Multiple sequence alignment - TraesCS3D01G076900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G076900 chr3D 100.000 2375 0 0 1 2375 37627123 37629497 0.000000e+00 4386
1 TraesCS3D01G076900 chr3D 93.530 2303 84 10 1 2298 229427730 229425488 0.000000e+00 3367
2 TraesCS3D01G076900 chr5B 91.506 2331 146 25 1 2298 291681324 291679013 0.000000e+00 3160
3 TraesCS3D01G076900 chr5B 92.371 734 50 6 1567 2298 190333783 190334512 0.000000e+00 1040
4 TraesCS3D01G076900 chr6B 90.573 2355 148 34 1 2298 159276854 159274517 0.000000e+00 3051
5 TraesCS3D01G076900 chr6B 89.818 2357 141 37 1 2298 238422257 238419941 0.000000e+00 2931
6 TraesCS3D01G076900 chr6B 90.800 1674 103 20 1 1650 70651210 70652856 0.000000e+00 2191
7 TraesCS3D01G076900 chr6B 89.490 942 66 22 1382 2299 244346930 244345998 0.000000e+00 1160
8 TraesCS3D01G076900 chr4B 90.110 2356 150 46 1 2298 288454879 288452549 0.000000e+00 2983
9 TraesCS3D01G076900 chr4B 94.132 1653 88 7 1 1650 343834197 343835843 0.000000e+00 2507
10 TraesCS3D01G076900 chr4B 93.427 1430 65 10 1 1423 505003580 505002173 0.000000e+00 2093
11 TraesCS3D01G076900 chr4B 87.885 974 67 22 1369 2298 368730352 368731318 0.000000e+00 1098
12 TraesCS3D01G076900 chr4B 92.769 733 48 5 1567 2298 6841893 6842621 0.000000e+00 1055
13 TraesCS3D01G076900 chr4B 94.382 89 5 0 2287 2375 559881907 559881819 1.140000e-28 137
14 TraesCS3D01G076900 chr4B 97.468 79 2 0 2297 2375 483532178 483532256 4.120000e-28 135
15 TraesCS3D01G076900 chr7B 90.064 2355 138 53 1 2297 713312434 713310118 0.000000e+00 2964
16 TraesCS3D01G076900 chr7B 93.378 891 49 6 541 1423 551235443 551236331 0.000000e+00 1310
17 TraesCS3D01G076900 chr1A 94.241 1719 80 8 1 1710 340070980 340072688 0.000000e+00 2608
18 TraesCS3D01G076900 chr1A 93.846 715 38 6 1589 2302 340072687 340073396 0.000000e+00 1072
19 TraesCS3D01G076900 chr3A 89.105 1799 106 46 547 2299 733879263 733877509 0.000000e+00 2154
20 TraesCS3D01G076900 chr3A 93.978 714 36 7 1586 2298 676004309 676005016 0.000000e+00 1074
21 TraesCS3D01G076900 chr3A 92.717 714 45 6 1586 2298 579909786 579909079 0.000000e+00 1024
22 TraesCS3D01G076900 chr2B 93.433 1401 70 7 1 1399 539886145 539887525 0.000000e+00 2058
23 TraesCS3D01G076900 chr3B 91.119 1430 79 16 1 1423 753431281 753429893 0.000000e+00 1893
24 TraesCS3D01G076900 chr6D 93.262 846 38 12 1 842 446364418 446363588 0.000000e+00 1229
25 TraesCS3D01G076900 chr6D 97.468 79 2 0 2297 2375 188701157 188701079 4.120000e-28 135
26 TraesCS3D01G076900 chr5D 93.365 844 32 10 1 842 384512122 384511301 0.000000e+00 1227
27 TraesCS3D01G076900 chr5D 90.510 843 47 18 1 842 363992435 363991625 0.000000e+00 1083
28 TraesCS3D01G076900 chr5D 92.308 91 5 1 2287 2375 76918238 76918148 6.890000e-26 128
