Multiple sequence alignment - TraesCS3D01G077000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G077000 chr3D 100.000 3863 0 0 1 3863 37671862 37668000 0.000000e+00 7134.0
1 TraesCS3D01G077000 chr3D 76.044 455 89 16 1336 1780 37432297 37431853 6.500000e-53 219.0
2 TraesCS3D01G077000 chr3D 79.524 210 39 4 1330 1537 853521 853728 3.110000e-31 147.0
3 TraesCS3D01G077000 chr3D 83.784 74 10 2 2944 3015 614267688 614267615 6.930000e-08 69.4
4 TraesCS3D01G077000 chr3A 93.766 2342 111 11 545 2870 47645426 47643104 0.000000e+00 3483.0
5 TraesCS3D01G077000 chr3A 88.462 78 9 0 1468 1545 47387807 47387884 1.140000e-15 95.3
6 TraesCS3D01G077000 chr3B 90.800 2424 151 28 545 2933 60020328 60017942 0.000000e+00 3175.0
7 TraesCS3D01G077000 chr3B 87.852 2272 239 16 675 2933 60142956 60140709 0.000000e+00 2632.0
8 TraesCS3D01G077000 chr3B 87.037 594 52 8 3019 3597 60017943 60017360 0.000000e+00 647.0
9 TraesCS3D01G077000 chr3B 85.821 268 25 4 3333 3597 60128091 60127834 4.920000e-69 272.0
10 TraesCS3D01G077000 chr3B 85.326 184 16 5 3019 3201 60140710 60140537 3.070000e-41 180.0
11 TraesCS3D01G077000 chr3B 74.348 460 99 15 1338 1780 59890127 59890584 1.100000e-40 178.0
12 TraesCS3D01G077000 chr3B 75.862 319 47 20 3111 3409 59031241 59031549 6.730000e-28 135.0
13 TraesCS3D01G077000 chr3B 91.026 78 7 0 1468 1545 59646340 59646263 5.280000e-19 106.0
14 TraesCS3D01G077000 chr4B 92.718 563 31 5 1 555 172790722 172790162 0.000000e+00 804.0
15 TraesCS3D01G077000 chr6D 89.412 85 5 4 2936 3017 58456474 58456557 1.900000e-18 104.0
16 TraesCS3D01G077000 chr1B 93.220 59 3 1 494 551 529661280 529661338 6.880000e-13 86.1
17 TraesCS3D01G077000 chr1B 95.652 46 2 0 494 539 505116649 505116694 1.490000e-09 75.0
18 TraesCS3D01G077000 chr1B 97.674 43 1 0 494 536 625012453 625012495 1.490000e-09 75.0
19 TraesCS3D01G077000 chrUn 87.500 72 5 3 480 548 150786967 150786897 3.200000e-11 80.5
20 TraesCS3D01G077000 chr5B 88.406 69 4 4 480 545 474770104 474770171 3.200000e-11 80.5
21 TraesCS3D01G077000 chr7B 89.062 64 3 3 486 545 233381828 233381891 4.140000e-10 76.8
22 TraesCS3D01G077000 chr2B 89.062 64 3 3 486 545 40944352 40944289 4.140000e-10 76.8
23 TraesCS3D01G077000 chr2A 87.302 63 8 0 498 560 716443979 716443917 5.350000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G077000 chr3D 37668000 37671862 3862 True 7134 7134 100.0000 1 3863 1 chr3D.!!$R2 3862
1 TraesCS3D01G077000 chr3A 47643104 47645426 2322 True 3483 3483 93.7660 545 2870 1 chr3A.!!$R1 2325
2 TraesCS3D01G077000 chr3B 60017360 60020328 2968 True 1911 3175 88.9185 545 3597 2 chr3B.!!$R3 3052
3 TraesCS3D01G077000 chr3B 60140537 60142956 2419 True 1406 2632 86.5890 675 3201 2 chr3B.!!$R4 2526
4 TraesCS3D01G077000 chr4B 172790162 172790722 560 True 804 804 92.7180 1 555 1 chr4B.!!$R1 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
496 502 0.326595 TTGCCTGAATCCAACGGCTA 59.673 50.0 0.0 0.0 42.9 3.93 F
2073 2118 0.037590 TTCAGGTTGGCGGCTACAAT 59.962 50.0 23.4 9.9 0.0 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2449 2497 0.178992 TCAGACCTTTGCCCACCAAG 60.179 55.0 0.0 0.0 34.34 3.61 R
3103 3159 0.545071 CCAAAAGCCCCAGACCCATT 60.545 55.0 0.0 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 1.597742 TGGCTGCAGAGTTCTCAAAC 58.402 50.000 20.43 0.00 35.50 2.93
52 53 1.069204 TGCAGAGTTCTCAAACGCTCT 59.931 47.619 2.64 0.00 42.72 4.09
158 160 1.350193 GATGCACGTCGACAATGAGT 58.650 50.000 17.16 1.38 0.00 3.41
161 163 0.666274 GCACGTCGACAATGAGTCCA 60.666 55.000 17.16 0.00 44.66 4.02
163 165 0.388649 ACGTCGACAATGAGTCCAGC 60.389 55.000 17.16 0.00 44.66 4.85
207 209 0.825425 TGGGCGGCATGAGTTTTTGA 60.825 50.000 12.47 0.00 0.00 2.69
272 274 2.581354 GGTGCTGCTGGATCGACT 59.419 61.111 0.00 0.00 0.00 4.18
299 301 3.041940 GGAGGGTGTGCGACAACG 61.042 66.667 0.00 0.00 36.45 4.10
347 349 3.443045 CCTGCAACCCATGGCGAC 61.443 66.667 6.09 0.00 0.00 5.19
430 432 2.803670 GCGCGCTGACTCGTTGTA 60.804 61.111 26.67 0.00 0.00 2.41
432 434 1.154282 CGCGCTGACTCGTTGTAGA 60.154 57.895 5.56 0.00 0.00 2.59
465 471 0.391130 TGCGGAAGGACAGGAAATCG 60.391 55.000 0.00 0.00 0.00 3.34
496 502 0.326595 TTGCCTGAATCCAACGGCTA 59.673 50.000 0.00 0.00 42.90 3.93
565 574 5.126061 GGCCATCAAACATACACTTCATCTT 59.874 40.000 0.00 0.00 0.00 2.40
608 621 4.889995 CCTAGCATATATCGGATCCAGACA 59.110 45.833 13.41 0.00 0.00 3.41
719 732 2.929161 GCAAGCAAGCAATTGATCTGCA 60.929 45.455 23.19 0.00 42.48 4.41
725 738 1.135083 AGCAATTGATCTGCAAGCAGC 60.135 47.619 16.89 5.07 43.31 5.25
821 835 2.756760 AGGCAAGCACCAGTTTCATATG 59.243 45.455 0.00 0.00 0.00 1.78
1098 1134 1.535860 CCGGCAACAACAAGTGAAAGG 60.536 52.381 0.00 0.00 0.00 3.11
1101 1137 2.427095 GGCAACAACAAGTGAAAGGAGT 59.573 45.455 0.00 0.00 0.00 3.85
1123 1159 3.319198 GGAAGCTGTCGGTCCCCA 61.319 66.667 0.00 0.00 0.00 4.96
1126 1162 3.553095 AAGCTGTCGGTCCCCAAGC 62.553 63.158 0.00 0.00 0.00 4.01
1138 1174 0.684535 CCCCAAGCCGTTTTTCCATT 59.315 50.000 0.00 0.00 0.00 3.16
1245 1281 0.530211 CCAGGAGCTGCTTCATCTCG 60.530 60.000 11.19 0.00 28.59 4.04
1311 1347 5.407084 TCTTTTTGCGTCGATGTCTAAATCA 59.593 36.000 6.48 0.00 0.00 2.57
1366 1402 2.220586 TTCATCGTGGGGCAGACCA 61.221 57.895 0.00 0.00 42.91 4.02
1392 1428 1.032114 GGGCGCATAAGCTTGTCCTT 61.032 55.000 10.83 0.00 39.10 3.36
1575 1614 7.505646 GCATGATACTAACAAGCGAAGATAAG 58.494 38.462 0.00 0.00 0.00 1.73
1578 1617 6.475727 TGATACTAACAAGCGAAGATAAGCAC 59.524 38.462 0.00 0.00 35.48 4.40
1630 1669 2.835895 TGCTGGTAGCCGCCGATA 60.836 61.111 5.85 0.00 41.51 2.92
1660 1699 2.206576 ACAAAGGCTAAGGCTCTTGG 57.793 50.000 14.53 10.15 37.50 3.61
1674 1713 2.376109 CTCTTGGGCGAGAAGGTACTA 58.624 52.381 0.00 0.00 38.49 1.82
1885 1924 3.547868 CACCGACAAAGTAGACATGATCG 59.452 47.826 0.00 0.00 0.00 3.69
1899 1938 4.321718 ACATGATCGATATGGCTCCAAAG 58.678 43.478 0.00 0.00 0.00 2.77
1900 1939 3.407424 TGATCGATATGGCTCCAAAGG 57.593 47.619 0.00 0.00 0.00 3.11
1910 1949 1.593296 GCTCCAAAGGCAAGCTCCAG 61.593 60.000 0.00 0.00 33.23 3.86
1947 1986 5.221880 CACAAAAGAAAGCGAAATGATGGA 58.778 37.500 0.00 0.00 0.00 3.41
1948 1987 5.344128 CACAAAAGAAAGCGAAATGATGGAG 59.656 40.000 0.00 0.00 0.00 3.86
1949 1988 4.708726 AAAGAAAGCGAAATGATGGAGG 57.291 40.909 0.00 0.00 0.00 4.30
2073 2118 0.037590 TTCAGGTTGGCGGCTACAAT 59.962 50.000 23.40 9.90 0.00 2.71
2085 2130 2.301346 GGCTACAATTGGCAGCTATGT 58.699 47.619 24.78 1.01 35.60 2.29
2117 2162 5.455612 GGTTATACCCATCCAATTCTTCGGA 60.456 44.000 0.00 0.00 31.12 4.55
