Multiple sequence alignment - TraesCS3D01G074700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G074700 chr3D 100.000 5545 0 0 1 5545 35897872 35892328 0.000000e+00 10240.0
1 TraesCS3D01G074700 chr3D 78.988 771 119 26 158 899 527670107 527669351 2.320000e-133 486.0
2 TraesCS3D01G074700 chr3D 77.140 853 153 23 1 830 600541259 600540426 1.820000e-124 457.0
3 TraesCS3D01G074700 chr3A 84.472 3761 318 120 1663 5315 46732220 46728618 0.000000e+00 3465.0
4 TraesCS3D01G074700 chr3A 78.726 691 56 38 944 1600 46732965 46732332 1.460000e-100 377.0
5 TraesCS3D01G074700 chr3A 86.598 97 12 1 1 96 703417537 703417633 7.600000e-19 106.0
6 TraesCS3D01G074700 chrUn 88.181 2073 132 42 3207 5217 39243723 39245744 0.000000e+00 2366.0
7 TraesCS3D01G074700 chrUn 84.082 735 72 21 2497 3212 39242662 39243370 0.000000e+00 667.0
8 TraesCS3D01G074700 chrUn 90.741 486 28 11 1123 1600 39241254 39241730 2.820000e-177 632.0
9 TraesCS3D01G074700 chrUn 79.401 835 90 45 1678 2493 39241857 39242628 1.070000e-141 514.0
10 TraesCS3D01G074700 chrUn 89.744 78 8 0 5250 5327 39246163 39246240 3.530000e-17 100.0
11 TraesCS3D01G074700 chr6B 83.602 744 80 21 2795 3508 676002608 676003339 0.000000e+00 660.0
12 TraesCS3D01G074700 chr6B 80.805 646 94 11 158 782 154847826 154848462 3.890000e-131 479.0
13 TraesCS3D01G074700 chr6B 87.857 420 28 10 1208 1605 676001546 676001964 6.500000e-129 472.0
14 TraesCS3D01G074700 chr6B 80.962 499 64 16 1678 2167 676002086 676002562 3.160000e-97 366.0
15 TraesCS3D01G074700 chr6B 87.931 174 11 3 1663 1835 519318508 519318672 4.380000e-46 196.0
16 TraesCS3D01G074700 chr6B 90.604 149 4 6 1688 1835 676003336 676003475 7.330000e-44 189.0
17 TraesCS3D01G074700 chr6B 94.000 50 2 1 11 59 711704139 711704188 2.140000e-09 75.0
18 TraesCS3D01G074700 chr1B 81.414 764 103 23 161 899 605664137 605663388 6.190000e-164 588.0
19 TraesCS3D01G074700 chr1B 80.444 450 62 14 1726 2167 337427065 337426634 2.490000e-83 320.0
20 TraesCS3D01G074700 chr1B 96.078 51 2 0 1486 1536 643913018 643913068 3.560000e-12 84.2
21 TraesCS3D01G074700 chr5D 83.307 629 96 5 14 640 369336399 369335778 6.230000e-159 571.0
22 TraesCS3D01G074700 chr5D 80.443 767 116 17 158 900 464702652 464701896 6.280000e-154 555.0
23 TraesCS3D01G074700 chr7B 80.915 765 107 21 158 897 237483264 237484014 8.060000e-158 568.0
24 TraesCS3D01G074700 chr7B 80.052 762 118 18 158 897 560533635 560534384 8.180000e-148 534.0
25 TraesCS3D01G074700 chr7B 80.325 676 121 8 1 672 741446263 741445596 8.290000e-138 501.0
26 TraesCS3D01G074700 chr7B 81.208 596 93 10 158 742 742247119 742246532 3.910000e-126 462.0
27 TraesCS3D01G074700 chr7B 89.140 221 21 3 5323 5542 25632736 25632954 7.080000e-69 272.0
28 TraesCS3D01G074700 chr7B 88.333 120 10 3 2580 2699 100316935 100316820 2.080000e-29 141.0
29 TraesCS3D01G074700 chr7B 95.918 49 2 0 1488 1536 100427916 100427964 4.600000e-11 80.5
30 TraesCS3D01G074700 chr7B 94.872 39 2 0 21 59 426962303 426962265 1.670000e-05 62.1
31 TraesCS3D01G074700 chr6D 80.620 774 106 24 158 902 455635391 455636149 4.850000e-155 558.0
32 TraesCS3D01G074700 chr6D 90.090 222 16 3 5324 5545 47380667 47380452 3.270000e-72 283.0
33 TraesCS3D01G074700 chr6D 89.167 120 9 3 2580 2699 90967251 90967366 4.480000e-31 147.0
34 TraesCS3D01G074700 chr6D 89.167 120 9 3 2580 2699 418332636 418332751 4.480000e-31 147.0
35 TraesCS3D01G074700 chr1A 80.418 766 110 21 158 898 585041258 585040508 1.050000e-151 547.0
36 TraesCS3D01G074700 chr7D 80.348 748 115 16 158 882 59576797 59576059 6.320000e-149 538.0
37 TraesCS3D01G074700 chr7D 91.518 224 17 2 5323 5545 70816578 70816800 1.940000e-79 307.0
38 TraesCS3D01G074700 chr1D 79.278 748 120 15 158 882 25234620 25235355 1.800000e-134 490.0
39 TraesCS3D01G074700 chr5B 78.261 759 132 21 161 897 633936385 633935638 1.820000e-124 457.0
40 TraesCS3D01G074700 chr5B 87.345 403 36 9 1217 1605 704542806 704542405 1.100000e-121 448.0
41 TraesCS3D01G074700 chr5B 83.168 202 31 3 5 203 391159392 391159191 1.230000e-41 182.0
42 TraesCS3D01G074700 chr5B 86.875 160 9 7 1678 1835 704542283 704542134 9.550000e-38 169.0
43 TraesCS3D01G074700 chr4D 80.795 604 97 8 159 751 7037251 7036656 6.550000e-124 455.0
44 TraesCS3D01G074700 chr4D 81.454 399 53 10 500 879 69125026 69125422 1.940000e-79 307.0
45 TraesCS3D01G074700 chr4D 90.179 224 19 3 5323 5545 415025161 415024940 7.030000e-74 289.0
46 TraesCS3D01G074700 chr4D 88.393 224 24 2 5323 5545 80959712 80959934 9.160000e-68 268.0
47 TraesCS3D01G074700 chr4D 93.750 96 6 0 2604 2699 290926659 290926564 1.610000e-30 145.0
48 TraesCS3D01G074700 chr4D 88.333 120 10 3 2580 2699 291789900 291790015 2.080000e-29 141.0
49 TraesCS3D01G074700 chr2D 82.197 528 84 6 158 683 58736838 58736319 3.940000e-121 446.0
50 TraesCS3D01G074700 chr2D 91.031 223 18 2 5324 5545 615992121 615991900 3.250000e-77 300.0
51 TraesCS3D01G074700 chr2D 89.167 120 9 3 2580 2699 570015820 570015705 4.480000e-31 147.0
52 TraesCS3D01G074700 chr3B 89.286 224 22 2 5323 5545 570186129 570185907 4.230000e-71 279.0
53 TraesCS3D01G074700 chr3B 74.348 690 154 16 1 682 593918767 593919441 7.080000e-69 272.0
54 TraesCS3D01G074700 chr3B 82.609 230 26 9 2836 3063 740793703 740793920 2.040000e-44 191.0
55 TraesCS3D01G074700 chr6A 89.238 223 22 2 5324 5545 460633779 460634000 1.520000e-70 278.0
56 TraesCS3D01G074700 chr6A 89.167 120 9 3 2580 2699 608964211 608964326 4.480000e-31 147.0
57 TraesCS3D01G074700 chr5A 89.238 223 23 1 5323 5545 478317207 478316986 1.520000e-70 278.0
58 TraesCS3D01G074700 chr2B 89.080 174 9 4 1663 1835 754043969 754043805 2.020000e-49 207.0
59 TraesCS3D01G074700 chr4B 87.356 174 12 3 1663 1835 515361314 515361478 2.040000e-44 191.0
60 TraesCS3D01G074700 chr4B 81.818 231 26 8 2836 3063 81497676 81497459 4.410000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G074700 chr3D 35892328 35897872 5544 True 10240.00 10240 100.00000 1 5545 1 chr3D.!!$R1 5544
1 TraesCS3D01G074700 chr3D 527669351 527670107 756 True 486.00 486 78.98800 158 899 1 chr3D.!!$R2 741
2 TraesCS3D01G074700 chr3D 600540426 600541259 833 True 457.00 457 77.14000 1 830 1 chr3D.!!$R3 829
3 TraesCS3D01G074700 chr3A 46728618 46732965 4347 True 1921.00 3465 81.59900 944 5315 2 chr3A.!!$R1 4371
4 TraesCS3D01G074700 chrUn 39241254 39246240 4986 False 855.80 2366 86.42980 1123 5327 5 chrUn.!!$F1 4204
5 TraesCS3D01G074700 chr6B 154847826 154848462 636 False 479.00 479 80.80500 158 782 1 chr6B.!!$F1 624
6 TraesCS3D01G074700 chr6B 676001546 676003475 1929 False 421.75 660 85.75625 1208 3508 4 chr6B.!!$F4 2300
7 TraesCS3D01G074700 chr1B 605663388 605664137 749 True 588.00 588 81.41400 161 899 1 chr1B.!!$R2 738
8 TraesCS3D01G074700 chr5D 369335778 369336399 621 True 571.00 571 83.30700 14 640 1 chr5D.!!$R1 626
9 TraesCS3D01G074700 chr5D 464701896 464702652 756 True 555.00 555 80.44300 158 900 1 chr5D.!!$R2 742
10 TraesCS3D01G074700 chr7B 237483264 237484014 750 False 568.00 568 80.91500 158 897 1 chr7B.!!$F3 739
11 TraesCS3D01G074700 chr7B 560533635 560534384 749 False 534.00 534 80.05200 158 897 1 chr7B.!!$F4 739
12 TraesCS3D01G074700 chr7B 741445596 741446263 667 True 501.00 501 80.32500 1 672 1 chr7B.!!$R3 671
13 TraesCS3D01G074700 chr7B 742246532 742247119 587 True 462.00 462 81.20800 158 742 1 chr7B.!!$R4 584
14 TraesCS3D01G074700 chr6D 455635391 455636149 758 False 558.00 558 80.62000 158 902 1 chr6D.!!$F3 744
15 TraesCS3D01G074700 chr1A 585040508 585041258 750 True 547.00 547 80.41800 158 898 1 chr1A.!!$R1 740
16 TraesCS3D01G074700 chr7D 59576059 59576797 738 True 538.00 538 80.34800 158 882 1 chr7D.!!$R1 724
17 TraesCS3D01G074700 chr1D 25234620 25235355 735 False 490.00 490 79.27800 158 882 1 chr1D.!!$F1 724
18 TraesCS3D01G074700 chr5B 633935638 633936385 747 True 457.00 457 78.26100 161 897 1 chr5B.!!$R2 736
19 TraesCS3D01G074700 chr5B 704542134 704542806 672 True 308.50 448 87.11000 1217 1835 2 chr5B.!!$R3 618
20 TraesCS3D01G074700 chr4D 7036656 7037251 595 True 455.00 455 80.79500 159 751 1 chr4D.!!$R1 592
21 TraesCS3D01G074700 chr2D 58736319 58736838 519 True 446.00 446 82.19700 158 683 1 chr2D.!!$R1 525
22 TraesCS3D01G074700 chr3B 593918767 593919441 674 False 272.00 272 74.34800 1 682 1 chr3B.!!$F1 681

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
