Multiple sequence alignment - TraesCS3D01G076300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G076300 chr3D 100.000 4854 0 0 1 4854 36975544 36980397 0.000000e+00 8964.0
1 TraesCS3D01G076300 chr3D 83.784 111 18 0 4427 4537 496103774 496103884 6.640000e-19 106.0
2 TraesCS3D01G076300 chr3A 91.074 4302 289 39 135 4392 47246012 47250262 0.000000e+00 5729.0
3 TraesCS3D01G076300 chr3A 82.857 105 16 2 4428 4531 340284565 340284668 5.170000e-15 93.5
4 TraesCS3D01G076300 chr3A 91.045 67 3 2 4791 4854 31681684 31681750 2.410000e-13 87.9
5 TraesCS3D01G076300 chr3B 91.256 4060 254 39 101 4117 59430400 59434401 0.000000e+00 5437.0
6 TraesCS3D01G076300 chr3B 80.574 767 134 9 4 761 753267455 753268215 1.170000e-160 577.0
7 TraesCS3D01G076300 chr3B 90.523 306 26 3 4387 4689 59434565 59434870 7.570000e-108 401.0
8 TraesCS3D01G076300 chr3B 90.148 203 17 2 4191 4392 59434425 59434625 1.340000e-65 261.0
9 TraesCS3D01G076300 chr3B 87.179 78 2 6 4785 4854 698231144 698231067 1.120000e-11 82.4
10 TraesCS3D01G076300 chr3B 83.333 90 5 7 4775 4854 435967769 435967680 1.870000e-09 75.0
11 TraesCS3D01G076300 chr2A 80.435 782 133 15 4 776 459549459 459548689 3.260000e-161 579.0
12 TraesCS3D01G076300 chr2A 84.615 104 15 1 4434 4537 504328030 504327928 8.600000e-18 102.0
13 TraesCS3D01G076300 chr1B 81.513 714 121 8 10 714 600980478 600979767 1.170000e-160 577.0
14 TraesCS3D01G076300 chr1B 87.736 106 11 2 4121 4225 511444551 511444655 6.600000e-24 122.0
15 TraesCS3D01G076300 chr1B 88.542 96 9 2 4121 4214 610355110 610355015 1.100000e-21 115.0
16 TraesCS3D01G076300 chr5B 80.311 772 136 12 3 765 538045449 538044685 1.960000e-158 569.0
17 TraesCS3D01G076300 chr5B 94.286 35 0 2 4083 4117 596326153 596326185 9.000000e-03 52.8
18 TraesCS3D01G076300 chr5B 94.286 35 0 2 4083 4117 596351395 596351427 9.000000e-03 52.8
19 TraesCS3D01G076300 chr5B 94.286 35 0 2 4083 4117 596386347 596386379 9.000000e-03 52.8
20 TraesCS3D01G076300 chr5B 100.000 28 0 0 4090 4117 596722143 596722116 9.000000e-03 52.8
21 TraesCS3D01G076300 chr7D 80.152 791 127 17 4 783 636717670 636716899 9.120000e-157 564.0
22 TraesCS3D01G076300 chr7D 87.000 100 13 0 4121 4220 413545592 413545691 3.970000e-21 113.0
23 TraesCS3D01G076300 chr7D 84.071 113 14 4 4426 4537 147011593 147011702 6.640000e-19 106.0
24 TraesCS3D01G076300 chr7D 85.000 100 15 0 4427 4526 194474034 194473935 8.600000e-18 102.0
25 TraesCS3D01G076300 chr7D 87.500 72 1 6 4791 4854 602823693 602823764 5.210000e-10 76.8
26 TraesCS3D01G076300 chr6B 79.924 792 140 15 4 785 706516618 706517400 9.120000e-157 564.0
27 TraesCS3D01G076300 chr6B 94.444 36 2 0 4082 4117 632563178 632563213 6.790000e-04 56.5
28 TraesCS3D01G076300 chr6A 79.405 840 134 26 4 825 158307292 158306474 1.530000e-154 556.0
29 TraesCS3D01G076300 chr1D 87.273 110 12 2 4117 4225 381306988 381307096 1.830000e-24 124.0
30 TraesCS3D01G076300 chr1D 87.838 74 1 2 4789 4854 302891686 302891759 4.030000e-11 80.5
31 TraesCS3D01G076300 chr1D 87.500 72 1 5 4791 4854 318585626 318585697 5.210000e-10 76.8
32 TraesCS3D01G076300 chr1A 87.850 107 11 2 4120 4225 481924420 481924525 1.830000e-24 124.0
33 TraesCS3D01G076300 chr1A 88.660 97 11 0 4121 4217 481924517 481924421 8.530000e-23 119.0
34 TraesCS3D01G076300 chr7B 86.869 99 11 2 4121 4218 327453233 327453136 5.140000e-20 110.0
35 TraesCS3D01G076300 chr7B 81.250 112 19 2 4426 4537 109938568 109938677 6.690000e-14 89.8
36 TraesCS3D01G076300 chr4D 86.869 99 11 2 4121 4218 210457864 210457767 5.140000e-20 110.0
37 TraesCS3D01G076300 chr5D 84.762 105 16 0 4433 4537 315228505 315228609 6.640000e-19 106.0
38 TraesCS3D01G076300 chr5D 100.000 30 0 0 4088 4117 29498215 29498186 6.790000e-04 56.5
39 TraesCS3D01G076300 chr7A 82.143 112 18 2 4426 4537 148491781 148491890 1.440000e-15 95.3
40 TraesCS3D01G076300 chr2D 86.486 74 2 5 4789 4854 65561195 65561268 1.870000e-09 75.0
41 TraesCS3D01G076300 chr2D 86.486 74 2 6 4789 4854 392635226 392635299 1.870000e-09 75.0
42 TraesCS3D01G076300 chr2B 88.235 68 1 5 4789 4854 451530087 451530149 1.870000e-09 75.0
43 TraesCS3D01G076300 chr6D 89.362 47 3 2 4072 4117 53670062 53670107 1.890000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G076300 chr3D 36975544 36980397 4853 False 8964 8964 100.000000 1 4854 1 chr3D.!!$F1 4853
1 TraesCS3D01G076300 chr3A 47246012 47250262 4250 False 5729 5729 91.074000 135 4392 1 chr3A.!!$F2 4257
2 TraesCS3D01G076300 chr3B 59430400 59434870 4470 False 2033 5437 90.642333 101 4689 3 chr3B.!!$F2 4588
3 TraesCS3D01G076300 chr3B 753267455 753268215 760 False 577 577 80.574000 4 761 1 chr3B.!!$F1 757
4 TraesCS3D01G076300 chr2A 459548689 459549459 770 True 579 579 80.435000 4 776 1 chr2A.!!$R1 772
5 TraesCS3D01G076300 chr1B 600979767 600980478 711 True 577 577 81.513000 10 714 1 chr1B.!!$R1 704
6 TraesCS3D01G076300 chr5B 538044685 538045449 764 True 569 569 80.311000 3 765 1 chr5B.!!$R1 762
7 TraesCS3D01G076300 chr7D 636716899 636717670 771 True 564 564 80.152000 4 783 1 chr7D.!!$R2 779
8 TraesCS3D01G076300 chr6B 706516618 706517400 782 False 564 564 79.924000 4 785 1 chr6B.!!$F2 781
9 TraesCS3D01G076300 chr6A 158306474 158307292 818 True 556 556 79.405000 4 825 1 chr6A.!!$R1 821

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
278 294 0.260230 ACACCCCAAACACACCATCA 59.740 50.000 0.00 0.00 0.00 3.07 F
727 753 0.321671 ACCACCAATGACTGAGGTCG 59.678 55.000 0.00 0.00 44.83 4.79 F
2113 2170 1.078848 CACCTGCCGGAGAGAAAGG 60.079 63.158 5.05 3.79 0.00 3.11 F
2209 2266 1.607148 AGCTTCGCCAAGTTGGTAAAC 59.393 47.619 22.85 12.72 40.46 2.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2133 2190 1.770110 ACACTGGGCAGGAAGGTGA 60.770 57.895 0.0 0.0 0.0 4.02 R
2336 2393 0.250038 TCTCACAAGCACCACAGAGC 60.250 55.000 0.0 0.0 0.0 4.09 R
2923 2994 0.531974 TGCTGAACTCCGTGACAACC 60.532 55.000 0.0 0.0 0.0 3.77 R
4117 4212 0.465097 TTAGGACGGAGGGAGTAGCG 60.465 60.000 0.0 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.269051 ACGCTAACCTTTGCACAAAGC 60.269 47.619 16.04 5.89 44.76 3.51
45 49 4.694982 ACAAAGCAAAACCAACCAAGAAAG 59.305 37.500 0.00 0.00 0.00 2.62
47 51 4.817318 AGCAAAACCAACCAAGAAAGAA 57.183 36.364 0.00 0.00 0.00 2.52
91 95 2.438021 TCTAAGCTTGACACCAACACCT 59.562 45.455 9.86 0.00 0.00 4.00
98 102 0.655733 GACACCAACACCTGTCAACG 59.344 55.000 0.00 0.00 37.36 4.10
124 128 2.898840 CGCCACCATAGCAGCCAG 60.899 66.667 0.00 0.00 0.00 4.85
175 181 2.259818 CGAGCTCGGTGCAACTCT 59.740 61.111 28.40 0.00 45.94 3.24
180 186 1.276421 AGCTCGGTGCAACTCTATTGT 59.724 47.619 0.00 0.00 45.94 2.71
196 202 6.600822 ACTCTATTGTTGATATGCAGCTTTGT 59.399 34.615 0.00 0.00 0.00 2.83
253 262 6.652481 CCATCACTGTTGAATATATCAGACCC 59.348 42.308 6.24 0.00 39.77 4.46
256 265 4.899457 ACTGTTGAATATATCAGACCCGGA 59.101 41.667 0.73 0.00 39.77 5.14
