTATATCT 58.115 37.037 0.00 0.00 0.00 1.98
1120 1140 9.676129 TCTTATTCTTCCTTATATCTTCCACCT 57.324 33.333 0.00 0.00 0.00 4.00
1121 1141 9.936759 CTTATTCTTCCTTATATCTTCCACCTC 57.063 37.037 0.00 0.00 0.00 3.85
1131 1151 4.742649 TCCACCTCGCGCCTCTCT 62.743 66.667 0.00 0.00 0.00 3.10
1132 1152 4.200283 CCACCTCGCGCCTCTCTC 62.200 72.222 0.00 0.00 0.00 3.20
1138 1158 4.903355 CGCGCCTCTCTCTGCTCG 62.903 72.222 0.00 0.00 0.00 5.03
1144 1164 1.000717 GCCTCTCTCTGCTCGGATTAC 60.001 57.143 0.00 0.00 0.00 1.89
1146 1166 2.293122 CCTCTCTCTGCTCGGATTACTG 59.707 54.545 0.00 0.00 0.00 2.74
1159 1179 1.392710 ATTACTGCTCCCCTCGTCCG 61.393 60.000 0.00 0.00 0.00 4.79
1160 1180 2.488771 TTACTGCTCCCCTCGTCCGA 62.489 60.000 0.00 0.00 0.00 4.55
1161 1181 3.827898 CTGCTCCCCTCGTCCGAC 61.828 72.222 0.00 0.00 0.00 4.79
1164 1184 4.790962 CTCCCCTCGTCCGACCGA 62.791 72.222 0.00 0.00 35.22 4.69
1172 1192 3.735029 GTCCGACCGACGAGCTGT 61.735 66.667 0.00 0.00 45.77 4.40
1173 1193 3.429141 TCCGACCGACGAGCTGTC 61.429 66.667 0.00 0.00 45.77 3.51
1174 1194 4.477975 CCGACCGACGAGCTGTCC 62.478 72.222 0.00 0.00 45.23 4.02
1175 1195 4.813526 CGACCGACGAGCTGTCCG 62.814 72.222 0.00 0.00 45.23 4.79
1198 1218 4.712425 CGAACGCGTTCCCCGTCT 62.712 66.667 38.04 11.11 38.06 4.18
1211 1263 1.237285 CCCGTCTCAACTTTGCCTGG 61.237 60.000 0.00 0.00 0.00 4.45
1232 1284 4.018779 TGGTTTCCAGATTTGGGTACTAGG 60.019 45.833 1.81 0.00 45.10 3.02
1237 1289 4.226620 TCCAGATTTGGGTACTAGGAAACC 59.773 45.833 1.81 0.00 45.10 3.27
1241 1293 5.312443 AGATTTGGGTACTAGGAAACCAAGT 59.688 40.000 14.42 12.58 41.69 3.16
1243 1295 2.039348 TGGGTACTAGGAAACCAAGTGC 59.961 50.000 11.81 0.00 37.51 4.40
1250 1302 1.282875 GAAACCAAGTGCCACGCTC 59.717 57.895 0.00 0.00 0.00 5.03
1253 1305 2.031012 CCAAGTGCCACGCTCTGA 59.969 61.111 0.00 0.00 32.56 3.27
1256 1308 0.877071 CAAGTGCCACGCTCTGAAAT 59.123 50.000 0.00 0.00 32.56 2.17
1260 1312 0.391661 TGCCACGCTCTGAAATCTCC 60.392 55.000 0.00 0.00 0.00 3.71
1261 1313 1.424493 GCCACGCTCTGAAATCTCCG 61.424 60.000 0.00 0.00 0.00 4.63
1266 1318 1.135139 CGCTCTGAAATCTCCGGAGAA 59.865 52.381 36.58 20.00 41.36 2.87
1280 1332 4.843728 TCCGGAGAAATGCTAACTCAAAT 58.156 39.130 0.00 0.00 33.00 2.32
1282 1334 5.815740 TCCGGAGAAATGCTAACTCAAATAC 59.184 40.000 0.00 0.00 33.00 1.89