102 104 0.243095 AGACGACAGAACGCTAACCC 59.757 55.0 0.00 0.0 36.70 4.11 F
496 503 0.441145 GTCGACGCATACAACAACCC 59.559 55.0 0.00 0.0 0.00 4.11 F
1047 1087 0.809241 CAAGACGCTGCATCCTCCTC 60.809 60.0 0.00 0.0 0.00 3.71 F
1640 1783 0.168128 ACGCTGCTTCGGTTAATTGC 59.832 50.0 0.00 0.0 0.00 3.56 F
1866 2017 0.179081 GGAGTTAGCCGTCCACATCC 60.179 60.0 0.00 0.0 32.55 3.51 F
1868 2019 0.249398 AGTTAGCCGTCCACATCCAC 59.751 55.0 0.00 0.0 0.00 4.02 F
1890 2041 0.249911 ACTCACAAGCTTCGTGGGAC 60.250 55.0 25.83 0.0 36.98 4.46 F
2775 2992 0.393402 GCAGATCTGGTGCCATGTGA 60.393 55.0 23.89 0.0 34.67 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1609 1746 0.108138 AGCAGCGTATCCAGTGAACC 60.108 55.000 0.0 0.00 0.00 3.62 R
1622 1759 0.167908 TGCAATTAACCGAAGCAGCG 59.832 50.000 0.0 0.00 0.00 5.18 R
2571 2787 0.169672 CTTGATCACCAAAGCAGCGG 59.830 55.000 0.0 0.00 33.76 5.52 R
2658 2874 0.904865 TGGTAGCTCTGTGGGTCTGG 60.905 60.000 0.0 0.00 0.00 3.86 R
3462 4065 1.017387 CGATAGGCTGGCCTTTTGAC 58.983 55.000 19.7 6.35 45.70 3.18 R
4003 4606 3.066481 GGTAGATCTCGGTGGTGTAGTTC 59.934 52.174 0.0 0.00 0.00 3.01 R
4057 4660 4.078516 AAGACGTAGCCCGCCACC 62.079 66.667 0.0 0.00 41.42 4.61 R
4780 5432 0.035881 CAGAGAAAGCAGAGTGGCCA 59.964 55.000 0.0 0.00 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 63 7.269477 AGATTATAGTACAAGTCACGTACCC 57.731 40.000 0.00 0.00 40.10 3.69
75 77 0.611714 GTACCCACCGACCTGACAAT 59.388 55.000 0.00 0.00 0.00 2.71
79 81 2.104967 CCCACCGACCTGACAATACTA 58.895 52.381 0.00 0.00 0.00 1.82
87 89 5.061808 CCGACCTGACAATACTAAAAAGACG 59.938 44.000 0.00 0.00 0.00 4.18
102 104 0.243095 AGACGACAGAACGCTAACCC 59.757 55.000 0.00 0.00 36.70 4.11
130 132 4.342092 ACAAAGGAACATCAACCAAGAAGG 59.658 41.667 0.00 0.00 45.67 3.46
135 137 5.660864 AGGAACATCAACCAAGAAGGAAAAA 59.339 36.000 0.00 0.00 41.22 1.94
144 146 8.359642 TCAACCAAGAAGGAAAAATACAATCAG 58.640 33.333 0.00 0.00 41.22 2.90
218 221 0.698238 ACCATAGCAGCCACCAAAGA 59.302 50.000 0.00 0.00 0.00 2.52
219 222 1.340405 ACCATAGCAGCCACCAAAGAG 60.340 52.381 0.00 0.00 0.00 2.85
220 223 1.065199 CCATAGCAGCCACCAAAGAGA 60.065 52.381 0.00 0.00 0.00 3.10
221 224 2.618816 CCATAGCAGCCACCAAAGAGAA 60.619 50.000 0.00 0.00 0.00 2.87
262 265 4.103103 CACCTGAGCTCGACGCGA 62.103 66.667 15.93 2.20 45.59 5.87
295 298 1.453235 TGCAGCTTTGCAGACCTCT 59.547 52.632 0.00 0.00 40.23 3.69
336 339 5.313623 GTGAAATCATTACCGTTGAACGAG 58.686 41.667 20.47 11.68 46.05 4.18
363 366 4.681978 GGCAACACCTCGGACGCT 62.682 66.667 0.00 0.00 34.51 5.07
439 442 5.708736 ACCATACCTGTCATCCACAAATA 57.291 39.130 0.00 0.00 33.31 1.40
454 458 4.050553 CACAAATAACAAACCCAGCACAG 58.949 43.478 0.00 0.00 0.00 3.66
469 476 1.213926 GCACAGAATCCCCCATCTTCT 59.786 52.381 0.00 0.00 0.00 2.85
482 489 2.656085 CATCTTCTAGATGGCGTCGAC 58.344 52.381 5.18 5.18 46.34 4.20
494 501 3.538346 CGTCGACGCATACAACAAC 57.462 52.632 26.59 0.00 0.00 3.32
496 503 0.441145 GTCGACGCATACAACAACCC 59.559 55.000 0.00 0.00 0.00 4.11
547 554 1.878522 CGTCGGCGCTAGAGCAAAT 60.879 57.895 20.45 0.00 42.21 2.32
559 567 4.456358 GCAAATGCGTCGCAATGA 57.544 50.000 29.53 8.76 43.62 2.57
597 611 4.082523 CCACCACGAGGATGCCGT 62.083 66.667 5.68 0.00 41.36 5.68
598 612 2.047274 CACCACGAGGATGCCGTT 60.047 61.111 5.68 0.00 38.29 4.44
659 674 5.472301 AATTCATTCCCAACCATAGGACT 57.528 39.130 0.00 0.00 0.00 3.85
697 721 4.260948 GGAAGAATCTTTATTCAGCGCTGG 60.261 45.833 35.36 19.16 43.44 4.85
743 770 5.782893 TGATGAACAACCTAAAAACCTGG 57.217 39.130 0.00 0.00 0.00 4.45
745 772 2.696187 TGAACAACCTAAAAACCTGGCC 59.304 45.455 0.00 0.00 0.00 5.36
764 800 1.201877 CCTAAAAACGATCCACACGCG 60.202 52.381 3.53 3.53 0.00 6.01
794 832 4.567597 ACCCCCTCACCACCGACA 62.568 66.667 0.00 0.00 0.00 4.35
813 851 4.367023 CCGAGGTCGTTGGCGGAA 62.367 66.667 0.00 0.00 46.29 4.30
820 858 4.394712 CGTTGGCGGAAGGGAGCT 62.395 66.667 0.00 0.00 0.00 4.09
841 879 4.821589 GGAGGACCGCGCTGGAAG 62.822 72.222 22.10 0.00 42.00 3.46
874 914 3.861797 CGGCGGCTAGGGTTCCAT 61.862 66.667 7.61 0.00 0.00 3.41
879 919 2.742116 GGCTAGGGTTCCATCCGCA 61.742 63.158 0.00 0.00 0.00 5.69
880 920 1.227674 GCTAGGGTTCCATCCGCAG 60.228 63.158 0.00 0.00 0.00 5.18
919 959 5.529581 AAAAGTGGGTATGTTTGGAGTTG 57.470 39.130 0.00 0.00 0.00 3.16
920 960 3.876309 AGTGGGTATGTTTGGAGTTGT 57.124 42.857 0.00 0.00 0.00 3.32
921 961 4.986054 AGTGGGTATGTTTGGAGTTGTA 57.014 40.909 0.00 0.00 0.00 2.41
922 962 4.906618 AGTGGGTATGTTTGGAGTTGTAG 58.093 43.478 0.00 0.00 0.00 2.74
923 963 4.007659 GTGGGTATGTTTGGAGTTGTAGG 58.992 47.826 0.00 0.00 0.00 3.18
924 964 3.653836 TGGGTATGTTTGGAGTTGTAGGT 59.346 43.478 0.00 0.00 0.00 3.08
925 965 4.105057 TGGGTATGTTTGGAGTTGTAGGTT 59.895 41.667 0.00 0.00 0.00 3.50
926 966 4.698780 GGGTATGTTTGGAGTTGTAGGTTC 59.301 45.833 0.00 0.00 0.00 3.62
927 967 5.514310 GGGTATGTTTGGAGTTGTAGGTTCT 60.514 44.000 0.00 0.00 0.00 3.01
928 968 6.002082 GGTATGTTTGGAGTTGTAGGTTCTT 58.998 40.000 0.00 0.00 0.00 2.52
929 969 6.489022 GGTATGTTTGGAGTTGTAGGTTCTTT 59.511 38.462 0.00 0.00 0.00 2.52
930 970 7.013942 GGTATGTTTGGAGTTGTAGGTTCTTTT 59.986 37.037 0.00 0.00 0.00 2.27
931 971 6.844097 TGTTTGGAGTTGTAGGTTCTTTTT 57.156 33.333 0.00 0.00 0.00 1.94
989 1029 1.443872 CGACTCGGCTGGTACACAC 60.444 63.158 0.00 0.00 0.00 3.82
990 1030 1.663739 GACTCGGCTGGTACACACA 59.336 57.895 0.00 0.00 0.00 3.72
1043 1083 4.606071 GTCAAGACGCTGCATCCT 57.394 55.556 0.00 0.00 0.00 3.24
1044 1084 2.378028 GTCAAGACGCTGCATCCTC 58.622 57.895 0.00 0.00 0.00 3.71
1045 1085 1.086634 GTCAAGACGCTGCATCCTCC 61.087 60.000 0.00 0.00 0.00 4.30
1046 1086 1.220206 CAAGACGCTGCATCCTCCT 59.780 57.895 0.00 0.00 0.00 3.69
1047 1087 0.809241 CAAGACGCTGCATCCTCCTC 60.809 60.000 0.00 0.00 0.00 3.71
1048 1088 1.965754 AAGACGCTGCATCCTCCTCC 61.966 60.000 0.00 0.00 0.00 4.30
1049 1089 2.364842 ACGCTGCATCCTCCTCCT 60.365 61.111 0.00 0.00 0.00 3.69
1050 1090 2.362329 GACGCTGCATCCTCCTCCTC 62.362 65.000 0.00 0.00 0.00 3.71
1051 1091 2.828145 GCTGCATCCTCCTCCTCC 59.172 66.667 0.00 0.00 0.00 4.30
1058 1098 1.725169 ATCCTCCTCCTCCTCCTCCG 61.725 65.000 0.00 0.00 0.00 4.63
1169 1228 3.013932 CCTGCCTGCCCCTTCTCT 61.014 66.667 0.00 0.00 0.00 3.10
1187 1246 1.842381 CTCCCACCCAGTGTCTTCCC 61.842 65.000 0.00 0.00 0.00 3.97
1195 1254 1.081277 AGTGTCTTCCCCCTCTCCC 59.919 63.158 0.00 0.00 0.00 4.30
1212 1271 3.174987 CCCTCCACACCACCACCA 61.175 66.667 0.00 0.00 0.00 4.17
1226 1285 1.891919 CACCACCACCACAGGTTCG 60.892 63.158 0.00 0.00 40.77 3.95
1230 1297 2.347490 CCACCACAGGTTCGAGGG 59.653 66.667 0.00 0.00 31.02 4.30
1257 1327 1.748122 CTCGCCTTGCTGCCTGAAT 60.748 57.895 0.00 0.00 0.00 2.57
1376 1461 4.436998 CTCTTCCTTCCGCGCCGT 62.437 66.667 0.00 0.00 0.00 5.68
1548 1644 7.262048 CCAAGAGTAAGTCTAATCACCTCTTC 58.738 42.308 0.00 0.00 32.65 2.87
1609 1746 7.170828 TGAGTTCAAATCCGAAATATACGATGG 59.829 37.037 0.00 0.00 0.00 3.51
1619 1756 5.607477 GAAATATACGATGGGTTCACTGGA 58.393 41.667 0.00 0.00 0.00 3.86
1620 1757 5.825593 AATATACGATGGGTTCACTGGAT 57.174 39.130 0.00 0.00 0.00 3.41
1622 1759 2.981859 ACGATGGGTTCACTGGATAC 57.018 50.000 0.00 0.00 0.00 2.24
1630 1767 1.661112 GTTCACTGGATACGCTGCTTC 59.339 52.381 0.00 0.00 42.51 3.86
1638 1781 2.870411 GGATACGCTGCTTCGGTTAATT 59.130 45.455 0.00 0.00 0.00 1.40
1640 1783 0.168128 ACGCTGCTTCGGTTAATTGC 59.832 50.000 0.00 0.00 0.00 3.56
1646 1789 2.253603 GCTTCGGTTAATTGCAGCAAG 58.746 47.619 14.47 0.00 0.00 4.01
1647 1790 2.253603 CTTCGGTTAATTGCAGCAAGC 58.746 47.619 14.47 0.00 45.96 4.01
1657 1800 3.341043 CAGCAAGCGCGTCAGTGT 61.341 61.111 8.43 0.00 45.49 3.55
1658 1801 3.341043 AGCAAGCGCGTCAGTGTG 61.341 61.111 8.43 0.00 45.49 3.82
1671 1820 1.595382 AGTGTGCACGAGCTGAACC 60.595 57.895 13.13 0.00 42.74 3.62
1693 1842 4.695455 CCTTAGTACTGTGTTTGGGTCATG 59.305 45.833 5.39 0.00 0.00 3.07
1700 1849 4.141482 ACTGTGTTTGGGTCATGTCTAGTT 60.141 41.667 0.00 0.00 0.00 2.24
1704 1853 6.183361 TGTGTTTGGGTCATGTCTAGTTCTTA 60.183 38.462 0.00 0.00 0.00 2.10
1705 1854 6.147328 GTGTTTGGGTCATGTCTAGTTCTTAC 59.853 42.308 0.00 0.00 0.00 2.34
1708 1857 4.081642 TGGGTCATGTCTAGTTCTTACTGC 60.082 45.833 0.00 0.00 35.78 4.40
1709 1858 4.160626 GGGTCATGTCTAGTTCTTACTGCT 59.839 45.833 0.00 0.00 35.78 4.24
1710 1859 5.337652 GGGTCATGTCTAGTTCTTACTGCTT 60.338 44.000 0.00 0.00 35.78 3.91
1711 1860 6.127423 GGGTCATGTCTAGTTCTTACTGCTTA 60.127 42.308 0.00 0.00 35.78 3.09
1712 1861 7.321153 GGTCATGTCTAGTTCTTACTGCTTAA 58.679 38.462 0.00 0.00 35.78 1.85
