Multiple sequence alignment - TraesCS3D01G074600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G074600 chr3D 100.000 5679 0 0 1 5679 35820470 35814792 0.000000e+00 10488.0
1 TraesCS3D01G074600 chr3D 93.168 161 7 2 3579 3738 567061981 567061824 3.420000e-57 233.0
2 TraesCS3D01G074600 chrUn 96.041 1743 60 5 1448 3189 39259785 39261519 0.000000e+00 2828.0
3 TraesCS3D01G074600 chrUn 91.278 1330 68 20 3848 5162 39262269 39263565 0.000000e+00 1770.0
4 TraesCS3D01G074600 chrUn 96.853 858 26 1 469 1325 39258930 39259787 0.000000e+00 1434.0
5 TraesCS3D01G074600 chrUn 92.593 675 36 9 3142 3812 39261517 39262181 0.000000e+00 957.0
6 TraesCS3D01G074600 chrUn 92.363 419 30 2 1 419 39258516 39258932 3.790000e-166 595.0
7 TraesCS3D01G074600 chr3A 94.914 1750 64 12 1448 3189 46716768 46715036 0.000000e+00 2715.0
8 TraesCS3D01G074600 chr3A 92.980 1339 81 8 1 1328 46718099 46716763 0.000000e+00 1940.0
9 TraesCS3D01G074600 chr3A 90.756 1244 81 16 3825 5047 46714311 46713081 0.000000e+00 1629.0
10 TraesCS3D01G074600 chr3A 91.779 596 34 6 3142 3737 46715038 46714458 0.000000e+00 815.0
11 TraesCS3D01G074600 chr3B 90.092 545 25 11 4679 5217 11855359 11855880 0.000000e+00 680.0
12 TraesCS3D01G074600 chr3B 95.652 138 4 2 1324 1459 507130994 507130857 2.660000e-53 220.0
13 TraesCS3D01G074600 chr3B 91.071 56 4 1 5357 5411 670974626 670974571 2.190000e-09 75.0
14 TraesCS3D01G074600 chr3B 91.071 56 4 1 5354 5408 743087019 743087074 2.190000e-09 75.0
15 TraesCS3D01G074600 chr6B 89.194 546 29 14 4679 5217 349726849 349727371 0.000000e+00 654.0
16 TraesCS3D01G074600 chr6B 91.667 336 16 6 4679 5008 402301631 402301302 6.710000e-124 455.0
17 TraesCS3D01G074600 chr6B 91.071 56 4 1 5354 5408 349727374 349727429 2.190000e-09 75.0
18 TraesCS3D01G074600 chr2B 89.031 392 23 8 4828 5217 51046352 51046725 8.620000e-128 468.0
19 TraesCS3D01G074600 chr2B 91.071 56 4 1 5354 5408 51046728 51046783 2.190000e-09 75.0
20 TraesCS3D01G074600 chr6D 98.450 129 2 0 1323 1451 126108389 126108261 1.590000e-55 228.0
21 TraesCS3D01G074600 chr5D 98.450 129 2 0 1323 1451 183633957 183634085 1.590000e-55 228.0
22 TraesCS3D01G074600 chr4D 98.450 129 2 0 1323 1451 391290424 391290296 1.590000e-55 228.0
23 TraesCS3D01G074600 chr4D 97.037 135 3 1 1317 1450 614519 614653 5.730000e-55 226.0
24 TraesCS3D01G074600 chr4D 95.161 62 3 0 5281 5342 462833067 462833128 1.300000e-16 99.0
25 TraesCS3D01G074600 chr1D 98.450 129 2 0 1323 1451 127143403 127143275 1.590000e-55 228.0
26 TraesCS3D01G074600 chr1D 90.826 109 8 1 4679 4787 2633749 2633855 1.650000e-30 145.0
27 TraesCS3D01G074600 chr5B 96.324 136 5 0 1322 1457 327750366 327750231 2.060000e-54 224.0