2137 2182 5.408299 TCGGAATTTGTTGTGTATCTCTGTG 59.592 40.000 0.00 0.00 0.00 3.66
2207 2255 4.139162 AGATAGATGACCCTAGTGGCAT 57.861 45.455 0.00 0.00 37.83 4.40
2211 2259 0.839946 ATGACCCTAGTGGCATGTCC 59.160 55.000 0.00 0.00 37.83 4.02
2257 2305 6.434340 AGAAGAAATTTTTACCGAGGCAGAAT 59.566 34.615 0.00 0.00 0.00 2.40
2267 2315 1.134699 CGAGGCAGAATACTTCAGGCA 60.135 52.381 8.20 0.00 42.89 4.75
2272 2320 2.424601 GCAGAATACTTCAGGCATGCAA 59.575 45.455 21.36 4.23 33.93 4.08
2323 2371 3.956848 CTCACATGATGACTCCCTCACTA 59.043 47.826 0.00 0.00 32.37 2.74
2466 2514 1.531602 GCTTGGTGGGCAAAGGTCT 60.532 57.895 0.00 0.00 0.00 3.85
2658 2706 2.654749 TCATCTACACCGACAAGCTG 57.345 50.000 0.00 0.00 0.00 4.24
2685 2733 4.838986 TCTATAGATAACCCAGTCCTTGCC 59.161 45.833 0.00 0.00 0.00 4.52
2872 2920 9.244292 AGTTCATCTCTACATGACTAAACTGTA 57.756 33.333 0.00 0.00 32.28 2.74
2884 2932 7.891183 TGACTAAACTGTAATGAGAAAGAGC 57.109 36.000 0.00 0.00 0.00 4.09
2898 2946 3.823304 AGAAAGAGCAGTTTGGGCTAAAG 59.177 43.478 0.00 0.00 42.78 1.85
2904 2952 6.010219 AGAGCAGTTTGGGCTAAAGAAAATA 58.990 36.000 0.00 0.00 42.78 1.40
2955 3004 8.915057 ATTGTTATTATAGAAGTGCATGCTCT 57.085 30.769 20.33 18.23 0.00 4.09
2957 3006 9.481340 TTGTTATTATAGAAGTGCATGCTCTAG 57.519 33.333 21.70 0.00 0.00 2.43
2958 3007 8.642432 TGTTATTATAGAAGTGCATGCTCTAGT 58.358 33.333 21.70 14.24 0.00 2.57
2959 3008 9.134734 GTTATTATAGAAGTGCATGCTCTAGTC 57.865 37.037 21.70 16.19 0.00 2.59
2960 3009 6.715347 TTATAGAAGTGCATGCTCTAGTCA 57.285 37.500 21.70 8.79 0.00 3.41
2961 3010 3.523606 AGAAGTGCATGCTCTAGTCAG 57.476 47.619 21.70 0.00 0.00 3.51
2962 3011 2.830923 AGAAGTGCATGCTCTAGTCAGT 59.169 45.455 21.70 5.92 0.00 3.41
2963 3012 2.669300 AGTGCATGCTCTAGTCAGTG 57.331 50.000 20.22 0.00 0.00 3.66
2964 3013 1.005340 GTGCATGCTCTAGTCAGTGC 58.995 55.000 20.33 0.00 40.85 4.40
2970 3019 3.683365 TGCTCTAGTCAGTGCAATCAA 57.317 42.857 0.00 0.00 45.63 2.57
2971 3020 4.006780 TGCTCTAGTCAGTGCAATCAAA 57.993 40.909 0.00 0.00 45.63 2.69
2972 3021 4.388485 TGCTCTAGTCAGTGCAATCAAAA 58.612 39.130 0.00 0.00 45.63 2.44
2973 3022 4.821260 TGCTCTAGTCAGTGCAATCAAAAA 59.179 37.500 0.00 0.00 45.63 1.94
2974 3023 5.149977 GCTCTAGTCAGTGCAATCAAAAAC 58.850 41.667 0.00 0.00 40.31 2.43
2975 3024 5.689383 TCTAGTCAGTGCAATCAAAAACC 57.311 39.130 0.00 0.00 0.00 3.27
2976 3025 3.354089 AGTCAGTGCAATCAAAAACCG 57.646 42.857 0.00 0.00 0.00 4.44
2977 3026 2.948979 AGTCAGTGCAATCAAAAACCGA 59.051 40.909 0.00 0.00 0.00 4.69
2978 3027 3.569701 AGTCAGTGCAATCAAAAACCGAT 59.430 39.130 0.00 0.00 0.00 4.18
2979 3028 4.037923 AGTCAGTGCAATCAAAAACCGATT 59.962 37.500 0.00 0.00 33.33 3.34
2980 3029 4.744631 GTCAGTGCAATCAAAAACCGATTT 59.255 37.500 0.00 0.00 30.65 2.17
2981 3030 4.744137 TCAGTGCAATCAAAAACCGATTTG 59.256 37.500 0.00 0.00 40.78 2.32
2982 3031 4.507388 CAGTGCAATCAAAAACCGATTTGT 59.493 37.500 0.00 0.00 40.40 2.83
2983 3032 5.006552 CAGTGCAATCAAAAACCGATTTGTT 59.993 36.000 0.00 0.00 40.40 2.83
2984 3033 5.006552 AGTGCAATCAAAAACCGATTTGTTG 59.993 36.000 0.00 10.81 40.40 3.33
2985 3034 5.006165 GTGCAATCAAAAACCGATTTGTTGA 59.994 36.000 17.03 12.47 40.40 3.18
2986 3035 5.582269 TGCAATCAAAAACCGATTTGTTGAA 59.418 32.000 17.03 10.49 40.40 2.69
2987 3036 6.128729 GCAATCAAAAACCGATTTGTTGAAG 58.871 36.000 17.03 10.87 40.40 3.02
2988 3037 6.019156 GCAATCAAAAACCGATTTGTTGAAGA 60.019 34.615 17.03 0.00 40.40 2.87
2989 3038 7.558137 CAATCAAAAACCGATTTGTTGAAGAG 58.442 34.615 6.47 0.00 40.40 2.85
2990 3039 6.443934 TCAAAAACCGATTTGTTGAAGAGA 57.556 33.333 1.09 0.00 40.40 3.10
2991 3040 6.262601 TCAAAAACCGATTTGTTGAAGAGAC 58.737 36.000 1.09 0.00 40.40 3.36
2992 3041 6.094881 TCAAAAACCGATTTGTTGAAGAGACT 59.905 34.615 1.09 0.00 40.40 3.24
2993 3042 7.281324 TCAAAAACCGATTTGTTGAAGAGACTA 59.719 33.333 1.09 0.00 40.40 2.59
2994 3043 6.541111 AAACCGATTTGTTGAAGAGACTAC 57.459 37.500 0.00 0.00 0.00 2.73
2995 3044 4.235360 ACCGATTTGTTGAAGAGACTACG 58.765 43.478 0.00 0.00 0.00 3.51
2996 3045 3.060895 CCGATTTGTTGAAGAGACTACGC 59.939 47.826 0.00 0.00 0.00 4.42
2997 3046 3.673338 CGATTTGTTGAAGAGACTACGCA 59.327 43.478 0.00 0.00 0.00 5.24
2998 3047 4.149922 CGATTTGTTGAAGAGACTACGCAA 59.850 41.667 0.00 0.00 0.00 4.85
2999 3048 5.163953 CGATTTGTTGAAGAGACTACGCAAT 60.164 40.000 0.00 0.00 0.00 3.56
3000 3049 6.034577 CGATTTGTTGAAGAGACTACGCAATA 59.965 38.462 0.00 0.00 0.00 1.90
3001 3050 6.462073 TTTGTTGAAGAGACTACGCAATAC 57.538 37.500 0.00 0.00 0.00 1.89
3002 3051 5.128992 TGTTGAAGAGACTACGCAATACA 57.871 39.130 0.00 0.00 0.00 2.29
3003 3052 5.720202 TGTTGAAGAGACTACGCAATACAT 58.280 37.500 0.00 0.00 0.00 2.29
3004 3053 6.163476 TGTTGAAGAGACTACGCAATACATT 58.837 36.000 0.00 0.00 0.00 2.71
3005 3054 6.649141 TGTTGAAGAGACTACGCAATACATTT 59.351 34.615 0.00 0.00 0.00 2.32
3006 3055 7.815549 TGTTGAAGAGACTACGCAATACATTTA 59.184 33.333 0.00 0.00 0.00 1.40
3007 3056 8.818057 GTTGAAGAGACTACGCAATACATTTAT 58.182 33.333 0.00 0.00 0.00 1.40
3009 3058 9.459640 TGAAGAGACTACGCAATACATTTATAC 57.540 33.333 0.00 0.00 0.00 1.47
3010 3059 8.503486 AAGAGACTACGCAATACATTTATACG 57.497 34.615 0.00 0.00 0.00 3.06
3011 3060 7.646314 AGAGACTACGCAATACATTTATACGT 58.354 34.615 0.00 0.00 35.72 3.57
3012 3061 7.802251 AGAGACTACGCAATACATTTATACGTC 59.198 37.037 0.00 0.00 34.31 4.34
3013 3062 7.420002 AGACTACGCAATACATTTATACGTCA 58.580 34.615 0.00 0.00 34.31 4.35
3014 3063 7.916977 AGACTACGCAATACATTTATACGTCAA 59.083 33.333 0.00 0.00 34.31 3.18
3015 3064 8.583810 ACTACGCAATACATTTATACGTCAAT 57.416 30.769 0.00 0.00 34.31 2.57
3016 3065 9.681692 ACTACGCAATACATTTATACGTCAATA 57.318 29.630 0.00 0.00 34.31 1.90
3018 3067 8.583810 ACGCAATACATTTATACGTCAATAGT 57.416 30.769 0.00 0.00 29.15 2.12
3019 3068 9.037737 ACGCAATACATTTATACGTCAATAGTT 57.962 29.630 0.00 0.00 29.15 2.24
3037 3087 9.764363 TCAATAGTTACCATACATTGACTGATC 57.236 33.333 0.00 0.00 32.25 2.92
3051 3101 7.335422 ACATTGACTGATCTGTTTGTTATCTCC 59.665 37.037 6.70 0.00 0.00 3.71
3067 3117 6.885376 TGTTATCTCCGTAGTTCTCTTCTCTT 59.115 38.462 0.00 0.00 0.00 2.85
3096 3152 5.071250 TCTGCTTAGTGTTCAGGAGGTTTTA 59.929 40.000 0.00 0.00 0.00 1.52
3098 3154 5.763204 TGCTTAGTGTTCAGGAGGTTTTAAG 59.237 40.000 0.00 0.00 0.00 1.85
3099 3155 5.334957 GCTTAGTGTTCAGGAGGTTTTAAGC 60.335 44.000 0.00 0.00 35.36 3.09
3100 3156 4.439253 AGTGTTCAGGAGGTTTTAAGCT 57.561 40.909 0.00 0.00 39.89 3.74
3150 3215 2.445145 TGGTGAATCCTTTCCCTTCACA 59.555 45.455 14.43 1.53 46.69 3.58