1713 1862 7.275999 GGTCATGTCTAGTTCTTACTGCTTAAC 59.724 40.741 0.00 0.00 35.78 2.01
1766 1915 1.960689 GTGTTTTGCCCTCCTTGCTTA 59.039 47.619 0.00 0.00 0.00 3.09
1805 1956 2.908351 GGTACTGGTAGGGTCCTTTTGA 59.092 50.000 0.00 0.00 0.00 2.69
1808 1959 3.256704 ACTGGTAGGGTCCTTTTGATCA 58.743 45.455 0.00 0.00 0.00 2.92
1809 1960 3.009143 ACTGGTAGGGTCCTTTTGATCAC 59.991 47.826 0.00 0.00 0.00 3.06
1810 1961 3.256704 TGGTAGGGTCCTTTTGATCACT 58.743 45.455 0.00 0.00 0.00 3.41
1811 1962 4.431378 TGGTAGGGTCCTTTTGATCACTA 58.569 43.478 0.00 0.00 0.00 2.74
1812 1963 4.224370 TGGTAGGGTCCTTTTGATCACTAC 59.776 45.833 0.00 1.06 31.92 2.73
1813 1964 4.224370 GGTAGGGTCCTTTTGATCACTACA 59.776 45.833 14.28 0.00 33.21 2.74
1842 1993 5.187967 AGGTTGTTAGGATCTTGTCTAGGTG 59.812 44.000 0.00 0.00 0.00 4.00
1866 2017 0.179081 GGAGTTAGCCGTCCACATCC 60.179 60.000 0.00 0.00 32.55 3.51
1868 2019 0.249398 AGTTAGCCGTCCACATCCAC 59.751 55.000 0.00 0.00 0.00 4.02
1887 2038 1.571460 GCACTCACAAGCTTCGTGG 59.429 57.895 21.19 16.18 35.03 4.94
1890 2041 0.249911 ACTCACAAGCTTCGTGGGAC 60.250 55.000 25.83 0.00 36.98 4.46
1928 2079 9.615295 TTCTTAAATACAAAATTACACTTCCGC 57.385 29.630 0.00 0.00 0.00 5.54
1948 2099 7.015226 TCCGCATGAGTATTTCAGTTAATTG 57.985 36.000 0.00 0.00 39.68 2.32
1950 2101 5.393452 CGCATGAGTATTTCAGTTAATTGCG 59.607 40.000 0.00 0.00 45.48 4.85
1958 2112 5.446143 TTTCAGTTAATTGCGGTCACATT 57.554 34.783 0.00 0.00 0.00 2.71
1959 2113 6.561737 TTTCAGTTAATTGCGGTCACATTA 57.438 33.333 0.00 0.00 0.00 1.90
1983 2138 6.683974 TTTGTGTTTCTTGAGAAGGAGAAG 57.316 37.500 0.00 0.00 35.21 2.85
1989 2144 9.145865 GTGTTTCTTGAGAAGGAGAAGTTATAG 57.854 37.037 0.00 0.00 35.21 1.31
2023 2178 2.029838 ATTCAGATCACGGACTTGGC 57.970 50.000 0.00 0.00 0.00 4.52
2041 2196 1.672145 GGCTAGGTGTCGTTTGGAGAC 60.672 57.143 0.00 0.00 38.18 3.36
2107 2262 3.795688 AGAACAATCATGACACAGGGT 57.204 42.857 0.00 0.00 0.00 4.34
2119 2274 3.350219 ACACAGGGTGTTATGTGGATC 57.650 47.619 9.83 0.00 45.08 3.36
2120 2275 2.026262 ACACAGGGTGTTATGTGGATCC 60.026 50.000 4.20 4.20 45.08 3.36
2122 2277 1.846439 CAGGGTGTTATGTGGATCCCT 59.154 52.381 9.90 0.00 45.05 4.20
2125 2285 3.023832 GGGTGTTATGTGGATCCCTTTG 58.976 50.000 9.90 0.00 32.89 2.77
2131 2291 7.386059 GTGTTATGTGGATCCCTTTGAAAAAT 58.614 34.615 9.90 0.00 0.00 1.82
2136 2296 8.846943 ATGTGGATCCCTTTGAAAAATAAAAC 57.153 30.769 9.90 0.00 0.00 2.43
2169 2329 5.402270 GCGGCAAGCTAATAATGTTTATTGG 59.598 40.000 0.00 1.91 44.04 3.16
2172 2332 7.589954 CGGCAAGCTAATAATGTTTATTGGTAC 59.410 37.037 0.00 0.00 0.00 3.34
2173 2333 8.630037 GGCAAGCTAATAATGTTTATTGGTACT 58.370 33.333 0.00 0.00 0.00 2.73
2174 2334 9.665264 GCAAGCTAATAATGTTTATTGGTACTC 57.335 33.333 0.00 0.00 0.00 2.59
2186 2346 7.656137 TGTTTATTGGTACTCTGTTCTCTGTTC 59.344 37.037 0.00 0.00 0.00 3.18
2187 2347 7.540474 TTATTGGTACTCTGTTCTCTGTTCT 57.460 36.000 0.00 0.00 0.00 3.01
2214 2374 8.870075 AGCTACTTAATCTGAAATTTCAACCT 57.130 30.769 20.82 10.64 36.64 3.50
2216 2376 9.914131 GCTACTTAATCTGAAATTTCAACCTTT 57.086 29.630 20.82 13.65 36.64 3.11
2287 2447 4.629634 TCAGTACATGTTTATGTCGCAAGG 59.370 41.667 2.30 0.00 44.00 3.61
2291 2451 4.328536 ACATGTTTATGTCGCAAGGGTTA 58.671 39.130 0.00 0.00 44.00 2.85
2299 2459 2.236146 TGTCGCAAGGGTTAGTCATGAT 59.764 45.455 0.00 0.00 38.47 2.45
2310 2470 6.151817 AGGGTTAGTCATGATTTTCTTGCTTC 59.848 38.462 0.00 0.00 0.00 3.86
2325 2485 2.733956 TGCTTCTTGTTGGGTGAAACT 58.266 42.857 0.00 0.00 36.74 2.66
2333 2493 2.955660 TGTTGGGTGAAACTGGATGTTC 59.044 45.455 0.00 0.00 38.03 3.18
2393 2555 2.666317 CCCCTTTTCTGTTGGTCAAGT 58.334 47.619 0.00 0.00 0.00 3.16
2411 2573 4.511454 TCAAGTTTGTTTGAGATGGTCTCG 59.489 41.667 2.84 0.00 46.25 4.04
2417 2579 3.996363 TGTTTGAGATGGTCTCGTGATTG 59.004 43.478 2.84 0.00 46.25 2.67
2421 2583 5.400066 TGAGATGGTCTCGTGATTGTTTA 57.600 39.130 2.84 0.00 46.25 2.01
2423 2585 6.042777 TGAGATGGTCTCGTGATTGTTTATC 58.957 40.000 2.84 0.00 46.25 1.75
2424 2586 5.977635 AGATGGTCTCGTGATTGTTTATCA 58.022 37.500 0.00 0.00 40.96 2.15
2426 2588 7.726216 AGATGGTCTCGTGATTGTTTATCATA 58.274 34.615 0.00 0.00 44.75 2.15
2455 2619 5.283457 AGCCTGATGGAGAAAGTATGTAC 57.717 43.478 0.00 0.00 34.57 2.90
2456 2620 4.965532 AGCCTGATGGAGAAAGTATGTACT 59.034 41.667 0.00 0.00 34.79 2.73
2457 2621 6.136857 AGCCTGATGGAGAAAGTATGTACTA 58.863 40.000 0.00 0.00 33.55 1.82
2493 2657 6.073327 AGCAACTTAGTTTTCTTTAGGTGC 57.927 37.500 0.00 0.00 45.70 5.01
2516 2715 5.576128 CCCCCTTTTTATGTGTTCTTCCTA 58.424 41.667 0.00 0.00 0.00 2.94
2557 2773 4.979197 GCTATGAATTAGTGGAGACTGTCG 59.021 45.833 1.52 0.00 33.21 4.35
2558 2774 3.232213 TGAATTAGTGGAGACTGTCGC 57.768 47.619 2.68 2.68 33.21 5.19
2571 2787 3.058639 AGACTGTCGCTGAGCAAAATTTC 60.059 43.478 4.88 0.00 0.00 2.17
2595 2811 3.442977 GCTGCTTTGGTGATCAAGAATCT 59.557 43.478 0.00 0.00 36.62 2.40
2674 2890 2.024176 TTTCCAGACCCACAGAGCTA 57.976 50.000 0.00 0.00 0.00 3.32
2718 2934 6.115446 TGCCATCCTGTAATCTTAAAGTGAG 58.885 40.000 0.00 0.00 0.00 3.51
2722 2938 6.374417 TCCTGTAATCTTAAAGTGAGGCTT 57.626 37.500 0.00 0.00 39.52 4.35
2743 2959 6.456988 GGCTTACACACAGTTATTACTCATGC 60.457 42.308 0.00 0.00 30.26 4.06
2749 2966 4.572389 CACAGTTATTACTCATGCTGGACC 59.428 45.833 0.00 0.00 30.26 4.46
2775 2992 0.393402 GCAGATCTGGTGCCATGTGA 60.393 55.000 23.89 0.00 34.67 3.58
2936 3154 9.994432 CAATTCTCCTGAAACATAGTGATAAAC 57.006 33.333 0.00 0.00 35.63 2.01
2937 3155 8.738645 ATTCTCCTGAAACATAGTGATAAACC 57.261 34.615 0.00 0.00 35.63 3.27
2940 3158 6.884832 TCCTGAAACATAGTGATAAACCGAT 58.115 36.000 0.00 0.00 0.00 4.18
2952 3170 2.320745 AAACCGATAATCCACGTCCC 57.679 50.000 0.00 0.00 0.00 4.46
2971 3190 3.631686 TCCCGATCTTGGCAAATATGTTG 59.368 43.478 0.00 0.00 0.00 3.33
3021 3240 3.219281 TCTGCACCCTTTCCACTTTTAC 58.781 45.455 0.00 0.00 0.00 2.01
3025 3244 4.141344 TGCACCCTTTCCACTTTTACTAGT 60.141 41.667 0.00 0.00 0.00 2.57
3028 3247 6.734871 GCACCCTTTCCACTTTTACTAGTTTG 60.735 42.308 0.00 0.00 0.00 2.93
3057 3276 4.393834 TGTTTGTTGCCATAAGTAGCTCA 58.606 39.130 0.00 0.00 0.00 4.26
3058 3277 5.009631 TGTTTGTTGCCATAAGTAGCTCAT 58.990 37.500 0.00 0.00 0.00 2.90
3059 3278 5.106197 TGTTTGTTGCCATAAGTAGCTCATG 60.106 40.000 0.00 0.00 0.00 3.07
3060 3279 4.220693 TGTTGCCATAAGTAGCTCATGT 57.779 40.909 0.00 0.00 0.00 3.21
3067 3287 5.109210 CCATAAGTAGCTCATGTTTCGACA 58.891 41.667 0.00 0.00 0.00 4.35
3079 3299 4.209452 TGTTTCGACATTGTCTTCAAGC 57.791 40.909 14.54 7.35 36.97 4.01
3184 3410 2.754552 TGTTGCTGTTCTGCTTTTGAGT 59.245 40.909 3.65 0.00 0.00 3.41
3197 3423 3.671702 GCTTTTGAGTCTGCACCATAAGC 60.672 47.826 0.00 0.00 37.57 3.09
3205 3431 3.003068 GTCTGCACCATAAGCTGCTAATG 59.997 47.826 0.90 0.00 34.29 1.90
3215 3441 6.457934 CCATAAGCTGCTAATGTTGAGAACAG 60.458 42.308 0.90 0.00 45.95 3.16
3249 3833 6.011122 AGATCTTCCCTATGCATGAAACTT 57.989 37.500 10.16 0.00 0.00 2.66
3250 3834 5.826737 AGATCTTCCCTATGCATGAAACTTG 59.173 40.000 10.16 0.00 0.00 3.16
3251 3835 4.922206 TCTTCCCTATGCATGAAACTTGT 58.078 39.130 10.16 0.00 0.00 3.16
3259 3843 3.968649 TGCATGAAACTTGTTTCTCTGC 58.031 40.909 27.28 27.28 39.00 4.26
3261 3845 4.821260 TGCATGAAACTTGTTTCTCTGCTA 59.179 37.500 30.07 22.08 39.14 3.49
3262 3846 5.474532 TGCATGAAACTTGTTTCTCTGCTAT 59.525 36.000 30.07 15.80 39.14 2.97
3263 3847 6.016024 TGCATGAAACTTGTTTCTCTGCTATT 60.016 34.615 30.07 10.06 39.14 1.73
3264 3848 6.307318 GCATGAAACTTGTTTCTCTGCTATTG 59.693 38.462 27.02 15.07 37.34 1.90
3268 3852 6.942532 AACTTGTTTCTCTGCTATTGTTCA 57.057 33.333 0.00 0.00 0.00 3.18
3270 3854 6.291377 ACTTGTTTCTCTGCTATTGTTCAGA 58.709 36.000 0.00 0.00 37.70 3.27
3271 3855 6.767902 ACTTGTTTCTCTGCTATTGTTCAGAA 59.232 34.615 0.00 0.00 38.68 3.02
3272 3856 6.545504 TGTTTCTCTGCTATTGTTCAGAAC 57.454 37.500 6.32 6.32 38.68 3.01
3288 3876 6.318648 TGTTCAGAACAATATGAATGGGCTAC 59.681 38.462 13.90 0.00 38.87 3.58
3290 3878 5.822519 TCAGAACAATATGAATGGGCTACAC 59.177 40.000 0.00 0.00 0.00 2.90
3297 3885 2.989909 TGAATGGGCTACACTGACATG 58.010 47.619 0.00 0.00 0.00 3.21
3352 3955 6.484364 TCTATGAAGAGCAATGGTGTATGA 57.516 37.500 0.00 0.00 0.00 2.15
3462 4065 1.202806 TGGAAAGCCAGTTGTCCTCAG 60.203 52.381 0.00 0.00 39.92 3.35
4003 4606 2.068716 CAACATTGTGACGTGCGCG 61.069 57.895 19.78 19.78 44.93 6.86
4078 4681 2.577593 GCGGGCTACGTCTTCCTT 59.422 61.111 0.00 0.00 46.52 3.36
4111 4714 1.972872 CTATCATGACCAACTGGGCC 58.027 55.000 0.00 0.00 44.80 5.80
