Multiple sequence alignment - TraesCS3D01G075700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G075700 chr3D 100.000 3906 0 0 1 3906 36580249 36584154 0.000000e+00 7214
1 TraesCS3D01G075700 chr3A 93.606 3300 157 34 8 3285 46992508 46995775 0.000000e+00 4876
2 TraesCS3D01G075700 chr3A 88.199 483 30 6 3427 3906 46995717 46996175 5.700000e-153 551
3 TraesCS3D01G075700 chr3B 94.593 2737 103 25 1 2722 59184815 59187521 0.000000e+00 4193
4 TraesCS3D01G075700 chr3B 89.929 1132 70 21 2786 3906 59187533 59188631 0.000000e+00 1419
5 TraesCS3D01G075700 chr3B 79.128 321 33 15 2920 3223 59188499 59188802 1.430000e-44 191


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G075700 chr3D 36580249 36584154 3905 False 7214.000000 7214 100.000000 1 3906 1 chr3D.!!$F1 3905
1 TraesCS3D01G075700 chr3A 46992508 46996175 3667 False 2713.500000 4876 90.902500 8 3906 2 chr3A.!!$F1 3898
2 TraesCS3D01G075700 chr3B 59184815 59188802 3987 False 1934.333333 4193 87.883333 1 3906 3 chr3B.!!$F1 3905

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
681 699 0.451383 TCGCATGCTGTTAATGGTGC 59.549 50.000 17.13 0.0 0.00 5.01 F
1422 1443 1.000396 GGACAGCATTTGGGGAGCT 60.000 57.895 0.00 0.0 39.63 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2379 2400 0.251653 AGGTCCTGTCGTGCCTCTTA 60.252 55.0 0.0 0.0 0.0 2.10 R
3269 3292 0.247814 CATCTTTGCTTACGCCGCAG 60.248 55.0 0.0 0.0 38.8 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.600916 GCTGGGGGTTCACACTCAC 60.601 63.158 0.00 0.00 0.00 3.51
23 24 1.133915 TGGGGGTTCACACTCACTTTC 60.134 52.381 0.00 0.00 0.00 2.62
29 30 1.865865 TCACACTCACTTTCGAAGGC 58.134 50.000 7.26 0.00 0.00 4.35
32 33 0.514691 CACTCACTTTCGAAGGCAGC 59.485 55.000 7.26 0.00 0.00 5.25
56 57 4.348656 TCGACACGACTATCATTGTAAGC 58.651 43.478 0.00 0.00 0.00 3.09
77 78 5.699839 AGCAATTTCACACGGTAGAAATTC 58.300 37.500 21.06 17.19 46.05 2.17
80 81 4.360951 TTTCACACGGTAGAAATTCCCT 57.639 40.909 4.42 0.00 0.00 4.20
82 83 4.730949 TCACACGGTAGAAATTCCCTAG 57.269 45.455 0.00 0.00 0.00 3.02
391 405 3.362797 TCGACTCGCGCACCTTCT 61.363 61.111 8.75 0.00 40.61 2.85
477 493 4.187694 GTTAGAACAGATCAGAGCAAGGG 58.812 47.826 0.00 0.00 0.00 3.95
478 494 2.264455 AGAACAGATCAGAGCAAGGGT 58.736 47.619 0.00 0.00 0.00 4.34
532 549 1.279025 TGGGGTGCTAGTGGGATTCC 61.279 60.000 0.00 0.00 0.00 3.01
546 563 2.357881 GGGATTCCCAAGGTTTACTCCC 60.358 54.545 17.36 0.00 44.65 4.30
594 611 3.492337 TCCGGGTGAAATTTTGCTTAGT 58.508 40.909 0.00 0.00 0.00 2.24
681 699 0.451383 TCGCATGCTGTTAATGGTGC 59.549 50.000 17.13 0.00 0.00 5.01