3152 3217 3.895041 GGTGAATCCTTTCCCTTCACAAA 59.105 43.478 14.43 0.00 46.69 2.83
3153 3218 4.528206 GGTGAATCCTTTCCCTTCACAAAT 59.472 41.667 14.43 0.00 46.69 2.32
3154 3219 5.336770 GGTGAATCCTTTCCCTTCACAAATC 60.337 44.000 14.43 0.00 46.69 2.17
3155 3220 4.772100 TGAATCCTTTCCCTTCACAAATCC 59.228 41.667 0.00 0.00 0.00 3.01
3156 3221 3.169512 TCCTTTCCCTTCACAAATCCC 57.830 47.619 0.00 0.00 0.00 3.85
3157 3222 2.448961 TCCTTTCCCTTCACAAATCCCA 59.551 45.455 0.00 0.00 0.00 4.37
3158 3223 3.116939 TCCTTTCCCTTCACAAATCCCAA 60.117 43.478 0.00 0.00 0.00 4.12
3159 3224 3.006859 CCTTTCCCTTCACAAATCCCAAC 59.993 47.826 0.00 0.00 0.00 3.77
3160 3225 3.611025 TTCCCTTCACAAATCCCAACT 57.389 42.857 0.00 0.00 0.00 3.16
3170 3235 4.777366 CACAAATCCCAACTAATCCCCTTT 59.223 41.667 0.00 0.00 0.00 3.11
3190 3255 2.355115 CCTCCAAACCCCTTCCCG 59.645 66.667 0.00 0.00 0.00 5.14
3191 3256 2.355115 CTCCAAACCCCTTCCCGG 59.645 66.667 0.00 0.00 0.00 5.73
3196 3261 3.205851 AAACCCCTTCCCGGTCTGC 62.206 63.158 0.00 0.00 31.48 4.26
3201 3266 0.474184 CCCTTCCCGGTCTGCAATAT 59.526 55.000 0.00 0.00 0.00 1.28
3203 3268 2.654863 CCTTCCCGGTCTGCAATATTT 58.345 47.619 0.00 0.00 0.00 1.40
3216 3281 6.744537 GTCTGCAATATTTGAGTGTTTGCTAG 59.255 38.462 7.37 0.00 42.34 3.42
3219 3284 5.393461 GCAATATTTGAGTGTTTGCTAGGCT 60.393 40.000 0.00 0.00 39.56 4.58
3221 3286 2.928801 TTGAGTGTTTGCTAGGCTGA 57.071 45.000 0.00 0.00 0.00 4.26
3224 3289 2.368548 TGAGTGTTTGCTAGGCTGAGAA 59.631 45.455 0.00 0.00 0.00 2.87
3228 3293 3.815401 GTGTTTGCTAGGCTGAGAAAGAA 59.185 43.478 0.00 0.00 0.00 2.52
3232 3297 4.558226 TGCTAGGCTGAGAAAGAATTGA 57.442 40.909 0.00 0.00 0.00 2.57
3233 3298 4.256920 TGCTAGGCTGAGAAAGAATTGAC 58.743 43.478 0.00 0.00 0.00 3.18
3236 3301 3.594134 AGGCTGAGAAAGAATTGACTCG 58.406 45.455 0.00 0.00 35.89 4.18
3237 3302 2.675348 GGCTGAGAAAGAATTGACTCGG 59.325 50.000 0.00 0.00 39.78 4.63
3242 3307 5.547465 TGAGAAAGAATTGACTCGGCTTTA 58.453 37.500 0.00 0.00 35.89 1.85
3252 3317 7.624360 ATTGACTCGGCTTTATTTCAACATA 57.376 32.000 0.00 0.00 0.00 2.29
3256 3321 9.337396 TGACTCGGCTTTATTTCAACATATAAT 57.663 29.630 0.00 0.00 0.00 1.28
3292 3357 8.844244 GCTCTCATAACATACAATTTCATTCCT 58.156 33.333 0.00 0.00 0.00 3.36
3305 3370 7.176515 ACAATTTCATTCCTACATAGCACACAA 59.823 33.333 0.00 0.00 0.00 3.33
3307 3372 4.180817 TCATTCCTACATAGCACACAACG 58.819 43.478 0.00 0.00 0.00 4.10
3308 3373 2.004583 TCCTACATAGCACACAACGC 57.995 50.000 0.00 0.00 0.00 4.84
3334 3399 8.664798 CGTGATCAAATTCCAATCTTTACTACA 58.335 33.333 0.00 0.00 0.00 2.74
3344 3409 8.322906 TCCAATCTTTACTACAACATGAACAG 57.677 34.615 0.00 0.00 0.00 3.16
3423 3488 3.185246 AGGACATATGAACCAAGAGCG 57.815 47.619 10.38 0.00 0.00 5.03
3454 3519 4.041740 AGCATGAATCATGATGCAACAC 57.958 40.909 25.77 12.24 46.21 3.32
3458 3523 3.155501 TGAATCATGATGCAACACCACA 58.844 40.909 14.39 0.00 0.00 4.17
3459 3524 3.764972 TGAATCATGATGCAACACCACAT 59.235 39.130 14.39 0.00 0.00 3.21
3519 3584 6.688578 ACTGCTTCGAATTCTAGAGTGTTAA 58.311 36.000 0.00 0.00 0.00 2.01
3556 3621 0.099968 CGCCATGAGCCATTGTTCTG 59.900 55.000 0.00 0.00 38.78 3.02
3560 3625 1.399440 CATGAGCCATTGTTCTGACCG 59.601 52.381 0.00 0.00 0.00 4.79
3573 3638 1.949847 CTGACCGGCTAGTGACTGGG 61.950 65.000 0.00 0.00 0.00 4.45
3597 3662 4.563993 CGTCTGTAACCACCCCTGAAAATA 60.564 45.833 0.00 0.00 0.00 1.40
3598 3663 5.318630 GTCTGTAACCACCCCTGAAAATAA 58.681 41.667 0.00 0.00 0.00 1.40
3599 3664 5.949952 GTCTGTAACCACCCCTGAAAATAAT 59.050 40.000 0.00 0.00 0.00 1.28
3600 3665 6.436218 GTCTGTAACCACCCCTGAAAATAATT 59.564 38.462 0.00 0.00 0.00 1.40
3601 3666 7.013834 TCTGTAACCACCCCTGAAAATAATTT 58.986 34.615 0.00 0.00 0.00 1.82
3602 3667 7.511028 TCTGTAACCACCCCTGAAAATAATTTT 59.489 33.333 0.00 0.00 35.12 1.82
3603 3668 7.445945 TGTAACCACCCCTGAAAATAATTTTG 58.554 34.615 0.00 0.00 31.94 2.44
3604 3669 6.755542 AACCACCCCTGAAAATAATTTTGA 57.244 33.333 0.00 0.00 31.94 2.69
3605 3670 6.755542 ACCACCCCTGAAAATAATTTTGAA 57.244 33.333 0.00 0.00 31.94 2.69
3606 3671 6.768483 ACCACCCCTGAAAATAATTTTGAAG 58.232 36.000 0.00 0.00 31.94 3.02
3607 3672 6.172630 CCACCCCTGAAAATAATTTTGAAGG 58.827 40.000 0.00 0.00 34.85 3.46
3608 3673 6.013812 CCACCCCTGAAAATAATTTTGAAGGA 60.014 38.462 11.55 0.00 36.13 3.36
3609 3674 7.449247 CACCCCTGAAAATAATTTTGAAGGAA 58.551 34.615 11.55 0.00 36.13 3.36
3610 3675 8.102676 CACCCCTGAAAATAATTTTGAAGGAAT 58.897 33.333 11.55 1.52 36.13 3.01
3611 3676 9.332713 ACCCCTGAAAATAATTTTGAAGGAATA 57.667 29.630 11.55 0.00 36.13 1.75
3654 3719 2.888834 ACAAAATGTGTGTGGCCTTC 57.111 45.000 3.32 0.00 39.72 3.46
3657 3722 3.134442 ACAAAATGTGTGTGGCCTTCAAT 59.866 39.130 3.32 0.00 39.72 2.57
3660 3725 4.420522 AATGTGTGTGGCCTTCAATTTT 57.579 36.364 3.32 0.00 0.00 1.82
3661 3726 3.902881 TGTGTGTGGCCTTCAATTTTT 57.097 38.095 3.32 0.00 0.00 1.94
3662 3727 3.791245 TGTGTGTGGCCTTCAATTTTTC 58.209 40.909 3.32 0.00 0.00 2.29
3663 3728 2.794350 GTGTGTGGCCTTCAATTTTTCG 59.206 45.455 3.32 0.00 0.00 3.46
3664 3729 2.690497 TGTGTGGCCTTCAATTTTTCGA 59.310 40.909 3.32 0.00 0.00 3.71
3665 3730 3.131223 TGTGTGGCCTTCAATTTTTCGAA 59.869 39.130 3.32 0.00 0.00 3.71
3666 3731 4.116238 GTGTGGCCTTCAATTTTTCGAAA 58.884 39.130 6.47 6.47 0.00 3.46
3667 3732 4.749598 GTGTGGCCTTCAATTTTTCGAAAT 59.250 37.500 12.12 0.00 0.00 2.17
3668 3733 4.749099 TGTGGCCTTCAATTTTTCGAAATG 59.251 37.500 12.12 7.52 0.00 2.32
3669 3734 4.749598 GTGGCCTTCAATTTTTCGAAATGT 59.250 37.500 12.12 0.35 0.00 2.71
3670 3735 5.236263 GTGGCCTTCAATTTTTCGAAATGTT 59.764 36.000 12.12 6.92 0.00 2.71
3671 3736 6.422400 GTGGCCTTCAATTTTTCGAAATGTTA 59.578 34.615 12.12 0.00 0.00 2.41
3672 3737 6.986817 TGGCCTTCAATTTTTCGAAATGTTAA 59.013 30.769 12.12 3.18 0.00 2.01
3673 3738 7.495934 TGGCCTTCAATTTTTCGAAATGTTAAA 59.504 29.630 12.12 2.78 0.00 1.52
3674 3739 8.338986 GGCCTTCAATTTTTCGAAATGTTAAAA 58.661 29.630 12.12 2.01 0.00 1.52
3675 3740 9.877137 GCCTTCAATTTTTCGAAATGTTAAAAT 57.123 25.926 12.12 4.47 33.05 1.82
3687 3752 9.202273 TCGAAATGTTAAAATTCTTTCCAATGG 57.798 29.630 0.00 0.00 0.00 3.16
3688 3753 8.987890 CGAAATGTTAAAATTCTTTCCAATGGT 58.012 29.630 0.00 0.00 0.00 3.55
3690 3755 8.846943 AATGTTAAAATTCTTTCCAATGGTCC 57.153 30.769 0.00 0.00 0.00 4.46
3691 3756 7.610580 TGTTAAAATTCTTTCCAATGGTCCT 57.389 32.000 0.00 0.00 0.00 3.85
3692 3757 8.028652 TGTTAAAATTCTTTCCAATGGTCCTT 57.971 30.769 0.00 0.00 0.00 3.36
3693 3758 8.147704 TGTTAAAATTCTTTCCAATGGTCCTTC 58.852 33.333 0.00 0.00 0.00 3.46
3694 3759 8.367911 GTTAAAATTCTTTCCAATGGTCCTTCT 58.632 33.333 0.00 0.00 0.00 2.85