4114 4717 1.077265 CATGACCAACTGGGCCCTT 59.923 57.895 25.70 6.95 44.80 3.95
4158 4764 3.243724 AGGCAAGTGTACCTCTTCTCTT 58.756 45.455 0.00 0.00 0.00 2.85
4162 4768 4.230657 CAAGTGTACCTCTTCTCTTCACG 58.769 47.826 0.00 0.00 0.00 4.35
4198 4811 4.081752 ACAAAACCTGTGAAAACTGCATGA 60.082 37.500 0.00 0.00 36.69 3.07
4212 4825 7.878477 AAACTGCATGAATTTACTGACATTG 57.122 32.000 0.00 0.00 0.00 2.82
4213 4826 5.404946 ACTGCATGAATTTACTGACATTGC 58.595 37.500 0.00 0.00 0.00 3.56
4214 4827 4.413969 TGCATGAATTTACTGACATTGCG 58.586 39.130 0.00 0.00 0.00 4.85
4281 4899 0.107214 GCCGATGGGTGATTCTTCCA 60.107 55.000 0.00 2.04 34.97 3.53
4308 4926 0.531974 TGTGAAGAAGACACGGTGCC 60.532 55.000 8.30 0.00 40.61 5.01
4309 4927 0.249911 GTGAAGAAGACACGGTGCCT 60.250 55.000 8.30 0.00 0.00 4.75
4314 4932 2.117941 GAAGACACGGTGCCTGCAAC 62.118 60.000 8.30 0.00 0.00 4.17
4340 4958 5.340803 CAGCATCTGGAGATTCAACATTTG 58.659 41.667 0.00 0.00 31.21 2.32
4378 4996 4.379499 CCGAAAGTTAAAAGCCATCAGTCC 60.379 45.833 0.00 0.00 0.00 3.85
4387 5005 1.278985 AGCCATCAGTCCGATTTCACA 59.721 47.619 0.00 0.00 29.21 3.58
4396 5014 5.067153 TCAGTCCGATTTCACACAAACATTT 59.933 36.000 0.00 0.00 0.00 2.32
4451 5069 6.699575 ACCTCAATTATGTAGTCCAAATGC 57.300 37.500 0.00 0.00 0.00 3.56
4524 5149 0.639756 GTTTATTTACGCCGCGACGA 59.360 50.000 24.48 0.00 36.70 4.20
4547 5172 0.249911 GTCGCTGTCAAGTCCAACCT 60.250 55.000 0.00 0.00 0.00 3.50
4590 5217 1.377202 GCCCGTGCTCCATTCTTCA 60.377 57.895 0.00 0.00 33.53 3.02
4598 5248 3.101437 TGCTCCATTCTTCATGCCATTT 58.899 40.909 0.00 0.00 0.00 2.32
4679 5331 1.269413 GCTTGCTTGACATTGCTGTGT 60.269 47.619 3.24 0.00 35.14 3.72
4683 5335 1.601162 GCTTGACATTGCTGTGTGTGG 60.601 52.381 0.00 0.00 35.14 4.17
4686 5338 0.235665 GACATTGCTGTGTGTGGTCG 59.764 55.000 0.00 0.00 35.14 4.79
4687 5339 1.165907 ACATTGCTGTGTGTGGTCGG 61.166 55.000 0.00 0.00 33.22 4.79
4688 5340 1.148273 ATTGCTGTGTGTGGTCGGT 59.852 52.632 0.00 0.00 0.00 4.69
4690 5342 3.036084 GCTGTGTGTGGTCGGTCG 61.036 66.667 0.00 0.00 0.00 4.79
4691 5343 2.415843 CTGTGTGTGGTCGGTCGT 59.584 61.111 0.00 0.00 0.00 4.34
4692 5344 1.660575 CTGTGTGTGGTCGGTCGTC 60.661 63.158 0.00 0.00 0.00 4.20
4693 5345 2.071844 CTGTGTGTGGTCGGTCGTCT 62.072 60.000 0.00 0.00 0.00 4.18
4695 5347 0.386478 GTGTGTGGTCGGTCGTCTAC 60.386 60.000 0.00 0.00 0.00 2.59
4696 5348 0.818852 TGTGTGGTCGGTCGTCTACA 60.819 55.000 3.28 3.28 0.00 2.74
4697 5349 0.311790 GTGTGGTCGGTCGTCTACAA 59.688 55.000 8.07 0.00 0.00 2.41
4698 5350 1.031235 TGTGGTCGGTCGTCTACAAA 58.969 50.000 4.68 0.00 0.00 2.83
4699 5351 1.001048 TGTGGTCGGTCGTCTACAAAG 60.001 52.381 4.68 0.00 0.00 2.77
4701 5353 1.267806 TGGTCGGTCGTCTACAAAGTC 59.732 52.381 0.00 0.00 0.00 3.01
4702 5354 1.267806 GGTCGGTCGTCTACAAAGTCA 59.732 52.381 0.00 0.00 0.00 3.41
4703 5355 2.094854 GGTCGGTCGTCTACAAAGTCAT 60.095 50.000 0.00 0.00 0.00 3.06
4704 5356 3.572584 GTCGGTCGTCTACAAAGTCATT 58.427 45.455 0.00 0.00 0.00 2.57
4705 5357 4.379813 GGTCGGTCGTCTACAAAGTCATTA 60.380 45.833 0.00 0.00 0.00 1.90
4706 5358 4.792189 GTCGGTCGTCTACAAAGTCATTAG 59.208 45.833 0.00 0.00 0.00 1.73
4707 5359 4.696877 TCGGTCGTCTACAAAGTCATTAGA 59.303 41.667 0.00 0.00 0.00 2.10
4708 5360 5.181811 TCGGTCGTCTACAAAGTCATTAGAA 59.818 40.000 0.00 0.00 0.00 2.10
4714 5366 8.740906 TCGTCTACAAAGTCATTAGAAGAAGAT 58.259 33.333 0.00 0.00 30.49 2.40
4728 5380 5.189180 AGAAGAAGATGTCAATTAGGGCAC 58.811 41.667 0.00 0.00 0.00 5.01
4729 5381 3.535561 AGAAGATGTCAATTAGGGCACG 58.464 45.455 0.00 0.00 0.00 5.34
4730 5382 1.668419 AGATGTCAATTAGGGCACGC 58.332 50.000 0.00 0.00 0.00 5.34
4731 5383 1.065491 AGATGTCAATTAGGGCACGCA 60.065 47.619 0.00 0.00 0.00 5.24
4732 5384 1.064060 GATGTCAATTAGGGCACGCAC 59.936 52.381 0.00 0.00 0.00 5.34
4733 5385 0.250510 TGTCAATTAGGGCACGCACA 60.251 50.000 0.00 0.00 0.00 4.57
4734 5386 1.094785 GTCAATTAGGGCACGCACAT 58.905 50.000 0.00 0.00 0.00 3.21
4735 5387 1.472480 GTCAATTAGGGCACGCACATT 59.528 47.619 0.00 0.00 0.00 2.71
4737 5389 2.680841 TCAATTAGGGCACGCACATTAC 59.319 45.455 0.00 0.00 0.00 1.89
4756 5408 8.393366 CACATTACAAGATGATCTGTTGGTTAG 58.607 37.037 0.00 0.00 32.51 2.34
4780 5432 6.383726 AGTTTATTTATGGTTGGTGATGGCAT 59.616 34.615 0.00 0.00 0.00 4.40
4854 5506 1.533625 ATCACCACCGGTCAATGTTG 58.466 50.000 2.59 0.00 31.02 3.33
4976 5628 4.707030 ACATGCATGTGGACATTTACAG 57.293 40.909 30.92 0.13 40.03 2.74
5043 5695 4.409570 CTTCTTGCTGACCATCATTTTCG 58.590 43.478 0.00 0.00 0.00 3.46
5044 5696 3.673902 TCTTGCTGACCATCATTTTCGA 58.326 40.909 0.00 0.00 0.00 3.71
5137 5792 2.554032 CAGCTGGAACGGAATGTTTCTT 59.446 45.455 5.57 0.00 42.09 2.52
5220 5875 3.823304 AGGAACAATTGACTTCTTCAGCC 59.177 43.478 13.59 0.00 34.94 4.85
5224 5879 4.936891 ACAATTGACTTCTTCAGCCAAAC 58.063 39.130 13.59 0.00 34.94 2.93
5225 5880 4.402155 ACAATTGACTTCTTCAGCCAAACA 59.598 37.500 13.59 0.00 34.94 2.83
5242 5897 5.333263 GCCAAACAATTATCTTTGCACACAC 60.333 40.000 0.00 0.00 0.00 3.82
5245 5900 4.549458 ACAATTATCTTTGCACACACAGC 58.451 39.130 0.00 0.00 0.00 4.40
5315 6361 5.543507 AGGGCATCATCTTCAAGTAGTAG 57.456 43.478 0.00 0.00 0.00 2.57
5316 6362 4.346418 AGGGCATCATCTTCAAGTAGTAGG 59.654 45.833 0.00 0.00 0.00 3.18
5317 6363 4.345257 GGGCATCATCTTCAAGTAGTAGGA 59.655 45.833 0.00 0.00 0.00 2.94
5318 6364 5.293560 GGCATCATCTTCAAGTAGTAGGAC 58.706 45.833 0.00 0.00 0.00 3.85
5319 6365 5.069781 GGCATCATCTTCAAGTAGTAGGACT 59.930 44.000 0.00 0.00 0.00 3.85
5320 6366 6.212955 GCATCATCTTCAAGTAGTAGGACTC 58.787 44.000 0.00 0.00 0.00 3.36
5321 6367 6.183360 GCATCATCTTCAAGTAGTAGGACTCA 60.183 42.308 0.00 0.00 0.00 3.41
5323 6369 7.776618 TCATCTTCAAGTAGTAGGACTCAAA 57.223 36.000 0.00 0.00 0.00 2.69
5324 6370 7.831753 TCATCTTCAAGTAGTAGGACTCAAAG 58.168 38.462 0.00 0.00 0.00 2.77
5325 6371 7.670140 TCATCTTCAAGTAGTAGGACTCAAAGA 59.330 37.037 0.00 0.00 35.79 2.52
5326 6372 7.455641 TCTTCAAGTAGTAGGACTCAAAGAG 57.544 40.000 0.00 0.00 31.44 2.85
5327 6373 5.646577 TCAAGTAGTAGGACTCAAAGAGC 57.353 43.478 0.00 0.00 32.04 4.09
5328 6374 5.077564 TCAAGTAGTAGGACTCAAAGAGCA 58.922 41.667 0.00 0.00 32.04 4.26
5329 6375 5.538813 TCAAGTAGTAGGACTCAAAGAGCAA 59.461 40.000 0.00 0.00 32.04 3.91
5330 6376 5.394224 AGTAGTAGGACTCAAAGAGCAAC 57.606 43.478 0.00 0.00 32.04 4.17
5331 6377 5.081032 AGTAGTAGGACTCAAAGAGCAACT 58.919 41.667 0.00 0.00 32.04 3.16
5332 6378 4.529109 AGTAGGACTCAAAGAGCAACTC 57.471 45.455 0.00 0.00 32.04 3.01
5333 6379 4.156477 AGTAGGACTCAAAGAGCAACTCT 58.844 43.478 0.00 0.00 43.37 3.24
5334 6380 5.326069 AGTAGGACTCAAAGAGCAACTCTA 58.674 41.667 0.00 0.00 40.28 2.43
5335 6381 5.775701 AGTAGGACTCAAAGAGCAACTCTAA 59.224 40.000 0.00 0.00 40.28 2.10
5336 6382 5.753721 AGGACTCAAAGAGCAACTCTAAT 57.246 39.130 0.00 0.00 40.28 1.73
5337 6383 5.486526 AGGACTCAAAGAGCAACTCTAATG 58.513 41.667 0.00 1.36 40.28 1.90
5338 6384 4.633565 GGACTCAAAGAGCAACTCTAATGG 59.366 45.833 0.00 0.00 40.28 3.16
5339 6385 4.583871 ACTCAAAGAGCAACTCTAATGGG 58.416 43.478 0.00 3.51 40.28 4.00
5340 6386 3.944015 CTCAAAGAGCAACTCTAATGGGG 59.056 47.826 0.00 0.00 40.28 4.96
5341 6387 2.424956 CAAAGAGCAACTCTAATGGGGC 59.575 50.000 0.00 0.00 40.28 5.80
5342 6388 0.179000 AGAGCAACTCTAATGGGGCG 59.821 55.000 0.00 0.00 39.28 6.13
5343 6389 0.178068 GAGCAACTCTAATGGGGCGA 59.822 55.000 0.00 0.00 0.00 5.54
5344 6390 0.839946 AGCAACTCTAATGGGGCGAT 59.160 50.000 0.00 0.00 0.00 4.58
5345 6391 1.202698 AGCAACTCTAATGGGGCGATC 60.203 52.381 0.00 0.00 0.00 3.69
5346 6392 1.884235 CAACTCTAATGGGGCGATCC 58.116 55.000 0.00 0.00 0.00 3.36
5347 6393 1.140852 CAACTCTAATGGGGCGATCCA 59.859 52.381 0.00 0.00 41.60 3.41
5352 6398 4.481195 ATGGGGCGATCCATTTCG 57.519 55.556 4.40 0.00 44.55 3.46
5353 6399 1.531748 ATGGGGCGATCCATTTCGT 59.468 52.632 4.40 0.00 44.55 3.85
5354 6400 0.535102 ATGGGGCGATCCATTTCGTC 60.535 55.000 4.40 0.00 44.55 4.20
5355 6401 1.146263 GGGGCGATCCATTTCGTCT 59.854 57.895 0.00 0.00 43.09 4.18
5356 6402 1.160329 GGGGCGATCCATTTCGTCTG 61.160 60.000 0.00 0.00 43.09 3.51
5357 6403 1.643832 GGCGATCCATTTCGTCTGC 59.356 57.895 0.00 0.00 40.47 4.26
5358 6404 1.643832 GCGATCCATTTCGTCTGCC 59.356 57.895 0.00 0.00 41.16 4.85
5359 6405 1.927210 CGATCCATTTCGTCTGCCG 59.073 57.895 0.00 0.00 34.46 5.69
5360 6406 1.643832 GATCCATTTCGTCTGCCGC 59.356 57.895 0.00 0.00 36.19 6.53
5361 6407 1.776034 GATCCATTTCGTCTGCCGCC 61.776 60.000 0.00 0.00 36.19 6.13