267 283 3.097830 ACCCGGACAACACCCCAA 61.098 61.111 0.73 0.00 0.00 4.12
278 294 0.260230 ACACCCCAAACACACCATCA 59.740 50.000 0.00 0.00 0.00 3.07
289 305 5.443185 AACACACCATCAAACTTCAGATG 57.557 39.130 0.00 0.00 40.94 2.90
333 349 4.188247 TGTCAGAGGAGAAAACCATACG 57.812 45.455 0.00 0.00 0.00 3.06
348 364 0.454600 ATACGTGCCATCGACGAACT 59.545 50.000 0.00 0.00 39.21 3.01
366 382 4.142902 CGAACTATGAACCCAACACATGAC 60.143 45.833 0.00 0.00 0.00 3.06
373 389 1.178534 CCCAACACATGACCCACCAC 61.179 60.000 0.00 0.00 0.00 4.16
412 428 2.414994 CAGACCACAATCTGCATCCT 57.585 50.000 0.00 0.00 39.77 3.24
416 432 3.009916 AGACCACAATCTGCATCCTCTTT 59.990 43.478 0.00 0.00 0.00 2.52
434 451 0.555769 TTTGGACACCTCCCAAGCTT 59.444 50.000 0.00 0.00 43.72 3.74
461 479 2.594962 CGCTGGAGCAAACGTCGTT 61.595 57.895 4.40 4.40 42.21 3.85
478 497 3.171828 TTGAACGGCAGGGCTCGAA 62.172 57.895 6.19 0.00 0.00 3.71
522 544 2.124901 CCGCCACGCCATCCTTAA 60.125 61.111 0.00 0.00 0.00 1.85
530 552 3.381272 CCACGCCATCCTTAATTGAACAT 59.619 43.478 0.00 0.00 0.00 2.71
556 578 4.657969 TGGTTTTCAAATTCATCCCCAACT 59.342 37.500 0.00 0.00 0.00 3.16
637 660 0.368227 CATCGCTGAAGCAAGACGAC 59.632 55.000 2.79 0.00 42.21 4.34
672 696 5.771153 AATCTAGGCTACGAAGACCTAAC 57.229 43.478 0.00 0.00 33.71 2.34
681 705 2.182825 CGAAGACCTAACAACGATCCG 58.817 52.381 0.00 0.00 0.00 4.18
700 726 1.442769 GCATGCGTGGATCCGATAAT 58.557 50.000 7.39 0.00 0.00 1.28
725 751 1.349026 CTCACCACCAATGACTGAGGT 59.651 52.381 0.00 0.00 34.64 3.85
726 752 1.347707 TCACCACCAATGACTGAGGTC 59.652 52.381 0.00 0.00 42.42 3.85
727 753 0.321671 ACCACCAATGACTGAGGTCG 59.678 55.000 0.00 0.00 44.83 4.79
728 754 0.321671 CCACCAATGACTGAGGTCGT 59.678 55.000 0.00 0.00 44.83 4.34
800 826 2.672996 ACTGCCGCAAAATCGCCT 60.673 55.556 0.00 0.00 0.00 5.52
841 867 1.741327 AAGAGTGTGGTACGGTGCGT 61.741 55.000 0.00 0.00 44.35 5.24
877 903 3.800685 TTGCCGAGACACGTGGTGG 62.801 63.158 21.57 15.84 37.94 4.61
883 909 2.665185 GACACGTGGTGGCCTGAC 60.665 66.667 21.57 0.00 35.14 3.51
1489 1531 2.111077 CCCTTTCCCCTTTCCCTTTACA 59.889 50.000 0.00 0.00 0.00 2.41
1490 1532 3.245984 CCCTTTCCCCTTTCCCTTTACAT 60.246 47.826 0.00 0.00 0.00 2.29
1534 1576 5.055812 TCCTCATTTGTTGGAAATTGTTGC 58.944 37.500 0.00 0.00 0.00 4.17
1593 1635 8.405531 CAGTCGAAATAAATGTGATAATTGGGT 58.594 33.333 0.00 0.00 0.00 4.51
1602 1645 3.008594 TGTGATAATTGGGTTCACTCGGT 59.991 43.478 11.44 0.00 40.29 4.69
1619 1662 6.310467 TCACTCGGTTTAAAATTCTCATCTCG 59.690 38.462 0.00 0.00 0.00 4.04
1681 1731 6.655003 TCAGGTATCTGTCTGAAATTGGAAAC 59.345 38.462 2.20 0.00 41.59 2.78
1771 1824 1.449246 GCTCCTGAGCGCAGTGATT 60.449 57.895 16.62 0.00 45.29 2.57
1865 1918 7.322664 GGATTGCCATTTGTCTCAAAAGATTA 58.677 34.615 0.00 0.00 33.08 1.75
1868 1921 7.994425 TGCCATTTGTCTCAAAAGATTACTA 57.006 32.000 0.00 0.00 33.08 1.82
1998 2055 3.380004 CGGCACTTGTTCTAGAGAGAGAT 59.620 47.826 6.80 0.00 31.77 2.75
2013 2070 6.008960 AGAGAGAGATTTGTTTGGAAAGCAT 58.991 36.000 0.00 0.00 36.76 3.79
2022 2079 3.763360 TGTTTGGAAAGCATCATGGGTAG 59.237 43.478 0.00 0.00 29.84 3.18
2085 2142 5.130975 AGTTGTCTGCATCATGGGTATCTAA 59.869 40.000 0.00 0.00 0.00 2.10
2113 2170 1.078848 CACCTGCCGGAGAGAAAGG 60.079 63.158 5.05 3.79 0.00 3.11
2121 2178 2.869237 GCCGGAGAGAAAGGTACGTTTT 60.869 50.000 14.28 4.51 0.00 2.43
2133 2190 4.011698 AGGTACGTTTTGGAAACACACTT 58.988 39.130 0.00 0.00 42.67 3.16
2209 2266 1.607148 AGCTTCGCCAAGTTGGTAAAC 59.393 47.619 22.85 12.72 40.46 2.01
2218 2275 3.146847 CAAGTTGGTAAACCCCAGAGAC 58.853 50.000 0.00 0.00 36.94 3.36
2228 2285 4.678538 AACCCCAGAGACTACTTACTCT 57.321 45.455 0.00 0.00 43.13 3.24
2339 2396 4.767255 CCCGTGCCCTCTGTGCTC 62.767 72.222 0.00 0.00 0.00 4.26
2340 2397 3.699894 CCGTGCCCTCTGTGCTCT 61.700 66.667 0.00 0.00 0.00 4.09
2341 2398 2.433838 CGTGCCCTCTGTGCTCTG 60.434 66.667 0.00 0.00 0.00 3.35
2455 2512 1.676014 CGGTGATTGGGACAGGTTCTC 60.676 57.143 0.00 0.00 42.39 2.87
2473 2530 5.279506 GGTTCTCTGTGATGTTTGTCCTAGA 60.280 44.000 0.00 0.00 0.00 2.43
2563 2630 6.147581 TGTTCGTGACTATGTAAGAACACTC 58.852 40.000 4.93 0.00 41.70 3.51
2584 2651 6.535508 CACTCTGGTCCTATAACTTTTACTGC 59.464 42.308 0.00 0.00 0.00 4.40
2611 2678 5.823045 AGATATAAAACCTGCTGCTGGTAAC 59.177 40.000 28.10 13.08 34.63 2.50
2628 2695 4.095782 TGGTAACTTGCTGACAAACTGAAC 59.904 41.667 0.00 0.00 34.74 3.18
2643 2710 9.683069 GACAAACTGAACAACAATCATATTTCT 57.317 29.630 0.00 0.00 0.00 2.52
2665 2732 7.496529 TCTTTGTTCAGTGGTTATCTTTCTG 57.503 36.000 0.00 0.00 0.00 3.02
2669 2736 4.623932 TCAGTGGTTATCTTTCTGTGCT 57.376 40.909 0.00 0.00 0.00 4.40
2784 2855 3.502211 GCTAATGTTGGCTACTGTTGTGT 59.498 43.478 0.01 0.00 0.00 3.72
2800 2871 7.214381 ACTGTTGTGTACTTTCAGCATTACTA 58.786 34.615 0.00 0.00 0.00 1.82
2824 2895 2.863809 CTTACTGCTTGGGGAACACTT 58.136 47.619 0.00 0.00 0.00 3.16
2923 2994 0.025001 CGGAAGTTGTAAGCGATGCG 59.975 55.000 0.00 0.00 0.00 4.73
3177 3248 5.039333 CCTTCTTGTCAAAAGCTCTTTGTG 58.961 41.667 16.01 0.00 32.36 3.33
3190 3261 0.109132 CTTTGTGGGCCAATCTTCGC 60.109 55.000 8.40 0.00 31.81 4.70
3352 3423 3.371102 TCATCGATCATCGGTCTTTCC 57.629 47.619 7.33 0.00 40.88 3.13
3382 3453 1.178276 GACAGGTCATGGTCGTCTCT 58.822 55.000 0.00 0.00 0.00 3.10
3404 3475 1.183676 AACCGTCCTCTACAACCGCT 61.184 55.000 0.00 0.00 0.00 5.52
3418 3489 4.589908 ACAACCGCTATCTCAAAAGGATT 58.410 39.130 0.00 0.00 0.00 3.01
3478 3549 3.793775 TTTCGCGGTGCTGTCGGAA 62.794 57.895 6.13 0.00 0.00 4.30
3509 3580 3.821033 GGTGAAGCAAGTGAACCTTATGT 59.179 43.478 0.00 0.00 0.00 2.29
3673 3744 1.073125 TCTGGATTGGTCTTTTCGGCA 59.927 47.619 0.00 0.00 0.00 5.69
3784 3855 2.748605 CAAAGTTTGGCCGCATTGTTA 58.251 42.857 7.78 0.00 0.00 2.41
3852 3923 6.177610 ACGGGAAGATTGTAAAGCAAAGATA 58.822 36.000 0.00 0.00 40.91 1.98
3854 3925 7.339466 ACGGGAAGATTGTAAAGCAAAGATAAT 59.661 33.333 0.00 0.00 40.91 1.28
3979 4050 6.968263 TCCAAATGTGTTCTTTATTGACCA 57.032 33.333 0.00 0.00 0.00 4.02
4017 4112 2.945008 ACACACACACACAGATTCCAAG 59.055 45.455 0.00 0.00 0.00 3.61
4098 4193 8.534954 TCATTGGGTAGTATATATGCTACTCC 57.465 38.462 28.01 26.35 43.27 3.85
4117 4212 2.237893 TCCCTCCGTCCCAAAATAAGTC 59.762 50.000 0.00 0.00 0.00 3.01
4118 4213 2.277084 CCTCCGTCCCAAAATAAGTCG 58.723 52.381 0.00 0.00 0.00 4.18
4120 4215 1.276989 TCCGTCCCAAAATAAGTCGCT 59.723 47.619 0.00 0.00 0.00 4.93
4121 4216 2.496871 TCCGTCCCAAAATAAGTCGCTA 59.503 45.455 0.00 0.00 0.00 4.26
4122 4217 2.606272 CCGTCCCAAAATAAGTCGCTAC 59.394 50.000 0.00 0.00 0.00 3.58
4123 4218 3.518590 CGTCCCAAAATAAGTCGCTACT 58.481 45.455 0.00 0.00 37.65 2.57
4124 4219 3.550678 CGTCCCAAAATAAGTCGCTACTC 59.449 47.826 0.00 0.00 33.75 2.59
4125 4220 3.869832 GTCCCAAAATAAGTCGCTACTCC 59.130 47.826 0.00 0.00 33.75 3.85
4126 4221 3.118519 TCCCAAAATAAGTCGCTACTCCC 60.119 47.826 0.00 0.00 33.75 4.30