692 710 5.041951 TGTTAATGGTGCTCGTTCATTTC 57.958 39.130 0.00 0.00 33.72 2.17
804 822 2.882955 TTCCAAGGAAGGAAGGGCT 58.117 52.632 0.00 0.00 42.56 5.19
1233 1254 2.126071 ATCAACGTCCCGCTGTCG 60.126 61.111 0.00 0.00 0.00 4.35
1269 1290 2.413142 GCCTGCATTGTGGAGCCTC 61.413 63.158 0.00 0.00 34.22 4.70
1278 1299 1.300697 GTGGAGCCTCGACACGTTT 60.301 57.895 1.60 0.00 0.00 3.60
1422 1443 1.000396 GGACAGCATTTGGGGAGCT 60.000 57.895 0.00 0.00 39.63 4.09
1629 1650 1.841302 TTGGGAAGATGCAGCTCCGT 61.841 55.000 4.22 0.00 0.00 4.69
1698 1719 1.152860 TGCGGACAAGGGCTTTTCA 60.153 52.632 0.00 0.00 0.00 2.69
2130 2151 3.885297 CGATGGCCAATAATTCCTGTTCT 59.115 43.478 10.96 0.00 0.00 3.01
2160 2181 2.300437 GCAAGAGGTAGAAGTCCACACT 59.700 50.000 0.00 0.00 0.00 3.55
2193 2214 1.352017 TGGATGCATGACTTCACTGGT 59.648 47.619 2.46 0.00 0.00 4.00
2235 2256 1.271054 CCTGTTACTGCTGCCAAGACT 60.271 52.381 0.00 0.00 0.00 3.24
2379 2400 2.123726 GCCCGGATGCCCTTCATT 60.124 61.111 0.73 0.00 35.05 2.57
2436 2457 3.324930 CCTGAGCACTGCCCTCCA 61.325 66.667 0.00 0.00 0.00 3.86
2505 2526 2.987149 CGCCAAGATCGAAGCGTATTAT 59.013 45.455 15.29 0.00 43.45 1.28
2667 2688 8.935614 AAAACATTTTAGCCTCTTACTAGGTT 57.064 30.769 0.00 0.00 39.02 3.50
2735 2757 4.724074 TCATCATGCCTGGATCAAAAAC 57.276 40.909 0.00 0.00 0.00 2.43
2750 2772 7.554476 TGGATCAAAAACCGGAAATTTTCTTTT 59.446 29.630 9.46 0.00 0.00 2.27
2754 2776 2.749776 ACCGGAAATTTTCTTTTGGCG 58.250 42.857 9.46 3.28 0.00 5.69
2927 2949 6.967199 GTGAAACATGGCAAAGCTAATAGTAC 59.033 38.462 0.00 0.00 36.32 2.73
2929 2951 6.927294 AACATGGCAAAGCTAATAGTACTC 57.073 37.500 0.00 0.00 0.00 2.59
2930 2952 5.050490 ACATGGCAAAGCTAATAGTACTCG 58.950 41.667 0.00 0.00 0.00 4.18
2931 2953 4.730949 TGGCAAAGCTAATAGTACTCGT 57.269 40.909 0.00 0.00 0.00 4.18
2932 2954 5.840243 TGGCAAAGCTAATAGTACTCGTA 57.160 39.130 0.00 0.00 0.00 3.43
2933 2955 6.401047 TGGCAAAGCTAATAGTACTCGTAT 57.599 37.500 0.00 0.00 0.00 3.06
2934 2956 7.514784 TGGCAAAGCTAATAGTACTCGTATA 57.485 36.000 0.00 0.00 0.00 1.47
2936 2958 9.234827 TGGCAAAGCTAATAGTACTCGTATATA 57.765 33.333 0.00 0.00 0.00 0.86
3214 3237 1.493950 CGGTGATGCTGAATCTCGCC 61.494 60.000 0.00 0.00 36.15 5.54
3232 3255 2.815647 GTTTCTGGCTCGCTCCGG 60.816 66.667 0.00 0.00 0.00 5.14
3261 3284 0.539051 CTCGGTTCATCCTGGCTCTT 59.461 55.000 0.00 0.00 0.00 2.85
3269 3292 1.919600 ATCCTGGCTCTTCTGGGTGC 61.920 60.000 0.00 0.00 0.00 5.01
3272 3295 2.749441 GGCTCTTCTGGGTGCTGC 60.749 66.667 0.00 0.00 0.00 5.25
3273 3296 3.123620 GCTCTTCTGGGTGCTGCG 61.124 66.667 0.00 0.00 0.00 5.18
3299 3322 3.863142 AGCAAAGATGACATTTCTGCC 57.137 42.857 0.86 0.00 0.00 4.85