5362 6408 3.864686 CCATTTCGTCTGCCGCCG 61.865 66.667 0.00 0.00 36.19 6.46
5363 6409 3.118454 CATTTCGTCTGCCGCCGT 61.118 61.111 0.00 0.00 36.19 5.68
5364 6410 2.813908 ATTTCGTCTGCCGCCGTC 60.814 61.111 0.00 0.00 36.19 4.79
5388 6434 3.652000 GGTCGGCGCGGACAAAAA 61.652 61.111 38.05 8.89 38.70 1.94
5402 6448 3.039134 AAAAAGAGGCCCAACGCG 58.961 55.556 3.53 3.53 38.94 6.01
5403 6449 2.561037 AAAAAGAGGCCCAACGCGG 61.561 57.895 12.47 0.00 38.94 6.46
5413 6459 3.732892 CAACGCGGCGACCCAAAT 61.733 61.111 30.94 0.52 0.00 2.32
5414 6460 3.428282 AACGCGGCGACCCAAATC 61.428 61.111 30.94 0.00 0.00 2.17
5417 6463 3.059386 GCGGCGACCCAAATCCAA 61.059 61.111 12.98 0.00 0.00 3.53
5418 6464 2.631580 GCGGCGACCCAAATCCAAA 61.632 57.895 12.98 0.00 0.00 3.28
5419 6465 1.944234 GCGGCGACCCAAATCCAAAT 61.944 55.000 12.98 0.00 0.00 2.32
5420 6466 0.179140 CGGCGACCCAAATCCAAATG 60.179 55.000 0.00 0.00 0.00 2.32
5421 6467 0.175531 GGCGACCCAAATCCAAATGG 59.824 55.000 0.00 0.00 36.42 3.16
5432 6478 2.309528 TCCAAATGGAGTCCGATTCG 57.690 50.000 4.30 0.00 39.78 3.34
5433 6479 0.657840 CCAAATGGAGTCCGATTCGC 59.342 55.000 4.30 0.00 37.39 4.70
5434 6480 0.301687 CAAATGGAGTCCGATTCGCG 59.698 55.000 0.00 0.00 40.47 5.87
5435 6481 0.108329 AAATGGAGTCCGATTCGCGT 60.108 50.000 5.77 0.00 38.67 6.01
5436 6482 0.527817 AATGGAGTCCGATTCGCGTC 60.528 55.000 5.77 0.00 38.67 5.19
5437 6483 2.278661 GGAGTCCGATTCGCGTCC 60.279 66.667 5.77 0.00 38.67 4.79
5438 6484 2.651232 GAGTCCGATTCGCGTCCG 60.651 66.667 5.77 8.28 38.67 4.79
5439 6485 3.104602 GAGTCCGATTCGCGTCCGA 62.105 63.158 5.77 0.00 42.66 4.55
5440 6486 2.651232 GTCCGATTCGCGTCCGAG 60.651 66.667 5.77 3.30 45.35 4.63
5441 6487 4.547905 TCCGATTCGCGTCCGAGC 62.548 66.667 5.77 0.00 45.35 5.03
5444 6490 4.547905 GATTCGCGTCCGAGCCGA 62.548 66.667 5.77 0.00 45.35 5.54
5445 6491 4.849329 ATTCGCGTCCGAGCCGAC 62.849 66.667 5.77 0.00 45.35 4.79
5451 6497 2.813908 GTCCGAGCCGACGCATTT 60.814 61.111 0.00 0.00 37.52 2.32
5452 6498 2.813474 TCCGAGCCGACGCATTTG 60.813 61.111 0.00 0.00 37.52 2.32
5453 6499 3.118454 CCGAGCCGACGCATTTGT 61.118 61.111 0.00 0.00 37.52 2.83
5454 6500 2.096406 CGAGCCGACGCATTTGTG 59.904 61.111 0.00 0.00 37.52 3.33
5455 6501 2.480555 GAGCCGACGCATTTGTGG 59.519 61.111 0.00 0.00 37.52 4.17
5456 6502 3.667429 GAGCCGACGCATTTGTGGC 62.667 63.158 0.00 0.00 46.07 5.01
5457 6503 4.776647 GCCGACGCATTTGTGGCC 62.777 66.667 0.00 0.00 39.83 5.36
5458 6504 4.114997 CCGACGCATTTGTGGCCC 62.115 66.667 0.00 0.00 0.00 5.80
5459 6505 3.361158 CGACGCATTTGTGGCCCA 61.361 61.111 0.00 0.00 0.00 5.36
5460 6506 2.913765 CGACGCATTTGTGGCCCAA 61.914 57.895 0.00 0.55 0.00 4.12
5461 6507 1.365633 GACGCATTTGTGGCCCAAA 59.634 52.632 18.05 18.05 46.59 3.28
5467 6513 2.997899 TTTGTGGCCCAAATTTGCG 58.002 47.368 12.92 5.53 38.12 4.85
5468 6514 1.162800 TTTGTGGCCCAAATTTGCGC 61.163 50.000 17.64 17.64 38.12 6.09
5471 6517 4.776322 GGCCCAAATTTGCGCCCC 62.776 66.667 29.03 14.66 44.40 5.80
5472 6518 4.776322 GCCCAAATTTGCGCCCCC 62.776 66.667 15.50 0.00 0.00 5.40
5473 6519 3.317571 CCCAAATTTGCGCCCCCA 61.318 61.111 12.92 0.00 0.00 4.96
5474 6520 2.746359 CCAAATTTGCGCCCCCAA 59.254 55.556 12.92 0.00 0.00 4.12
5475 6521 1.072159 CCAAATTTGCGCCCCCAAA 59.928 52.632 12.92 0.00 38.87 3.28
5476 6522 0.322366 CCAAATTTGCGCCCCCAAAT 60.322 50.000 12.92 0.47 44.81 2.32
5477 6523 0.803740 CAAATTTGCGCCCCCAAATG 59.196 50.000 4.18 0.00 42.78 2.32
5478 6524 0.959867 AAATTTGCGCCCCCAAATGC 60.960 50.000 4.18 0.00 42.78 3.56
5524 6570 3.112709 GCGTGCCTTCTCGGTGTC 61.113 66.667 0.00 0.00 34.25 3.67
5525 6571 2.432628 CGTGCCTTCTCGGTGTCC 60.433 66.667 0.00 0.00 34.25 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 5.991328 ATGAGAACGTATTACCATGCAAG 57.009 39.130 0.00 0.00 0.00 4.01
61 63 5.929992 TCTTTTTAGTATTGTCAGGTCGGTG 59.070 40.000 0.00 0.00 0.00 4.94
75 77 4.863491 AGCGTTCTGTCGTCTTTTTAGTA 58.137 39.130 0.00 0.00 0.00 1.82
79 81 3.246936 GGTTAGCGTTCTGTCGTCTTTTT 59.753 43.478 0.00 0.00 0.00 1.94
87 89 2.991866 GTGTAAGGGTTAGCGTTCTGTC 59.008 50.000 0.00 0.00 0.00 3.51
102 104 5.766150 TGGTTGATGTTCCTTTGTGTAAG 57.234 39.130 0.00 0.00 0.00 2.34
118 120 8.243961 TGATTGTATTTTTCCTTCTTGGTTGA 57.756 30.769 0.00 0.00 37.07 3.18
130 132 9.657121 GATTCTTCGATCCTGATTGTATTTTTC 57.343 33.333 0.00 0.00 0.00 2.29
144 146 4.664150 AGTTCAGAGGATTCTTCGATCC 57.336 45.455 0.00 0.00 44.91 3.36
196 198 2.830370 GGTGGCTGCTATGGTGGC 60.830 66.667 0.00 0.00 0.00 5.01
262 265 4.862902 AGCTGCATATCAACGATAGAGT 57.137 40.909 1.02 0.00 41.38 3.24
305 308 5.562635 ACGGTAATGATTTCACCTTTGGTA 58.437 37.500 0.00 0.00 32.11 3.25
336 339 1.668151 GGTGTTGCCTCGGTCTGAC 60.668 63.158 0.00 0.00 0.00 3.51
355 358 0.108804 GAGTTTGATGGAGCGTCCGA 60.109 55.000 0.00 0.00 40.17 4.55
384 387 1.599071 CGTCTTAGTCGTATGGCGGTA 59.401 52.381 0.00 0.00 41.72 4.02
410 413 6.069673 TGTGGATGACAGGTATGGTTTTATCT 60.070 38.462 0.00 0.00 0.00 1.98
413 416 5.506730 TGTGGATGACAGGTATGGTTTTA 57.493 39.130 0.00 0.00 0.00 1.52
439 442 1.963515 GGATTCTGTGCTGGGTTTGTT 59.036 47.619 0.00 0.00 0.00 2.83
482 489 0.248054 GATGCGGGTTGTTGTATGCG 60.248 55.000 0.00 0.00 0.00 4.73
539 546 0.179181 CATTGCGACGCATTTGCTCT 60.179 50.000 25.09 0.00 38.76 4.09
644 659 2.367567 GCGATTAGTCCTATGGTTGGGA 59.632 50.000 0.00 0.00 0.00 4.37
659 674 1.063190 TCTTCCCTGAGGAGGCGATTA 60.063 52.381 0.00 0.00 45.19 1.75
697 721 4.520846 CTTCAACGGCGGCGATGC 62.521 66.667 38.93 0.00 0.00 3.91
718 742 6.389906 CAGGTTTTTAGGTTGTTCATCATCC 58.610 40.000 0.00 0.00 36.46 3.51
743 770 1.465187 GCGTGTGGATCGTTTTTAGGC 60.465 52.381 0.00 0.00 0.00 3.93
745 772 1.201877 CCGCGTGTGGATCGTTTTTAG 60.202 52.381 4.92 0.00 0.00 1.85
794 832 4.675029 CCGCCAACGACCTCGGTT 62.675 66.667 0.00 0.00 43.93 4.44
879 919 2.151369 TTTTTCCCTCTCGGTGCCT 58.849 52.632 0.00 0.00 0.00 4.75
880 920 4.813346 TTTTTCCCTCTCGGTGCC 57.187 55.556 0.00 0.00 0.00 5.01
896 936 5.423931 ACAACTCCAAACATACCCACTTTTT 59.576 36.000 0.00 0.00 0.00 1.94
897 937 4.959839 ACAACTCCAAACATACCCACTTTT 59.040 37.500 0.00 0.00 0.00 2.27
898 938 4.542697 ACAACTCCAAACATACCCACTTT 58.457 39.130 0.00 0.00 0.00 2.66
899 939 4.178956 ACAACTCCAAACATACCCACTT 57.821 40.909 0.00 0.00 0.00 3.16
900 940 3.876309 ACAACTCCAAACATACCCACT 57.124 42.857 0.00 0.00 0.00 4.00
901 941 4.007659 CCTACAACTCCAAACATACCCAC 58.992 47.826 0.00 0.00 0.00 4.61
902 942 3.653836 ACCTACAACTCCAAACATACCCA 59.346 43.478 0.00 0.00 0.00 4.51
903 943 4.296621 ACCTACAACTCCAAACATACCC 57.703 45.455 0.00 0.00 0.00 3.69
904 944 5.557866 AGAACCTACAACTCCAAACATACC 58.442 41.667 0.00 0.00 0.00 2.73
905 945 7.506328 AAAGAACCTACAACTCCAAACATAC 57.494 36.000 0.00 0.00 0.00 2.39
906 946 8.528044 AAAAAGAACCTACAACTCCAAACATA 57.472 30.769 0.00 0.00 0.00 2.29
907 947 7.418337 AAAAAGAACCTACAACTCCAAACAT 57.582 32.000 0.00 0.00 0.00 2.71
908 948 6.844097 AAAAAGAACCTACAACTCCAAACA 57.156 33.333 0.00 0.00 0.00 2.83
933 973 6.664384 ACCTACAACTCCAAACCAACTAAAAA 59.336 34.615 0.00 0.00 0.00 1.94
934 974 6.189133 ACCTACAACTCCAAACCAACTAAAA 58.811 36.000 0.00 0.00 0.00 1.52
935 975 5.757988 ACCTACAACTCCAAACCAACTAAA 58.242 37.500 0.00 0.00 0.00 1.85
936 976 5.376756 ACCTACAACTCCAAACCAACTAA 57.623 39.130 0.00 0.00 0.00 2.24
937 977 5.511888 GCTACCTACAACTCCAAACCAACTA 60.512 44.000 0.00 0.00 0.00 2.24
938 978 3.945640 ACCTACAACTCCAAACCAACT 57.054 42.857 0.00 0.00 0.00 3.16
939 979 3.501062 GCTACCTACAACTCCAAACCAAC 59.499 47.826 0.00 0.00 0.00 3.77
940 980 3.136809 TGCTACCTACAACTCCAAACCAA 59.863 43.478 0.00 0.00 0.00 3.67
941 981 2.706723 TGCTACCTACAACTCCAAACCA 59.293 45.455 0.00 0.00 0.00 3.67
942 982 3.072211 GTGCTACCTACAACTCCAAACC 58.928 50.000 0.00 0.00 0.00 3.27
943 983 3.072211 GGTGCTACCTACAACTCCAAAC 58.928 50.000 0.00 0.00 34.73 2.93
944 984 2.289195 CGGTGCTACCTACAACTCCAAA 60.289 50.000 4.21 0.00 35.66 3.28
945 985 1.274167 CGGTGCTACCTACAACTCCAA 59.726 52.381 4.21 0.00 35.66 3.53
946 986 0.892755 CGGTGCTACCTACAACTCCA 59.107 55.000 4.21 0.00 35.66 3.86
947 987 0.175073 CCGGTGCTACCTACAACTCC 59.825 60.000 0.00 0.00 35.66 3.85
948 988 0.893447 ACCGGTGCTACCTACAACTC 59.107 55.000 6.12 0.00 35.66 3.01
952 992 1.202114 CGTTAACCGGTGCTACCTACA 59.798 52.381 8.52 0.00 35.66 2.74
989 1029 2.997315 TCACGGCCCAGGACTCTG 60.997 66.667 0.00 0.00 40.59 3.35
990 1030 2.997897 GTCACGGCCCAGGACTCT 60.998 66.667 0.00 0.00 0.00 3.24
1040 1080 2.387772 CGGAGGAGGAGGAGGAGGA 61.388 68.421 0.00 0.00 0.00 3.71