4128 4223 4.120589 CCAAAATAAGTCGCTACTCCCTC 58.879 47.826 0.00 0.00 33.75 4.30
4129 4224 4.120589 CAAAATAAGTCGCTACTCCCTCC 58.879 47.826 0.00 0.00 33.75 4.30
4130 4225 1.606903 ATAAGTCGCTACTCCCTCCG 58.393 55.000 0.00 0.00 33.75 4.63
4132 4227 1.031029 AAGTCGCTACTCCCTCCGTC 61.031 60.000 0.00 0.00 33.75 4.79
4133 4228 2.124403 TCGCTACTCCCTCCGTCC 60.124 66.667 0.00 0.00 0.00 4.79
4134 4229 2.124236 CGCTACTCCCTCCGTCCT 60.124 66.667 0.00 0.00 0.00 3.85
4135 4230 1.147824 CGCTACTCCCTCCGTCCTA 59.852 63.158 0.00 0.00 0.00 2.94
4136 4231 0.465097 CGCTACTCCCTCCGTCCTAA 60.465 60.000 0.00 0.00 0.00 2.69
4137 4232 1.772836 GCTACTCCCTCCGTCCTAAA 58.227 55.000 0.00 0.00 0.00 1.85
4138 4233 2.105766 GCTACTCCCTCCGTCCTAAAA 58.894 52.381 0.00 0.00 0.00 1.52
4139 4234 2.699321 GCTACTCCCTCCGTCCTAAAAT 59.301 50.000 0.00 0.00 0.00 1.82
4140 4235 3.893813 GCTACTCCCTCCGTCCTAAAATA 59.106 47.826 0.00 0.00 0.00 1.40
4141 4236 4.343239 GCTACTCCCTCCGTCCTAAAATAA 59.657 45.833 0.00 0.00 0.00 1.40
4142 4237 5.509332 GCTACTCCCTCCGTCCTAAAATAAG 60.509 48.000 0.00 0.00 0.00 1.73
4143 4238 4.359996 ACTCCCTCCGTCCTAAAATAAGT 58.640 43.478 0.00 0.00 0.00 2.24
4144 4239 4.161754 ACTCCCTCCGTCCTAAAATAAGTG 59.838 45.833 0.00 0.00 0.00 3.16
4145 4240 4.098894 TCCCTCCGTCCTAAAATAAGTGT 58.901 43.478 0.00 0.00 0.00 3.55
4146 4241 4.161001 TCCCTCCGTCCTAAAATAAGTGTC 59.839 45.833 0.00 0.00 0.00 3.67
4147 4242 4.081309 CCCTCCGTCCTAAAATAAGTGTCA 60.081 45.833 0.00 0.00 0.00 3.58
4148 4243 5.484715 CCTCCGTCCTAAAATAAGTGTCAA 58.515 41.667 0.00 0.00 0.00 3.18
4149 4244 5.350640 CCTCCGTCCTAAAATAAGTGTCAAC 59.649 44.000 0.00 0.00 0.00 3.18
4150 4245 4.925054 TCCGTCCTAAAATAAGTGTCAACG 59.075 41.667 0.00 0.00 0.00 4.10
4151 4246 4.092383 CCGTCCTAAAATAAGTGTCAACGG 59.908 45.833 0.00 0.00 39.77 4.44
4152 4247 4.687483 CGTCCTAAAATAAGTGTCAACGGT 59.313 41.667 0.00 0.00 0.00 4.83
4153 4248 5.178067 CGTCCTAAAATAAGTGTCAACGGTT 59.822 40.000 0.00 0.00 0.00 4.44
4154 4249 6.293027 CGTCCTAAAATAAGTGTCAACGGTTT 60.293 38.462 0.00 0.00 0.00 3.27
4155 4250 7.095691 CGTCCTAAAATAAGTGTCAACGGTTTA 60.096 37.037 0.00 0.00 0.00 2.01
4156 4251 8.225777 GTCCTAAAATAAGTGTCAACGGTTTAG 58.774 37.037 0.00 0.00 0.00 1.85
4157 4252 7.933033 TCCTAAAATAAGTGTCAACGGTTTAGT 59.067 33.333 0.00 0.00 0.00 2.24
4158 4253 8.562052 CCTAAAATAAGTGTCAACGGTTTAGTT 58.438 33.333 0.00 0.00 34.15 2.24
4166 4261 8.623310 AGTGTCAACGGTTTAGTTAAAATTTG 57.377 30.769 0.00 0.00 32.35 2.32
4202 4297 9.642327 TGTACTAAATCAGCGACACTTATTTTA 57.358 29.630 0.00 0.00 34.69 1.52
4211 4318 4.110482 CGACACTTATTTTAGGACGGAGG 58.890 47.826 0.00 0.00 0.00 4.30
4284 4391 7.894364 GGATACTTCCATAGTGAGGTATAGGAA 59.106 40.741 0.00 0.00 42.12 3.36
4285 4392 9.310449 GATACTTCCATAGTGAGGTATAGGAAA 57.690 37.037 0.00 0.00 37.57 3.13
4288 4395 9.670442 ACTTCCATAGTGAGGTATAGGAAATAA 57.330 33.333 0.00 0.00 35.19 1.40
4339 4447 9.620259 AGTGGGTTTCTAAAAGATCTTCATATC 57.380 33.333 8.78 0.00 0.00 1.63
4393 4501 4.917385 TGTGTAACATCCTGGCTTAATGT 58.083 39.130 0.00 0.00 45.67 2.71
4394 4502 5.321102 TGTGTAACATCCTGGCTTAATGTT 58.679 37.500 13.83 13.83 45.67 2.71
4395 4503 5.772672 TGTGTAACATCCTGGCTTAATGTTT 59.227 36.000 14.38 2.97 45.67 2.83
4396 4504 6.092748 GTGTAACATCCTGGCTTAATGTTTG 58.907 40.000 14.38 0.00 42.14 2.93
4397 4505 6.007076 TGTAACATCCTGGCTTAATGTTTGA 58.993 36.000 14.38 2.64 42.14 2.69
4398 4506 6.491745 TGTAACATCCTGGCTTAATGTTTGAA 59.508 34.615 14.38 0.00 42.14 2.69
4399 4507 5.649782 ACATCCTGGCTTAATGTTTGAAG 57.350 39.130 0.00 0.00 29.51 3.02
4400 4508 5.324409 ACATCCTGGCTTAATGTTTGAAGA 58.676 37.500 0.00 0.00 29.51 2.87
4401 4509 5.774690 ACATCCTGGCTTAATGTTTGAAGAA 59.225 36.000 0.00 0.00 29.51 2.52
4402 4510 5.964958 TCCTGGCTTAATGTTTGAAGAAG 57.035 39.130 0.00 0.00 0.00 2.85
4403 4511 5.385198 TCCTGGCTTAATGTTTGAAGAAGT 58.615 37.500 0.00 0.00 0.00 3.01
4404 4512 5.833131 TCCTGGCTTAATGTTTGAAGAAGTT 59.167 36.000 0.00 0.00 0.00 2.66
4405 4513 6.016276 TCCTGGCTTAATGTTTGAAGAAGTTC 60.016 38.462 0.00 0.00 0.00 3.01
4406 4514 5.757886 TGGCTTAATGTTTGAAGAAGTTCG 58.242 37.500 0.00 0.00 35.17 3.95
4407 4515 4.617223 GGCTTAATGTTTGAAGAAGTTCGC 59.383 41.667 0.00 0.00 35.17 4.70
4408 4516 5.452777 GCTTAATGTTTGAAGAAGTTCGCT 58.547 37.500 0.00 0.00 35.17 4.93
4409 4517 6.348213 GGCTTAATGTTTGAAGAAGTTCGCTA 60.348 38.462 0.00 0.00 35.17 4.26
4410 4518 7.075741 GCTTAATGTTTGAAGAAGTTCGCTAA 58.924 34.615 0.00 0.00 35.17 3.09
4411 4519 7.589954 GCTTAATGTTTGAAGAAGTTCGCTAAA 59.410 33.333 0.00 0.00 35.17 1.85
4412 4520 9.445786 CTTAATGTTTGAAGAAGTTCGCTAAAA 57.554 29.630 0.00 0.00 35.17 1.52
4413 4521 9.790389 TTAATGTTTGAAGAAGTTCGCTAAAAA 57.210 25.926 0.00 0.00 35.17 1.94
4414 4522 8.871686 AATGTTTGAAGAAGTTCGCTAAAAAT 57.128 26.923 0.00 0.00 35.17 1.82
4415 4523 7.678194 TGTTTGAAGAAGTTCGCTAAAAATG 57.322 32.000 0.00 0.00 35.17 2.32
4416 4524 7.254852 TGTTTGAAGAAGTTCGCTAAAAATGT 58.745 30.769 0.00 0.00 35.17 2.71
4417 4525 7.219917 TGTTTGAAGAAGTTCGCTAAAAATGTG 59.780 33.333 0.00 0.00 35.17 3.21
4418 4526 5.757886 TGAAGAAGTTCGCTAAAAATGTGG 58.242 37.500 0.00 0.00 35.17 4.17
4419 4527 5.298276 TGAAGAAGTTCGCTAAAAATGTGGT 59.702 36.000 0.00 0.00 35.17 4.16
4420 4528 6.483974 TGAAGAAGTTCGCTAAAAATGTGGTA 59.516 34.615 0.00 0.00 35.17 3.25
4421 4529 6.237313 AGAAGTTCGCTAAAAATGTGGTAC 57.763 37.500 0.00 0.00 0.00 3.34
4422 4530 5.761234 AGAAGTTCGCTAAAAATGTGGTACA 59.239 36.000 0.00 0.00 0.00 2.90
4481 4589 5.994250 ACTACTCATATCAACAAGGTGCAT 58.006 37.500 0.00 0.00 0.00 3.96
4485 4593 5.587844 ACTCATATCAACAAGGTGCATCTTC 59.412 40.000 9.91 0.00 0.00 2.87
4487 4595 6.182627 TCATATCAACAAGGTGCATCTTCTT 58.817 36.000 9.91 0.93 0.00 2.52
4524 4634 7.309194 CGATCTTCAAAGAACCCCAAAGTTAAT 60.309 37.037 0.00 0.00 38.77 1.40
4529 4639 5.405935 AAGAACCCCAAAGTTAATCATGC 57.594 39.130 0.00 0.00 0.00 4.06
4531 4641 4.706962 AGAACCCCAAAGTTAATCATGCTC 59.293 41.667 0.00 0.00 0.00 4.26
4559 4669 7.618502 TTAAATTGCGTGATAATGGTGTAGT 57.381 32.000 0.00 0.00 0.00 2.73
4642 4753 6.273071 GTGATAAGGCCACCATATTTGAAAC 58.727 40.000 5.01 0.00 0.00 2.78
4646 4757 1.822371 GCCACCATATTTGAAACCGGT 59.178 47.619 0.00 0.00 0.00 5.28
4650 4761 2.752903 ACCATATTTGAAACCGGTGAGC 59.247 45.455 8.52 0.33 0.00 4.26
4655 4766 2.045561 TTGAAACCGGTGAGCAGAAA 57.954 45.000 8.52 0.00 0.00 2.52
4666 4777 2.286833 GTGAGCAGAAAAACTACGTGCA 59.713 45.455 0.00 0.00 36.57 4.57
4694 4805 3.344064 CCAACTGTGGTTTGTGCAC 57.656 52.632 10.75 10.75 40.42 4.57
4695 4806 0.529833 CCAACTGTGGTTTGTGCACA 59.470 50.000 17.42 17.42 40.42 4.57
4696 4807 1.067283 CCAACTGTGGTTTGTGCACAA 60.067 47.619 27.96 27.96 40.42 3.33
4697 4808 1.991965 CAACTGTGGTTTGTGCACAAC 59.008 47.619 31.17 23.54 35.28 3.32
4698 4809 1.252175 ACTGTGGTTTGTGCACAACA 58.748 45.000 31.17 24.04 35.28 3.33