3695 3760 7.379059 AAAATTCTTTCCAATGGTCCTTCTT 57.621 32.000 0.00 0.00 0.00 2.52
3696 3761 6.596309 AATTCTTTCCAATGGTCCTTCTTC 57.404 37.500 0.00 0.00 0.00 2.87
3697 3762 4.034285 TCTTTCCAATGGTCCTTCTTCC 57.966 45.455 0.00 0.00 0.00 3.46
3698 3763 2.899303 TTCCAATGGTCCTTCTTCCC 57.101 50.000 0.00 0.00 0.00 3.97
3699 3764 2.059756 TCCAATGGTCCTTCTTCCCT 57.940 50.000 0.00 0.00 0.00 4.20
3700 3765 2.358258 TCCAATGGTCCTTCTTCCCTT 58.642 47.619 0.00 0.00 0.00 3.95
3701 3766 2.721906 TCCAATGGTCCTTCTTCCCTTT 59.278 45.455 0.00 0.00 0.00 3.11
3702 3767 3.092301 CCAATGGTCCTTCTTCCCTTTC 58.908 50.000 0.00 0.00 0.00 2.62
3703 3768 3.245407 CCAATGGTCCTTCTTCCCTTTCT 60.245 47.826 0.00 0.00 0.00 2.52
3704 3769 4.013050 CAATGGTCCTTCTTCCCTTTCTC 58.987 47.826 0.00 0.00 0.00 2.87
3705 3770 2.991580 TGGTCCTTCTTCCCTTTCTCT 58.008 47.619 0.00 0.00 0.00 3.10
3706 3771 2.907042 TGGTCCTTCTTCCCTTTCTCTC 59.093 50.000 0.00 0.00 0.00 3.20
3707 3772 2.907042 GGTCCTTCTTCCCTTTCTCTCA 59.093 50.000 0.00 0.00 0.00 3.27
3708 3773 3.521531 GGTCCTTCTTCCCTTTCTCTCAT 59.478 47.826 0.00 0.00 0.00 2.90
3709 3774 4.717280 GGTCCTTCTTCCCTTTCTCTCATA 59.283 45.833 0.00 0.00 0.00 2.15
3710 3775 5.189934 GGTCCTTCTTCCCTTTCTCTCATAA 59.810 44.000 0.00 0.00 0.00 1.90
3711 3776 6.110033 GTCCTTCTTCCCTTTCTCTCATAAC 58.890 44.000 0.00 0.00 0.00 1.89
3712 3777 6.026186 TCCTTCTTCCCTTTCTCTCATAACT 58.974 40.000 0.00 0.00 0.00 2.24
3713 3778 6.155393 TCCTTCTTCCCTTTCTCTCATAACTC 59.845 42.308 0.00 0.00 0.00 3.01
3714 3779 5.941555 TCTTCCCTTTCTCTCATAACTCC 57.058 43.478 0.00 0.00 0.00 3.85
3715 3780 4.717280 TCTTCCCTTTCTCTCATAACTCCC 59.283 45.833 0.00 0.00 0.00 4.30
3716 3781 4.074799 TCCCTTTCTCTCATAACTCCCA 57.925 45.455 0.00 0.00 0.00 4.37
3717 3782 3.775316 TCCCTTTCTCTCATAACTCCCAC 59.225 47.826 0.00 0.00 0.00 4.61
3718 3783 3.777522 CCCTTTCTCTCATAACTCCCACT 59.222 47.826 0.00 0.00 0.00 4.00
3719 3784 4.383552 CCCTTTCTCTCATAACTCCCACTG 60.384 50.000 0.00 0.00 0.00 3.66
3720 3785 4.467795 CCTTTCTCTCATAACTCCCACTGA 59.532 45.833 0.00 0.00 0.00 3.41
3721 3786 5.046304 CCTTTCTCTCATAACTCCCACTGAA 60.046 44.000 0.00 0.00 0.00 3.02
3722 3787 5.407407 TTCTCTCATAACTCCCACTGAAC 57.593 43.478 0.00 0.00 0.00 3.18
3723 3788 4.678256 TCTCTCATAACTCCCACTGAACT 58.322 43.478 0.00 0.00 0.00 3.01
3724 3789 4.464244 TCTCTCATAACTCCCACTGAACTG 59.536 45.833 0.00 0.00 0.00 3.16
3725 3790 3.055819 TCTCATAACTCCCACTGAACTGC 60.056 47.826 0.00 0.00 0.00 4.40
3726 3791 2.637382 TCATAACTCCCACTGAACTGCA 59.363 45.455 0.00 0.00 0.00 4.41
3767 3832 9.961264 AAAAATAAAGGTGGGTTGTAAGAAAAA 57.039 25.926 0.00 0.00 0.00 1.94
3805 3870 9.135843 GTTTTACTATGGGAATAAAAACACAGC 57.864 33.333 0.00 0.00 37.00 4.40
3806 3871 5.560966 ACTATGGGAATAAAAACACAGCG 57.439 39.130 0.00 0.00 0.00 5.18
3807 3872 5.250200 ACTATGGGAATAAAAACACAGCGA 58.750 37.500 0.00 0.00 0.00 4.93
3808 3873 5.708230 ACTATGGGAATAAAAACACAGCGAA 59.292 36.000 0.00 0.00 0.00 4.70
3809 3874 4.920640 TGGGAATAAAAACACAGCGAAA 57.079 36.364 0.00 0.00 0.00 3.46
3810 3875 5.461032 TGGGAATAAAAACACAGCGAAAT 57.539 34.783 0.00 0.00 0.00 2.17
3811 3876 5.848406 TGGGAATAAAAACACAGCGAAATT 58.152 33.333 0.00 0.00 0.00 1.82
3812 3877 6.284459 TGGGAATAAAAACACAGCGAAATTT 58.716 32.000 0.00 0.00 0.00 1.82
3813 3878 7.434492 TGGGAATAAAAACACAGCGAAATTTA 58.566 30.769 0.00 0.00 0.00 1.40
3814 3879 8.091449 TGGGAATAAAAACACAGCGAAATTTAT 58.909 29.630 0.00 0.00 0.00 1.40
3815 3880 8.931775 GGGAATAAAAACACAGCGAAATTTATT 58.068 29.630 0.00 0.00 36.31 1.40
3819 3884 9.915629 ATAAAAACACAGCGAAATTTATTACCA 57.084 25.926 0.00 0.00 0.00 3.25
3820 3885 7.867445 AAAACACAGCGAAATTTATTACCAG 57.133 32.000 0.00 0.00 0.00 4.00
3821 3886 6.569179 AACACAGCGAAATTTATTACCAGT 57.431 33.333 0.00 0.00 0.00 4.00
3822 3887 5.938322 ACACAGCGAAATTTATTACCAGTG 58.062 37.500 0.00 0.00 0.00 3.66
3823 3888 5.472137 ACACAGCGAAATTTATTACCAGTGT 59.528 36.000 0.00 0.00 0.00 3.55
3824 3889 6.016610 ACACAGCGAAATTTATTACCAGTGTT 60.017 34.615 0.00 0.00 32.04 3.32
3825 3890 6.861055 CACAGCGAAATTTATTACCAGTGTTT 59.139 34.615 0.00 0.00 0.00 2.83
3826 3891 7.381139 CACAGCGAAATTTATTACCAGTGTTTT 59.619 33.333 0.00 0.00 0.00 2.43
3827 3892 7.593644 ACAGCGAAATTTATTACCAGTGTTTTC 59.406 33.333 0.00 0.00 0.00 2.29
3828 3893 7.593273 CAGCGAAATTTATTACCAGTGTTTTCA 59.407 33.333 0.00 0.00 0.00 2.69
3829 3894 8.303876 AGCGAAATTTATTACCAGTGTTTTCAT 58.696 29.630 0.00 0.00 0.00 2.57
3830 3895 9.562583 GCGAAATTTATTACCAGTGTTTTCATA 57.437 29.630 0.00 0.00 0.00 2.15
3834 3899 9.541884 AATTTATTACCAGTGTTTTCATACCCT 57.458 29.630 0.00 0.00 0.00 4.34
3838 3903 7.748691 TTACCAGTGTTTTCATACCCTAAAC 57.251 36.000 0.00 0.00 33.50 2.01
3839 3904 5.697067 ACCAGTGTTTTCATACCCTAAACA 58.303 37.500 0.00 0.00 38.90 2.83
3840 3905 5.768164 ACCAGTGTTTTCATACCCTAAACAG 59.232 40.000 0.00 0.00 41.04 3.16
3841 3906 5.335661 CCAGTGTTTTCATACCCTAAACAGC 60.336 44.000 0.00 0.00 41.04 4.40
3842 3907 5.240623 CAGTGTTTTCATACCCTAAACAGCA 59.759 40.000 0.00 0.00 41.04 4.41
3843 3908 5.830991 AGTGTTTTCATACCCTAAACAGCAA 59.169 36.000 0.00 0.00 41.04 3.91
3844 3909 6.016276 AGTGTTTTCATACCCTAAACAGCAAG 60.016 38.462 0.00 0.00 41.04 4.01
3845 3910 5.830991 TGTTTTCATACCCTAAACAGCAAGT 59.169 36.000 0.00 0.00 36.98 3.16
3846 3911 6.999272 TGTTTTCATACCCTAAACAGCAAGTA 59.001 34.615 0.00 0.00 36.98 2.24
3847 3912 7.668052 TGTTTTCATACCCTAAACAGCAAGTAT 59.332 33.333 0.00 0.00 36.98 2.12
3848 3913 7.859325 TTTCATACCCTAAACAGCAAGTATC 57.141 36.000 0.00 0.00 0.00 2.24
3849 3914 6.553953 TCATACCCTAAACAGCAAGTATCA 57.446 37.500 0.00 0.00 0.00 2.15
3850 3915 6.582636 TCATACCCTAAACAGCAAGTATCAG 58.417 40.000 0.00 0.00 0.00 2.90
3851 3916 4.910458 ACCCTAAACAGCAAGTATCAGT 57.090 40.909 0.00 0.00 0.00 3.41
3852 3917 5.242795 ACCCTAAACAGCAAGTATCAGTT 57.757 39.130 0.00 0.00 0.00 3.16
3853 3918 6.368779 ACCCTAAACAGCAAGTATCAGTTA 57.631 37.500 0.00 0.00 0.00 2.24
3854 3919 6.407202 ACCCTAAACAGCAAGTATCAGTTAG 58.593 40.000 0.00 0.00 0.00 2.34
3855 3920 6.212791 ACCCTAAACAGCAAGTATCAGTTAGA 59.787 38.462 0.00 0.00 0.00 2.10
3856 3921 7.092846 ACCCTAAACAGCAAGTATCAGTTAGAT 60.093 37.037 0.00 0.00 40.86 1.98
3857 3922 7.439655 CCCTAAACAGCAAGTATCAGTTAGATC 59.560 40.741 0.00 0.00 38.19 2.75
3858 3923 6.893958 AAACAGCAAGTATCAGTTAGATCG 57.106 37.500 0.00 0.00 38.19 3.69
3859 3924 5.836821 ACAGCAAGTATCAGTTAGATCGA 57.163 39.130 0.00 0.00 38.19 3.59
3860 3925 5.583495 ACAGCAAGTATCAGTTAGATCGAC 58.417 41.667 0.00 0.00 38.19 4.20