1298 1350 6.072728 ACTCAAATACTTTTATGCGCAGTTCA 60.073 34.615 18.32 0.00 0.00 3.18
1310 1362 0.811616 GCAGTTCATAGGTGGCTCGG 60.812 60.000 0.00 0.00 0.00 4.63
1311 1363 0.811616 CAGTTCATAGGTGGCTCGGC 60.812 60.000 0.00 0.00 0.00 5.54
1315 1367 1.449601 CATAGGTGGCTCGGCGTTT 60.450 57.895 6.85 0.00 0.00 3.60
1319 1371 2.729491 GTGGCTCGGCGTTTTTGC 60.729 61.111 6.85 4.99 0.00 3.68
1323 1375 1.008995 GCTCGGCGTTTTTGCTTCA 60.009 52.632 6.85 0.00 34.52 3.02
1410 1462 2.242043 CACCCAAGCATTCTTCCAAGT 58.758 47.619 0.00 0.00 0.00 3.16
1425 1477 3.104512 TCCAAGTGGATATGTTCTCGGT 58.895 45.455 0.00 0.00 39.78 4.69
1435 1487 0.834612 TGTTCTCGGTTCACCAAGGT 59.165 50.000 0.00 0.00 35.14 3.50
1445 1497 3.554129 GGTTCACCAAGGTTTTGCCATAC 60.554 47.826 0.00 0.00 36.31 2.39
1446 1498 2.950781 TCACCAAGGTTTTGCCATACA 58.049 42.857 0.00 0.00 40.61 2.29
1477 1532 1.700042 GGATTCCCCAGATGTCCGCT 61.700 60.000 0.00 0.00 34.14 5.52
1478 1533 0.250081 GATTCCCCAGATGTCCGCTC 60.250 60.000 0.00 0.00 0.00 5.03
1500 1555 3.312828 CGGTGAAGTTCTGAGAGTTCTG 58.687 50.000 4.17 0.00 31.65 3.02
1515 1570 0.761187 TTCTGAAGTCCTGTGCTGCT 59.239 50.000 0.00 0.00 0.00 4.24
1527 1582 0.959372 GTGCTGCTGATGCTGACCTT 60.959 55.000 0.00 0.00 40.01 3.50
1539 1594 1.528129 CTGACCTTGGCAAAGACCTC 58.472 55.000 1.11 0.00 35.19 3.85
1552 1607 1.070786 GACCTCCGTCAGTTTGCCA 59.929 57.895 0.00 0.00 38.99 4.92
1569 1624 1.071385 GCCAATGAGATGGACGAGGAT 59.929 52.381 0.00 0.00 43.54 3.24
1612 1667 0.322816 GCAGAGGTCCAATTGGCAGA 60.323 55.000 20.33 0.00 34.44 4.26
1614 1669 2.731572 CAGAGGTCCAATTGGCAGATT 58.268 47.619 20.33 3.19 34.44 2.40
2289 2344 1.398390 GAGATGAATGACCGTGGTTGC 59.602 52.381 0.00 0.00 0.00 4.17
2832 2887 2.297880 TCGTCGATCAGGACTTTTCCAA 59.702 45.455 0.00 0.00 45.72 3.53
2913 2968 7.531785 AGCATATGGGCTTATGGAACATAATCT 60.532 37.037 4.56 0.00 43.03 2.40
3043 3098 5.426185 AGGATGTATTGGGCAATTCAATTGT 59.574 36.000 11.80 0.00 42.20 2.71
3130 3185 9.487790 TTCTTCATGCATTATATATGTCGTTCA 57.512 29.630 0.00 0.00 0.00 3.18
3222 3278 7.661536 AAAGGTCTGCTAAGTGATGATACTA 57.338 36.000 0.00 0.00 0.00 1.82
3277 3335 9.764363 TTGAGCTAATGGTACTATACTGAATTG 57.236 33.333 0.00 0.00 0.00 2.32
3285 3343 7.709947 TGGTACTATACTGAATTGTTAGTCCG 58.290 38.462 0.00 0.00 0.00 4.79