29 TraesCS3D01G076900 chr5D 92.308 91 5 1 2287 2375 76952095 76952005 6.890000e-26 128
30 TraesCS3D01G076900 chr4A 93.128 844 34 10 1 842 433607527 433606706 0.000000e+00 1216
31 TraesCS3D01G076900 chr7D 92.958 852 29 11 1 842 79226586 79227416 0.000000e+00 1212
32 TraesCS3D01G076900 chr1B 91.373 765 50 11 1542 2298 6183038 6183794 0.000000e+00 1033
33 TraesCS3D01G076900 chr1B 89.760 791 62 14 1517 2298 600336405 600335625 0.000000e+00 994
34 TraesCS3D01G076900 chr1B 98.734 79 1 0 2297 2375 370296531 370296609 8.850000e-30 141
35 TraesCS3D01G076900 chr2A 96.929 521 16 0 1 521 15511899 15511379 0.000000e+00 874
36 TraesCS3D01G076900 chrUn 98.701 77 1 0 2299 2375 338551665 338551589 1.140000e-28 137
37 TraesCS3D01G076900 chr2D 98.701 77 1 0 2299 2375 484967252 484967176 1.140000e-28 137
38 TraesCS3D01G076900 chr4D 97.468 79 2 0 2297 2375 140778782 140778704 4.120000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G076900 chr3D 37627123 37629497 2374 False 4386 4386 100.0000 1 2375 1 chr3D.!!$F1 2374
1 TraesCS3D01G076900 chr3D 229425488 229427730 2242 True 3367 3367 93.5300 1 2298 1 chr3D.!!$R1 2297
2 TraesCS3D01G076900 chr5B 291679013 291681324 2311 True 3160 3160 91.5060 1 2298 1 chr5B.!!$R1 2297
3 TraesCS3D01G076900 chr5B 190333783 190334512 729 False 1040 1040 92.3710 1567 2298 1 chr5B.!!$F1 731
4 TraesCS3D01G076900 chr6B 159274517 159276854 2337 True 3051 3051 90.5730 1 2298 1 chr6B.!!$R1 2297
5 TraesCS3D01G076900 chr6B 238419941 238422257 2316 True 2931 2931 89.8180 1 2298 1 chr6B.!!$R2 2297
6 TraesCS3D01G076900 chr6B 70651210 70652856 1646 False 2191 2191 90.8000 1 1650 1 chr6B.!!$F1 1649
7 TraesCS3D01G076900 chr6B 244345998 244346930 932 True 1160 1160 89.4900 1382 2299 1 chr6B.!!$R3 917
8 TraesCS3D01G076900 chr4B 288452549 288454879 2330 True 2983 2983 90.1100 1 2298 1 chr4B.!!$R1 2297
9 TraesCS3D01G076900 chr4B 343834197 343835843 1646 False 2507 2507 94.1320 1 1650 1 chr4B.!!$F2 1649
10 TraesCS3D01G076900 chr4B 505002173 505003580 1407 True 2093 2093 93.4270 1 1423 1 chr4B.!!$R2 1422
11 TraesCS3D01G076900 chr4B 368730352 368731318 966 False 1098 1098 87.8850 1369 2298 1 chr4B.!!$F3 929
12 TraesCS3D01G076900 chr4B 6841893 6842621 728 False 1055 1055 92.7690 1567 2298 1 chr4B.!!$F1 731
13 TraesCS3D01G076900 chr7B 713310118 713312434 2316 True 2964 2964 90.0640 1 2297 1 chr7B.!!$R1 2296
14 TraesCS3D01G076900 chr7B 551235443 551236331 888 False 1310 1310 93.3780 541 1423 1 chr7B.!!$F1 882
15 TraesCS3D01G076900 chr1A 340070980 340073396 2416 False 1840 2608 94.0435 1 2302 2 chr1A.!!$F1 2301
16 TraesCS3D01G076900 chr3A 733877509 733879263 1754 True 2154 2154 89.1050 547 2299 1 chr3A.!!$R2 1752