1041 1081 2.197324 CGGAGGAGGAGGAGGAGG 59.803 72.222 0.00 0.00 0.00 4.30
1042 1082 2.520741 GCGGAGGAGGAGGAGGAG 60.521 72.222 0.00 0.00 0.00 3.69
1043 1083 4.144727 GGCGGAGGAGGAGGAGGA 62.145 72.222 0.00 0.00 0.00 3.71
1044 1084 2.299727 TAAGGCGGAGGAGGAGGAGG 62.300 65.000 0.00 0.00 0.00 4.30
1045 1085 0.397254 TTAAGGCGGAGGAGGAGGAG 60.397 60.000 0.00 0.00 0.00 3.69
1046 1086 0.686769 GTTAAGGCGGAGGAGGAGGA 60.687 60.000 0.00 0.00 0.00 3.71
1047 1087 1.823976 GTTAAGGCGGAGGAGGAGG 59.176 63.158 0.00 0.00 0.00 4.30
1048 1088 1.437986 CGTTAAGGCGGAGGAGGAG 59.562 63.158 0.00 0.00 0.00 3.69
1049 1089 2.718073 GCGTTAAGGCGGAGGAGGA 61.718 63.158 4.12 0.00 0.00 3.71
1050 1090 2.202892 GCGTTAAGGCGGAGGAGG 60.203 66.667 4.12 0.00 0.00 4.30
1051 1091 2.202892 GGCGTTAAGGCGGAGGAG 60.203 66.667 13.56 0.00 35.04 3.69
1058 1098 1.093496 AGTTATGCGGGCGTTAAGGC 61.093 55.000 11.68 11.68 45.91 4.35
1169 1228 1.846124 GGGAAGACACTGGGTGGGA 60.846 63.158 0.00 0.00 37.94 4.37
1187 1246 2.689034 GTGTGGAGGGGGAGAGGG 60.689 72.222 0.00 0.00 0.00 4.30
1195 1254 3.174987 TGGTGGTGGTGTGGAGGG 61.175 66.667 0.00 0.00 0.00 4.30
1212 1271 2.516888 CCCTCGAACCTGTGGTGGT 61.517 63.158 0.00 0.00 43.11 4.16
1403 1492 3.007473 TCTTAATTAAACCCCGGGCAG 57.993 47.619 17.73 4.73 0.00 4.85
1564 1660 3.861840 TCAAATCTGGAAGTAGAAGGCG 58.138 45.455 0.00 0.00 33.76 5.52
1595 1692 4.447724 CCAGTGAACCCATCGTATATTTCG 59.552 45.833 0.00 0.00 0.00 3.46
1600 1697 4.216902 CGTATCCAGTGAACCCATCGTATA 59.783 45.833 0.00 0.00 0.00 1.47
1609 1746 0.108138 AGCAGCGTATCCAGTGAACC 60.108 55.000 0.00 0.00 0.00 3.62
1619 1756 2.031683 GCAATTAACCGAAGCAGCGTAT 59.968 45.455 0.00 0.00 0.00 3.06
1620 1757 1.395608 GCAATTAACCGAAGCAGCGTA 59.604 47.619 0.00 0.00 0.00 4.42
1622 1759 0.167908 TGCAATTAACCGAAGCAGCG 59.832 50.000 0.00 0.00 0.00 5.18
1630 1767 1.405469 GCGCTTGCTGCAATTAACCG 61.405 55.000 16.38 13.63 43.06 4.44
1640 1783 3.341043 ACACTGACGCGCTTGCTG 61.341 61.111 5.73 0.00 36.08 4.41
1647 1790 3.756677 CTCGTGCACACTGACGCG 61.757 66.667 18.64 3.53 40.97 6.01
1648 1791 4.064491 GCTCGTGCACACTGACGC 62.064 66.667 18.64 8.01 39.41 5.19
1657 1800 0.679505 ACTAAGGTTCAGCTCGTGCA 59.320 50.000 12.58 0.00 42.74 4.57
1658 1801 2.094649 AGTACTAAGGTTCAGCTCGTGC 60.095 50.000 0.07 0.07 40.05 5.34
1661 1804 3.057456 ACACAGTACTAAGGTTCAGCTCG 60.057 47.826 0.00 0.00 0.00 5.03
1671 1820 5.305585 ACATGACCCAAACACAGTACTAAG 58.694 41.667 0.00 0.00 0.00 2.18
1693 1842 7.813148 TGTGATGTTAAGCAGTAAGAACTAGAC 59.187 37.037 0.00 0.00 33.48 2.59
1700 1849 6.591448 CACTGATGTGATGTTAAGCAGTAAGA 59.409 38.462 0.00 0.00 46.55 2.10
1704 1853 3.438087 GCACTGATGTGATGTTAAGCAGT 59.562 43.478 0.00 0.00 46.55 4.40
1705 1854 3.437741 TGCACTGATGTGATGTTAAGCAG 59.562 43.478 0.00 0.00 46.55 4.24
1708 1857 4.692155 TCACTGCACTGATGTGATGTTAAG 59.308 41.667 1.86 0.00 46.55 1.85
1709 1858 4.640364 TCACTGCACTGATGTGATGTTAA 58.360 39.130 1.86 0.00 46.55 2.01
1710 1859 4.270245 TCACTGCACTGATGTGATGTTA 57.730 40.909 1.86 0.00 46.55 2.41
1711 1860 3.130280 TCACTGCACTGATGTGATGTT 57.870 42.857 1.86 0.00 46.55 2.71
1712 1861 2.845363 TCACTGCACTGATGTGATGT 57.155 45.000 1.86 0.00 46.55 3.06
1713 1862 3.439129 ACATTCACTGCACTGATGTGATG 59.561 43.478 6.57 9.17 46.55 3.07
1766 1915 3.446442 ACCAGATGAGGTCAAGCAAAT 57.554 42.857 0.00 0.00 37.28 2.32
1805 1956 6.014647 TCCTAACAACCTGTAGTGTAGTGAT 58.985 40.000 0.00 0.00 0.00 3.06
1808 1959 6.254522 AGATCCTAACAACCTGTAGTGTAGT 58.745 40.000 0.00 0.00 0.00 2.73
1809 1960 6.777213 AGATCCTAACAACCTGTAGTGTAG 57.223 41.667 0.00 0.00 0.00 2.74
1810 1961 6.495872 ACAAGATCCTAACAACCTGTAGTGTA 59.504 38.462 0.00 0.00 0.00 2.90
1811 1962 5.307196 ACAAGATCCTAACAACCTGTAGTGT 59.693 40.000 0.00 0.00 0.00 3.55
1812 1963 5.794894 ACAAGATCCTAACAACCTGTAGTG 58.205 41.667 0.00 0.00 0.00 2.74
1813 1964 5.780793 AGACAAGATCCTAACAACCTGTAGT 59.219 40.000 0.00 0.00 0.00 2.73
1842 1993 2.433146 GGACGGCTAACTCCCTCCC 61.433 68.421 0.00 0.00 0.00 4.30
1866 2017 1.202568 CGAAGCTTGTGAGTGCGTG 59.797 57.895 2.10 0.00 0.00 5.34
1868 2019 1.202568 CACGAAGCTTGTGAGTGCG 59.797 57.895 18.50 10.59 39.73 5.34
1902 2053 9.615295 GCGGAAGTGTAATTTTGTATTTAAGAA 57.385 29.630 0.00 0.00 0.00 2.52
1904 2055 8.958175 TGCGGAAGTGTAATTTTGTATTTAAG 57.042 30.769 0.00 0.00 0.00 1.85
1927 2078 5.682862 CCGCAATTAACTGAAATACTCATGC 59.317 40.000 0.00 0.00 32.14 4.06
1928 2079 6.785191 ACCGCAATTAACTGAAATACTCATG 58.215 36.000 0.00 0.00 32.14 3.07
1958 2112 7.993183 ACTTCTCCTTCTCAAGAAACACAAATA 59.007 33.333 0.00 0.00 33.07 1.40
1959 2113 6.830838 ACTTCTCCTTCTCAAGAAACACAAAT 59.169 34.615 0.00 0.00 33.07 2.32
1989 2144 7.201393 CGTGATCTGAATTCGCTAATATCCTTC 60.201 40.741 0.04 0.00 0.00 3.46
1997 2152 3.130516 AGTCCGTGATCTGAATTCGCTAA 59.869 43.478 0.04 0.00 0.00 3.09
1999 2154 1.478510 AGTCCGTGATCTGAATTCGCT 59.521 47.619 0.04 0.00 0.00 4.93
2000 2155 1.927895 AGTCCGTGATCTGAATTCGC 58.072 50.000 0.04 0.00 0.00 4.70
2001 2156 2.604914 CCAAGTCCGTGATCTGAATTCG 59.395 50.000 0.04 0.00 0.00 3.34
2011 2166 0.830444 ACACCTAGCCAAGTCCGTGA 60.830 55.000 0.00 0.00 0.00 4.35
2023 2178 2.352814 CCAGTCTCCAAACGACACCTAG 60.353 54.545 0.00 0.00 33.89 3.02
2083 2238 5.363580 ACCCTGTGTCATGATTGTTCTTTTT 59.636 36.000 0.00 0.00 0.00 1.94
2088 2243 3.149196 ACACCCTGTGTCATGATTGTTC 58.851 45.455 0.00 0.00 43.92 3.18
2091 2246 4.701651 ACATAACACCCTGTGTCATGATTG 59.298 41.667 15.55 4.38 46.79 2.67
2092 2247 4.701651 CACATAACACCCTGTGTCATGATT 59.298 41.667 15.55 0.00 46.79 2.57
2093 2248 4.264253 CACATAACACCCTGTGTCATGAT 58.736 43.478 15.55 0.24 46.79 2.45
2094 2249 3.558958 CCACATAACACCCTGTGTCATGA 60.559 47.826 15.55 0.00 46.79 3.07
2095 2250 2.749076 CCACATAACACCCTGTGTCATG 59.251 50.000 8.58 8.58 46.79 3.07
2096 2251 2.642311 TCCACATAACACCCTGTGTCAT 59.358 45.455 0.00 0.00 46.79 3.06
2097 2252 2.050918 TCCACATAACACCCTGTGTCA 58.949 47.619 0.00 0.00 46.79 3.58
2098 2253 2.851263 TCCACATAACACCCTGTGTC 57.149 50.000 0.00 0.00 46.79 3.67
2101 2256 1.564348 GGGATCCACATAACACCCTGT 59.436 52.381 15.23 0.00 35.03 4.00
2102 2257 1.846439 AGGGATCCACATAACACCCTG 59.154 52.381 15.23 0.00 44.84 4.45
2103 2258 2.286935 AGGGATCCACATAACACCCT 57.713 50.000 15.23 0.00 42.24 4.34
2107 2262 6.985653 TTTTTCAAAGGGATCCACATAACA 57.014 33.333 15.23 0.00 0.00 2.41
2110 2265 9.936759 GTTTTATTTTTCAAAGGGATCCACATA 57.063 29.630 15.23 0.00 0.00 2.29
2112 2267 7.796054 TGTTTTATTTTTCAAAGGGATCCACA 58.204 30.769 15.23 0.00 0.00 4.17
2113 2268 8.669946 TTGTTTTATTTTTCAAAGGGATCCAC 57.330 30.769 15.23 2.86 0.00 4.02
2114 2269 8.490311 ACTTGTTTTATTTTTCAAAGGGATCCA 58.510 29.630 15.23 0.00 0.00 3.41
2115 2270 8.902540 ACTTGTTTTATTTTTCAAAGGGATCC 57.097 30.769 1.92 1.92 0.00 3.36
2117 2272 8.620416 GCAACTTGTTTTATTTTTCAAAGGGAT 58.380 29.630 0.00 0.00 0.00 3.85
2119 2274 7.909641 CAGCAACTTGTTTTATTTTTCAAAGGG 59.090 33.333 0.00 0.00 0.00 3.95
2120 2275 7.429051 GCAGCAACTTGTTTTATTTTTCAAAGG 59.571 33.333 0.00 0.00 0.00 3.11
2122 2277 6.958193 CGCAGCAACTTGTTTTATTTTTCAAA 59.042 30.769 0.00 0.00 0.00 2.69
2125 2285 5.431309 CCGCAGCAACTTGTTTTATTTTTC 58.569 37.500 0.00 0.00 0.00 2.29
2131 2291 3.560826 GCCGCAGCAACTTGTTTTA 57.439 47.368 0.00 0.00 39.53 1.52
2169 2329 6.262193 AGCTTAGAACAGAGAACAGAGTAC 57.738 41.667 0.00 0.00 0.00 2.73
2172 2332 6.509418 AGTAGCTTAGAACAGAGAACAGAG 57.491 41.667 0.00 0.00 0.00 3.35
2173 2333 6.902771 AAGTAGCTTAGAACAGAGAACAGA 57.097 37.500 0.00 0.00 0.00 3.41
2174 2334 9.296400 GATTAAGTAGCTTAGAACAGAGAACAG 57.704 37.037 0.00 0.00 0.00 3.16
2175 2335 9.026121 AGATTAAGTAGCTTAGAACAGAGAACA 57.974 33.333 0.00 0.00 0.00 3.18
2176 2336 9.296400 CAGATTAAGTAGCTTAGAACAGAGAAC 57.704 37.037 0.00 0.00 0.00 3.01
2177 2337 9.244292 TCAGATTAAGTAGCTTAGAACAGAGAA 57.756 33.333 0.00 0.00 0.00 2.87
2178 2338 8.809468 TCAGATTAAGTAGCTTAGAACAGAGA 57.191 34.615 0.00 0.00 0.00 3.10
2179 2339 9.862371 TTTCAGATTAAGTAGCTTAGAACAGAG 57.138 33.333 0.00 0.00 0.00 3.35
2208 2368 8.618702 TCGTATTAAATGTAACCAAAGGTTGA 57.381 30.769 11.51 0.00 46.35 3.18
2231 2391 9.638300 GACTTGTTGCATATTATTTACTTCTCG 57.362 33.333 0.00 0.00 0.00 4.04
2240 2400 9.453572 TGAAAGAGAGACTTGTTGCATATTATT 57.546 29.630 0.00 0.00 38.98 1.40
2251 2411 6.412362 ACATGTACTGAAAGAGAGACTTGT 57.588 37.500 0.00 0.00 38.98 3.16
2265 2425 4.201812 CCCTTGCGACATAAACATGTACTG 60.202 45.833 0.00 0.00 34.45 2.74