3861 3926 5.358442 ACAGCAAGTATCAGTTAGATCGACT 59.642 40.000 0.00 0.00 38.19 4.18
3862 3927 5.912396 CAGCAAGTATCAGTTAGATCGACTC 59.088 44.000 2.28 0.00 38.19 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.419324 GAGAACTCTGCAGCCAATGAAG 59.581 50.000 9.47 1.34 35.61 3.02
47 48 2.030893 TCCAGCAAAAATGACAAGAGCG 60.031 45.455 0.00 0.00 0.00 5.03
52 53 5.362430 ACTTAGGTTCCAGCAAAAATGACAA 59.638 36.000 0.00 0.00 0.00 3.18
111 112 4.360951 AAAGAAATCTGGTGGTCGGTTA 57.639 40.909 0.00 0.00 0.00 2.85
146 147 1.067565 TCTGCTGGACTCATTGTCGAC 60.068 52.381 9.11 9.11 46.24 4.20
158 160 3.749064 GTCGCCGTCTCTGCTGGA 61.749 66.667 0.00 0.00 0.00 3.86
192 194 2.728846 CGGACATCAAAAACTCATGCCG 60.729 50.000 0.00 0.00 33.80 5.69
207 209 2.107750 CGGATGCAGCTCGGACAT 59.892 61.111 0.22 0.00 0.00 3.06
259 261 1.300481 TCTCGTAGTCGATCCAGCAG 58.700 55.000 0.00 0.00 45.21 4.24
272 274 1.182667 CACACCCTCCACATCTCGTA 58.817 55.000 0.00 0.00 0.00 3.43
369 371 1.372623 GCCTTGCTGCACAAAGCTC 60.373 57.895 0.00 0.00 41.64 4.09
414 416 0.728129 TTCTACAACGAGTCAGCGCG 60.728 55.000 0.00 0.00 43.45 6.86
416 418 1.199327 TCCTTCTACAACGAGTCAGCG 59.801 52.381 0.00 0.00 37.29 5.18
418 420 2.416162 GCCTCCTTCTACAACGAGTCAG 60.416 54.545 0.00 0.00 0.00 3.51
448 450 1.359848 CACGATTTCCTGTCCTTCCG 58.640 55.000 0.00 0.00 0.00 4.30
456 458 0.460284 AGTAGCCGCACGATTTCCTG 60.460 55.000 0.00 0.00 0.00 3.86
539 548 3.505680 TGAAGTGTATGTTTGATGGCCAC 59.494 43.478 8.16 2.36 0.00 5.01
540 549 3.760738 TGAAGTGTATGTTTGATGGCCA 58.239 40.909 8.56 8.56 0.00 5.36
541 550 4.641989 AGATGAAGTGTATGTTTGATGGCC 59.358 41.667 0.00 0.00 0.00 5.36
542 551 5.824904 AGATGAAGTGTATGTTTGATGGC 57.175 39.130 0.00 0.00 0.00 4.40
543 552 6.375174 TCCAAGATGAAGTGTATGTTTGATGG 59.625 38.462 0.00 0.00 0.00 3.51
608 621 0.830648 TTTGATCCCGATCGCCTCTT 59.169 50.000 10.32 0.00 40.63 2.85
920 940 1.412710 TCCTGAAGCGACAACTGAAGT 59.587 47.619 0.00 0.00 0.00 3.01
1098 1134 1.272769 ACCGACAGCTTCCAACTACTC 59.727 52.381 0.00 0.00 0.00 2.59
1101 1137 0.606604 GGACCGACAGCTTCCAACTA 59.393 55.000 0.00 0.00 0.00 2.24
1123 1159 0.755686 TGGCAATGGAAAAACGGCTT 59.244 45.000 0.00 0.00 0.00 4.35
1126 1162 2.610232 CCTCTTGGCAATGGAAAAACGG 60.610 50.000 12.36 0.00 0.00 4.44
1131 1167 1.549203 GCTCCTCTTGGCAATGGAAA 58.451 50.000 18.45 3.25 0.00 3.13
1138 1174 2.978824 GTACCGCTCCTCTTGGCA 59.021 61.111 0.00 0.00 0.00 4.92
1358 1394 2.190578 CCCGGATCTTGGTCTGCC 59.809 66.667 0.73 0.00 0.00 4.85
1366 1402 1.598130 GCTTATGCGCCCGGATCTT 60.598 57.895 0.73 0.00 0.00 2.40
1527 1566 2.359531 GTCGTTGTTTGGTTTGATGGGA 59.640 45.455 0.00 0.00 0.00 4.37
1578 1617 4.492160 TCGTAGAGCCTTGCCGCG 62.492 66.667 0.00 0.00 0.00 6.46
1589 1628 2.900273 GCACCATGGCCTCGTAGA 59.100 61.111 13.04 0.00 0.00 2.59
1630 1669 5.629366 GCCTTAGCCTTTGTAAGTCATACCT 60.629 44.000 0.00 0.00 33.27 3.08
1644 1683 1.304617 GCCCAAGAGCCTTAGCCTT 59.695 57.895 0.00 0.00 41.25 4.35
1660 1699 1.335496 CTCAGCTAGTACCTTCTCGCC 59.665 57.143 0.00 0.00 0.00 5.54
1674 1713 1.738474 TATCATCCATGCCCTCAGCT 58.262 50.000 0.00 0.00 44.23 4.24
1885 1924 1.339291 GCTTGCCTTTGGAGCCATATC 59.661 52.381 0.00 0.00 0.00 1.63
1899 1938 1.382692 GGAGATTGCTGGAGCTTGCC 61.383 60.000 0.00 0.00 42.66 4.52
1900 1939 0.679002 TGGAGATTGCTGGAGCTTGC 60.679 55.000 0.00 0.00 42.66 4.01
1910 1949 1.909700 TTTGTGGGACTGGAGATTGC 58.090 50.000 0.00 0.00 0.00 3.56
2001 2046 1.018226 CAAGCAGGCTCCTCTGAACG 61.018 60.000 0.00 0.00 36.93 3.95
2004 2049 1.917282 AGCAAGCAGGCTCCTCTGA 60.917 57.895 0.00 0.00 41.05 3.27
2073 2118 0.611200 ACCGTACACATAGCTGCCAA 59.389 50.000 0.00 0.00 0.00 4.52
2085 2130 2.699846 GGATGGGTATAACCACCGTACA 59.300 50.000 12.94 0.00 44.72 2.90
2117 2162 5.827797 ACCACACAGAGATACACAACAAATT 59.172 36.000 0.00 0.00 0.00 1.82
2121 2166 3.386402 TCACCACACAGAGATACACAACA 59.614 43.478 0.00 0.00 0.00 3.33
2207 2255 0.250945 TGTTATTGGCGGCAAGGACA 60.251 50.000 28.83 28.13 0.00 4.02
2211 2259 1.204467 ACCATTGTTATTGGCGGCAAG 59.796 47.619 28.83 15.15 37.81 4.01
2257 2305 3.253188 GTGAACTTTGCATGCCTGAAGTA 59.747 43.478 23.12 11.87 32.44 2.24
2267 2315 3.159213 TCATGAGGGTGAACTTTGCAT 57.841 42.857 0.00 0.00 0.00 3.96
2272 2320 4.524328 GGTTGATTTCATGAGGGTGAACTT 59.476 41.667 0.00 0.00 37.80 2.66
2323 2371 4.492494 TGACATTGAGATGGCAGTGTAT 57.508 40.909 0.00 0.00 46.33 2.29
2449 2497 0.178992 TCAGACCTTTGCCCACCAAG 60.179 55.000 0.00 0.00 34.34 3.61
2451 2499 0.251297 CATCAGACCTTTGCCCACCA 60.251 55.000 0.00 0.00 0.00 4.17
2452 2500 0.251341 ACATCAGACCTTTGCCCACC 60.251 55.000 0.00 0.00 0.00 4.61
2466 2514 2.038952 CTCAACCAGGAACCTCACATCA 59.961 50.000 0.00 0.00 0.00 3.07
2573 2621 3.443976 CGTACGATGTGATGATTGTCCA 58.556 45.455 10.44 0.00 0.00 4.02
2578 2626 2.543031 CGACCCGTACGATGTGATGATT 60.543 50.000 18.76 0.00 0.00 2.57
2658 2706 3.770388 GGACTGGGTTATCTATAGAGGGC 59.230 52.174 8.70 0.67 0.00 5.19
2685 2733 1.057822 CGCGAGCATGTCTTCAACG 59.942 57.895 0.00 0.00 0.00 4.10
2719 2767 3.516615 CAATCTTCAACCTCTCGAGACC 58.483 50.000 12.08 0.00 0.00 3.85
2872 2920 2.560105 GCCCAAACTGCTCTTTCTCATT 59.440 45.455 0.00 0.00 0.00 2.57
2884 2932 9.520204 CATACATATTTTCTTTAGCCCAAACTG 57.480 33.333 0.00 0.00 0.00 3.16
2933 2982 9.134734 GACTAGAGCATGCACTTCTATAATAAC 57.865 37.037 22.83 4.63 0.00 1.89
2934 2983 8.860088 TGACTAGAGCATGCACTTCTATAATAA 58.140 33.333 22.83 0.75 0.00 1.40
2935 2984 8.409358 TGACTAGAGCATGCACTTCTATAATA 57.591 34.615 22.83 1.48 0.00 0.98
2936 2985 7.015098 ACTGACTAGAGCATGCACTTCTATAAT 59.985 37.037 22.83 8.03 0.00 1.28
2937 2986 6.322456 ACTGACTAGAGCATGCACTTCTATAA 59.678 38.462 22.83 2.96 0.00 0.98
2938 2987 5.830457 ACTGACTAGAGCATGCACTTCTATA 59.170 40.000 22.83 3.70 0.00 1.31
2939 2988 4.648762 ACTGACTAGAGCATGCACTTCTAT 59.351 41.667 22.83 9.32 0.00 1.98
2940 2989 4.019858 ACTGACTAGAGCATGCACTTCTA 58.980 43.478 22.83 17.21 0.00 2.10
2941 2990 2.830923 ACTGACTAGAGCATGCACTTCT 59.169 45.455 22.83 17.00 0.00 2.85
2942 2991 2.928757 CACTGACTAGAGCATGCACTTC 59.071 50.000 22.83 15.25 0.00 3.01
2943 2992 2.934364 GCACTGACTAGAGCATGCACTT 60.934 50.000 22.83 5.97 39.86 3.16
2944 2993 1.405256 GCACTGACTAGAGCATGCACT 60.405 52.381 21.45 21.45 39.86 4.40
2945 2994 1.005340 GCACTGACTAGAGCATGCAC 58.995 55.000 21.98 14.59 39.86 4.57
2946 2995 0.609662 TGCACTGACTAGAGCATGCA 59.390 50.000 21.98 10.86 43.98 3.96
2947 2996 3.448267 TGCACTGACTAGAGCATGC 57.552 52.632 10.51 10.51 43.98 4.06