17 TraesCS3D01G076900 chr3A 676004309 676005016 707 False 1074 1074 93.9780 1586 2298 1 chr3A.!!$F1 712
18 TraesCS3D01G076900 chr3A 579909079 579909786 707 True 1024 1024 92.7170 1586 2298 1 chr3A.!!$R1 712
19 TraesCS3D01G076900 chr2B 539886145 539887525 1380 False 2058 2058 93.4330 1 1399 1 chr2B.!!$F1 1398
20 TraesCS3D01G076900 chr3B 753429893 753431281 1388 True 1893 1893 91.1190 1 1423 1 chr3B.!!$R1 1422
21 TraesCS3D01G076900 chr6D 446363588 446364418 830 True 1229 1229 93.2620 1 842 1 chr6D.!!$R2 841
22 TraesCS3D01G076900 chr5D 384511301 384512122 821 True 1227 1227 93.3650 1 842 1 chr5D.!!$R4 841
23 TraesCS3D01G076900 chr5D 363991625 363992435 810 True 1083 1083 90.5100 1 842 1 chr5D.!!$R3 841
24 TraesCS3D01G076900 chr4A 433606706 433607527 821 True 1216 1216 93.1280 1 842 1 chr4A.!!$R1 841
25 TraesCS3D01G076900 chr7D 79226586 79227416 830 False 1212 1212 92.9580 1 842 1 chr7D.!!$F1 841
26 TraesCS3D01G076900 chr1B 6183038 6183794 756 False 1033 1033 91.3730 1542 2298 1 chr1B.!!$F1 756
27 TraesCS3D01G076900 chr1B 600335625 600336405 780 True 994 994 89.7600 1517 2298 1 chr1B.!!$R1 781
28 TraesCS3D01G076900 chr2A 15511379 15511899 520 True 874 874 96.9290 1 521 1 chr2A.!!$R1 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
112 113 1.123928 GGAGATGTGGTCTACCCCAG 58.876 60.0 0.0 0.0 37.29 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2079 2538 0.172578 TGGTCACTAGCAATCCGACG 59.827 55.0 0.0 0.0 0.0 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 113 1.123928 GGAGATGTGGTCTACCCCAG 58.876 60.000 0.00 0.00 37.29 4.45
189 190 2.502947 AGGTGCTAGATCATGCTGACAA 59.497 45.455 10.52 0.00 0.00 3.18
359 361 9.922305 CCTCGTTGAATAACATTTCTAATTCTC 57.078 33.333 0.00 0.00 36.58 2.87
543 555 9.589111 TTTGTTCAAACTTTTGTATAGAAACCC 57.411 29.630 0.00 0.00 39.18 4.11
574 606 2.156917 TGATTCACAGCCAGCTTTGAG 58.843 47.619 8.38 0.00 34.72 3.02
800 872 4.762289 AGAACCACCATTCTAGGCTTAG 57.238 45.455 0.00 0.00 37.16 2.18
856 929 4.202202 CCAGGTCACTAGTCATCATCTTCC 60.202 50.000 0.00 0.00 0.00 3.46
864 937 8.221251 TCACTAGTCATCATCTTCCTGTATAGT 58.779 37.037 0.00 0.00 0.00 2.12
928 1001 2.884639 GCTGGTTTGGTTTCTCTTGCTA 59.115 45.455 0.00 0.00 0.00 3.49
1125 1198 1.304052 CGGGAATGTTGGGCTCCAA 60.304 57.895 2.84 2.84 41.69 3.53
1290 1378 2.482374 GCTGCATGCGACAAGGAC 59.518 61.111 14.09 0.00 0.00 3.85
1300 1388 0.318441 CGACAAGGACCTTGAGCTGA 59.682 55.000 35.69 0.00 43.42 4.26
1317 1405 1.659601 CTGATGCGCAAGAAGTCTCAG 59.340 52.381 17.11 17.40 43.02 3.35
1389 1541 5.105756 GGTAGTTTGATGGCTATGCAGTTTT 60.106 40.000 0.00 0.00 0.00 2.43
1452 1654 0.393537 GATGGCTGTGAACCTGGGAG 60.394 60.000 0.00 0.00 0.00 4.30
1453 1655 2.360475 GGCTGTGAACCTGGGAGC 60.360 66.667 0.00 0.00 0.00 4.70