28 TraesCS3D01G074600 chr5B 90.062 161 12 2 3579 3738 532727117 532726960 7.460000e-49 206.0
29 TraesCS3D01G074600 chr1B 97.692 130 3 0 1323 1452 453762755 453762626 2.060000e-54 224.0
30 TraesCS3D01G074600 chr1B 93.506 77 4 1 5266 5342 323977039 323976964 4.650000e-21 113.0
31 TraesCS3D01G074600 chr7D 95.620 137 6 0 1316 1452 584458313 584458449 2.660000e-53 220.0
32 TraesCS3D01G074600 chr7A 92.258 155 8 2 3576 3729 22334608 22334759 3.450000e-52 217.0
33 TraesCS3D01G074600 chr2A 86.250 160 11 3 3580 3738 761780583 761780434 4.550000e-36 163.0
34 TraesCS3D01G074600 chr7B 92.661 109 6 1 4679 4787 31401314 31401208 7.620000e-34 156.0
35 TraesCS3D01G074600 chr7B 85.714 84 12 0 5134 5217 669653418 669653501 7.840000e-14 89.8
36 TraesCS3D01G074600 chr2D 92.661 109 6 1 4679 4787 464739288 464739394 7.620000e-34 156.0
37 TraesCS3D01G074600 chr4B 86.905 84 11 0 5134 5217 631236420 631236503 1.680000e-15 95.3
38 TraesCS3D01G074600 chr4B 89.286 56 5 1 5354 5408 631236506 631236561 1.020000e-07 69.4
39 TraesCS3D01G074600 chr4A 93.103 58 4 0 5285 5342 6877574 6877631 1.010000e-12 86.1
40 TraesCS3D01G074600 chr4A 93.103 58 4 0 5285 5342 6883854 6883911 1.010000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G074600 chr3D 35814792 35820470 5678 True 10488.00 10488 100.00000 1 5679 1 chr3D.!!$R1 5678
1 TraesCS3D01G074600 chrUn 39258516 39263565 5049 False 1516.80 2828 93.82560 1 5162 5 chrUn.!!$F1 5161
2 TraesCS3D01G074600 chr3A 46713081 46718099 5018 True 1774.75 2715 92.60725 1 5047 4 chr3A.!!$R1 5046
3 TraesCS3D01G074600 chr3B 11855359 11855880 521 False 680.00 680 90.09200 4679 5217 1 chr3B.!!$F1 538
4 TraesCS3D01G074600 chr6B 349726849 349727429 580 False 364.50 654 90.13250 4679 5408 2 chr6B.!!$F1 729

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
804 811 1.750399 CCCTGCCGATCTTTGTGGG 60.750 63.158 0.0 0.0 0.00 4.61 F
1339 1350 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.0 0.0 0.00 4.12 F
1340 1351 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.0 0.0 0.00 3.28 F
1341 1352 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.0 0.0 0.00 2.44 F
1344 1355 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.0 0.0 0.00 2.17 F
3347 3411 0.037303 CAACAGGAGCTGACCCATGT 59.963 55.000 0.0 0.0 35.18 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1637 1654 0.534873 TGTAGGCGCATAAGCTGTCA 59.465 50.000 10.83 0.0 39.10 3.58 R
3332 3396 1.007721 AGAGTACATGGGTCAGCTCCT 59.992 52.381 0.00 0.0 0.00 3.69 R
3341 3405 4.223923 AGAAGACCAAGAAGAGTACATGGG 59.776 45.833 0.00 0.0 35.44 4.00 R
3347 3411 4.955811 TTGCAGAAGACCAAGAAGAGTA 57.044 40.909 0.00 0.0 0.00 2.59 R