4699 4810 1.824230 ACTGTGGTTTGTGCACAACAT 59.176 42.857 31.17 13.44 38.99 2.71
4700 4811 2.195096 CTGTGGTTTGTGCACAACATG 58.805 47.619 31.17 18.08 38.99 3.21
4701 4812 1.821136 TGTGGTTTGTGCACAACATGA 59.179 42.857 31.17 14.64 38.99 3.07
4702 4813 2.429971 TGTGGTTTGTGCACAACATGAT 59.570 40.909 31.17 0.00 38.99 2.45
4703 4814 3.118847 TGTGGTTTGTGCACAACATGATT 60.119 39.130 31.17 0.00 38.99 2.57
4704 4815 3.870419 GTGGTTTGTGCACAACATGATTT 59.130 39.130 31.17 0.00 38.99 2.17
4705 4816 4.332268 GTGGTTTGTGCACAACATGATTTT 59.668 37.500 31.17 0.00 38.99 1.82
4706 4817 4.940046 TGGTTTGTGCACAACATGATTTTT 59.060 33.333 31.17 0.00 38.99 1.94
4707 4818 6.036517 GTGGTTTGTGCACAACATGATTTTTA 59.963 34.615 31.17 10.40 38.99 1.52
4708 4819 6.257411 TGGTTTGTGCACAACATGATTTTTAG 59.743 34.615 31.17 0.00 38.99 1.85
4709 4820 5.903764 TTGTGCACAACATGATTTTTAGC 57.096 34.783 27.96 0.00 38.99 3.09
4710 4821 4.305769 TGTGCACAACATGATTTTTAGCC 58.694 39.130 19.28 0.00 32.36 3.93
4711 4822 3.679502 GTGCACAACATGATTTTTAGCCC 59.320 43.478 13.17 0.00 0.00 5.19
4712 4823 2.923020 GCACAACATGATTTTTAGCCCG 59.077 45.455 0.00 0.00 0.00 6.13
4713 4824 3.613910 GCACAACATGATTTTTAGCCCGT 60.614 43.478 0.00 0.00 0.00 5.28
4714 4825 4.555262 CACAACATGATTTTTAGCCCGTT 58.445 39.130 0.00 0.00 0.00 4.44
4715 4826 4.987912 CACAACATGATTTTTAGCCCGTTT 59.012 37.500 0.00 0.00 0.00 3.60
4716 4827 5.465056 CACAACATGATTTTTAGCCCGTTTT 59.535 36.000 0.00 0.00 0.00 2.43
4717 4828 6.642950 CACAACATGATTTTTAGCCCGTTTTA 59.357 34.615 0.00 0.00 0.00 1.52
4718 4829 6.866248 ACAACATGATTTTTAGCCCGTTTTAG 59.134 34.615 0.00 0.00 0.00 1.85
4719 4830 5.407502 ACATGATTTTTAGCCCGTTTTAGC 58.592 37.500 0.00 0.00 0.00 3.09
4720 4831 5.185056 ACATGATTTTTAGCCCGTTTTAGCT 59.815 36.000 0.00 0.00 43.20 3.32
4721 4832 5.305139 TGATTTTTAGCCCGTTTTAGCTC 57.695 39.130 0.00 0.00 40.56 4.09
4722 4833 4.762765 TGATTTTTAGCCCGTTTTAGCTCA 59.237 37.500 0.00 0.00 40.56 4.26
4723 4834 5.241949 TGATTTTTAGCCCGTTTTAGCTCAA 59.758 36.000 0.00 0.00 40.56 3.02
4724 4835 4.492791 TTTTAGCCCGTTTTAGCTCAAC 57.507 40.909 0.00 0.00 40.56 3.18
4725 4836 3.412237 TTAGCCCGTTTTAGCTCAACT 57.588 42.857 0.00 0.00 40.56 3.16
4726 4837 4.540359 TTAGCCCGTTTTAGCTCAACTA 57.460 40.909 0.00 0.00 40.56 2.24
4727 4838 2.973945 AGCCCGTTTTAGCTCAACTAG 58.026 47.619 0.00 0.00 32.71 2.57
4728 4839 2.007608 GCCCGTTTTAGCTCAACTAGG 58.992 52.381 0.00 0.00 30.79 3.02
4729 4840 2.007608 CCCGTTTTAGCTCAACTAGGC 58.992 52.381 0.00 0.00 30.79 3.93
4730 4841 2.007608 CCGTTTTAGCTCAACTAGGCC 58.992 52.381 0.00 0.00 30.79 5.19
4731 4842 2.007608 CGTTTTAGCTCAACTAGGCCC 58.992 52.381 0.00 0.00 30.79 5.80
4732 4843 2.614481 CGTTTTAGCTCAACTAGGCCCA 60.614 50.000 0.00 0.00 30.79 5.36
4733 4844 3.010420 GTTTTAGCTCAACTAGGCCCAG 58.990 50.000 0.00 0.00 30.79 4.45
4734 4845 1.952621 TTAGCTCAACTAGGCCCAGT 58.047 50.000 0.00 0.00 30.79 4.00
4735 4846 1.952621 TAGCTCAACTAGGCCCAGTT 58.047 50.000 11.13 11.13 39.34 3.16
4736 4847 1.952621 AGCTCAACTAGGCCCAGTTA 58.047 50.000 16.60 4.90 36.61 2.24
4737 4848 2.266279 AGCTCAACTAGGCCCAGTTAA 58.734 47.619 16.60 0.78 36.61 2.01
4738 4849 2.237392 AGCTCAACTAGGCCCAGTTAAG 59.763 50.000 16.60 13.03 36.61 1.85
4739 4850 2.027100 GCTCAACTAGGCCCAGTTAAGT 60.027 50.000 16.60 0.00 36.61 2.24
4740 4851 3.863041 CTCAACTAGGCCCAGTTAAGTC 58.137 50.000 16.60 0.00 36.61 3.01
4741 4852 3.244582 TCAACTAGGCCCAGTTAAGTCA 58.755 45.455 16.60 0.00 36.61 3.41
4742 4853 3.007614 TCAACTAGGCCCAGTTAAGTCAC 59.992 47.826 16.60 0.00 36.61 3.67
4743 4854 2.616524 ACTAGGCCCAGTTAAGTCACA 58.383 47.619 0.00 0.00 0.00 3.58
4744 4855 2.302157 ACTAGGCCCAGTTAAGTCACAC 59.698 50.000 0.00 0.00 0.00 3.82
4745 4856 1.136828 AGGCCCAGTTAAGTCACACA 58.863 50.000 0.00 0.00 0.00 3.72
4746 4857 1.705186 AGGCCCAGTTAAGTCACACAT 59.295 47.619 0.00 0.00 0.00 3.21
4747 4858 1.812571 GGCCCAGTTAAGTCACACATG 59.187 52.381 0.00 0.00 0.00 3.21
4748 4859 1.200020 GCCCAGTTAAGTCACACATGC 59.800 52.381 0.00 0.00 0.00 4.06
4749 4860 2.503331 CCCAGTTAAGTCACACATGCA 58.497 47.619 0.00 0.00 0.00 3.96
4750 4861 2.884012 CCCAGTTAAGTCACACATGCAA 59.116 45.455 0.00 0.00 0.00 4.08
4751 4862 3.058016 CCCAGTTAAGTCACACATGCAAG 60.058 47.826 0.00 0.00 0.00 4.01
4752 4863 3.058016 CCAGTTAAGTCACACATGCAAGG 60.058 47.826 0.00 0.00 0.00 3.61
4753 4864 3.058016 CAGTTAAGTCACACATGCAAGGG 60.058 47.826 0.00 0.00 0.00 3.95
4754 4865 2.198827 TAAGTCACACATGCAAGGGG 57.801 50.000 0.00 0.00 0.00 4.79
4755 4866 1.181098 AAGTCACACATGCAAGGGGC 61.181 55.000 0.00 0.00 45.13 5.80
4756 4867 2.283101 TCACACATGCAAGGGGCC 60.283 61.111 0.00 0.00 43.89 5.80
4757 4868 2.601067 CACACATGCAAGGGGCCA 60.601 61.111 4.39 0.00 43.89 5.36
4758 4869 2.200930 ACACATGCAAGGGGCCAA 59.799 55.556 4.39 0.00 43.89 4.52
4759 4870 1.459158 ACACATGCAAGGGGCCAAA 60.459 52.632 4.39 0.00 43.89 3.28
4760 4871 1.053264 ACACATGCAAGGGGCCAAAA 61.053 50.000 4.39 0.00 43.89 2.44
4761 4872 0.108207 CACATGCAAGGGGCCAAAAA 59.892 50.000 4.39 0.00 43.89 1.94
4762 4873 0.108396 ACATGCAAGGGGCCAAAAAC 59.892 50.000 4.39 0.00 43.89 2.43
4763 4874 0.606130 CATGCAAGGGGCCAAAAACC 60.606 55.000 4.39 0.00 43.89 3.27
4764 4875 1.059006 ATGCAAGGGGCCAAAAACCA 61.059 50.000 4.39 0.00 43.89 3.67
4765 4876 1.071299 GCAAGGGGCCAAAAACCAG 59.929 57.895 4.39 0.00 36.11 4.00
4766 4877 1.695114 GCAAGGGGCCAAAAACCAGT 61.695 55.000 4.39 0.00 36.11 4.00
4767 4878 0.106521 CAAGGGGCCAAAAACCAGTG 59.893 55.000 4.39 0.00 0.00 3.66
4768 4879 1.695114 AAGGGGCCAAAAACCAGTGC 61.695 55.000 4.39 0.00 0.00 4.40
4769 4880 2.028925 GGGCCAAAAACCAGTGCG 59.971 61.111 4.39 0.00 0.00 5.34
4770 4881 2.028925 GGCCAAAAACCAGTGCGG 59.971 61.111 0.00 0.00 42.50 5.69
4771 4882 2.028925 GCCAAAAACCAGTGCGGG 59.971 61.111 0.00 0.00 40.22 6.13
4772 4883 2.791868 GCCAAAAACCAGTGCGGGT 61.792 57.895 0.00 0.00 45.04 5.28
4773 4884 1.457009 GCCAAAAACCAGTGCGGGTA 61.457 55.000 0.00 0.00 41.32 3.69
4774 4885 1.033574 CCAAAAACCAGTGCGGGTAA 58.966 50.000 0.00 0.00 41.32 2.85
4775 4886 1.269361 CCAAAAACCAGTGCGGGTAAC 60.269 52.381 0.00 0.00 41.32 2.50
4776 4887 1.679153 CAAAAACCAGTGCGGGTAACT 59.321 47.619 0.00 0.00 41.32 2.24
4777 4888 2.879646 CAAAAACCAGTGCGGGTAACTA 59.120 45.455 0.00 0.00 41.32 2.24
4778 4889 2.934886 AAACCAGTGCGGGTAACTAA 57.065 45.000 0.00 0.00 41.32 2.24
4779 4890 2.934886 AACCAGTGCGGGTAACTAAA 57.065 45.000 0.00 0.00 41.32 1.85
4780 4891 2.174363 ACCAGTGCGGGTAACTAAAC 57.826 50.000 0.00 0.00 40.07 2.01
4781 4892 1.695788 ACCAGTGCGGGTAACTAAACT 59.304 47.619 0.00 0.00 40.07 2.66
4782 4893 2.073816 CCAGTGCGGGTAACTAAACTG 58.926 52.381 0.00 0.00 38.70 3.16
4783 4894 2.073816 CAGTGCGGGTAACTAAACTGG 58.926 52.381 0.00 0.00 36.78 4.00
4784 4895 0.800631 GTGCGGGTAACTAAACTGGC 59.199 55.000 0.00 0.00 0.00 4.85
4785 4896 0.671163 TGCGGGTAACTAAACTGGCG 60.671 55.000 0.00 0.00 0.00 5.69