2950 2999 3.683365 TTGATTGCACTGACTAGAGCA 57.317 42.857 0.00 0.00 46.52 4.26
2951 3000 5.149977 GTTTTTGATTGCACTGACTAGAGC 58.850 41.667 0.00 0.00 40.42 4.09
2952 3001 5.615544 CGGTTTTTGATTGCACTGACTAGAG 60.616 44.000 0.00 0.00 0.00 2.43
2953 3002 4.213270 CGGTTTTTGATTGCACTGACTAGA 59.787 41.667 0.00 0.00 0.00 2.43
2954 3003 4.213270 TCGGTTTTTGATTGCACTGACTAG 59.787 41.667 0.00 0.00 0.00 2.57
2955 3004 4.130857 TCGGTTTTTGATTGCACTGACTA 58.869 39.130 0.00 0.00 0.00 2.59
2956 3005 2.948979 TCGGTTTTTGATTGCACTGACT 59.051 40.909 0.00 0.00 0.00 3.41
2957 3006 3.347958 TCGGTTTTTGATTGCACTGAC 57.652 42.857 0.00 0.00 0.00 3.51
2958 3007 4.582701 AATCGGTTTTTGATTGCACTGA 57.417 36.364 0.00 0.00 34.86 3.41
2959 3008 4.507388 ACAAATCGGTTTTTGATTGCACTG 59.493 37.500 11.57 0.00 38.58 3.66
2960 3009 4.692228 ACAAATCGGTTTTTGATTGCACT 58.308 34.783 11.57 0.00 38.58 4.40
2961 3010 5.006165 TCAACAAATCGGTTTTTGATTGCAC 59.994 36.000 11.98 0.00 38.58 4.57
2962 3011 5.111989 TCAACAAATCGGTTTTTGATTGCA 58.888 33.333 11.98 0.00 38.58 4.08
2963 3012 5.649602 TCAACAAATCGGTTTTTGATTGC 57.350 34.783 11.98 0.00 38.58 3.56
2964 3013 7.434897 TCTCTTCAACAAATCGGTTTTTGATTG 59.565 33.333 14.96 12.21 38.58 2.67
2965 3014 7.435192 GTCTCTTCAACAAATCGGTTTTTGATT 59.565 33.333 14.96 0.00 38.58 2.57
2966 3015 6.918022 GTCTCTTCAACAAATCGGTTTTTGAT 59.082 34.615 14.96 2.89 38.58 2.57
2967 3016 6.094881 AGTCTCTTCAACAAATCGGTTTTTGA 59.905 34.615 11.98 11.98 38.58 2.69
2968 3017 6.265577 AGTCTCTTCAACAAATCGGTTTTTG 58.734 36.000 0.00 0.57 41.37 2.44
2969 3018 6.451064 AGTCTCTTCAACAAATCGGTTTTT 57.549 33.333 0.00 0.00 0.00 1.94
2970 3019 6.292703 CGTAGTCTCTTCAACAAATCGGTTTT 60.293 38.462 0.00 0.00 0.00 2.43
2971 3020 5.176958 CGTAGTCTCTTCAACAAATCGGTTT 59.823 40.000 0.00 0.00 0.00 3.27
2972 3021 4.684703 CGTAGTCTCTTCAACAAATCGGTT 59.315 41.667 0.00 0.00 0.00 4.44
2973 3022 4.235360 CGTAGTCTCTTCAACAAATCGGT 58.765 43.478 0.00 0.00 0.00 4.69
2974 3023 3.060895 GCGTAGTCTCTTCAACAAATCGG 59.939 47.826 0.00 0.00 0.00 4.18
2975 3024 3.673338 TGCGTAGTCTCTTCAACAAATCG 59.327 43.478 0.00 0.00 0.00 3.34
2976 3025 5.591643 TTGCGTAGTCTCTTCAACAAATC 57.408 39.130 0.00 0.00 0.00 2.17
2977 3026 6.649141 TGTATTGCGTAGTCTCTTCAACAAAT 59.351 34.615 0.00 0.00 0.00 2.32
2978 3027 5.986741 TGTATTGCGTAGTCTCTTCAACAAA 59.013 36.000 0.00 0.00 0.00 2.83
2979 3028 5.534407 TGTATTGCGTAGTCTCTTCAACAA 58.466 37.500 0.00 0.00 0.00 2.83
2980 3029 5.128992 TGTATTGCGTAGTCTCTTCAACA 57.871 39.130 0.00 0.00 0.00 3.33
2981 3030 6.648725 AATGTATTGCGTAGTCTCTTCAAC 57.351 37.500 0.00 0.00 0.00 3.18
2982 3031 8.942338 ATAAATGTATTGCGTAGTCTCTTCAA 57.058 30.769 0.00 0.00 0.00 2.69
2983 3032 9.459640 GTATAAATGTATTGCGTAGTCTCTTCA 57.540 33.333 0.00 0.00 0.00 3.02
2984 3033 8.628279 CGTATAAATGTATTGCGTAGTCTCTTC 58.372 37.037 0.00 0.00 0.00 2.87
2985 3034 8.133627 ACGTATAAATGTATTGCGTAGTCTCTT 58.866 33.333 4.12 0.00 32.22 2.85
2986 3035 7.646314 ACGTATAAATGTATTGCGTAGTCTCT 58.354 34.615 4.12 0.00 32.22 3.10
2987 3036 7.588854 TGACGTATAAATGTATTGCGTAGTCTC 59.411 37.037 5.53 0.00 33.32 3.36
2988 3037 7.420002 TGACGTATAAATGTATTGCGTAGTCT 58.580 34.615 5.53 0.00 33.32 3.24
2989 3038 7.613247 TGACGTATAAATGTATTGCGTAGTC 57.387 36.000 5.53 0.00 33.32 2.59
2990 3039 7.990541 TTGACGTATAAATGTATTGCGTAGT 57.009 32.000 5.53 0.00 33.32 2.73
2992 3041 9.681692 ACTATTGACGTATAAATGTATTGCGTA 57.318 29.630 5.53 0.00 33.32 4.42
2993 3042 8.583810 ACTATTGACGTATAAATGTATTGCGT 57.416 30.769 5.29 5.29 34.77 5.24
3006 3055 9.472361 GTCAATGTATGGTAACTATTGACGTAT 57.528 33.333 11.21 0.00 44.07 3.06
3007 3056 8.861033 GTCAATGTATGGTAACTATTGACGTA 57.139 34.615 11.21 0.00 44.07 3.57
3008 3057 7.766219 GTCAATGTATGGTAACTATTGACGT 57.234 36.000 11.21 0.00 44.07 4.34
3011 3060 9.764363 GATCAGTCAATGTATGGTAACTATTGA 57.236 33.333 0.00 0.00 35.93 2.57
3012 3061 9.770097 AGATCAGTCAATGTATGGTAACTATTG 57.230 33.333 0.00 0.00 37.61 1.90
3013 3062 9.770097 CAGATCAGTCAATGTATGGTAACTATT 57.230 33.333 0.00 0.00 37.61 1.73
3014 3063 8.928448 ACAGATCAGTCAATGTATGGTAACTAT 58.072 33.333 0.00 0.00 37.61 2.12
3015 3064 8.306313 ACAGATCAGTCAATGTATGGTAACTA 57.694 34.615 0.00 0.00 37.61 2.24
3016 3065 7.187824 ACAGATCAGTCAATGTATGGTAACT 57.812 36.000 0.00 0.00 37.61 2.24
3017 3066 7.849804 AACAGATCAGTCAATGTATGGTAAC 57.150 36.000 0.00 0.00 0.00 2.50
3018 3067 7.882791 ACAAACAGATCAGTCAATGTATGGTAA 59.117 33.333 0.00 0.00 0.00 2.85
3019 3068 7.394016 ACAAACAGATCAGTCAATGTATGGTA 58.606 34.615 0.00 0.00 0.00 3.25
3020 3069 6.240894 ACAAACAGATCAGTCAATGTATGGT 58.759 36.000 0.00 0.00 0.00 3.55
3021 3070 6.748333 ACAAACAGATCAGTCAATGTATGG 57.252 37.500 0.00 0.00 0.00 2.74
3037 3087 6.622549 AGAGAACTACGGAGATAACAAACAG 58.377 40.000 0.00 0.00 0.00 3.16
3051 3101 6.415702 CAGACGATAAGAGAAGAGAACTACG 58.584 44.000 0.00 0.00 0.00 3.51
3067 3117 4.014406 TCCTGAACACTAAGCAGACGATA 58.986 43.478 0.00 0.00 0.00 2.92
3096 3152 1.693640 CCCAGACCCATTGGAGCTT 59.306 57.895 3.62 0.00 37.96 3.74
3098 3154 2.276740 CCCCAGACCCATTGGAGC 59.723 66.667 3.62 0.00 37.96 4.70
3099 3155 1.867595 AAGCCCCAGACCCATTGGAG 61.868 60.000 3.62 0.00 37.96 3.86
3100 3156 1.442886 AAAGCCCCAGACCCATTGGA 61.443 55.000 3.62 0.00 37.96 3.53
3103 3159 0.545071 CCAAAAGCCCCAGACCCATT 60.545 55.000 0.00 0.00 0.00 3.16
3105 3161 2.525592 CCAAAAGCCCCAGACCCA 59.474 61.111 0.00 0.00 0.00 4.51
3106 3162 2.283894 CCCAAAAGCCCCAGACCC 60.284 66.667 0.00 0.00 0.00 4.46
3139 3204 3.922375 AGTTGGGATTTGTGAAGGGAAA 58.078 40.909 0.00 0.00 0.00 3.13
3150 3215 5.030147 GGAAAAGGGGATTAGTTGGGATTT 58.970 41.667 0.00 0.00 0.00 2.17
3152 3217 3.052109 GGGAAAAGGGGATTAGTTGGGAT 60.052 47.826 0.00 0.00 0.00 3.85
3153 3218 2.313643 GGGAAAAGGGGATTAGTTGGGA 59.686 50.000 0.00 0.00 0.00 4.37
3154 3219 2.314852 AGGGAAAAGGGGATTAGTTGGG 59.685 50.000 0.00 0.00 0.00 4.12
3155 3220 3.627492 GGAGGGAAAAGGGGATTAGTTGG 60.627 52.174 0.00 0.00 0.00 3.77
3156 3221 3.011257 TGGAGGGAAAAGGGGATTAGTTG 59.989 47.826 0.00 0.00 0.00 3.16
3157 3222 3.274383 TGGAGGGAAAAGGGGATTAGTT 58.726 45.455 0.00 0.00 0.00 2.24
3158 3223 2.942905 TGGAGGGAAAAGGGGATTAGT 58.057 47.619 0.00 0.00 0.00 2.24
3159 3224 4.023980 GTTTGGAGGGAAAAGGGGATTAG 58.976 47.826 0.00 0.00 0.00 1.73
3160 3225 3.245839 GGTTTGGAGGGAAAAGGGGATTA 60.246 47.826 0.00 0.00 0.00 1.75
3170 3235 1.440362 GGGAAGGGGTTTGGAGGGAA 61.440 60.000 0.00 0.00 0.00 3.97
3190 3255 4.622740 GCAAACACTCAAATATTGCAGACC 59.377 41.667 4.10 0.00 44.29 3.85