3326 3384 6.038492 GTGTGCTAAAGTTGTACCACCTTTTA 59.962 38.462 6.77 0.97 31.33 1.52
3461 3519 6.989169 CAGAAGCTACTAGGTAAGCAATTGAT 59.011 38.462 10.34 0.00 0.00 2.57
3486 3544 1.745087 CACTAATTGCTGCCACCGAAT 59.255 47.619 0.00 0.00 0.00 3.34
3491 3549 2.045926 GCTGCCACCGAATCACCT 60.046 61.111 0.00 0.00 0.00 4.00
3498 3556 2.892425 CCGAATCACCTGCCGCTC 60.892 66.667 0.00 0.00 0.00 5.03
3606 3664 8.992073 ACATATCAATTTTGCTTTTTGAGGAAC 58.008 29.630 0.00 0.00 35.23 3.62
3707 3765 7.168972 TGTGTTTTGGCGAAGATTAATTTTGAG 59.831 33.333 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 130 4.383649 GTCACTAGAACACGCGTTAAATCA 59.616 41.667 10.22 0.00 34.75 2.57
470 471 4.704833 GTGCCTCCAAGCTCGCCA 62.705 66.667 0.00 0.00 0.00 5.69
667 670 7.413767 GGCCTCGAAATTATTTTCTCTACGTTT 60.414 37.037 0.00 0.00 39.30 3.60
740 743 0.859232 GGAATACACGCATAGCCACG 59.141 55.000 0.00 0.00 0.00 4.94
813 833 1.113517 GCTAGCATCTACACCCGGGA 61.114 60.000 32.02 3.67 0.00 5.14
814 834 1.367840 GCTAGCATCTACACCCGGG 59.632 63.158 22.25 22.25 0.00 5.73
815 835 1.367840 GGCTAGCATCTACACCCGG 59.632 63.158 18.24 0.00 0.00 5.73
816 836 1.115930 AGGGCTAGCATCTACACCCG 61.116 60.000 18.24 0.00 42.44 5.28
817 837 1.070914 GAAGGGCTAGCATCTACACCC 59.929 57.143 18.24 5.63 37.63 4.61
818 838 2.036604 GAGAAGGGCTAGCATCTACACC 59.963 54.545 18.24 6.43 0.00 4.16
819 839 2.036604 GGAGAAGGGCTAGCATCTACAC 59.963 54.545 18.24 8.52 0.00 2.90
820 840 2.320781 GGAGAAGGGCTAGCATCTACA 58.679 52.381 18.24 0.00 0.00 2.74
821 841 1.621317 GGGAGAAGGGCTAGCATCTAC 59.379 57.143 18.24 16.25 0.00 2.59
822 842 1.483307 GGGGAGAAGGGCTAGCATCTA 60.483 57.143 18.24 0.00 0.00 1.98
823 843 0.766288 GGGGAGAAGGGCTAGCATCT 60.766 60.000 18.24 16.06 0.00 2.90
824 844 1.056700 TGGGGAGAAGGGCTAGCATC 61.057 60.000 18.24 11.41 0.00 3.91
825 845 0.624500 TTGGGGAGAAGGGCTAGCAT 60.625 55.000 18.24 0.68 0.00 3.79
826 846 1.229820 TTGGGGAGAAGGGCTAGCA 60.230 57.895 18.24 0.00 0.00 3.49
827 847 1.224870 GTTGGGGAGAAGGGCTAGC 59.775 63.158 6.04 6.04 0.00 3.42
828 848 1.265454 ACGTTGGGGAGAAGGGCTAG 61.265 60.000 0.00 0.00 0.00 3.42
829 849 1.229400 ACGTTGGGGAGAAGGGCTA 60.229 57.895 0.00 0.00 0.00 3.93
830 850 2.529389 ACGTTGGGGAGAAGGGCT 60.529 61.111 0.00 0.00 0.00 5.19