4786 4897 1.363885 GCGGGTAACTAAACTGGCGG 61.364 60.000 0.00 0.00 0.00 6.13
4787 4898 0.741927 CGGGTAACTAAACTGGCGGG 60.742 60.000 0.00 0.00 0.00 6.13
4788 4899 0.325933 GGGTAACTAAACTGGCGGGT 59.674 55.000 0.00 0.00 0.00 5.28
4789 4900 1.271543 GGGTAACTAAACTGGCGGGTT 60.272 52.381 0.57 0.57 0.00 4.11
4790 4901 2.507484 GGTAACTAAACTGGCGGGTTT 58.493 47.619 0.00 7.75 41.51 3.27
4791 4902 2.886523 GGTAACTAAACTGGCGGGTTTT 59.113 45.455 0.00 0.00 39.66 2.43
4792 4903 3.318839 GGTAACTAAACTGGCGGGTTTTT 59.681 43.478 0.00 0.00 39.66 1.94
4814 4925 5.798015 TTTTTAACACAGTACAGACGCAA 57.202 34.783 0.00 0.00 0.00 4.85
4816 4927 1.217882 AACACAGTACAGACGCAAGC 58.782 50.000 0.00 0.00 45.62 4.01
4817 4928 0.939577 ACACAGTACAGACGCAAGCG 60.940 55.000 13.50 13.50 46.03 4.68
4818 4929 2.022129 ACAGTACAGACGCAAGCGC 61.022 57.895 15.09 0.00 44.19 5.92
4819 4930 1.734477 CAGTACAGACGCAAGCGCT 60.734 57.895 15.09 2.64 44.19 5.92
4820 4931 1.444553 AGTACAGACGCAAGCGCTC 60.445 57.895 12.06 11.06 44.19 5.03
4821 4932 1.733041 GTACAGACGCAAGCGCTCA 60.733 57.895 12.06 0.83 44.19 4.26
4822 4933 1.078759 GTACAGACGCAAGCGCTCAT 61.079 55.000 12.06 0.00 44.19 2.90
4823 4934 0.454196 TACAGACGCAAGCGCTCATA 59.546 50.000 12.06 5.16 44.19 2.15
4824 4935 1.078759 ACAGACGCAAGCGCTCATAC 61.079 55.000 12.06 1.58 44.19 2.39
4825 4936 1.078201 CAGACGCAAGCGCTCATACA 61.078 55.000 12.06 0.00 44.19 2.29
4826 4937 0.179100 AGACGCAAGCGCTCATACAT 60.179 50.000 12.06 0.00 44.19 2.29
4827 4938 0.042708 GACGCAAGCGCTCATACATG 60.043 55.000 12.06 5.02 44.19 3.21
4828 4939 1.368493 CGCAAGCGCTCATACATGC 60.368 57.895 12.06 15.44 35.30 4.06
4833 4944 4.017092 CGCTCATACATGCGCTCA 57.983 55.556 9.73 0.00 45.50 4.26
4834 4945 2.525422 CGCTCATACATGCGCTCAT 58.475 52.632 9.73 0.00 45.50 2.90
4835 4946 0.437678 CGCTCATACATGCGCTCATC 59.562 55.000 9.73 0.00 45.50 2.92
4836 4947 0.795085 GCTCATACATGCGCTCATCC 59.205 55.000 9.73 0.00 35.74 3.51
4837 4948 1.436600 CTCATACATGCGCTCATCCC 58.563 55.000 9.73 0.00 0.00 3.85
4838 4949 1.001746 CTCATACATGCGCTCATCCCT 59.998 52.381 9.73 0.00 0.00 4.20
4839 4950 2.232208 CTCATACATGCGCTCATCCCTA 59.768 50.000 9.73 0.00 0.00 3.53
4840 4951 2.833943 TCATACATGCGCTCATCCCTAT 59.166 45.455 9.73 0.00 0.00 2.57
4841 4952 2.749280 TACATGCGCTCATCCCTATG 57.251 50.000 9.73 3.49 0.00 2.23
4842 4953 1.051008 ACATGCGCTCATCCCTATGA 58.949 50.000 9.73 0.00 39.87 2.15
4843 4954 1.417517 ACATGCGCTCATCCCTATGAA 59.582 47.619 9.73 0.00 41.57 2.57
4844 4955 1.802960 CATGCGCTCATCCCTATGAAC 59.197 52.381 9.73 0.00 41.57 3.18
4846 4957 2.522060 CGCTCATCCCTATGAACGC 58.478 57.895 0.00 0.00 42.71 4.84
4847 4958 0.249447 CGCTCATCCCTATGAACGCA 60.249 55.000 0.00 0.00 42.71 5.24
4848 4959 1.606480 CGCTCATCCCTATGAACGCAT 60.606 52.381 0.00 0.00 42.71 4.73
4849 4960 2.352715 CGCTCATCCCTATGAACGCATA 60.353 50.000 0.00 0.00 42.71 3.14
4850 4961 2.996621 GCTCATCCCTATGAACGCATAC 59.003 50.000 0.00 0.00 41.57 2.39
4851 4962 3.554960 GCTCATCCCTATGAACGCATACA 60.555 47.826 0.00 0.00 41.57 2.29
4852 4963 3.990092 TCATCCCTATGAACGCATACAC 58.010 45.455 0.00 0.00 39.20 2.90
4853 4964 2.502213 TCCCTATGAACGCATACACG 57.498 50.000 0.00 0.00 35.94 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.549221 GCTTTGTGCAAAGGTTAGCGTTA 60.549 43.478 21.58 0.00 45.85 3.18
28 29 8.661352 ATTGTATTCTTTCTTGGTTGGTTTTG 57.339 30.769 0.00 0.00 0.00 2.44
31 32 7.595819 TGATTGTATTCTTTCTTGGTTGGTT 57.404 32.000 0.00 0.00 0.00 3.67
45 49 8.649973 AGGATTCGTTAGTCTTGATTGTATTC 57.350 34.615 0.00 0.00 0.00 1.75
47 51 8.012957 AGAGGATTCGTTAGTCTTGATTGTAT 57.987 34.615 0.00 0.00 0.00 2.29
63 67 3.190874 GGTGTCAAGCTTAGAGGATTCG 58.809 50.000 0.00 0.00 0.00 3.34
139 143 1.405526 CGGGTGAGAATGTGATCCGTT 60.406 52.381 0.00 0.00 0.00 4.44
167 173 5.220912 GCTGCATATCAACAATAGAGTTGCA 60.221 40.000 0.00 0.00 46.44 4.08
175 181 5.651576 TCCACAAAGCTGCATATCAACAATA 59.348 36.000 1.02 0.00 0.00 1.90
180 186 2.754552 GGTCCACAAAGCTGCATATCAA 59.245 45.455 1.02 0.00 0.00 2.57
196 202 1.761174 GAGCCACTTTGGAGGTCCA 59.239 57.895 0.00 0.00 45.94 4.02
232 241 4.991056 CCGGGTCTGATATATTCAACAGTG 59.009 45.833 0.00 0.00 32.78 3.66
243 252 1.485066 GGTGTTGTCCGGGTCTGATAT 59.515 52.381 0.00 0.00 0.00 1.63
244 253 0.899720 GGTGTTGTCCGGGTCTGATA 59.100 55.000 0.00 0.00 0.00 2.15
253 262 1.032657 TGTGTTTGGGGTGTTGTCCG 61.033 55.000 0.00 0.00 0.00 4.79
256 265 0.251832 TGGTGTGTTTGGGGTGTTGT 60.252 50.000 0.00 0.00 0.00 3.32
267 283 4.889409 ACATCTGAAGTTTGATGGTGTGTT 59.111 37.500 18.01 1.17 42.96 3.32
278 294 1.620822 GGGTGCCACATCTGAAGTTT 58.379 50.000 0.00 0.00 0.00 2.66
289 305 2.346284 TAGTTGTGTGGGGGTGCCAC 62.346 60.000 0.00 0.00 38.52 5.01
333 349 2.203800 TCATAGTTCGTCGATGGCAC 57.796 50.000 4.48 2.37 31.59 5.01
348 364 2.376855 TGGGTCATGTGTTGGGTTCATA 59.623 45.455 0.00 0.00 0.00 2.15
373 389 0.877649 CATCGACGGCATCTGGAAGG 60.878 60.000 0.00 0.00 0.00 3.46
412 428 1.478654 GCTTGGGAGGTGTCCAAAAGA 60.479 52.381 9.25 0.00 46.07 2.52
416 432 0.110486 GAAGCTTGGGAGGTGTCCAA 59.890 55.000 2.10 0.00 46.07 3.53
461 479 3.589654 CTTCGAGCCCTGCCGTTCA 62.590 63.158 0.00 0.00 0.00 3.18
471 490 1.079750 GGACCTGTGTCTTCGAGCC 60.080 63.158 0.00 0.00 41.47 4.70
478 497 0.469917 CTTGTGGTGGACCTGTGTCT 59.530 55.000 0.00 0.00 41.47 3.41
530 552 5.398236 TGGGGATGAATTTGAAAACCAGTA 58.602 37.500 0.00 0.00 0.00 2.74
637 660 6.237755 CGTAGCCTAGATTTTTAGGTTGTTCG 60.238 42.308 0.00 0.42 41.90 3.95
672 696 2.021793 CACGCATGCGGATCGTTG 59.978 61.111 39.95 25.49 44.69 4.10
681 705 1.394917 GATTATCGGATCCACGCATGC 59.605 52.381 13.41 7.91 0.00 4.06
700 726 0.984230 GTCATTGGTGGTGAGGAGGA 59.016 55.000 0.00 0.00 0.00 3.71
751 777 4.831307 CTTCCGTCGCCGTCCTCG 62.831 72.222 0.00 0.00 0.00 4.63
841 867 6.353323 TCGGCAAGGACAAAGATGATTTATA 58.647 36.000 0.00 0.00 0.00 0.98
935 961 1.594293 GGGTGTGTGTGTCTGTCGG 60.594 63.158 0.00 0.00 0.00 4.79
1076 1105 3.965258 TCAGGCGGTGGGCATTGT 61.965 61.111 0.00 0.00 46.16 2.71
1490 1532 2.173519 AGAACAAGGGGTCGTAATCGA 58.826 47.619 0.00 0.00 44.12 3.59
1506 1548 6.986231 ACAATTTCCAACAAATGAGGAAGAAC 59.014 34.615 10.35 0.00 41.97 3.01
1569 1611 9.233232 GAACCCAATTATCACATTTATTTCGAC 57.767 33.333 0.00 0.00 0.00 4.20
1576 1618 6.317642 CCGAGTGAACCCAATTATCACATTTA 59.682 38.462 7.75 0.00 44.55 1.40
1591 1633 6.308371 TGAGAATTTTAAACCGAGTGAACC 57.692 37.500 0.00 0.00 0.00 3.62
1593 1635 7.148639 CGAGATGAGAATTTTAAACCGAGTGAA 60.149 37.037 0.00 0.00 0.00 3.18
1602 1645 6.183360 GCGACTTCCGAGATGAGAATTTTAAA 60.183 38.462 0.00 0.00 41.76 1.52
1619 1662 4.557205 AGTATATTCATTCGGCGACTTCC 58.443 43.478 10.16 0.00 0.00 3.46
1763 1816 2.755836 AACGTTGTCACAATCACTGC 57.244 45.000 0.00 0.00 0.00 4.40
1998 2055 3.390639 ACCCATGATGCTTTCCAAACAAA 59.609 39.130 0.00 0.00 0.00 2.83