3325 3348 3.610040 ATTCGCTGACTTGTATGACCA 57.390 42.857 0.00 0.00 0.00 4.02
3342 3365 2.504367 ACCAGGATCGTTTTGGTCTTG 58.496 47.619 0.00 0.00 41.19 3.02
3355 3379 6.515832 GTTTTGGTCTTGGATGAAAATCTGT 58.484 36.000 0.00 0.00 0.00 3.41
3357 3381 7.831691 TTTGGTCTTGGATGAAAATCTGTTA 57.168 32.000 0.00 0.00 0.00 2.41
3359 3383 7.395190 TGGTCTTGGATGAAAATCTGTTATG 57.605 36.000 0.00 0.00 0.00 1.90
3376 3400 5.143660 TGTTATGTGACTTGAATTTTCGCG 58.856 37.500 0.00 0.00 0.00 5.87
3387 3411 3.423867 TGAATTTTCGCGCTTAAGTTTGC 59.576 39.130 5.56 5.48 0.00 3.68
3397 3421 4.160736 GCTTAAGTTTGCGATTTCTGGT 57.839 40.909 4.02 0.00 0.00 4.00
3411 3435 3.917329 TTCTGGTACTGAACGTCTGAG 57.083 47.619 0.00 0.00 41.26 3.35
3413 3437 3.687125 TCTGGTACTGAACGTCTGAGAT 58.313 45.455 0.00 0.00 32.07 2.75
3495 3519 6.841443 CTGTGTGAGCAAATTAGAGGATAG 57.159 41.667 0.00 0.00 0.00 2.08
3513 3537 5.412594 AGGATAGTTGTACATGTTTGCAGTG 59.587 40.000 2.30 0.00 0.00 3.66
3570 3594 3.548745 TCTTGACTGATATGTGGCTGG 57.451 47.619 0.00 0.00 0.00 4.85
3600 3624 5.558818 AGTGATGATCAGAGCTCAGTTTTT 58.441 37.500 17.77 0.00 0.00 1.94
3614 3638 5.681543 GCTCAGTTTTTACAGCAGTAACAAC 59.318 40.000 18.20 18.20 44.98 3.32
3659 3693 2.093394 TCGGGATGCATTTCTCGGTTTA 60.093 45.455 9.59 0.00 40.07 2.01
3660 3694 2.878406 CGGGATGCATTTCTCGGTTTAT 59.122 45.455 0.00 0.00 35.95 1.40
3661 3695 3.058914 CGGGATGCATTTCTCGGTTTATC 60.059 47.826 0.00 0.00 35.95 1.75
3662 3696 3.253432 GGGATGCATTTCTCGGTTTATCC 59.747 47.826 0.00 0.00 33.72 2.59
3663 3697 4.137543 GGATGCATTTCTCGGTTTATCCT 58.862 43.478 0.00 0.00 32.20 3.24
3664 3698 4.023707 GGATGCATTTCTCGGTTTATCCTG 60.024 45.833 0.00 0.00 32.20 3.86
3665 3699 4.214986 TGCATTTCTCGGTTTATCCTGA 57.785 40.909 0.00 0.00 0.00 3.86
3666 3700 3.938963 TGCATTTCTCGGTTTATCCTGAC 59.061 43.478 0.00 0.00 0.00 3.51
3667 3701 4.192317 GCATTTCTCGGTTTATCCTGACT 58.808 43.478 0.00 0.00 0.00 3.41
3668 3702 4.636206 GCATTTCTCGGTTTATCCTGACTT 59.364 41.667 0.00 0.00 0.00 3.01
3669 3703 5.123979 GCATTTCTCGGTTTATCCTGACTTT 59.876 40.000 0.00 0.00 0.00 2.66
3670 3704 6.349363 GCATTTCTCGGTTTATCCTGACTTTT 60.349 38.462 0.00 0.00 0.00 2.27
3712 3752 1.727335 GCTGTGTAAGCGAAGGAGAAC 59.273 52.381 0.00 0.00 43.45 3.01
3757 3797 5.584551 AAGGATACATATTCCCCTTGACC 57.415 43.478 0.00 0.00 36.03 4.02
3823 3866 6.470278 CCTGTGCATATATTCTGAGGATTGA 58.530 40.000 0.00 0.00 0.00 2.57
3846 3889 9.679661 TTGAGTTCATAATAATTTGGACAGCTA 57.320 29.630 0.00 0.00 0.00 3.32
3891 3934 4.976116 CGATATCTCGCTGTTGTAATCACA 59.024 41.667 0.34 0.00 38.20 3.58