1454 1656 2.431683 GCTGTGAACCTGGGAGCA 59.568 61.111 0.00 0.00 0.00 4.26
1455 1657 1.001641 GCTGTGAACCTGGGAGCAT 60.002 57.895 0.00 0.00 0.00 3.79
1456 1658 0.610232 GCTGTGAACCTGGGAGCATT 60.610 55.000 0.00 0.00 0.00 3.56
1457 1659 1.915141 CTGTGAACCTGGGAGCATTT 58.085 50.000 0.00 0.00 0.00 2.32
1458 1660 2.242043 CTGTGAACCTGGGAGCATTTT 58.758 47.619 0.00 0.00 0.00 1.82
1459 1661 3.420893 CTGTGAACCTGGGAGCATTTTA 58.579 45.455 0.00 0.00 0.00 1.52
1460 1662 4.019174 CTGTGAACCTGGGAGCATTTTAT 58.981 43.478 0.00 0.00 0.00 1.40
1461 1663 4.415596 TGTGAACCTGGGAGCATTTTATT 58.584 39.130 0.00 0.00 0.00 1.40
1499 1711 2.703536 TGTCTTTGGAGCTGTGAACCTA 59.296 45.455 0.00 0.00 0.00 3.08
1506 1718 2.691011 GGAGCTGTGAACCTAGGAGTAG 59.309 54.545 17.98 7.29 0.00 2.57
1604 1915 7.379529 GTGATCTTGTGAACCTGTGTTTATTTG 59.620 37.037 0.00 0.00 33.97 2.32
1969 2428 5.885449 TTAAATGGGCTGAATTATTGGGG 57.115 39.130 0.00 0.00 0.00 4.96
2059 2518 3.058160 GCCACGTCAGCTTGCCAT 61.058 61.111 0.00 0.00 0.00 4.40
2193 2654 0.734942 ATGTCAGTTTACGACGGCCG 60.735 55.000 26.86 26.86 45.44 6.13
2302 2764 6.726258 TGACATATTTCTTGCAGTGTGTAG 57.274 37.500 0.00 0.00 0.00 2.74
2303 2765 5.122239 TGACATATTTCTTGCAGTGTGTAGC 59.878 40.000 0.00 0.00 0.00 3.58
2304 2766 4.396166 ACATATTTCTTGCAGTGTGTAGCC 59.604 41.667 0.00 0.00 0.00 3.93
2305 2767 2.340210 TTTCTTGCAGTGTGTAGCCA 57.660 45.000 0.00 0.00 0.00 4.75
2306 2768 1.593196 TTCTTGCAGTGTGTAGCCAC 58.407 50.000 0.00 0.00 42.19 5.01
2307 2769 0.250295 TCTTGCAGTGTGTAGCCACC 60.250 55.000 0.00 0.00 41.09 4.61
2308 2770 0.534877 CTTGCAGTGTGTAGCCACCA 60.535 55.000 0.00 0.00 41.09 4.17
2309 2771 0.106967 TTGCAGTGTGTAGCCACCAA 60.107 50.000 0.00 0.00 41.09 3.67
2310 2772 0.106967 TGCAGTGTGTAGCCACCAAA 60.107 50.000 0.00 0.00 41.09 3.28
2311 2773 1.028905 GCAGTGTGTAGCCACCAAAA 58.971 50.000 0.00 0.00 41.09 2.44
2312 2774 1.407258 GCAGTGTGTAGCCACCAAAAA 59.593 47.619 0.00 0.00 41.09 1.94
2313 2775 2.798145 GCAGTGTGTAGCCACCAAAAAC 60.798 50.000 0.00 0.00 41.09 2.43
2314 2776 2.028876 AGTGTGTAGCCACCAAAAACC 58.971 47.619 0.00 0.00 41.09 3.27
2315 2777 1.751924 GTGTGTAGCCACCAAAAACCA 59.248 47.619 0.00 0.00 41.09 3.67
2316 2778 2.166664 GTGTGTAGCCACCAAAAACCAA 59.833 45.455 0.00 0.00 41.09 3.67
2317 2779 3.034635 TGTGTAGCCACCAAAAACCAAT 58.965 40.909 0.00 0.00 41.09 3.16
2318 2780 3.068873 TGTGTAGCCACCAAAAACCAATC 59.931 43.478 0.00 0.00 41.09 2.67
2319 2781 2.294791 TGTAGCCACCAAAAACCAATCG 59.705 45.455 0.00 0.00 0.00 3.34
2320 2782 0.678950 AGCCACCAAAAACCAATCGG 59.321 50.000 0.00 0.00 38.77 4.18
2321 2783 0.320334 GCCACCAAAAACCAATCGGG 60.320 55.000 0.00 0.00 44.81 5.14
2322 2784 1.333177 CCACCAAAAACCAATCGGGA 58.667 50.000 0.00 0.00 41.15 5.14