3191 3256 5.464168 AGCAAACACTCAAATATTGCAGAC 58.536 37.500 10.89 0.00 46.59 3.51
3196 3261 6.032094 CAGCCTAGCAAACACTCAAATATTG 58.968 40.000 0.00 0.00 0.00 1.90
3201 3266 3.141398 CTCAGCCTAGCAAACACTCAAA 58.859 45.455 0.00 0.00 0.00 2.69
3203 3268 1.970640 TCTCAGCCTAGCAAACACTCA 59.029 47.619 0.00 0.00 0.00 3.41
3216 3281 2.675348 CCGAGTCAATTCTTTCTCAGCC 59.325 50.000 0.00 0.00 0.00 4.85
3219 3284 3.685139 AGCCGAGTCAATTCTTTCTCA 57.315 42.857 0.00 0.00 0.00 3.27
3221 3286 7.174946 TGAAATAAAGCCGAGTCAATTCTTTCT 59.825 33.333 0.00 0.00 0.00 2.52
3224 3289 6.817765 TGAAATAAAGCCGAGTCAATTCTT 57.182 33.333 0.00 0.00 0.00 2.52
3228 3293 5.957842 TGTTGAAATAAAGCCGAGTCAAT 57.042 34.783 0.00 0.00 0.00 2.57
3232 3297 9.950680 CAATTATATGTTGAAATAAAGCCGAGT 57.049 29.630 0.00 0.00 0.00 4.18
3256 3321 7.791029 TGTATGTTATGAGAGCCATTAGTCAA 58.209 34.615 0.00 0.00 36.71 3.18
3264 3329 8.523915 AATGAAATTGTATGTTATGAGAGCCA 57.476 30.769 0.00 0.00 33.44 4.75
3292 3357 1.064582 CACGCGTTGTGTGCTATGTA 58.935 50.000 10.22 0.00 43.88 2.29
3305 3370 3.009723 AGATTGGAATTTGATCACGCGT 58.990 40.909 5.58 5.58 0.00 6.01
3307 3372 6.555315 AGTAAAGATTGGAATTTGATCACGC 58.445 36.000 0.00 0.00 0.00 5.34
3308 3373 8.664798 TGTAGTAAAGATTGGAATTTGATCACG 58.335 33.333 0.00 0.00 0.00 4.35
3318 3383 8.684386 TGTTCATGTTGTAGTAAAGATTGGAA 57.316 30.769 0.00 0.00 0.00 3.53
3334 3399 8.922931 TGATGTATTATATGGCTGTTCATGTT 57.077 30.769 0.00 0.00 0.00 2.71
3338 3403 9.489084 GTAGTTGATGTATTATATGGCTGTTCA 57.511 33.333 0.00 0.00 0.00 3.18
3389 3454 9.994432 GTTCATATGTCCTTTGAGTGATTAAAG 57.006 33.333 1.90 0.00 34.49 1.85
3397 3462 6.126863 TCTTGGTTCATATGTCCTTTGAGT 57.873 37.500 16.21 0.00 0.00 3.41
3406 3471 3.610040 TGACGCTCTTGGTTCATATGT 57.390 42.857 1.90 0.00 0.00 2.29
3411 3476 1.593196 CCTTTGACGCTCTTGGTTCA 58.407 50.000 0.00 0.00 0.00 3.18
3423 3488 3.581024 TGATTCATGCTTGCCTTTGAC 57.419 42.857 0.00 0.00 0.00 3.18
3454 3519 4.244862 GTTGTTAAGCAAATGGGATGTGG 58.755 43.478 0.00 0.00 39.03 4.17
3458 3523 5.163364 TGTGTTGTTGTTAAGCAAATGGGAT 60.163 36.000 0.00 0.00 39.03 3.85
3459 3524 4.160439 TGTGTTGTTGTTAAGCAAATGGGA 59.840 37.500 0.00 0.00 39.03 4.37
3519 3584 1.263217 GCGTCGGTTTGTTGACAATCT 59.737 47.619 0.00 0.00 35.55 2.40
3529 3594 2.480555 GCTCATGGCGTCGGTTTG 59.519 61.111 0.00 0.00 0.00 2.93
3556 3621 2.893398 CCCAGTCACTAGCCGGTC 59.107 66.667 1.90 0.00 0.00 4.79
3573 3638 1.375523 CAGGGGTGGTTACAGACGC 60.376 63.158 0.00 0.00 0.00 5.19
3624 3689 8.608317 GCCACACACATTTTGTAAACTTAATTT 58.392 29.630 0.00 0.00 35.67 1.82
3625 3690 7.225734 GGCCACACACATTTTGTAAACTTAATT 59.774 33.333 0.00 0.00 35.67 1.40
3626 3691 6.704050 GGCCACACACATTTTGTAAACTTAAT 59.296 34.615 0.00 0.00 35.67 1.40
3627 3692 6.043411 GGCCACACACATTTTGTAAACTTAA 58.957 36.000 0.00 0.00 35.67 1.85
3628 3693 5.361285 AGGCCACACACATTTTGTAAACTTA 59.639 36.000 5.01 0.00 35.67 2.24
3629 3694 4.161377 AGGCCACACACATTTTGTAAACTT 59.839 37.500 5.01 0.00 35.67 2.66
3630 3695 3.704061 AGGCCACACACATTTTGTAAACT 59.296 39.130 5.01 0.00 35.67 2.66
3631 3696 4.053469 AGGCCACACACATTTTGTAAAC 57.947 40.909 5.01 0.00 35.67 2.01
3632 3697 4.160439 TGAAGGCCACACACATTTTGTAAA 59.840 37.500 5.01 0.00 35.67 2.01
3633 3698 3.701542 TGAAGGCCACACACATTTTGTAA 59.298 39.130 5.01 0.00 35.67 2.41
3634 3699 3.291584 TGAAGGCCACACACATTTTGTA 58.708 40.909 5.01 0.00 35.67 2.41
3635 3700 2.106566 TGAAGGCCACACACATTTTGT 58.893 42.857 5.01 0.00 39.97 2.83
3636 3701 2.886862 TGAAGGCCACACACATTTTG 57.113 45.000 5.01 0.00 0.00 2.44
3637 3702 4.420522 AATTGAAGGCCACACACATTTT 57.579 36.364 5.01 0.00 0.00 1.82
3638 3703 4.420522 AAATTGAAGGCCACACACATTT 57.579 36.364 5.01 5.50 0.00 2.32
3639 3704 4.420522 AAAATTGAAGGCCACACACATT 57.579 36.364 5.01 0.00 0.00 2.71
3640 3705 4.379652 GAAAAATTGAAGGCCACACACAT 58.620 39.130 5.01 0.00 0.00 3.21
3641 3706 3.736433 CGAAAAATTGAAGGCCACACACA 60.736 43.478 5.01 0.00 0.00 3.72
3642 3707 2.794350 CGAAAAATTGAAGGCCACACAC 59.206 45.455 5.01 0.00 0.00 3.82
3643 3708 2.690497 TCGAAAAATTGAAGGCCACACA 59.310 40.909 5.01 0.00 0.00 3.72
3644 3709 3.363341 TCGAAAAATTGAAGGCCACAC 57.637 42.857 5.01 0.00 0.00 3.82
3645 3710 4.392921 TTTCGAAAAATTGAAGGCCACA 57.607 36.364 8.44 1.11 0.00 4.17
3661 3726 9.202273 CCATTGGAAAGAATTTTAACATTTCGA 57.798 29.630 0.00 0.00 39.27 3.71
3662 3727 8.987890 ACCATTGGAAAGAATTTTAACATTTCG 58.012 29.630 10.37 0.00 39.27 3.46
3664 3729 9.283768 GGACCATTGGAAAGAATTTTAACATTT 57.716 29.630 10.37 0.00 39.27 2.32
3665 3730 8.659527 AGGACCATTGGAAAGAATTTTAACATT 58.340 29.630 10.37 0.00 39.27 2.71
3666 3731 8.206126 AGGACCATTGGAAAGAATTTTAACAT 57.794 30.769 10.37 0.00 39.27 2.71
3667 3732 7.610580 AGGACCATTGGAAAGAATTTTAACA 57.389 32.000 10.37 0.00 39.27 2.41
3668 3733 8.367911 AGAAGGACCATTGGAAAGAATTTTAAC 58.632 33.333 10.37 0.00 39.27 2.01
3669 3734 8.491045 AGAAGGACCATTGGAAAGAATTTTAA 57.509 30.769 10.37 0.00 39.27 1.52
3670 3735 8.491045 AAGAAGGACCATTGGAAAGAATTTTA 57.509 30.769 10.37 0.00 39.27 1.52
3671 3736 7.379059 AAGAAGGACCATTGGAAAGAATTTT 57.621 32.000 10.37 0.00 39.27 1.82
3672 3737 6.014242 GGAAGAAGGACCATTGGAAAGAATTT 60.014 38.462 10.37 0.00 43.98 1.82
3673 3738 5.481824 GGAAGAAGGACCATTGGAAAGAATT 59.518 40.000 10.37 0.00 0.00 2.17
3674 3739 5.019470 GGAAGAAGGACCATTGGAAAGAAT 58.981 41.667 10.37 0.00 0.00 2.40
3675 3740 4.407365 GGAAGAAGGACCATTGGAAAGAA 58.593 43.478 10.37 0.00 0.00 2.52
3676 3741 3.245264 GGGAAGAAGGACCATTGGAAAGA 60.245 47.826 10.37 0.00 0.00 2.52
3677 3742 3.092301 GGGAAGAAGGACCATTGGAAAG 58.908 50.000 10.37 0.00 0.00 2.62
3678 3743 2.721906 AGGGAAGAAGGACCATTGGAAA 59.278 45.455 10.37 0.00 0.00 3.13
3679 3744 2.358258 AGGGAAGAAGGACCATTGGAA 58.642 47.619 10.37 0.00 0.00 3.53
3680 3745 2.059756 AGGGAAGAAGGACCATTGGA 57.940 50.000 10.37 0.00 0.00 3.53
3681 3746 2.907458 AAGGGAAGAAGGACCATTGG 57.093 50.000 0.00 0.00 0.00 3.16
3682 3747 4.013050 GAGAAAGGGAAGAAGGACCATTG 58.987 47.826 0.00 0.00 30.58 2.82
3683 3748 3.919554 AGAGAAAGGGAAGAAGGACCATT 59.080 43.478 0.00 0.00 0.00 3.16
3684 3749 3.521531 GAGAGAAAGGGAAGAAGGACCAT 59.478 47.826 0.00 0.00 0.00 3.55
3685 3750 2.907042 GAGAGAAAGGGAAGAAGGACCA 59.093 50.000 0.00 0.00 0.00 4.02
3686 3751 2.907042 TGAGAGAAAGGGAAGAAGGACC 59.093 50.000 0.00 0.00 0.00 4.46
3687 3752 4.835284 ATGAGAGAAAGGGAAGAAGGAC 57.165 45.455 0.00 0.00 0.00 3.85
3688 3753 6.026186 AGTTATGAGAGAAAGGGAAGAAGGA 58.974 40.000 0.00 0.00 0.00 3.36
3689 3754 6.306643 AGTTATGAGAGAAAGGGAAGAAGG 57.693 41.667 0.00 0.00 0.00 3.46