3892 3935 5.631096 CGATATCTCGCTGTTGTAATCACAT 59.369 40.000 0.34 0.00 38.20 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.923358 AAAGTGAGTGTGAACCCCCA 59.077 50.000 0.00 0.00 0.00 4.96
5 6 1.202604 TCGAAAGTGAGTGTGAACCCC 60.203 52.381 0.00 0.00 0.00 4.95
14 15 0.946221 CGCTGCCTTCGAAAGTGAGT 60.946 55.000 0.00 0.00 0.00 3.41
19 20 1.733041 TCGACGCTGCCTTCGAAAG 60.733 57.895 16.08 0.00 38.56 2.62
23 24 3.470567 GTGTCGACGCTGCCTTCG 61.471 66.667 21.55 11.05 34.42 3.79
41 42 7.426456 CGTGTGAAATTGCTTACAATGATAGTC 59.574 37.037 0.00 0.00 45.90 2.59
43 44 6.688385 CCGTGTGAAATTGCTTACAATGATAG 59.312 38.462 0.00 0.00 45.90 2.08
49 50 5.057819 TCTACCGTGTGAAATTGCTTACAA 58.942 37.500 0.00 0.00 40.87 2.41
56 57 5.183140 AGGGAATTTCTACCGTGTGAAATTG 59.817 40.000 21.35 0.00 46.44 2.32
162 170 4.340097 CGTTTTCCCCAGTTTACCTTTTCT 59.660 41.667 0.00 0.00 0.00 2.52
163 171 4.613944 CGTTTTCCCCAGTTTACCTTTTC 58.386 43.478 0.00 0.00 0.00 2.29
165 173 2.363038 GCGTTTTCCCCAGTTTACCTTT 59.637 45.455 0.00 0.00 0.00 3.11
168 176 0.239082 CGCGTTTTCCCCAGTTTACC 59.761 55.000 0.00 0.00 0.00 2.85
169 177 0.239082 CCGCGTTTTCCCCAGTTTAC 59.761 55.000 4.92 0.00 0.00 2.01
170 178 0.179023 ACCGCGTTTTCCCCAGTTTA 60.179 50.000 4.92 0.00 0.00 2.01
171 179 1.038681 AACCGCGTTTTCCCCAGTTT 61.039 50.000 4.92 0.00 0.00 2.66
172 180 1.454295 AACCGCGTTTTCCCCAGTT 60.454 52.632 4.92 0.00 0.00 3.16
173 181 2.190841 CAACCGCGTTTTCCCCAGT 61.191 57.895 4.92 0.00 0.00 4.00
174 182 2.642700 CAACCGCGTTTTCCCCAG 59.357 61.111 4.92 0.00 0.00 4.45
175 183 3.597728 GCAACCGCGTTTTCCCCA 61.598 61.111 4.92 0.00 0.00 4.96
292 305 1.133482 GGGAAGAGAGAGGAGAGGGAG 60.133 61.905 0.00 0.00 0.00 4.30
410 424 3.119096 GAGACCGCTGTTTCCGCC 61.119 66.667 0.00 0.00 0.00 6.13
411 425 3.479269 CGAGACCGCTGTTTCCGC 61.479 66.667 0.00 0.00 0.00 5.54
532 549 1.094785 CATGCGGGAGTAAACCTTGG 58.905 55.000 0.00 0.00 0.00 3.61
546 563 1.780806 ATCTGCTCTCGAATCATGCG 58.219 50.000 0.00 0.00 0.00 4.73
594 611 4.524802 TTTCCCCGTAGATACCTACAGA 57.475 45.455 0.00 0.00 44.22 3.41
611 628 2.747446 TGTTCTAAGCAAGCCGATTTCC 59.253 45.455 0.00 0.00 0.00 3.13
692 710 6.715464 ACAAAAGTTACTTCTCACAATCGTG 58.285 36.000 0.00 0.00 45.08 4.35
802 820 1.475441 CGAGATTTGCGACGAGGAGC 61.475 60.000 0.00 0.00 0.00 4.70
803 821 0.098905 TCGAGATTTGCGACGAGGAG 59.901 55.000 0.00 0.00 32.09 3.69
804 822 0.738975 ATCGAGATTTGCGACGAGGA 59.261 50.000 0.00 0.00 40.94 3.71
897 915 1.074623 CTGCCTCTCCTCCCCTGAT 60.075 63.158 0.00 0.00 0.00 2.90
944 965 2.485124 CCTATCCTTGCCTGCTCTTCTG 60.485 54.545 0.00 0.00 0.00 3.02
1269 1290 3.227452 TCGAAAATGTCAAACGTGTCG 57.773 42.857 0.00 0.00 30.92 4.35