2323 2785 1.000394 CCACCAAAAACCAATCGGGAC 60.000 52.381 0.00 0.00 41.15 4.46
2324 2786 1.000394 CACCAAAAACCAATCGGGACC 60.000 52.381 0.00 0.00 41.15 4.46
2325 2787 0.606096 CCAAAAACCAATCGGGACCC 59.394 55.000 0.00 0.00 41.15 4.46
2326 2788 1.627864 CAAAAACCAATCGGGACCCT 58.372 50.000 9.41 0.00 41.15 4.34
2327 2789 1.272212 CAAAAACCAATCGGGACCCTG 59.728 52.381 9.41 0.00 41.15 4.45
2328 2790 0.481128 AAAACCAATCGGGACCCTGT 59.519 50.000 9.41 0.00 41.15 4.00
2329 2791 0.481128 AAACCAATCGGGACCCTGTT 59.519 50.000 9.41 0.00 41.15 3.16
2330 2792 0.037734 AACCAATCGGGACCCTGTTC 59.962 55.000 9.41 0.00 41.15 3.18
2331 2793 1.077716 CCAATCGGGACCCTGTTCC 60.078 63.158 9.41 0.00 40.01 3.62
2336 2798 4.717313 GGGACCCTGTTCCGGCAC 62.717 72.222 2.09 0.00 36.38 5.01
2337 2799 4.717313 GGACCCTGTTCCGGCACC 62.717 72.222 0.56 0.00 0.00 5.01
2338 2800 4.717313 GACCCTGTTCCGGCACCC 62.717 72.222 0.56 0.00 0.00 4.61
2340 2802 4.722700 CCCTGTTCCGGCACCCTG 62.723 72.222 0.56 0.00 0.00 4.45
2368 2830 1.904771 TGATCCATCACCGGTGTCC 59.095 57.895 32.74 16.54 0.00 4.02
2369 2831 0.907230 TGATCCATCACCGGTGTCCA 60.907 55.000 32.74 15.85 0.00 4.02
2370 2832 0.469917 GATCCATCACCGGTGTCCAT 59.530 55.000 32.74 17.52 0.00 3.41
2371 2833 0.469917 ATCCATCACCGGTGTCCATC 59.530 55.000 32.74 0.00 0.00 3.51
2372 2834 0.617535 TCCATCACCGGTGTCCATCT 60.618 55.000 32.74 10.11 0.00 2.90
2373 2835 0.253044 CCATCACCGGTGTCCATCTT 59.747 55.000 32.74 8.59 0.00 2.40
2374 2836 1.656652 CATCACCGGTGTCCATCTTC 58.343 55.000 32.74 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
359 361 9.094459 CAACAAAAATCAAAATGTTATTCAGCG 57.906 29.630 0.00 0.00 34.45 5.18
543 555 2.360165 GCTGTGAATCAAATAGGGCTGG 59.640 50.000 0.00 0.00 0.00 4.85
574 606 4.559153 AGCATCAAACAGCATAAACAACC 58.441 39.130 0.00 0.00 0.00 3.77
731 803 5.065218 GCCGATCATCAAACTAACATTCAGT 59.935 40.000 0.00 0.00 0.00 3.41
856 929 5.689383 ACCAGCACACAAAAACTATACAG 57.311 39.130 0.00 0.00 0.00 2.74
864 937 3.409026 AACCAAACCAGCACACAAAAA 57.591 38.095 0.00 0.00 0.00 1.94
904 977 2.689983 CAAGAGAAACCAAACCAGCACT 59.310 45.455 0.00 0.00 0.00 4.40
928 1001 4.213564 TCACATTTTGCAAACCAAACCT 57.786 36.364 12.39 0.00 42.81 3.50
1125 1198 2.103263 GCCGGAGTTGTTCCTAGATGAT 59.897 50.000 5.05 0.00 44.41 2.45
1168 1256 2.868044 GCTCAAGGTCACGAACATGAGT 60.868 50.000 16.27 0.00 41.69 3.41
1290 1378 3.582148 TTGCGCATCAGCTCAAGG 58.418 55.556 12.75 0.00 40.27 3.61
1300 1388 0.610174 TCCTGAGACTTCTTGCGCAT 59.390 50.000 12.75 0.00 0.00 4.73
1317 1405 2.419436 GGCTAACTTCTCTTCCTGCTCC 60.419 54.545 0.00 0.00 0.00 4.70
1389 1541 6.321181 ACAAACTGCATAAGAGGTTCAAAGAA 59.679 34.615 0.00 0.00 0.00 2.52
1499 1711 3.248024 TCACACCCATCAAACTACTCCT 58.752 45.455 0.00 0.00 0.00 3.69
1506 1718 1.613437 CCAGGTTCACACCCATCAAAC 59.387 52.381 0.00 0.00 45.63 2.93