2013 2070 6.295745 CCGACTACTCTAGTATCTACCCATGA 60.296 46.154 0.00 0.00 39.59 3.07
2022 2079 4.575645 ACAAGTGCCGACTACTCTAGTATC 59.424 45.833 0.00 0.00 39.59 2.24
2113 2170 4.789629 GTGAAGTGTGTTTCCAAAACGTAC 59.210 41.667 0.00 0.95 0.00 3.67
2121 2178 2.241176 AGGAAGGTGAAGTGTGTTTCCA 59.759 45.455 4.14 0.00 37.21 3.53
2133 2190 1.770110 ACACTGGGCAGGAAGGTGA 60.770 57.895 0.00 0.00 0.00 4.02
2209 2266 7.013846 CAGAATAAGAGTAAGTAGTCTCTGGGG 59.986 44.444 0.00 0.00 40.36 4.96
2218 2275 6.461788 GGAGCCACCAGAATAAGAGTAAGTAG 60.462 46.154 0.00 0.00 38.79 2.57
2228 2285 4.037222 TGTATCAGGAGCCACCAGAATAA 58.963 43.478 0.47 0.00 42.04 1.40
2335 2392 0.533531 CTCACAAGCACCACAGAGCA 60.534 55.000 0.00 0.00 31.08 4.26
2336 2393 0.250038 TCTCACAAGCACCACAGAGC 60.250 55.000 0.00 0.00 0.00 4.09
2337 2394 2.141517 CTTCTCACAAGCACCACAGAG 58.858 52.381 0.00 0.00 0.00 3.35
2338 2395 1.486310 ACTTCTCACAAGCACCACAGA 59.514 47.619 0.00 0.00 0.00 3.41
2339 2396 1.959042 ACTTCTCACAAGCACCACAG 58.041 50.000 0.00 0.00 0.00 3.66
2340 2397 2.016318 CAACTTCTCACAAGCACCACA 58.984 47.619 0.00 0.00 0.00 4.17
2341 2398 1.268743 GCAACTTCTCACAAGCACCAC 60.269 52.381 0.00 0.00 0.00 4.16
2473 2530 8.229605 TCATTTCATTTGGATCATCCTCCTAAT 58.770 33.333 4.96 0.00 40.09 1.73
2563 2630 5.741011 TGGCAGTAAAAGTTATAGGACCAG 58.259 41.667 0.00 0.00 0.00 4.00
2584 2651 4.037208 CCAGCAGCAGGTTTTATATCTTGG 59.963 45.833 0.00 0.00 0.00 3.61
2611 2678 4.095410 TGTTGTTCAGTTTGTCAGCAAG 57.905 40.909 0.00 0.00 35.82 4.01
2628 2695 8.918658 CCACTGAACAAAGAAATATGATTGTTG 58.081 33.333 7.39 0.00 43.77 3.33
2643 2710 6.459573 GCACAGAAAGATAACCACTGAACAAA 60.460 38.462 0.00 0.00 33.53 2.83
2784 2855 7.759886 CAGTAAGCTGTAGTAATGCTGAAAGTA 59.240 37.037 0.00 0.00 37.92 2.24
2824 2895 0.809636 CCGTAACTGGCATGATCGCA 60.810 55.000 0.00 0.00 0.00 5.10
2923 2994 0.531974 TGCTGAACTCCGTGACAACC 60.532 55.000 0.00 0.00 0.00 3.77
3177 3248 1.876497 TTGCTTGCGAAGATTGGCCC 61.876 55.000 0.00 0.00 0.00 5.80
3190 3261 5.159209 GTCATCAGGTTTGAGAATTGCTTG 58.841 41.667 0.00 0.00 36.61 4.01
3352 3423 0.692476 TGACCTGTCCCATGACCTTG 59.308 55.000 0.00 0.00 41.01 3.61
3382 3453 2.086869 CGGTTGTAGAGGACGGTTAGA 58.913 52.381 0.00 0.00 0.00 2.10
3418 3489 2.282958 ACGAGTCGCCTCAAGGGA 60.283 61.111 13.59 0.00 37.59 4.20
3478 3549 1.701847 ACTTGCTTCACCAGGATCAGT 59.298 47.619 0.00 0.00 0.00 3.41
3673 3744 3.895041 CCCCAAACACACCACTTAGAATT 59.105 43.478 0.00 0.00 0.00 2.17
3784 3855 2.594592 GACAGCCACGCCAAAGGT 60.595 61.111 0.00 0.00 0.00 3.50
3852 3923 8.427276 TCTACTTCTGATGTCAATATGCTCATT 58.573 33.333 0.00 0.00 0.00 2.57
3854 3925 7.352079 TCTACTTCTGATGTCAATATGCTCA 57.648 36.000 0.00 0.00 0.00 4.26
3893 3964 9.082313 AGAAGAAATTCCTGTACATTGTCATTT 57.918 29.630 0.00 0.00 0.00 2.32
4017 4112 7.869429 CCTTGCATTTGGATGTATTTTCCTATC 59.131 37.037 0.00 0.00 35.63 2.08
4098 4193 2.277084 CGACTTATTTTGGGACGGAGG 58.723 52.381 0.00 0.00 0.00 4.30
4117 4212 0.465097 TTAGGACGGAGGGAGTAGCG 60.465 60.000 0.00 0.00 0.00 4.26
4118 4213 1.772836 TTTAGGACGGAGGGAGTAGC 58.227 55.000 0.00 0.00 0.00 3.58
4120 4215 5.361857 CACTTATTTTAGGACGGAGGGAGTA 59.638 44.000 0.00 0.00 0.00 2.59
4121 4216 4.161754 CACTTATTTTAGGACGGAGGGAGT 59.838 45.833 0.00 0.00 0.00 3.85
4122 4217 4.161754 ACACTTATTTTAGGACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
4123 4218 4.098894 ACACTTATTTTAGGACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
4124 4219 4.081309 TGACACTTATTTTAGGACGGAGGG 60.081 45.833 0.00 0.00 0.00 4.30
4125 4220 5.080969 TGACACTTATTTTAGGACGGAGG 57.919 43.478 0.00 0.00 0.00 4.30
4126 4221 5.061808 CGTTGACACTTATTTTAGGACGGAG 59.938 44.000 0.00 0.00 0.00 4.63
4128 4223 4.092383 CCGTTGACACTTATTTTAGGACGG 59.908 45.833 0.00 0.00 40.02 4.79
4129 4224 4.687483 ACCGTTGACACTTATTTTAGGACG 59.313 41.667 0.00 0.00 0.00 4.79
4130 4225 6.549912 AACCGTTGACACTTATTTTAGGAC 57.450 37.500 0.00 0.00 0.00 3.85
4132 4227 8.091385 ACTAAACCGTTGACACTTATTTTAGG 57.909 34.615 0.00 0.00 32.14 2.69
4140 4235 9.078753 CAAATTTTAACTAAACCGTTGACACTT 57.921 29.630 0.00 0.00 0.00 3.16
4141 4236 7.703197 CCAAATTTTAACTAAACCGTTGACACT 59.297 33.333 0.00 0.00 0.00 3.55
4142 4237 7.488792 ACCAAATTTTAACTAAACCGTTGACAC 59.511 33.333 0.00 0.00 0.00 3.67
4143 4238 7.545489 ACCAAATTTTAACTAAACCGTTGACA 58.455 30.769 0.00 0.00 0.00 3.58
4144 4239 7.990541 ACCAAATTTTAACTAAACCGTTGAC 57.009 32.000 0.00 0.00 0.00 3.18
4145 4240 8.680903 TGTACCAAATTTTAACTAAACCGTTGA 58.319 29.630 0.00 0.00 0.00 3.18
4146 4241 8.853469 TGTACCAAATTTTAACTAAACCGTTG 57.147 30.769 0.00 0.00 0.00 4.10
4147 4242 9.866798 TTTGTACCAAATTTTAACTAAACCGTT 57.133 25.926 0.00 0.00 0.00 4.44
4148 4243 9.518906 CTTTGTACCAAATTTTAACTAAACCGT 57.481 29.630 0.00 0.00 0.00 4.83
4149 4244 9.518906 ACTTTGTACCAAATTTTAACTAAACCG 57.481 29.630 0.00 0.00 0.00 4.44
4183 4278 5.291128 CGTCCTAAAATAAGTGTCGCTGATT 59.709 40.000 0.00 0.00 29.37 2.57
4186 4281 3.306166 CCGTCCTAAAATAAGTGTCGCTG 59.694 47.826 0.00 0.00 0.00 5.18
4202 4297 3.684408 ATAAAGTACTCCCTCCGTCCT 57.316 47.619 0.00 0.00 0.00 3.85
4203 4298 4.892345 AGTTATAAAGTACTCCCTCCGTCC 59.108 45.833 0.00 0.00 0.00 4.79
4279 4386 6.954684 TGGGCTTGGTTGTAAATTATTTCCTA 59.045 34.615 0.00 0.00 0.00 2.94
4281 4388 6.043854 TGGGCTTGGTTGTAAATTATTTCC 57.956 37.500 0.00 0.00 0.00 3.13
4284 4391 7.971368 ACTATGGGCTTGGTTGTAAATTATT 57.029 32.000 0.00 0.00 0.00 1.40
4285 4392 7.971368 AACTATGGGCTTGGTTGTAAATTAT 57.029 32.000 0.00 0.00 0.00 1.28
4287 4394 6.680148 AAACTATGGGCTTGGTTGTAAATT 57.320 33.333 0.00 0.00 0.00 1.82
4288 4395 6.680148 AAAACTATGGGCTTGGTTGTAAAT 57.320 33.333 0.00 0.00 0.00 1.40
4339 4447 6.534793 ACCACATTTTTAGCAAACTTGTTCAG 59.465 34.615 0.00 0.00 0.00 3.02
4370 4478 4.943705 ACATTAAGCCAGGATGTTACACAG 59.056 41.667 0.00 0.00 30.22 3.66
4371 4479 4.917385 ACATTAAGCCAGGATGTTACACA 58.083 39.130 0.00 0.00 30.22 3.72
4372 4480 5.897377 AACATTAAGCCAGGATGTTACAC 57.103 39.130 2.96 0.00 40.95 2.90
4373 4481 6.007076 TCAAACATTAAGCCAGGATGTTACA 58.993 36.000 4.97 0.00 41.65 2.41
4374 4482 6.509418 TCAAACATTAAGCCAGGATGTTAC 57.491 37.500 4.97 0.00 41.65 2.50
4375 4483 6.945435 TCTTCAAACATTAAGCCAGGATGTTA 59.055 34.615 4.97 0.00 41.65 2.41
4376 4484 5.774690 TCTTCAAACATTAAGCCAGGATGTT 59.225 36.000 0.00 0.00 43.65 2.71
4377 4485 5.324409 TCTTCAAACATTAAGCCAGGATGT 58.676 37.500 0.00 0.00 35.65 3.06
4378 4486 5.902613 TCTTCAAACATTAAGCCAGGATG 57.097 39.130 0.00 0.00 0.00 3.51
4379 4487 6.012745 ACTTCTTCAAACATTAAGCCAGGAT 58.987 36.000 0.00 0.00 0.00 3.24
4380 4488 5.385198 ACTTCTTCAAACATTAAGCCAGGA 58.615 37.500 0.00 0.00 0.00 3.86
4381 4489 5.712152 ACTTCTTCAAACATTAAGCCAGG 57.288 39.130 0.00 0.00 0.00 4.45
4382 4490 5.853282 CGAACTTCTTCAAACATTAAGCCAG 59.147 40.000 0.00 0.00 0.00 4.85
4383 4491 5.757886 CGAACTTCTTCAAACATTAAGCCA 58.242 37.500 0.00 0.00 0.00 4.75