831 851 2.046217 GACGTTGGGGAGAAGGGC 60.046 66.667 0.00 0.00 0.00 5.19
832 852 1.003718 GTGACGTTGGGGAGAAGGG 60.004 63.158 0.00 0.00 0.00 3.95
833 853 0.324943 ATGTGACGTTGGGGAGAAGG 59.675 55.000 0.00 0.00 0.00 3.46
834 854 1.806542 CAATGTGACGTTGGGGAGAAG 59.193 52.381 9.62 0.00 0.00 2.85
835 855 1.890876 CAATGTGACGTTGGGGAGAA 58.109 50.000 9.62 0.00 0.00 2.87
836 856 0.605319 GCAATGTGACGTTGGGGAGA 60.605 55.000 18.21 0.00 0.00 3.71
837 857 1.586154 GGCAATGTGACGTTGGGGAG 61.586 60.000 18.21 0.00 0.00 4.30
838 858 1.602323 GGCAATGTGACGTTGGGGA 60.602 57.895 18.21 0.00 0.00 4.81
839 859 1.178534 AAGGCAATGTGACGTTGGGG 61.179 55.000 18.21 0.00 0.00 4.96
840 860 0.039256 CAAGGCAATGTGACGTTGGG 60.039 55.000 18.21 0.00 0.00 4.12
841 861 0.664166 GCAAGGCAATGTGACGTTGG 60.664 55.000 18.21 3.76 33.44 3.77
842 862 0.030504 TGCAAGGCAATGTGACGTTG 59.969 50.000 12.97 12.97 34.76 4.10
843 863 0.311790 CTGCAAGGCAATGTGACGTT 59.688 50.000 0.00 0.00 38.41 3.99
844 864 1.951510 CTGCAAGGCAATGTGACGT 59.048 52.632 0.00 0.00 38.41 4.34
845 865 1.443194 GCTGCAAGGCAATGTGACG 60.443 57.895 0.00 0.00 38.41 4.35
846 866 1.443194 CGCTGCAAGGCAATGTGAC 60.443 57.895 0.00 0.00 38.41 3.67
847 867 2.956194 CGCTGCAAGGCAATGTGA 59.044 55.556 0.00 0.00 38.41 3.58
848 868 2.807895 GCGCTGCAAGGCAATGTG 60.808 61.111 0.00 0.00 38.41 3.21
849 869 2.986306 GAGCGCTGCAAGGCAATGT 61.986 57.895 18.48 0.00 38.41 2.71
850 870 2.202570 GAGCGCTGCAAGGCAATG 60.203 61.111 18.48 0.00 38.41 2.82
851 871 2.360852 AGAGCGCTGCAAGGCAAT 60.361 55.556 18.48 0.00 38.41 3.56
852 872 3.052082 GAGAGCGCTGCAAGGCAA 61.052 61.111 18.48 0.00 38.41 4.52
871 891 4.143333 ATCGTGAGTTCCCGGCGG 62.143 66.667 21.46 21.46 0.00 6.13
872 892 2.582498 GATCGTGAGTTCCCGGCG 60.582 66.667 0.00 0.00 0.00 6.46
873 893 1.519455 CAGATCGTGAGTTCCCGGC 60.519 63.158 0.00 0.00 0.00 6.13
874 894 1.519455 GCAGATCGTGAGTTCCCGG 60.519 63.158 0.00 0.00 0.00 5.73
875 895 1.874019 CGCAGATCGTGAGTTCCCG 60.874 63.158 0.00 0.00 0.00 5.14
876 896 0.526524 CTCGCAGATCGTGAGTTCCC 60.527 60.000 15.49 0.00 45.56 3.97
877 897 2.950877 CTCGCAGATCGTGAGTTCC 58.049 57.895 15.49 0.00 45.56 3.62
882 902 1.153765 CTTGCCTCGCAGATCGTGA 60.154 57.895 0.00 0.00 40.61 4.35