1604 1915 2.221169 TGATCCACACAACTTCACAGC 58.779 47.619 0.00 0.00 0.00 4.40
1969 2428 2.112815 GCCGTCTACATGGGCCAAC 61.113 63.158 11.89 1.99 41.01 3.77
2059 2518 1.376086 CACCATGTCAGAGCCACCA 59.624 57.895 0.00 0.00 0.00 4.17
2079 2538 0.172578 TGGTCACTAGCAATCCGACG 59.827 55.000 0.00 0.00 0.00 5.12
2302 2764 0.320334 CCCGATTGGTTTTTGGTGGC 60.320 55.000 0.00 0.00 0.00 5.01
2303 2765 1.000394 GTCCCGATTGGTTTTTGGTGG 60.000 52.381 0.00 0.00 34.77 4.61
2304 2766 1.000394 GGTCCCGATTGGTTTTTGGTG 60.000 52.381 0.00 0.00 34.77 4.17
2305 2767 1.334160 GGTCCCGATTGGTTTTTGGT 58.666 50.000 0.00 0.00 34.77 3.67
2306 2768 0.606096 GGGTCCCGATTGGTTTTTGG 59.394 55.000 0.00 0.00 34.77 3.28
2307 2769 1.272212 CAGGGTCCCGATTGGTTTTTG 59.728 52.381 0.99 0.00 34.77 2.44
2308 2770 1.133294 ACAGGGTCCCGATTGGTTTTT 60.133 47.619 0.99 0.00 34.77 1.94
2309 2771 0.481128 ACAGGGTCCCGATTGGTTTT 59.519 50.000 0.99 0.00 34.77 2.43
2310 2772 0.481128 AACAGGGTCCCGATTGGTTT 59.519 50.000 0.99 0.00 34.77 3.27
2311 2773 0.037734 GAACAGGGTCCCGATTGGTT 59.962 55.000 0.99 3.59 34.77 3.67
2312 2774 1.683441 GAACAGGGTCCCGATTGGT 59.317 57.895 0.99 0.00 34.77 3.67
2313 2775 1.077716 GGAACAGGGTCCCGATTGG 60.078 63.158 0.99 0.00 0.00 3.16
2314 2776 1.449601 CGGAACAGGGTCCCGATTG 60.450 63.158 0.99 0.00 45.58 2.67
2315 2777 2.666098 CCGGAACAGGGTCCCGATT 61.666 63.158 0.99 0.15 45.58 3.34
2316 2778 3.081409 CCGGAACAGGGTCCCGAT 61.081 66.667 0.99 0.00 45.58 4.18
2319 2781 4.717313 GTGCCGGAACAGGGTCCC 62.717 72.222 8.05 0.00 33.74 4.46
2320 2782 4.717313 GGTGCCGGAACAGGGTCC 62.717 72.222 16.38 0.00 0.00 4.46
2321 2783 4.717313 GGGTGCCGGAACAGGGTC 62.717 72.222 16.38 0.00 0.00 4.46
2323 2785 4.722700 CAGGGTGCCGGAACAGGG 62.723 72.222 16.38 0.00 0.00 4.45
2337 2799 3.866582 GATCACCCCTCCGGCAGG 61.867 72.222 11.75 11.75 43.01 4.85
2338 2800 3.866582 GGATCACCCCTCCGGCAG 61.867 72.222 0.00 0.00 33.26 4.85
2339 2801 4.731853 TGGATCACCCCTCCGGCA 62.732 66.667 0.00 0.00 35.41 5.69
2340 2802 3.171388 ATGGATCACCCCTCCGGC 61.171 66.667 0.00 0.00 35.41 6.13
2341 2803 1.766059 TGATGGATCACCCCTCCGG 60.766 63.158 0.00 0.00 35.41 5.14
2342 2804 3.970332 TGATGGATCACCCCTCCG 58.030 61.111 0.00 0.00 35.41 4.63
2350 2812 0.907230 TGGACACCGGTGATGGATCA 60.907 55.000 40.21 22.59 0.00 2.92
2351 2813 0.469917 ATGGACACCGGTGATGGATC 59.530 55.000 40.21 25.45 0.00 3.36
2352 2814 0.469917 GATGGACACCGGTGATGGAT 59.530 55.000 40.21 23.85 0.00 3.41
2353 2815 0.617535 AGATGGACACCGGTGATGGA 60.618 55.000 40.21 20.39 0.00 3.41
2354 2816 0.253044 AAGATGGACACCGGTGATGG 59.747 55.000 40.21 15.35 0.00 3.51
2355 2817 1.656652 GAAGATGGACACCGGTGATG 58.343 55.000 40.21 15.82 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.