4384 4492 4.617223 GCGAACTTCTTCAAACATTAAGCC 59.383 41.667 0.00 0.00 0.00 4.35
4385 4493 5.452777 AGCGAACTTCTTCAAACATTAAGC 58.547 37.500 0.00 0.00 0.00 3.09
4386 4494 9.445786 TTTTAGCGAACTTCTTCAAACATTAAG 57.554 29.630 0.00 0.00 0.00 1.85
4387 4495 9.790389 TTTTTAGCGAACTTCTTCAAACATTAA 57.210 25.926 0.00 0.00 0.00 1.40
4388 4496 9.959749 ATTTTTAGCGAACTTCTTCAAACATTA 57.040 25.926 0.00 0.00 0.00 1.90
4389 4497 8.755018 CATTTTTAGCGAACTTCTTCAAACATT 58.245 29.630 0.00 0.00 0.00 2.71
4390 4498 7.920682 ACATTTTTAGCGAACTTCTTCAAACAT 59.079 29.630 0.00 0.00 0.00 2.71
4391 4499 7.219917 CACATTTTTAGCGAACTTCTTCAAACA 59.780 33.333 0.00 0.00 0.00 2.83
4392 4500 7.305993 CCACATTTTTAGCGAACTTCTTCAAAC 60.306 37.037 0.00 0.00 0.00 2.93
4393 4501 6.695278 CCACATTTTTAGCGAACTTCTTCAAA 59.305 34.615 0.00 0.00 0.00 2.69
4394 4502 6.183360 ACCACATTTTTAGCGAACTTCTTCAA 60.183 34.615 0.00 0.00 0.00 2.69
4395 4503 5.298276 ACCACATTTTTAGCGAACTTCTTCA 59.702 36.000 0.00 0.00 0.00 3.02
4396 4504 5.758924 ACCACATTTTTAGCGAACTTCTTC 58.241 37.500 0.00 0.00 0.00 2.87
4397 4505 5.767816 ACCACATTTTTAGCGAACTTCTT 57.232 34.783 0.00 0.00 0.00 2.52
4398 4506 5.761234 TGTACCACATTTTTAGCGAACTTCT 59.239 36.000 0.00 0.00 0.00 2.85
4399 4507 5.849604 GTGTACCACATTTTTAGCGAACTTC 59.150 40.000 0.00 0.00 34.08 3.01
4400 4508 5.278120 GGTGTACCACATTTTTAGCGAACTT 60.278 40.000 0.00 0.00 35.86 2.66
4401 4509 4.214758 GGTGTACCACATTTTTAGCGAACT 59.785 41.667 0.00 0.00 35.86 3.01
4402 4510 4.469552 GGTGTACCACATTTTTAGCGAAC 58.530 43.478 0.00 0.00 35.86 3.95
4403 4511 3.502979 GGGTGTACCACATTTTTAGCGAA 59.497 43.478 3.11 0.00 39.85 4.70
4404 4512 3.075884 GGGTGTACCACATTTTTAGCGA 58.924 45.455 3.11 0.00 39.85 4.93
4405 4513 3.078837 AGGGTGTACCACATTTTTAGCG 58.921 45.455 3.11 0.00 43.89 4.26
4406 4514 5.650703 ACATAGGGTGTACCACATTTTTAGC 59.349 40.000 3.11 0.00 43.89 3.09
4407 4515 8.671028 GTTACATAGGGTGTACCACATTTTTAG 58.329 37.037 3.11 0.00 42.82 1.85
4408 4516 8.162085 TGTTACATAGGGTGTACCACATTTTTA 58.838 33.333 3.11 0.00 42.82 1.52
4409 4517 7.005296 TGTTACATAGGGTGTACCACATTTTT 58.995 34.615 3.11 0.00 42.82 1.94
4410 4518 6.544650 TGTTACATAGGGTGTACCACATTTT 58.455 36.000 3.11 0.00 42.82 1.82
4411 4519 6.129414 TGTTACATAGGGTGTACCACATTT 57.871 37.500 3.11 0.00 42.82 2.32
4412 4520 5.765576 TGTTACATAGGGTGTACCACATT 57.234 39.130 3.11 0.00 42.82 2.71
4413 4521 5.163237 GGATGTTACATAGGGTGTACCACAT 60.163 44.000 0.00 2.39 42.89 3.21
4414 4522 4.162698 GGATGTTACATAGGGTGTACCACA 59.837 45.833 0.00 0.00 42.82 4.17
4415 4523 4.407945 AGGATGTTACATAGGGTGTACCAC 59.592 45.833 0.00 0.00 42.82 4.16
4416 4524 4.407621 CAGGATGTTACATAGGGTGTACCA 59.592 45.833 0.00 0.00 42.82 3.25
4417 4525 4.202326 CCAGGATGTTACATAGGGTGTACC 60.202 50.000 0.00 0.00 42.82 3.34
4418 4526 4.742743 GCCAGGATGTTACATAGGGTGTAC 60.743 50.000 0.00 0.00 42.82 2.90
4419 4527 3.389983 GCCAGGATGTTACATAGGGTGTA 59.610 47.826 0.00 0.00 42.29 2.90
4420 4528 2.172717 GCCAGGATGTTACATAGGGTGT 59.827 50.000 0.00 0.00 44.95 4.16
4421 4529 2.439507 AGCCAGGATGTTACATAGGGTG 59.560 50.000 12.58 2.98 0.00 4.61
4422 4530 2.776665 AGCCAGGATGTTACATAGGGT 58.223 47.619 0.00 3.96 0.00 4.34
4423 4531 3.864789 AAGCCAGGATGTTACATAGGG 57.135 47.619 0.00 1.56 0.00 3.53
4464 4572 6.446781 AAGAAGATGCACCTTGTTGATATG 57.553 37.500 1.61 0.00 29.87 1.78
4465 4573 7.472334 AAAAGAAGATGCACCTTGTTGATAT 57.528 32.000 3.54 0.00 31.21 1.63
4487 4595 8.241367 GGTTCTTTGAAGATCGGCTTATAAAAA 58.759 33.333 0.00 0.00 36.83 1.94
4492 4600 4.200092 GGGTTCTTTGAAGATCGGCTTAT 58.800 43.478 0.00 0.00 36.83 1.73
4497 4606 2.489938 TGGGGTTCTTTGAAGATCGG 57.510 50.000 0.00 0.00 34.49 4.18
4506 4615 5.543790 AGCATGATTAACTTTGGGGTTCTTT 59.456 36.000 0.00 0.00 0.00 2.52
4524 4634 1.063912 CGCAATTTAAGCCGAGCATGA 59.936 47.619 0.00 0.00 0.00 3.07
4529 4639 4.530094 TTATCACGCAATTTAAGCCGAG 57.470 40.909 0.00 0.00 0.00 4.63
4531 4641 3.974401 CCATTATCACGCAATTTAAGCCG 59.026 43.478 0.00 0.00 0.00 5.52
4632 4743 3.950397 TCTGCTCACCGGTTTCAAATAT 58.050 40.909 2.97 0.00 0.00 1.28
4642 4753 1.459592 CGTAGTTTTTCTGCTCACCGG 59.540 52.381 0.00 0.00 0.00 5.28
4646 4757 2.286833 GTGCACGTAGTTTTTCTGCTCA 59.713 45.455 0.00 0.00 41.61 4.26
4666 4777 0.534203 CCACAGTTGGTTGGCTACGT 60.534 55.000 0.00 0.00 38.23 3.57
4676 4787 5.714689 TGTTGTGCACAAACCACAGTTGG 62.715 47.826 32.61 0.00 43.34 3.77
4689 4800 3.679502 GGGCTAAAAATCATGTTGTGCAC 59.320 43.478 10.75 10.75 0.00 4.57
4690 4801 3.613671 CGGGCTAAAAATCATGTTGTGCA 60.614 43.478 0.00 0.00 0.00 4.57
4691 4802 2.923020 CGGGCTAAAAATCATGTTGTGC 59.077 45.455 0.00 0.00 0.00 4.57
4692 4803 4.173036 ACGGGCTAAAAATCATGTTGTG 57.827 40.909 0.00 0.00 0.00 3.33
4693 4804 4.864704 AACGGGCTAAAAATCATGTTGT 57.135 36.364 0.00 0.00 0.00 3.32
4694 4805 6.183360 GCTAAAACGGGCTAAAAATCATGTTG 60.183 38.462 0.00 0.00 0.00 3.33
4695 4806 5.867174 GCTAAAACGGGCTAAAAATCATGTT 59.133 36.000 0.00 0.00 0.00 2.71
4696 4807 5.185056 AGCTAAAACGGGCTAAAAATCATGT 59.815 36.000 0.00 0.00 37.00 3.21
4697 4808 5.650543 AGCTAAAACGGGCTAAAAATCATG 58.349 37.500 0.00 0.00 37.00 3.07
4698 4809 5.417580 TGAGCTAAAACGGGCTAAAAATCAT 59.582 36.000 0.00 0.00 39.05 2.45
4699 4810 4.762765 TGAGCTAAAACGGGCTAAAAATCA 59.237 37.500 0.00 0.00 39.05 2.57
4700 4811 5.305139 TGAGCTAAAACGGGCTAAAAATC 57.695 39.130 0.00 0.00 39.05 2.17
4701 4812 5.243060 AGTTGAGCTAAAACGGGCTAAAAAT 59.757 36.000 6.20 0.00 39.05 1.82
4702 4813 4.581409 AGTTGAGCTAAAACGGGCTAAAAA 59.419 37.500 6.20 0.00 39.05 1.94
4703 4814 4.139038 AGTTGAGCTAAAACGGGCTAAAA 58.861 39.130 6.20 0.00 39.05 1.52
4704 4815 3.746940 AGTTGAGCTAAAACGGGCTAAA 58.253 40.909 6.20 0.00 39.05 1.85
4705 4816 3.412237 AGTTGAGCTAAAACGGGCTAA 57.588 42.857 6.20 0.00 39.05 3.09
4706 4817 3.118884 CCTAGTTGAGCTAAAACGGGCTA 60.119 47.826 6.20 0.00 39.05 3.93
4707 4818 2.354805 CCTAGTTGAGCTAAAACGGGCT 60.355 50.000 6.20 0.00 41.88 5.19
4708 4819 2.007608 CCTAGTTGAGCTAAAACGGGC 58.992 52.381 6.20 0.00 32.65 6.13
4709 4820 2.007608 GCCTAGTTGAGCTAAAACGGG 58.992 52.381 15.76 15.76 32.65 5.28
4710 4821 2.007608 GGCCTAGTTGAGCTAAAACGG 58.992 52.381 0.00 4.42 32.65 4.44
4711 4822 2.007608 GGGCCTAGTTGAGCTAAAACG 58.992 52.381 0.84 0.00 32.65 3.60
4712 4823 3.010420 CTGGGCCTAGTTGAGCTAAAAC 58.990 50.000 8.21 4.00 0.00 2.43
4713 4824 2.642807 ACTGGGCCTAGTTGAGCTAAAA 59.357 45.455 17.38 0.00 0.00 1.52
4714 4825 2.266279 ACTGGGCCTAGTTGAGCTAAA 58.734 47.619 17.38 0.00 0.00 1.85
4715 4826 1.952621 ACTGGGCCTAGTTGAGCTAA 58.047 50.000 17.38 0.00 0.00 3.09
4716 4827 1.952621 AACTGGGCCTAGTTGAGCTA 58.047 50.000 31.45 0.00 39.33 3.32
4717 4828 1.952621 TAACTGGGCCTAGTTGAGCT 58.047 50.000 36.89 18.55 40.85 4.09
4718 4829 2.027100 ACTTAACTGGGCCTAGTTGAGC 60.027 50.000 37.73 8.83 43.92 4.26
4719 4830 3.260884 TGACTTAACTGGGCCTAGTTGAG 59.739 47.826 36.79 36.79 44.94 3.02