2280 2440 3.627395 AATCATGACTAACCCTTGCGA 57.373 42.857 0.00 0.00 0.00 5.10
2287 2447 7.150783 AGAAGCAAGAAAATCATGACTAACC 57.849 36.000 0.00 0.00 0.00 2.85
2291 2451 6.645790 ACAAGAAGCAAGAAAATCATGACT 57.354 33.333 0.00 0.00 0.00 3.41
2299 2459 3.766591 TCACCCAACAAGAAGCAAGAAAA 59.233 39.130 0.00 0.00 0.00 2.29
2310 2470 2.958355 ACATCCAGTTTCACCCAACAAG 59.042 45.455 0.00 0.00 0.00 3.16
2393 2555 4.066646 TCACGAGACCATCTCAAACAAA 57.933 40.909 6.64 0.00 43.55 2.83
2421 2583 8.851106 TTCTCCATCAGGCTAAGATATATGAT 57.149 34.615 0.00 0.00 33.74 2.45
2423 2585 8.538701 ACTTTCTCCATCAGGCTAAGATATATG 58.461 37.037 0.00 0.00 33.74 1.78
2424 2586 8.677870 ACTTTCTCCATCAGGCTAAGATATAT 57.322 34.615 0.00 0.00 33.74 0.86
2426 2588 8.538701 CATACTTTCTCCATCAGGCTAAGATAT 58.461 37.037 0.00 0.00 33.74 1.63
2455 2619 4.148128 AGTTGCTCAGGAACCATCATAG 57.852 45.455 5.26 0.00 0.00 2.23
2456 2620 4.574674 AAGTTGCTCAGGAACCATCATA 57.425 40.909 5.26 0.00 0.00 2.15
2457 2621 3.446442 AAGTTGCTCAGGAACCATCAT 57.554 42.857 5.26 0.00 0.00 2.45
2493 2657 4.416516 AGGAAGAACACATAAAAAGGGGG 58.583 43.478 0.00 0.00 0.00 5.40
2539 2755 3.119459 TCAGCGACAGTCTCCACTAATTC 60.119 47.826 0.00 0.00 0.00 2.17
2557 2773 1.343506 CAGCGGAAATTTTGCTCAGC 58.656 50.000 13.96 4.27 36.69 4.26
2558 2774 1.068055 AGCAGCGGAAATTTTGCTCAG 60.068 47.619 13.96 7.35 42.89 3.35
2571 2787 0.169672 CTTGATCACCAAAGCAGCGG 59.830 55.000 0.00 0.00 33.76 5.52
2658 2874 0.904865 TGGTAGCTCTGTGGGTCTGG 60.905 60.000 0.00 0.00 0.00 3.86
2674 2890 5.949354 TGGCAAGTAAATAAGCTAACATGGT 59.051 36.000 0.00 0.00 0.00 3.55
2690 2906 7.552687 CACTTTAAGATTACAGGATGGCAAGTA 59.447 37.037 0.00 0.00 43.62 2.24
2718 2934 6.456988 GCATGAGTAATAACTGTGTGTAAGCC 60.457 42.308 0.00 0.00 35.56 4.35
2722 2938 6.071051 TCCAGCATGAGTAATAACTGTGTGTA 60.071 38.462 0.00 0.00 39.69 2.90
2743 2959 3.881688 CCAGATCTGCTTTAATGGTCCAG 59.118 47.826 17.76 0.00 0.00 3.86
2749 2966 3.018856 TGGCACCAGATCTGCTTTAATG 58.981 45.455 17.76 8.66 34.84 1.90
2775 2992 4.961099 TGATGATCTGTCTCCTGACTCAAT 59.039 41.667 0.00 0.00 43.29 2.57
2796 3013 5.912090 CAGTACACTGCATCACCATATGTGA 60.912 44.000 1.24 6.25 46.43 3.58
2952 3170 4.898829 TCCAACATATTTGCCAAGATCG 57.101 40.909 0.00 0.00 0.00 3.69
2971 3190 7.896811 AGGATGGAACTATTTTCAAAGTTTCC 58.103 34.615 0.00 0.00 36.10 3.13
2978 3197 8.686334 GCAGAATTAGGATGGAACTATTTTCAA 58.314 33.333 0.00 0.00 0.00 2.69
2988 3207 2.852449 AGGGTGCAGAATTAGGATGGAA 59.148 45.455 0.00 0.00 0.00 3.53
3040 3259 5.567138 AAACATGAGCTACTTATGGCAAC 57.433 39.130 0.00 0.00 32.73 4.17
3058 3277 3.625313 TGCTTGAAGACAATGTCGAAACA 59.375 39.130 7.83 4.54 40.38 2.83
3059 3278 4.209452 TGCTTGAAGACAATGTCGAAAC 57.791 40.909 7.83 2.06 37.67 2.78
3060 3279 3.303990 GCTGCTTGAAGACAATGTCGAAA 60.304 43.478 7.83 3.37 37.67 3.46
3067 3287 3.484407 AGAAGTGCTGCTTGAAGACAAT 58.516 40.909 0.00 0.00 37.59 2.71
3079 3299 8.429493 TTGTATGATCAGAATTAGAAGTGCTG 57.571 34.615 0.09 0.00 0.00 4.41
3119 3345 5.468746 TGCTACACTTAGTTTGGCAGTAAAG 59.531 40.000 5.47 0.00 0.00 1.85
3197 3423 5.679734 AACACTGTTCTCAACATTAGCAG 57.320 39.130 0.00 0.00 41.26 4.24
3205 3431 9.593134 AGATCTAATGATAACACTGTTCTCAAC 57.407 33.333 12.52 3.54 32.19 3.18
3215 3441 8.097038 TGCATAGGGAAGATCTAATGATAACAC 58.903 37.037 0.00 0.00 32.19 3.32
3249 3833 6.054941 TGTTCTGAACAATAGCAGAGAAACA 58.945 36.000 20.14 0.00 41.67 2.83
3250 3834 6.545504 TGTTCTGAACAATAGCAGAGAAAC 57.454 37.500 20.14 0.00 41.67 2.78
3263 3847 5.263599 AGCCCATTCATATTGTTCTGAACA 58.736 37.500 18.69 18.69 40.21 3.18
3264 3848 5.841957 AGCCCATTCATATTGTTCTGAAC 57.158 39.130 13.49 13.49 34.43 3.18
3268 3852 5.824624 CAGTGTAGCCCATTCATATTGTTCT 59.175 40.000 0.00 0.00 0.00 3.01
3270 3854 5.590259 GTCAGTGTAGCCCATTCATATTGTT 59.410 40.000 0.00 0.00 0.00 2.83
3271 3855 5.126067 GTCAGTGTAGCCCATTCATATTGT 58.874 41.667 0.00 0.00 0.00 2.71
3272 3856 5.125356 TGTCAGTGTAGCCCATTCATATTG 58.875 41.667 0.00 0.00 0.00 1.90
3274 3862 5.072193 TCATGTCAGTGTAGCCCATTCATAT 59.928 40.000 0.00 0.00 0.00 1.78
3317 3905 7.556996 ATTGCTCTTCATAGAGAAAGAAAGCAT 59.443 33.333 6.37 0.00 46.82 3.79
3318 3906 6.883217 ATTGCTCTTCATAGAGAAAGAAAGCA 59.117 34.615 6.37 0.00 46.82 3.91
3319 3907 7.188157 CATTGCTCTTCATAGAGAAAGAAAGC 58.812 38.462 6.37 0.00 46.82 3.51
3320 3908 7.336427 ACCATTGCTCTTCATAGAGAAAGAAAG 59.664 37.037 6.37 0.00 46.82 2.62
3345 3948 6.147821 ACACAAGTGATTAGCAACTCATACAC 59.852 38.462 7.28 0.00 0.00 2.90
3352 3955 6.725246 GTGTAAACACAAGTGATTAGCAACT 58.275 36.000 7.28 0.00 45.75 3.16
3462 4065 1.017387 CGATAGGCTGGCCTTTTGAC 58.983 55.000 19.70 6.35 45.70 3.18
4003 4606 3.066481 GGTAGATCTCGGTGGTGTAGTTC 59.934 52.174 0.00 0.00 0.00 3.01
4057 4660 4.078516 AAGACGTAGCCCGCCACC 62.079 66.667 0.00 0.00 41.42 4.61
4087 4690 0.833287 AGTTGGTCATGATAGCCGCT 59.167 50.000 0.00 0.00 0.00 5.52
4117 4720 2.031516 CCTCAGACGGCTGTGCTTG 61.032 63.158 19.93 0.00 42.84 4.01
4129 4732 1.623811 GGTACACTTGCCTTCCTCAGA 59.376 52.381 0.00 0.00 0.00 3.27
4158 4764 3.446310 TTGTTCAGTAGTTCAGCGTGA 57.554 42.857 0.00 0.00 0.00 4.35
4162 4768 4.335594 ACAGGTTTTGTTCAGTAGTTCAGC 59.664 41.667 0.00 0.00 36.31 4.26
4212 4825 1.082496 GAACAGCTGCACAAGACGC 60.082 57.895 15.27 0.00 0.00 5.19
4213 4826 1.202568 CGAACAGCTGCACAAGACG 59.797 57.895 15.27 5.56 0.00 4.18
4214 4827 0.233332 GTCGAACAGCTGCACAAGAC 59.767 55.000 15.27 12.52 0.00 3.01
4260 4878 0.179084 GAAGAATCACCCATCGGCGA 60.179 55.000 13.87 13.87 0.00 5.54
4281 4899 3.744660 GTGTCTTCTTCACAGGAATGGT 58.255 45.455 0.00 0.00 36.05 3.55
4308 4926 2.483745 CAGATGCTGGCGTTGCAG 59.516 61.111 5.91 0.00 44.04 4.41
4309 4927 3.057548 CCAGATGCTGGCGTTGCA 61.058 61.111 0.00 2.39 45.13 4.08
4318 4936 5.014858 ACAAATGTTGAATCTCCAGATGCT 58.985 37.500 0.00 0.00 34.49 3.79
4378 4996 6.668323 AGTAGGAAATGTTTGTGTGAAATCG 58.332 36.000 0.00 0.00 0.00 3.34
4387 5005 5.123344 GGCACGATTAGTAGGAAATGTTTGT 59.877 40.000 0.00 0.00 0.00 2.83
4396 5014 3.382546 GGTACAAGGCACGATTAGTAGGA 59.617 47.826 0.00 0.00 0.00 2.94
4451 5069 8.894768 AAGAAATTACATCCTTCGGATAAGAG 57.105 34.615 0.00 0.00 40.98 2.85
4478 5096 6.490040 CCAGAGGAAGTTTTTCAACAATAGGA 59.510 38.462 0.00 0.00 35.05 2.94
4479 5097 6.294731 CCCAGAGGAAGTTTTTCAACAATAGG 60.295 42.308 0.00 0.00 34.90 2.57
4497 5117 2.294979 GGCGTAAATAAACCCCAGAGG 58.705 52.381 0.00 0.00 43.78 3.69
4524 5149 0.464036 TGGACTTGACAGCGACAACT 59.536 50.000 0.00 0.00 0.00 3.16
4531 5156 3.740115 TCTTAAGGTTGGACTTGACAGC 58.260 45.455 1.85 0.00 32.02 4.40
4532 5157 4.697352 CCATCTTAAGGTTGGACTTGACAG 59.303 45.833 16.22 0.00 37.04 3.51
4533 5158 4.104102 ACCATCTTAAGGTTGGACTTGACA 59.896 41.667 23.91 0.00 38.00 3.58
4579 5206 5.333299 TCAAAATGGCATGAAGAATGGAG 57.667 39.130 0.00 0.00 36.71 3.86
4583 5210 5.353394 AGCATCAAAATGGCATGAAGAAT 57.647 34.783 0.00 0.00 33.19 2.40
4620 5272 4.265073 ACTTCAAGTAAGATGACATGGGC 58.735 43.478 0.00 0.00 38.67 5.36
4679 5331 1.001048 CTTTGTAGACGACCGACCACA 60.001 52.381 0.00 0.00 0.00 4.17
4683 5335 2.693797 TGACTTTGTAGACGACCGAC 57.306 50.000 0.00 0.00 0.00 4.79
4686 5338 6.618811 TCTTCTAATGACTTTGTAGACGACC 58.381 40.000 0.00 0.00 0.00 4.79
4687 5339 8.021973 TCTTCTTCTAATGACTTTGTAGACGAC 58.978 37.037 0.00 0.00 0.00 4.34
4688 5340 8.107399 TCTTCTTCTAATGACTTTGTAGACGA 57.893 34.615 0.00 0.00 0.00 4.20
4690 5342 9.646427 ACATCTTCTTCTAATGACTTTGTAGAC 57.354 33.333 0.00 0.00 0.00 2.59
4691 5343 9.862371 GACATCTTCTTCTAATGACTTTGTAGA 57.138 33.333 0.00 0.00 0.00 2.59
4692 5344 9.645059 TGACATCTTCTTCTAATGACTTTGTAG 57.355 33.333 0.00 0.00 0.00 2.74
4693 5345 9.996554 TTGACATCTTCTTCTAATGACTTTGTA 57.003 29.630 0.00 0.00 0.00 2.41
4698 5350 9.829507 CCTAATTGACATCTTCTTCTAATGACT 57.170 33.333 0.00 0.00 0.00 3.41
4699 5351 9.050601 CCCTAATTGACATCTTCTTCTAATGAC 57.949 37.037 0.00 0.00 0.00 3.06
4701 5353 7.500227 TGCCCTAATTGACATCTTCTTCTAATG 59.500 37.037 0.00 0.00 0.00 1.90
4702 5354 7.500559 GTGCCCTAATTGACATCTTCTTCTAAT 59.499 37.037 0.00 0.00 0.00 1.73
4703 5355 6.823689 GTGCCCTAATTGACATCTTCTTCTAA 59.176 38.462 0.00 0.00 0.00 2.10
4704 5356 6.349300 GTGCCCTAATTGACATCTTCTTCTA 58.651 40.000 0.00 0.00 0.00 2.10
4705 5357 5.189180 GTGCCCTAATTGACATCTTCTTCT 58.811 41.667 0.00 0.00 0.00 2.85
4706 5358 4.034510 CGTGCCCTAATTGACATCTTCTTC 59.965 45.833 0.00 0.00 0.00 2.87
4707 5359 3.941483 CGTGCCCTAATTGACATCTTCTT 59.059 43.478 0.00 0.00 0.00 2.52