883 903 2.169789 CCTTGCCTCGCAGATCGTG 61.170 63.158 0.00 0.00 40.61 4.35
884 904 2.185350 CCTTGCCTCGCAGATCGT 59.815 61.111 0.00 0.00 40.61 3.73
885 905 3.267860 GCCTTGCCTCGCAGATCG 61.268 66.667 0.00 0.00 40.61 3.69
886 906 3.267860 CGCCTTGCCTCGCAGATC 61.268 66.667 0.00 0.00 40.61 2.75
887 907 4.845580 CCGCCTTGCCTCGCAGAT 62.846 66.667 0.00 0.00 40.61 2.90
918 938 1.306642 GCAGTCTTCTCTCGGTCCGA 61.307 60.000 14.54 14.54 0.00 4.55
919 939 1.137825 GCAGTCTTCTCTCGGTCCG 59.862 63.158 4.39 4.39 0.00 4.79
920 940 1.513622 GGCAGTCTTCTCTCGGTCC 59.486 63.158 0.00 0.00 0.00 4.46
921 941 1.137825 CGGCAGTCTTCTCTCGGTC 59.862 63.158 0.00 0.00 0.00 4.79
922 942 1.179814 AACGGCAGTCTTCTCTCGGT 61.180 55.000 0.00 0.00 0.00 4.69
923 943 0.456995 GAACGGCAGTCTTCTCTCGG 60.457 60.000 0.00 0.00 0.00 4.63
924 944 0.794981 CGAACGGCAGTCTTCTCTCG 60.795 60.000 0.00 0.00 0.00 4.04
925 945 0.456995 CCGAACGGCAGTCTTCTCTC 60.457 60.000 0.00 0.00 0.00 3.20
926 946 1.587054 CCGAACGGCAGTCTTCTCT 59.413 57.895 0.00 0.00 0.00 3.10
927 947 4.170723 CCGAACGGCAGTCTTCTC 57.829 61.111 0.00 0.00 0.00 2.87
1032 1052 1.227999 TTTTCGTCCTGAAGGCTGCG 61.228 55.000 0.00 0.00 37.99 5.18
1038 1058 0.953960 CGGGGGTTTTCGTCCTGAAG 60.954 60.000 0.00 0.00 37.99 3.02
1069 1089 2.510691 GTGGATACGGTGCCGGTG 60.511 66.667 15.44 0.00 44.69 4.94
1071 1091 4.540735 GGGTGGATACGGTGCCGG 62.541 72.222 15.44 0.00 44.69 6.13
1072 1092 4.540735 GGGGTGGATACGGTGCCG 62.541 72.222 9.29 9.29 46.03 5.69
1073 1093 3.404438 TGGGGTGGATACGGTGCC 61.404 66.667 0.00 0.00 42.51 5.01
1074 1094 2.124860 GTGGGGTGGATACGGTGC 60.125 66.667 0.00 0.00 42.51 5.01
1075 1095 1.559065 AAGGTGGGGTGGATACGGTG 61.559 60.000 0.00 0.00 42.51 4.94
1076 1096 1.229723 AAGGTGGGGTGGATACGGT 60.230 57.895 0.00 0.00 42.51 4.83
1077 1097 0.981277 AGAAGGTGGGGTGGATACGG 60.981 60.000 0.00 0.00 42.51 4.02
1078 1098 0.909623 AAGAAGGTGGGGTGGATACG 59.090 55.000 0.00 0.00 42.51 3.06
1079 1099 4.412528 AGAATAAGAAGGTGGGGTGGATAC 59.587 45.833 0.00 0.00 0.00 2.24
1095 1115 9.936759 GAGGTGGAAGATATAAGGAAGAATAAG 57.063 37.037 0.00 0.00 0.00 1.73
1096 1116 8.585881 CGAGGTGGAAGATATAAGGAAGAATAA 58.414 37.037 0.00 0.00 0.00 1.40
1097 1117 7.309867 GCGAGGTGGAAGATATAAGGAAGAATA 60.310 40.741 0.00 0.00 0.00 1.75