1278 1299 1.083489 GGCCGACATCGAAAATGTCA 58.917 50.000 15.79 0.00 46.38 3.58
1422 1443 7.279615 TGAAGTAGTGATTGAAGAAGAACCAA 58.720 34.615 0.00 0.00 0.00 3.67
1494 1515 2.187946 CCGGTGATGCTCCCAGAC 59.812 66.667 0.00 0.00 0.00 3.51
1629 1650 4.608269 TGGAATGCCCATTCATGAAACTA 58.392 39.130 13.09 0.00 46.77 2.24
1945 1966 1.589196 GAGAGGTATGTGCGACGCC 60.589 63.158 18.69 9.37 0.00 5.68
2130 2151 4.263727 ACTTCTACCTCTTGCTCTCTCTCA 60.264 45.833 0.00 0.00 0.00 3.27
2160 2181 1.221566 CATCCATGACGGCTCACCA 59.778 57.895 0.00 0.00 34.57 4.17
2193 2214 2.412525 CTTGCGTGCTTTGCCACA 59.587 55.556 0.00 0.00 35.47 4.17
2235 2256 6.546403 GGTAGCCTTCATCATCCTCGTATATA 59.454 42.308 0.00 0.00 0.00 0.86
2367 2388 2.936202 TGCCTCTTAATGAAGGGCATC 58.064 47.619 16.89 0.00 45.95 3.91
2379 2400 0.251653 AGGTCCTGTCGTGCCTCTTA 60.252 55.000 0.00 0.00 0.00 2.10
2436 2457 2.282958 TCCCTCACGAACTCGCCT 60.283 61.111 0.00 0.00 44.43 5.52
2505 2526 0.957395 GTCCAGTACCGGTCTCGTCA 60.957 60.000 12.40 0.00 33.95 4.35
2667 2688 0.464193 CATGGCATGACACCGGATGA 60.464 55.000 22.91 0.00 0.00 2.92
2735 2757 1.459209 GCGCCAAAAGAAAATTTCCGG 59.541 47.619 0.00 0.00 0.00 5.14
2750 2772 1.358725 GCGACTAATGTTCAGCGCCA 61.359 55.000 2.29 0.00 38.67 5.69
2754 2776 4.806247 AGATAAGTGCGACTAATGTTCAGC 59.194 41.667 0.00 0.00 0.00 4.26
2932 2954 9.137459 CTCGGAATATACAGGGACAGAATATAT 57.863 37.037 0.00 0.00 0.00 0.86
2933 2955 7.560262 CCTCGGAATATACAGGGACAGAATATA 59.440 40.741 0.00 0.00 0.00 0.86
2934 2956 6.381420 CCTCGGAATATACAGGGACAGAATAT 59.619 42.308 0.00 0.00 0.00 1.28
2936 2958 4.528596 CCTCGGAATATACAGGGACAGAAT 59.471 45.833 0.00 0.00 0.00 2.40
2937 2959 3.895656 CCTCGGAATATACAGGGACAGAA 59.104 47.826 0.00 0.00 0.00 3.02
2938 2960 3.139584 TCCTCGGAATATACAGGGACAGA 59.860 47.826 0.00 0.00 0.00 3.41
3079 3101 3.532155 GCCGAGAGCGATCCAGGT 61.532 66.667 12.61 0.00 40.82 4.00
3214 3237 3.181967 CGGAGCGAGCCAGAAACG 61.182 66.667 0.00 0.00 0.00 3.60
3232 3255 2.276680 GAACCGAGAAATGCGCGC 60.277 61.111 27.26 27.26 38.55 6.86
3269 3292 0.247814 CATCTTTGCTTACGCCGCAG 60.248 55.000 0.00 0.00 38.80 5.18
3272 3295 1.075542 TGTCATCTTTGCTTACGCCG 58.924 50.000 0.00 0.00 34.43 6.46
3273 3296 3.764885 AATGTCATCTTTGCTTACGCC 57.235 42.857 0.00 0.00 34.43 5.68
3290 3313 4.751600 TCAGCGAATATACAGGCAGAAATG 59.248 41.667 0.00 0.00 0.00 2.32
3299 3322 6.363626 GGTCATACAAGTCAGCGAATATACAG 59.636 42.308 0.00 0.00 0.00 2.74
3325 3348 3.009033 TCATCCAAGACCAAAACGATCCT 59.991 43.478 0.00 0.00 0.00 3.24
3342 3365 8.044060 TCAAGTCACATAACAGATTTTCATCC 57.956 34.615 0.00 0.00 0.00 3.51