4708 5360 3.535561 CGTGCCCTAATTGACATCTTCT 58.464 45.455 0.00 0.00 0.00 2.85
4714 5366 0.250510 TGTGCGTGCCCTAATTGACA 60.251 50.000 0.00 0.00 0.00 3.58
4728 5380 5.260900 CAACAGATCATCTTGTAATGTGCG 58.739 41.667 0.00 0.00 0.00 5.34
4729 5381 5.124457 ACCAACAGATCATCTTGTAATGTGC 59.876 40.000 0.00 0.00 0.00 4.57
4730 5382 6.748333 ACCAACAGATCATCTTGTAATGTG 57.252 37.500 0.00 0.00 0.00 3.21
4731 5383 8.103305 ACTAACCAACAGATCATCTTGTAATGT 58.897 33.333 0.00 0.00 0.00 2.71
4732 5384 8.498054 ACTAACCAACAGATCATCTTGTAATG 57.502 34.615 0.00 0.00 0.00 1.90
4733 5385 9.520515 AAACTAACCAACAGATCATCTTGTAAT 57.479 29.630 0.00 0.00 0.00 1.89
4734 5386 8.918202 AAACTAACCAACAGATCATCTTGTAA 57.082 30.769 0.00 0.00 0.00 2.41
4756 5408 5.971763 TGCCATCACCAACCATAAATAAAC 58.028 37.500 0.00 0.00 0.00 2.01
4780 5432 0.035881 CAGAGAAAGCAGAGTGGCCA 59.964 55.000 0.00 0.00 0.00 5.36
4935 5587 9.809096 TGCATGTATGTACAAAAGAAAAGAAAA 57.191 25.926 0.00 0.00 39.99 2.29
4936 5588 9.979578 ATGCATGTATGTACAAAAGAAAAGAAA 57.020 25.926 0.00 0.00 39.99 2.52
4937 5589 9.409312 CATGCATGTATGTACAAAAGAAAAGAA 57.591 29.630 18.91 0.00 39.99 2.52
4938 5590 8.575589 ACATGCATGTATGTACAAAAGAAAAGA 58.424 29.630 30.50 0.00 39.40 2.52
4939 5591 8.641155 CACATGCATGTATGTACAAAAGAAAAG 58.359 33.333 30.92 9.48 39.17 2.27
4940 5592 7.598118 CCACATGCATGTATGTACAAAAGAAAA 59.402 33.333 30.92 0.00 39.17 2.29
4941 5593 7.040132 TCCACATGCATGTATGTACAAAAGAAA 60.040 33.333 30.92 5.02 39.17 2.52
4942 5594 6.432472 TCCACATGCATGTATGTACAAAAGAA 59.568 34.615 30.92 4.66 39.17 2.52
4943 5595 5.942826 TCCACATGCATGTATGTACAAAAGA 59.057 36.000 30.92 14.23 39.17 2.52
4944 5596 6.029607 GTCCACATGCATGTATGTACAAAAG 58.970 40.000 30.92 14.67 39.17 2.27
4945 5597 5.474876 TGTCCACATGCATGTATGTACAAAA 59.525 36.000 30.92 9.48 39.17 2.44
4946 5598 5.006386 TGTCCACATGCATGTATGTACAAA 58.994 37.500 30.92 10.36 39.17 2.83
4947 5599 4.583871 TGTCCACATGCATGTATGTACAA 58.416 39.130 30.92 13.38 39.17 2.41
4976 5628 1.200020 CCGCCACATCAAGGTCTTTTC 59.800 52.381 0.00 0.00 0.00 2.29
5043 5695 2.813042 GACAGCGAGGCAGCACTC 60.813 66.667 7.67 0.00 40.15 3.51
5044 5696 4.731612 CGACAGCGAGGCAGCACT 62.732 66.667 7.67 0.00 40.82 4.40
5100 5752 1.445582 CTGACCGGCGACAAGTACC 60.446 63.158 9.30 0.00 0.00 3.34
5102 5754 2.260434 GCTGACCGGCGACAAGTA 59.740 61.111 9.30 0.00 0.00 2.24
5137 5792 0.039618 GGGCCTTGTTGGATTCTGGA 59.960 55.000 0.84 0.00 38.35 3.86
5200 5855 4.836125 TGGCTGAAGAAGTCAATTGTTC 57.164 40.909 5.13 3.05 37.65 3.18
5220 5875 6.562640 GCTGTGTGTGCAAAGATAATTGTTTG 60.563 38.462 0.00 5.73 38.71 2.93
5224 5879 3.922240 GGCTGTGTGTGCAAAGATAATTG 59.078 43.478 0.00 0.00 31.54 2.32
5225 5880 3.573538 TGGCTGTGTGTGCAAAGATAATT 59.426 39.130 0.00 0.00 31.54 1.40
5242 5897 2.011947 CACACTATCCACACATGGCTG 58.988 52.381 0.00 0.00 46.80 4.85
5263 6306 0.109132 GCGAAAATTCAGCCCCACAG 60.109 55.000 0.00 0.00 0.00 3.66
5315 6361 4.633565 CCATTAGAGTTGCTCTTTGAGTCC 59.366 45.833 3.87 0.00 41.50 3.85
5316 6362 4.633565 CCCATTAGAGTTGCTCTTTGAGTC 59.366 45.833 3.87 0.00 41.50 3.36
5317 6363 4.566488 CCCCATTAGAGTTGCTCTTTGAGT 60.566 45.833 3.87 0.00 41.50 3.41
5318 6364 3.944015 CCCCATTAGAGTTGCTCTTTGAG 59.056 47.826 3.87 0.00 41.50 3.02
5319 6365 3.873801 GCCCCATTAGAGTTGCTCTTTGA 60.874 47.826 3.87 0.00 41.50 2.69
5320 6366 2.424956 GCCCCATTAGAGTTGCTCTTTG 59.575 50.000 3.87 3.55 41.50 2.77
5321 6367 2.728007 GCCCCATTAGAGTTGCTCTTT 58.272 47.619 3.87 0.00 41.50 2.52
5323 6369 0.179000 CGCCCCATTAGAGTTGCTCT 59.821 55.000 4.02 4.02 43.83 4.09
5324 6370 0.178068 TCGCCCCATTAGAGTTGCTC 59.822 55.000 0.00 0.00 0.00 4.26
5325 6371 0.839946 ATCGCCCCATTAGAGTTGCT 59.160 50.000 0.00 0.00 0.00 3.91
5326 6372 1.230324 GATCGCCCCATTAGAGTTGC 58.770 55.000 0.00 0.00 0.00 4.17
5327 6373 1.140852 TGGATCGCCCCATTAGAGTTG 59.859 52.381 0.00 0.00 0.00 3.16
5328 6374 1.507140 TGGATCGCCCCATTAGAGTT 58.493 50.000 0.00 0.00 0.00 3.01
5329 6375 1.734655 ATGGATCGCCCCATTAGAGT 58.265 50.000 3.02 0.00 44.11 3.24
5336 6382 1.153249 GACGAAATGGATCGCCCCA 60.153 57.895 0.00 0.00 46.51 4.96
5337 6383 1.146263 AGACGAAATGGATCGCCCC 59.854 57.895 0.00 0.00 46.51 5.80
5338 6384 1.776034 GCAGACGAAATGGATCGCCC 61.776 60.000 0.00 0.00 46.51 6.13
5339 6385 1.643832 GCAGACGAAATGGATCGCC 59.356 57.895 0.00 0.00 46.51 5.54
5340 6386 1.643832 GGCAGACGAAATGGATCGC 59.356 57.895 0.00 0.00 46.51 4.58
5371 6417 3.652000 TTTTTGTCCGCGCCGACC 61.652 61.111 23.06 8.48 31.35 4.79
5385 6431 2.561037 CCGCGTTGGGCCTCTTTTT 61.561 57.895 4.92 0.00 38.94 1.94
5386 6432 2.983592 CCGCGTTGGGCCTCTTTT 60.984 61.111 4.92 0.00 38.94 2.27
5396 6442 3.661025 GATTTGGGTCGCCGCGTTG 62.661 63.158 13.39 0.00 0.00 4.10
5397 6443 3.428282 GATTTGGGTCGCCGCGTT 61.428 61.111 13.39 0.00 0.00 4.84
5400 6446 1.944234 ATTTGGATTTGGGTCGCCGC 61.944 55.000 0.00 0.00 0.00 6.53
5401 6447 0.179140 CATTTGGATTTGGGTCGCCG 60.179 55.000 0.00 0.00 0.00 6.46
5402 6448 0.175531 CCATTTGGATTTGGGTCGCC 59.824 55.000 0.00 0.00 37.39 5.54
5403 6449 1.134946 CTCCATTTGGATTTGGGTCGC 59.865 52.381 0.00 0.00 44.46 5.19
5404 6450 2.423538 GACTCCATTTGGATTTGGGTCG 59.576 50.000 0.00 0.00 44.46 4.79
5405 6451 2.760650 GGACTCCATTTGGATTTGGGTC 59.239 50.000 0.00 3.86 44.46 4.46
5406 6452 2.820178 GGACTCCATTTGGATTTGGGT 58.180 47.619 0.00 0.00 44.46 4.51
5407 6453 1.750778 CGGACTCCATTTGGATTTGGG 59.249 52.381 0.00 0.00 44.46 4.12
5408 6454 2.722094 TCGGACTCCATTTGGATTTGG 58.278 47.619 0.00 0.00 44.46 3.28
5409 6455 4.496341 CGAATCGGACTCCATTTGGATTTG 60.496 45.833 0.00 0.00 44.46 2.32
5410 6456 3.627577 CGAATCGGACTCCATTTGGATTT 59.372 43.478 0.00 0.00 44.46 2.17
5411 6457 3.206150 CGAATCGGACTCCATTTGGATT 58.794 45.455 0.00 0.00 44.46 3.01
5412 6458 2.838736 CGAATCGGACTCCATTTGGAT 58.161 47.619 0.00 0.00 44.46 3.41
5413 6459 1.742411 GCGAATCGGACTCCATTTGGA 60.742 52.381 4.35 0.00 43.08 3.53
5414 6460 0.657840 GCGAATCGGACTCCATTTGG 59.342 55.000 4.35 0.00 0.00 3.28
5415 6461 0.301687 CGCGAATCGGACTCCATTTG 59.698 55.000 0.00 0.59 33.78 2.32
5416 6462 0.108329 ACGCGAATCGGACTCCATTT 60.108 50.000 15.93 0.00 43.86 2.32
5417 6463 0.527817 GACGCGAATCGGACTCCATT 60.528 55.000 15.93 0.00 43.86 3.16
5418 6464 1.065928 GACGCGAATCGGACTCCAT 59.934 57.895 15.93 0.00 43.86 3.41
5419 6465 2.488355 GACGCGAATCGGACTCCA 59.512 61.111 15.93 0.00 43.86 3.86
5420 6466 2.278661 GGACGCGAATCGGACTCC 60.279 66.667 15.93 1.89 43.86 3.85
5421 6467 2.651232 CGGACGCGAATCGGACTC 60.651 66.667 15.93 0.00 43.86 3.36
5422 6468 3.109612 CTCGGACGCGAATCGGACT 62.110 63.158 15.93 0.00 43.86 3.85
5423 6469 2.651232 CTCGGACGCGAATCGGAC 60.651 66.667 15.93 0.00 43.86 4.79
5424 6470 4.547905 GCTCGGACGCGAATCGGA 62.548 66.667 15.93 10.05 43.86 4.55
5427 6473 4.547905 TCGGCTCGGACGCGAATC 62.548 66.667 15.93 0.00 32.07 2.52
5428 6474 4.849329 GTCGGCTCGGACGCGAAT 62.849 66.667 15.93 0.00 32.07 3.34
5434 6480 2.813908 AAATGCGTCGGCTCGGAC 60.814 61.111 0.00 0.00 40.82 4.79
5435 6481 2.813474 CAAATGCGTCGGCTCGGA 60.813 61.111 0.00 0.00 40.82 4.55
5436 6482 3.118454 ACAAATGCGTCGGCTCGG 61.118 61.111 0.00 0.00 40.82 4.63
5437 6483 2.096406 CACAAATGCGTCGGCTCG 59.904 61.111 0.00 0.00 40.82 5.03
5438 6484 2.480555 CCACAAATGCGTCGGCTC 59.519 61.111 0.00 0.00 40.82 4.70
5439 6485 3.737172 GCCACAAATGCGTCGGCT 61.737 61.111 0.00 0.00 39.73 5.52
5440 6486 4.776647 GGCCACAAATGCGTCGGC 62.777 66.667 0.00 0.00 42.21 5.54
5441 6487 4.114997 GGGCCACAAATGCGTCGG 62.115 66.667 4.39 0.00 0.00 4.79
5442 6488 2.413437 TTTGGGCCACAAATGCGTCG 62.413 55.000 5.23 0.00 43.81 5.12
5443 6489 1.365633 TTTGGGCCACAAATGCGTC 59.634 52.632 5.23 0.00 43.81 5.19
5444 6490 3.543537 TTTGGGCCACAAATGCGT 58.456 50.000 5.23 0.00 43.81 5.24
5450 6496 4.766970 CGCAAATTTGGGCCACAA 57.233 50.000 20.60 4.48 37.28 3.33
5456 6502 2.403132 TTTGGGGGCGCAAATTTGGG 62.403 55.000 26.18 26.18 43.22 4.12
5457 6503 0.322366 ATTTGGGGGCGCAAATTTGG 60.322 50.000 19.47 10.66 0.00 3.28
5458 6504 0.803740 CATTTGGGGGCGCAAATTTG 59.196 50.000 14.03 14.03 0.00 2.32
5459 6505 0.959867 GCATTTGGGGGCGCAAATTT 60.960 50.000 10.83 0.00 0.00 1.82
5460 6506 1.377072 GCATTTGGGGGCGCAAATT 60.377 52.632 10.83 0.00 0.00 1.82
5461 6507 2.268600 GCATTTGGGGGCGCAAAT 59.731 55.556 10.83 3.32 0.00 2.32
5507 6553 3.112709 GACACCGAGAAGGCACGC 61.113 66.667 0.00 0.00 46.52 5.34
5508 6554 2.432628 GGACACCGAGAAGGCACG 60.433 66.667 0.00 0.00 46.52 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.