1098 1118 6.519213 GCGAGGTGGAAGATATAAGGAAGAAT 60.519 42.308 0.00 0.00 0.00 2.40
1099 1119 5.221461 GCGAGGTGGAAGATATAAGGAAGAA 60.221 44.000 0.00 0.00 0.00 2.52
1100 1120 4.281182 GCGAGGTGGAAGATATAAGGAAGA 59.719 45.833 0.00 0.00 0.00 2.87
1101 1121 4.561105 GCGAGGTGGAAGATATAAGGAAG 58.439 47.826 0.00 0.00 0.00 3.46
1102 1122 3.005472 CGCGAGGTGGAAGATATAAGGAA 59.995 47.826 0.00 0.00 0.00 3.36
1103 1123 2.557056 CGCGAGGTGGAAGATATAAGGA 59.443 50.000 0.00 0.00 0.00 3.36
1104 1124 2.927014 GCGCGAGGTGGAAGATATAAGG 60.927 54.545 12.10 0.00 0.00 2.69
1105 1125 2.329379 GCGCGAGGTGGAAGATATAAG 58.671 52.381 12.10 0.00 0.00 1.73
1106 1126 1.000506 GGCGCGAGGTGGAAGATATAA 59.999 52.381 12.10 0.00 0.00 0.98
1107 1127 0.601558 GGCGCGAGGTGGAAGATATA 59.398 55.000 12.10 0.00 0.00 0.86
1108 1128 1.115930 AGGCGCGAGGTGGAAGATAT 61.116 55.000 12.10 0.00 0.00 1.63
1109 1129 1.735376 GAGGCGCGAGGTGGAAGATA 61.735 60.000 12.10 0.00 0.00 1.98
1110 1130 3.077556 AGGCGCGAGGTGGAAGAT 61.078 61.111 12.10 0.00 0.00 2.40
1111 1131 3.760035 GAGGCGCGAGGTGGAAGA 61.760 66.667 12.10 0.00 0.00 2.87
1112 1132 3.708220 GAGAGGCGCGAGGTGGAAG 62.708 68.421 12.10 0.00 0.00 3.46
1113 1133 3.760035 GAGAGGCGCGAGGTGGAA 61.760 66.667 12.10 0.00 0.00 3.53
1114 1134 4.742649 AGAGAGGCGCGAGGTGGA 62.743 66.667 12.10 0.00 0.00 4.02
1115 1135 4.200283 GAGAGAGGCGCGAGGTGG 62.200 72.222 12.10 0.00 0.00 4.61
1116 1136 3.137459 AGAGAGAGGCGCGAGGTG 61.137 66.667 12.10 0.00 0.00 4.00
1117 1137 3.137459 CAGAGAGAGGCGCGAGGT 61.137 66.667 12.10 0.00 0.00 3.85
1118 1138 4.567385 GCAGAGAGAGGCGCGAGG 62.567 72.222 12.10 0.00 0.00 4.63
1119 1139 3.468266 GAGCAGAGAGAGGCGCGAG 62.468 68.421 12.10 0.00 34.54 5.03
1120 1140 3.513438 GAGCAGAGAGAGGCGCGA 61.513 66.667 12.10 0.00 34.54 5.87
1121 1141 4.903355 CGAGCAGAGAGAGGCGCG 62.903 72.222 0.00 0.00 45.87 6.86
1131 1151 0.747255 GGAGCAGTAATCCGAGCAGA 59.253 55.000 0.00 0.00 0.00 4.26
1132 1152 0.249657 GGGAGCAGTAATCCGAGCAG 60.250 60.000 0.00 0.00 37.75 4.24
1138 1158 0.389757 GACGAGGGGAGCAGTAATCC 59.610 60.000 0.00 0.00 35.99 3.01
1144 1164 3.827898 GTCGGACGAGGGGAGCAG 61.828 72.222 0.00 0.00 0.00 4.24
1190 1210 1.072505 GGCAAAGTTGAGACGGGGA 59.927 57.895 0.00 0.00 0.00 4.81
1192 1212 1.237285 CCAGGCAAAGTTGAGACGGG 61.237 60.000 0.00 0.00 0.00 5.28