3355 3379 4.083537 AGCGCGAAAATTCAAGTCACATAA 60.084 37.500 12.10 0.00 0.00 1.90
3357 3381 2.226437 AGCGCGAAAATTCAAGTCACAT 59.774 40.909 12.10 0.00 0.00 3.21
3359 3383 2.316119 AGCGCGAAAATTCAAGTCAC 57.684 45.000 12.10 0.00 0.00 3.67
3376 3400 4.160736 ACCAGAAATCGCAAACTTAAGC 57.839 40.909 1.29 0.00 0.00 3.09
3387 3411 3.608506 CAGACGTTCAGTACCAGAAATCG 59.391 47.826 0.00 4.22 0.00 3.34
3397 3421 6.824196 AGATTCAGTATCTCAGACGTTCAGTA 59.176 38.462 0.00 0.00 39.46 2.74
3411 3435 2.362397 TGGAGCGGTGAGATTCAGTATC 59.638 50.000 0.00 0.00 0.00 2.24
3413 3437 1.751351 CTGGAGCGGTGAGATTCAGTA 59.249 52.381 0.00 0.00 0.00 2.74
3424 3448 1.152963 AGTTTTGTGCTGGAGCGGT 60.153 52.632 0.00 0.00 45.83 5.68
3490 3514 5.631026 CACTGCAAACATGTACAACTATCC 58.369 41.667 0.00 0.00 0.00 2.59
3495 3519 3.077229 TGCACTGCAAACATGTACAAC 57.923 42.857 0.00 0.00 34.76 3.32
3529 3553 4.642885 AGAAAGATCCTCTACCAAGTCTCG 59.357 45.833 0.00 0.00 0.00 4.04
3560 3584 7.315066 TCATCACTAATAATCCAGCCACATA 57.685 36.000 0.00 0.00 0.00 2.29
3570 3594 8.306038 ACTGAGCTCTGATCATCACTAATAATC 58.694 37.037 25.49 0.00 0.00 1.75
3600 3624 3.250744 GCGAGATGTTGTTACTGCTGTA 58.749 45.455 0.00 0.00 0.00 2.74
3614 3638 1.154225 GCCACAAAACGGCGAGATG 60.154 57.895 16.62 11.45 40.35 2.90
3659 3693 3.331889 AGATCACCCACAAAAGTCAGGAT 59.668 43.478 0.00 0.00 0.00 3.24
3660 3694 2.711009 AGATCACCCACAAAAGTCAGGA 59.289 45.455 0.00 0.00 0.00 3.86
3661 3695 3.077359 GAGATCACCCACAAAAGTCAGG 58.923 50.000 0.00 0.00 0.00 3.86
3662 3696 3.750130 CAGAGATCACCCACAAAAGTCAG 59.250 47.826 0.00 0.00 0.00 3.51
3663 3697 3.496692 CCAGAGATCACCCACAAAAGTCA 60.497 47.826 0.00 0.00 0.00 3.41
3664 3698 3.077359 CCAGAGATCACCCACAAAAGTC 58.923 50.000 0.00 0.00 0.00 3.01
3665 3699 2.224867 CCCAGAGATCACCCACAAAAGT 60.225 50.000 0.00 0.00 0.00 2.66
3666 3700 2.224867 ACCCAGAGATCACCCACAAAAG 60.225 50.000 0.00 0.00 0.00 2.27
3667 3701 1.780309 ACCCAGAGATCACCCACAAAA 59.220 47.619 0.00 0.00 0.00 2.44
3668 3702 1.444933 ACCCAGAGATCACCCACAAA 58.555 50.000 0.00 0.00 0.00 2.83
3669 3703 1.073763 CAACCCAGAGATCACCCACAA 59.926 52.381 0.00 0.00 0.00 3.33
3670 3704 0.692476 CAACCCAGAGATCACCCACA 59.308 55.000 0.00 0.00 0.00 4.17
3712 3752 3.405823 ACTGCAAATGTGGGGAAAATG 57.594 42.857 0.00 0.00 0.00 2.32
3814 3857 9.919416 TCCAAATTATTATGAACTCAATCCTCA 57.081 29.630 0.00 0.00 0.00 3.86
3823 3866 9.686683 AAGTAGCTGTCCAAATTATTATGAACT 57.313 29.630 0.00 0.00 0.00 3.01
3846 3889 3.164268 ACAGACTCTGCTCATGAGAAGT 58.836 45.455 26.94 22.93 35.52 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.