3690 3755 6.345298 GGAGTTATGAGAGAAAGGGAAGAAG 58.655 44.000 0.00 0.00 0.00 2.85
3691 3756 5.189934 GGGAGTTATGAGAGAAAGGGAAGAA 59.810 44.000 0.00 0.00 0.00 2.52
3692 3757 4.717280 GGGAGTTATGAGAGAAAGGGAAGA 59.283 45.833 0.00 0.00 0.00 2.87
3693 3758 4.471386 TGGGAGTTATGAGAGAAAGGGAAG 59.529 45.833 0.00 0.00 0.00 3.46
3694 3759 4.225267 GTGGGAGTTATGAGAGAAAGGGAA 59.775 45.833 0.00 0.00 0.00 3.97
3695 3760 3.775316 GTGGGAGTTATGAGAGAAAGGGA 59.225 47.826 0.00 0.00 0.00 4.20
3696 3761 3.777522 AGTGGGAGTTATGAGAGAAAGGG 59.222 47.826 0.00 0.00 0.00 3.95
3697 3762 4.467795 TCAGTGGGAGTTATGAGAGAAAGG 59.532 45.833 0.00 0.00 0.00 3.11
3698 3763 5.667539 TCAGTGGGAGTTATGAGAGAAAG 57.332 43.478 0.00 0.00 0.00 2.62
3699 3764 5.544176 AGTTCAGTGGGAGTTATGAGAGAAA 59.456 40.000 0.00 0.00 0.00 2.52
3700 3765 5.047021 CAGTTCAGTGGGAGTTATGAGAGAA 60.047 44.000 0.00 0.00 0.00 2.87
3701 3766 4.464244 CAGTTCAGTGGGAGTTATGAGAGA 59.536 45.833 0.00 0.00 0.00 3.10
3702 3767 4.753233 CAGTTCAGTGGGAGTTATGAGAG 58.247 47.826 0.00 0.00 0.00 3.20
3703 3768 3.055819 GCAGTTCAGTGGGAGTTATGAGA 60.056 47.826 0.00 0.00 0.00 3.27
3704 3769 3.265791 GCAGTTCAGTGGGAGTTATGAG 58.734 50.000 0.00 0.00 0.00 2.90
3705 3770 2.637382 TGCAGTTCAGTGGGAGTTATGA 59.363 45.455 0.00 0.00 0.00 2.15
3706 3771 3.005554 CTGCAGTTCAGTGGGAGTTATG 58.994 50.000 5.25 0.00 38.02 1.90
3707 3772 2.906389 TCTGCAGTTCAGTGGGAGTTAT 59.094 45.455 14.67 0.00 43.32 1.89
3708 3773 2.325484 TCTGCAGTTCAGTGGGAGTTA 58.675 47.619 14.67 0.00 43.32 2.24
3709 3774 1.131638 TCTGCAGTTCAGTGGGAGTT 58.868 50.000 14.67 0.00 43.32 3.01
3710 3775 1.131638 TTCTGCAGTTCAGTGGGAGT 58.868 50.000 14.67 0.00 43.32 3.85
3711 3776 2.260844 TTTCTGCAGTTCAGTGGGAG 57.739 50.000 14.67 0.00 43.32 4.30
3712 3777 2.886523 CAATTTCTGCAGTTCAGTGGGA 59.113 45.455 14.67 0.00 43.32 4.37
3713 3778 2.886523 TCAATTTCTGCAGTTCAGTGGG 59.113 45.455 14.67 0.00 43.32 4.61
3714 3779 4.572985 TTCAATTTCTGCAGTTCAGTGG 57.427 40.909 14.67 0.00 43.32 4.00
3715 3780 6.890663 TTTTTCAATTTCTGCAGTTCAGTG 57.109 33.333 14.67 8.46 43.32 3.66
3741 3806 9.961264 TTTTTCTTACAACCCACCTTTATTTTT 57.039 25.926 0.00 0.00 0.00 1.94
3779 3844 9.135843 GCTGTGTTTTTATTCCCATAGTAAAAC 57.864 33.333 0.00 0.00 36.52 2.43
3780 3845 8.024285 CGCTGTGTTTTTATTCCCATAGTAAAA 58.976 33.333 0.00 0.00 0.00 1.52
3781 3846 7.390996 TCGCTGTGTTTTTATTCCCATAGTAAA 59.609 33.333 0.00 0.00 0.00 2.01
3782 3847 6.879993 TCGCTGTGTTTTTATTCCCATAGTAA 59.120 34.615 0.00 0.00 0.00 2.24
3783 3848 6.408035 TCGCTGTGTTTTTATTCCCATAGTA 58.592 36.000 0.00 0.00 0.00 1.82
3784 3849 5.250200 TCGCTGTGTTTTTATTCCCATAGT 58.750 37.500 0.00 0.00 0.00 2.12
3785 3850 5.811399 TCGCTGTGTTTTTATTCCCATAG 57.189 39.130 0.00 0.00 0.00 2.23
3786 3851 6.576662 TTTCGCTGTGTTTTTATTCCCATA 57.423 33.333 0.00 0.00 0.00 2.74
3787 3852 5.461032 TTTCGCTGTGTTTTTATTCCCAT 57.539 34.783 0.00 0.00 0.00 4.00
3788 3853 4.920640 TTTCGCTGTGTTTTTATTCCCA 57.079 36.364 0.00 0.00 0.00 4.37
3789 3854 6.779115 AAATTTCGCTGTGTTTTTATTCCC 57.221 33.333 0.00 0.00 0.00 3.97
3793 3858 9.915629 TGGTAATAAATTTCGCTGTGTTTTTAT 57.084 25.926 0.00 0.00 0.00 1.40
3794 3859 9.400638 CTGGTAATAAATTTCGCTGTGTTTTTA 57.599 29.630 0.00 0.00 0.00 1.52
3795 3860 7.923878 ACTGGTAATAAATTTCGCTGTGTTTTT 59.076 29.630 0.00 0.00 0.00 1.94
3796 3861 7.381139 CACTGGTAATAAATTTCGCTGTGTTTT 59.619 33.333 0.00 0.00 0.00 2.43
3797 3862 6.861055 CACTGGTAATAAATTTCGCTGTGTTT 59.139 34.615 0.00 0.00 0.00 2.83
3798 3863 6.016610 ACACTGGTAATAAATTTCGCTGTGTT 60.017 34.615 0.00 0.00 30.98 3.32
3799 3864 5.472137 ACACTGGTAATAAATTTCGCTGTGT 59.528 36.000 0.00 0.00 0.00 3.72
3800 3865 5.938322 ACACTGGTAATAAATTTCGCTGTG 58.062 37.500 0.00 0.00 0.00 3.66
3801 3866 6.569179 AACACTGGTAATAAATTTCGCTGT 57.431 33.333 0.00 0.00 0.00 4.40
3802 3867 7.593273 TGAAAACACTGGTAATAAATTTCGCTG 59.407 33.333 0.00 0.00 0.00 5.18
3803 3868 7.653647 TGAAAACACTGGTAATAAATTTCGCT 58.346 30.769 0.00 0.00 0.00 4.93
3804 3869 7.861176 TGAAAACACTGGTAATAAATTTCGC 57.139 32.000 0.00 0.00 0.00 4.70
3808 3873 9.541884 AGGGTATGAAAACACTGGTAATAAATT 57.458 29.630 0.00 0.00 29.90 1.82
3812 3877 9.452287 GTTTAGGGTATGAAAACACTGGTAATA 57.548 33.333 0.00 0.00 34.19 0.98
3813 3878 7.945664 TGTTTAGGGTATGAAAACACTGGTAAT 59.054 33.333 0.00 0.00 37.99 1.89
3814 3879 7.288560 TGTTTAGGGTATGAAAACACTGGTAA 58.711 34.615 0.00 0.00 37.99 2.85
3815 3880 6.839454 TGTTTAGGGTATGAAAACACTGGTA 58.161 36.000 0.00 0.00 37.99 3.25
3816 3881 5.697067 TGTTTAGGGTATGAAAACACTGGT 58.303 37.500 0.00 0.00 37.99 4.00
3817 3882 5.335661 GCTGTTTAGGGTATGAAAACACTGG 60.336 44.000 0.00 0.00 37.99 4.00
3818 3883 5.240623 TGCTGTTTAGGGTATGAAAACACTG 59.759 40.000 0.00 0.00 37.99 3.66
3819 3884 5.381757 TGCTGTTTAGGGTATGAAAACACT 58.618 37.500 0.00 0.00 37.99 3.55
3820 3885 5.699097 TGCTGTTTAGGGTATGAAAACAC 57.301 39.130 0.00 0.00 37.99 3.32
3821 3886 5.830991 ACTTGCTGTTTAGGGTATGAAAACA 59.169 36.000 0.00 0.00 39.95 2.83
3822 3887 6.327279 ACTTGCTGTTTAGGGTATGAAAAC 57.673 37.500 0.00 0.00 34.45 2.43
3823 3888 7.885922 TGATACTTGCTGTTTAGGGTATGAAAA 59.114 33.333 0.00 0.00 0.00 2.29
3824 3889 7.398829 TGATACTTGCTGTTTAGGGTATGAAA 58.601 34.615 0.00 0.00 0.00 2.69
3825 3890 6.953101 TGATACTTGCTGTTTAGGGTATGAA 58.047 36.000 0.00 0.00 0.00 2.57
3826 3891 6.156256 ACTGATACTTGCTGTTTAGGGTATGA 59.844 38.462 0.00 0.00 0.00 2.15
3827 3892 6.349300 ACTGATACTTGCTGTTTAGGGTATG 58.651 40.000 0.00 0.00 0.00 2.39
3828 3893 6.561519 ACTGATACTTGCTGTTTAGGGTAT 57.438 37.500 0.00 0.00 0.00 2.73
3829 3894 6.368779 AACTGATACTTGCTGTTTAGGGTA 57.631 37.500 0.00 0.00 0.00 3.69
3830 3895 4.910458 ACTGATACTTGCTGTTTAGGGT 57.090 40.909 0.00 0.00 0.00 4.34
3831 3896 6.640518 TCTAACTGATACTTGCTGTTTAGGG 58.359 40.000 0.00 0.00 0.00 3.53
3832 3897 7.168302 CGATCTAACTGATACTTGCTGTTTAGG 59.832 40.741 0.00 0.00 35.14 2.69
3833 3898 7.915923 TCGATCTAACTGATACTTGCTGTTTAG 59.084 37.037 0.00 0.00 35.14 1.85
3834 3899 7.701078 GTCGATCTAACTGATACTTGCTGTTTA 59.299 37.037 0.00 0.00 35.14 2.01
3835 3900 6.531948 GTCGATCTAACTGATACTTGCTGTTT 59.468 38.462 0.00 0.00 35.14 2.83
3836 3901 6.037098 GTCGATCTAACTGATACTTGCTGTT 58.963 40.000 0.00 0.00 35.14 3.16
3837 3902 5.358442 AGTCGATCTAACTGATACTTGCTGT 59.642 40.000 0.00 0.00 35.14 4.40
3838 3903 5.826586 AGTCGATCTAACTGATACTTGCTG 58.173 41.667 0.00 0.00 35.14 4.41
3839 3904 6.067263 GAGTCGATCTAACTGATACTTGCT 57.933 41.667 2.65 0.00 35.14 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.