1193 1213 0.535102 ACCAGGCAAAGTTGAGACGG 60.535 55.000 0.00 0.00 0.00 4.79
1195 1215 2.034685 GGAAACCAGGCAAAGTTGAGAC 59.965 50.000 0.00 0.00 0.00 3.36
1196 1216 2.306847 GGAAACCAGGCAAAGTTGAGA 58.693 47.619 0.00 0.00 0.00 3.27
1197 1217 2.031120 TGGAAACCAGGCAAAGTTGAG 58.969 47.619 0.00 0.00 0.00 3.02
1198 1218 2.151502 TGGAAACCAGGCAAAGTTGA 57.848 45.000 0.00 0.00 0.00 3.18
1211 1263 5.431179 TCCTAGTACCCAAATCTGGAAAC 57.569 43.478 0.00 0.00 46.92 2.78
1220 1272 4.721132 CACTTGGTTTCCTAGTACCCAAA 58.279 43.478 2.99 0.00 37.49 3.28
1221 1273 3.497227 GCACTTGGTTTCCTAGTACCCAA 60.497 47.826 2.99 0.00 37.49 4.12
1223 1275 2.617276 GGCACTTGGTTTCCTAGTACCC 60.617 54.545 7.93 6.14 37.00 3.69
1225 1277 3.072211 GTGGCACTTGGTTTCCTAGTAC 58.928 50.000 11.13 0.00 37.49 2.73
1226 1278 2.289195 CGTGGCACTTGGTTTCCTAGTA 60.289 50.000 16.72 0.00 37.49 1.82
1227 1279 1.542547 CGTGGCACTTGGTTTCCTAGT 60.543 52.381 16.72 0.00 39.96 2.57
1228 1280 1.156736 CGTGGCACTTGGTTTCCTAG 58.843 55.000 16.72 0.00 32.84 3.02
1229 1281 0.887387 GCGTGGCACTTGGTTTCCTA 60.887 55.000 16.72 0.00 0.00 2.94
1230 1282 2.193536 GCGTGGCACTTGGTTTCCT 61.194 57.895 16.72 0.00 0.00 3.36
1232 1284 1.166531 AGAGCGTGGCACTTGGTTTC 61.167 55.000 16.72 4.23 0.00 2.78
1237 1289 0.877071 ATTTCAGAGCGTGGCACTTG 59.123 50.000 16.72 8.76 0.00 3.16
1241 1293 0.391661 GGAGATTTCAGAGCGTGGCA 60.392 55.000 0.00 0.00 0.00 4.92
1243 1295 0.807667 CCGGAGATTTCAGAGCGTGG 60.808 60.000 0.00 0.00 0.00 4.94
1250 1302 3.539604 AGCATTTCTCCGGAGATTTCAG 58.460 45.455 33.97 21.56 37.29 3.02
1253 1305 5.104259 AGTTAGCATTTCTCCGGAGATTT 57.896 39.130 33.97 21.21 37.29 2.17
1256 1308 3.096852 TGAGTTAGCATTTCTCCGGAGA 58.903 45.455 30.49 30.49 35.27 3.71
1260 1312 6.910536 AGTATTTGAGTTAGCATTTCTCCG 57.089 37.500 0.00 0.00 0.00 4.63
1266 1318 7.432252 GCGCATAAAAGTATTTGAGTTAGCATT 59.568 33.333 0.30 0.00 39.02 3.56
1280 1332 5.293324 CACCTATGAACTGCGCATAAAAGTA 59.707 40.000 12.24 0.00 0.00 2.24
1282 1334 4.496341 CCACCTATGAACTGCGCATAAAAG 60.496 45.833 12.24 0.00 0.00 2.27
1287 1339 1.097547 GCCACCTATGAACTGCGCAT 61.098 55.000 12.24 0.00 0.00 4.73
1298 1350 0.322187 AAAAACGCCGAGCCACCTAT 60.322 50.000 0.00 0.00 0.00 2.57
1319 1371 3.767230 CAGTCGGCGTGCGTGAAG 61.767 66.667 6.85 0.00 0.00 3.02