4720 4831 3.007614 GTGACTTAACTGGGCCTAGTTGA 59.992 47.826 36.89 29.79 40.85 3.18
4721 4832 3.244422 TGTGACTTAACTGGGCCTAGTTG 60.244 47.826 36.89 25.95 40.85 3.16
4722 4833 2.976882 TGTGACTTAACTGGGCCTAGTT 59.023 45.455 33.55 33.55 43.03 2.24
4723 4834 2.302157 GTGTGACTTAACTGGGCCTAGT 59.698 50.000 17.38 17.38 0.00 2.57
4724 4835 2.301870 TGTGTGACTTAACTGGGCCTAG 59.698 50.000 15.72 15.72 0.00 3.02
4725 4836 2.331166 TGTGTGACTTAACTGGGCCTA 58.669 47.619 4.53 0.00 0.00 3.93
4726 4837 1.136828 TGTGTGACTTAACTGGGCCT 58.863 50.000 4.53 0.00 0.00 5.19
4727 4838 1.812571 CATGTGTGACTTAACTGGGCC 59.187 52.381 0.00 0.00 0.00 5.80
4728 4839 1.200020 GCATGTGTGACTTAACTGGGC 59.800 52.381 0.00 0.00 0.00 5.36
4729 4840 2.503331 TGCATGTGTGACTTAACTGGG 58.497 47.619 0.00 0.00 0.00 4.45
4730 4841 3.058016 CCTTGCATGTGTGACTTAACTGG 60.058 47.826 0.00 0.00 0.00 4.00
4731 4842 3.058016 CCCTTGCATGTGTGACTTAACTG 60.058 47.826 0.00 0.00 0.00 3.16
4732 4843 3.149196 CCCTTGCATGTGTGACTTAACT 58.851 45.455 0.00 0.00 0.00 2.24
4733 4844 2.228822 CCCCTTGCATGTGTGACTTAAC 59.771 50.000 0.00 0.00 0.00 2.01
4734 4845 2.513753 CCCCTTGCATGTGTGACTTAA 58.486 47.619 0.00 0.00 0.00 1.85
4735 4846 1.886222 GCCCCTTGCATGTGTGACTTA 60.886 52.381 0.00 0.00 40.77 2.24
4736 4847 1.181098 GCCCCTTGCATGTGTGACTT 61.181 55.000 0.00 0.00 40.77 3.01
4737 4848 1.604593 GCCCCTTGCATGTGTGACT 60.605 57.895 0.00 0.00 40.77 3.41
4738 4849 2.639327 GGCCCCTTGCATGTGTGAC 61.639 63.158 0.00 0.00 43.89 3.67
4739 4850 2.283101 GGCCCCTTGCATGTGTGA 60.283 61.111 0.00 0.00 43.89 3.58
4740 4851 1.756408 TTTGGCCCCTTGCATGTGTG 61.756 55.000 0.00 0.00 43.89 3.82
4741 4852 1.053264 TTTTGGCCCCTTGCATGTGT 61.053 50.000 0.00 0.00 43.89 3.72
4742 4853 0.108207 TTTTTGGCCCCTTGCATGTG 59.892 50.000 0.00 0.00 43.89 3.21
4743 4854 0.108396 GTTTTTGGCCCCTTGCATGT 59.892 50.000 0.00 0.00 43.89 3.21
4744 4855 0.606130 GGTTTTTGGCCCCTTGCATG 60.606 55.000 0.00 0.00 43.89 4.06
4745 4856 1.059006 TGGTTTTTGGCCCCTTGCAT 61.059 50.000 0.00 0.00 43.89 3.96
4746 4857 1.690633 TGGTTTTTGGCCCCTTGCA 60.691 52.632 0.00 0.00 43.89 4.08
4747 4858 1.071299 CTGGTTTTTGGCCCCTTGC 59.929 57.895 0.00 0.00 40.16 4.01
4748 4859 0.106521 CACTGGTTTTTGGCCCCTTG 59.893 55.000 0.00 0.00 0.00 3.61
4749 4860 1.695114 GCACTGGTTTTTGGCCCCTT 61.695 55.000 0.00 0.00 0.00 3.95
4750 4861 2.140138 GCACTGGTTTTTGGCCCCT 61.140 57.895 0.00 0.00 0.00 4.79
4751 4862 2.425592 GCACTGGTTTTTGGCCCC 59.574 61.111 0.00 0.00 0.00 5.80
4752 4863 2.028925 CGCACTGGTTTTTGGCCC 59.971 61.111 0.00 0.00 0.00 5.80
4753 4864 2.028925 CCGCACTGGTTTTTGGCC 59.971 61.111 0.00 0.00 0.00 5.36
4754 4865 1.457009 TACCCGCACTGGTTTTTGGC 61.457 55.000 0.00 0.00 39.91 4.52
4755 4866 1.033574 TTACCCGCACTGGTTTTTGG 58.966 50.000 0.00 0.00 39.91 3.28
4756 4867 1.679153 AGTTACCCGCACTGGTTTTTG 59.321 47.619 0.00 0.00 39.91 2.44
4757 4868 2.061509 AGTTACCCGCACTGGTTTTT 57.938 45.000 0.00 0.00 39.91 1.94
4758 4869 2.934886 TAGTTACCCGCACTGGTTTT 57.065 45.000 0.00 0.00 39.91 2.43
4759 4870 2.880268 GTTTAGTTACCCGCACTGGTTT 59.120 45.455 0.00 0.00 39.91 3.27
4760 4871 2.105306 AGTTTAGTTACCCGCACTGGTT 59.895 45.455 0.00 0.00 39.91 3.67
4761 4872 1.695788 AGTTTAGTTACCCGCACTGGT 59.304 47.619 0.00 0.00 42.62 4.00
4762 4873 2.073816 CAGTTTAGTTACCCGCACTGG 58.926 52.381 0.00 0.00 37.55 4.00
4763 4874 2.073816 CCAGTTTAGTTACCCGCACTG 58.926 52.381 0.00 0.00 32.96 3.66
4764 4875 1.609841 GCCAGTTTAGTTACCCGCACT 60.610 52.381 0.00 0.00 0.00 4.40
4765 4876 0.800631 GCCAGTTTAGTTACCCGCAC 59.199 55.000 0.00 0.00 0.00 5.34
4766 4877 0.671163 CGCCAGTTTAGTTACCCGCA 60.671 55.000 0.00 0.00 0.00 5.69
4767 4878 1.363885 CCGCCAGTTTAGTTACCCGC 61.364 60.000 0.00 0.00 0.00 6.13
4768 4879 0.741927 CCCGCCAGTTTAGTTACCCG 60.742 60.000 0.00 0.00 0.00 5.28
4769 4880 0.325933 ACCCGCCAGTTTAGTTACCC 59.674 55.000 0.00 0.00 0.00 3.69
4770 4881 2.189594 AACCCGCCAGTTTAGTTACC 57.810 50.000 0.00 0.00 0.00 2.85
4771 4882 4.572985 AAAAACCCGCCAGTTTAGTTAC 57.427 40.909 0.00 0.00 39.00 2.50
4792 4903 5.728344 GCTTGCGTCTGTACTGTGTTAAAAA 60.728 40.000 0.00 0.00 0.00 1.94
4793 4904 4.260456 GCTTGCGTCTGTACTGTGTTAAAA 60.260 41.667 0.00 0.00 0.00 1.52
4794 4905 3.246699 GCTTGCGTCTGTACTGTGTTAAA 59.753 43.478 0.00 0.00 0.00 1.52
4795 4906 2.798283 GCTTGCGTCTGTACTGTGTTAA 59.202 45.455 0.00 0.00 0.00 2.01
4796 4907 2.400399 GCTTGCGTCTGTACTGTGTTA 58.600 47.619 0.00 0.00 0.00 2.41
4797 4908 1.217882 GCTTGCGTCTGTACTGTGTT 58.782 50.000 0.00 0.00 0.00 3.32
4798 4909 0.939577 CGCTTGCGTCTGTACTGTGT 60.940 55.000 6.86 0.00 0.00 3.72
4799 4910 1.775344 CGCTTGCGTCTGTACTGTG 59.225 57.895 6.86 0.00 0.00 3.66
4800 4911 2.022129 GCGCTTGCGTCTGTACTGT 61.022 57.895 16.38 0.00 0.00 3.55
4801 4912 1.678269 GAGCGCTTGCGTCTGTACTG 61.678 60.000 13.26 0.00 45.69 2.74
4802 4913 1.444553 GAGCGCTTGCGTCTGTACT 60.445 57.895 13.26 3.73 45.69 2.73
4803 4914 1.078759 ATGAGCGCTTGCGTCTGTAC 61.079 55.000 13.26 0.00 45.69 2.90
4804 4915 0.454196 TATGAGCGCTTGCGTCTGTA 59.546 50.000 13.26 6.26 45.69 2.74
4805 4916 1.078759 GTATGAGCGCTTGCGTCTGT 61.079 55.000 13.26 7.66 45.69 3.41
4806 4917 1.078201 TGTATGAGCGCTTGCGTCTG 61.078 55.000 13.26 0.00 45.69 3.51
4807 4918 0.179100 ATGTATGAGCGCTTGCGTCT 60.179 50.000 13.26 13.17 45.69 4.18
4808 4919 0.042708 CATGTATGAGCGCTTGCGTC 60.043 55.000 13.26 12.36 45.69 5.19
4809 4920 2.009108 CATGTATGAGCGCTTGCGT 58.991 52.632 13.26 3.24 45.69 5.24
4810 4921 1.368493 GCATGTATGAGCGCTTGCG 60.368 57.895 13.26 10.90 45.69 4.85
4811 4922 4.603216 GCATGTATGAGCGCTTGC 57.397 55.556 13.26 13.21 39.58 4.01
4818 4929 1.001746 AGGGATGAGCGCATGTATGAG 59.998 52.381 11.47 0.00 34.11 2.90
4819 4930 1.051008 AGGGATGAGCGCATGTATGA 58.949 50.000 11.47 0.00 34.11 2.15
4820 4931 2.749280 TAGGGATGAGCGCATGTATG 57.251 50.000 11.47 0.00 34.11 2.39
4821 4932 2.833943 TCATAGGGATGAGCGCATGTAT 59.166 45.455 11.47 0.00 37.15 2.29
4822 4933 2.247358 TCATAGGGATGAGCGCATGTA 58.753 47.619 11.47 0.00 37.15 2.29
4823 4934 1.051008 TCATAGGGATGAGCGCATGT 58.949 50.000 11.47 0.00 37.15 3.21
4824 4935 1.802960 GTTCATAGGGATGAGCGCATG 59.197 52.381 11.47 1.33 43.03 4.06
4825 4936 2.175878 GTTCATAGGGATGAGCGCAT 57.824 50.000 11.47 1.26 43.03 4.73
4826 4937 3.686622 GTTCATAGGGATGAGCGCA 57.313 52.632 11.47 0.00 43.03 6.09
4829 4940 2.175878 ATGCGTTCATAGGGATGAGC 57.824 50.000 0.00 0.00 43.03 4.26
4830 4941 3.990469 GTGTATGCGTTCATAGGGATGAG 59.010 47.826 0.00 0.00 43.03 2.90
4831 4942 3.552068 CGTGTATGCGTTCATAGGGATGA 60.552 47.826 0.00 0.00 40.45 2.92
4832 4943 2.731451 CGTGTATGCGTTCATAGGGATG 59.269 50.000 0.00 0.00 35.96 3.51
4833 4944 3.026630 CGTGTATGCGTTCATAGGGAT 57.973 47.619 0.00 0.00 35.96 3.85
4834 4945 2.502213 CGTGTATGCGTTCATAGGGA 57.498 50.000 0.00 0.00 35.96 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.