1410 1462 2.835156 TGGTGAACCGAGAACATATCCA 59.165 45.455 0.00 0.00 39.43 3.41
1425 1477 3.300388 TGTATGGCAAAACCTTGGTGAA 58.700 40.909 0.00 0.00 40.22 3.18
1435 1487 1.611006 TGAAGCGCTTGTATGGCAAAA 59.389 42.857 30.47 0.00 36.53 2.44
1445 1497 1.012841 GGAATCCTCTGAAGCGCTTG 58.987 55.000 30.47 14.78 0.00 4.01
1446 1498 0.107459 GGGAATCCTCTGAAGCGCTT 60.107 55.000 25.35 25.35 0.00 4.68
1477 1532 1.996798 ACTCTCAGAACTTCACCGGA 58.003 50.000 9.46 0.00 0.00 5.14
1478 1533 2.297597 AGAACTCTCAGAACTTCACCGG 59.702 50.000 0.00 0.00 0.00 5.28
1500 1555 1.085091 CATCAGCAGCACAGGACTTC 58.915 55.000 0.00 0.00 0.00 3.01
1515 1570 1.202915 TCTTTGCCAAGGTCAGCATCA 60.203 47.619 0.00 0.00 39.11 3.07
1527 1582 1.371183 CTGACGGAGGTCTTTGCCA 59.629 57.895 0.00 0.00 43.79 4.92
1539 1594 1.522668 TCTCATTGGCAAACTGACGG 58.477 50.000 3.01 0.00 0.00 4.79
1552 1607 3.198635 ACAACATCCTCGTCCATCTCATT 59.801 43.478 0.00 0.00 0.00 2.57
1569 1624 3.454447 TCTGGAGGACTTTCAGAACAACA 59.546 43.478 0.00 0.00 34.97 3.33
1612 1667 3.648339 ATTGAAGAACAACAGCGCAAT 57.352 38.095 11.47 0.00 41.52 3.56
1614 1669 2.543445 CCAATTGAAGAACAACAGCGCA 60.543 45.455 11.47 0.00 41.52 6.09
1770 1825 3.249799 CAGCAAACATCCTGTTCGTTACA 59.750 43.478 0.00 0.00 40.14 2.41
2289 2344 2.345760 GGTGGCCACATCTGCTTGG 61.346 63.158 35.78 0.00 35.81 3.61
2832 2887 4.460382 TCTTCCGGTGACTATTTACGAACT 59.540 41.667 0.00 0.00 0.00 3.01
2892 2947 7.017551 TCACTAGATTATGTTCCATAAGCCCAT 59.982 37.037 8.22 0.00 0.00 4.00
2913 2968 2.976882 AGCCCAAGGTTGTAAGTCACTA 59.023 45.455 0.00 0.00 0.00 2.74
3043 3098 5.677319 ACAAGCATCTAAGCAAGTACCTA 57.323 39.130 0.00 0.00 36.85 3.08
3222 3278 1.276622 ATTCGCCCTACAGAACCAGT 58.723 50.000 0.00 0.00 0.00 4.00
3277 3335 3.048337 TGTGAATTGGACCGGACTAAC 57.952 47.619 9.46 0.00 0.00 2.34
3461 3519 2.426522 GTGGCAGCAATTAGTGACAGA 58.573 47.619 0.00 0.00 30.27 3.41
3486 3544 0.960364 GGAAAATGAGCGGCAGGTGA 60.960 55.000 1.45 0.00 0.00 4.02
3491 3549 0.539438 AACAGGGAAAATGAGCGGCA 60.539 50.000 1.45 0.00 0.00 5.69
3498 3556 8.716646 AAAGTACAAAGAAAACAGGGAAAATG 57.283 30.769 0.00 0.00 0.00 2.32
3606 3664 4.742167 CACAGAATTATAGACAGTGGCTCG 59.258 45.833 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.