3432 3496 1.597742 TCTGAAGGTTGAGCAGTTGC 58.402 50.000 0.00 0.0 42.49 4.17 R
5346 5508 0.177836 CATGGTCCTGATGCCGTGTA 59.822 55.000 0.00 0.0 37.09 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.251600 CTGCCTCCACAGTTTCTGC 58.748 57.895 0.00 0.00 34.37 4.26
85 86 6.343716 AGTGAATCAGCCTAGTGATGATAG 57.656 41.667 10.94 0.00 37.24 2.08
145 146 6.997239 TGATTTCAGAGTCTCCATTGATTG 57.003 37.500 0.00 0.00 0.00 2.67
162 163 5.452078 TGATTGGTACTTCTTTTTGCCTG 57.548 39.130 0.00 0.00 0.00 4.85
164 165 5.774690 TGATTGGTACTTCTTTTTGCCTGAT 59.225 36.000 0.00 0.00 0.00 2.90
184 185 6.404734 CCTGATCAAGGGCATTGTTTAGTAAC 60.405 42.308 12.03 0.00 43.15 2.50
185 186 5.123186 TGATCAAGGGCATTGTTTAGTAACG 59.877 40.000 12.03 0.00 40.05 3.18
189 190 5.116069 AGGGCATTGTTTAGTAACGTTTG 57.884 39.130 5.91 0.00 37.06 2.93
229 230 4.707030 TTGAGTCATCACAAATGGATGC 57.293 40.909 0.00 0.00 41.46 3.91
385 387 2.197283 AGCTTTCTCTGCCTTCTTGG 57.803 50.000 0.00 0.00 39.35 3.61
408 414 2.203394 CCTGTTGGCTGGCTGTGT 60.203 61.111 2.00 0.00 0.00 3.72
425 431 2.946329 TGTGTATGTGCTTTCACGGTTT 59.054 40.909 0.00 0.00 46.01 3.27
433 439 4.817464 TGTGCTTTCACGGTTTAAGTATGT 59.183 37.500 0.00 0.00 46.01 2.29
443 449 4.014406 GGTTTAAGTATGTTGTCCCAGGG 58.986 47.826 0.00 0.00 0.00 4.45
444 450 4.263594 GGTTTAAGTATGTTGTCCCAGGGA 60.264 45.833 3.01 3.01 0.00 4.20
447 453 2.188817 AGTATGTTGTCCCAGGGAGAC 58.811 52.381 9.15 11.74 29.39 3.36
458 464 3.115390 CCCAGGGAGACAGAAGGAAATA 58.885 50.000 0.00 0.00 0.00 1.40
518 524 7.483307 ACTACTATAGTTTTATTTCGCGGTCA 58.517 34.615 11.40 0.00 34.86 4.02
582 588 7.441458 AGGATACAGATAGGCGTTGTTTAATTC 59.559 37.037 0.00 0.00 41.41 2.17
613 619 1.880027 AGAAATGGTTCGGTTGCAGTC 59.120 47.619 0.00 0.00 38.90 3.51
689 696 8.766994 TCATTGATCCCCCTTTTTAATCTAAG 57.233 34.615 0.00 0.00 0.00 2.18
696 703 5.719563 CCCCCTTTTTAATCTAAGAAAGGCA 59.280 40.000 8.12 0.00 44.24 4.75
700 707 7.814587 CCCTTTTTAATCTAAGAAAGGCACAAG 59.185 37.037 8.12 0.00 44.24 3.16
774 781 8.000780 ACTTTATGCCTTTCCTCATGATTAAC 57.999 34.615 0.00 0.00 0.00 2.01
804 811 1.750399 CCCTGCCGATCTTTGTGGG 60.750 63.158 0.00 0.00 0.00 4.61
904 911 5.656416 TGATCTGTTTGGAGTTGGAAAAGTT 59.344 36.000 0.00 0.00 0.00 2.66
905 912 5.323371 TCTGTTTGGAGTTGGAAAAGTTG 57.677 39.130 0.00 0.00 0.00 3.16
915 922 6.327279 AGTTGGAAAAGTTGTTAGGTATGC 57.673 37.500 0.00 0.00 0.00 3.14
1185 1196 3.526931 GGTCCACGAAGAAGATGATCA 57.473 47.619 0.00 0.00 0.00 2.92
1200 1211 7.664731 AGAAGATGATCACTGACAAGAAACATT 59.335 33.333 0.00 0.00 0.00 2.71
1210 1221 7.645340 CACTGACAAGAAACATTGTAAGGAAAG 59.355 37.037 8.45 0.00 43.42 2.62
1241 1252 3.317149 GTGGTAAGTTGGGGTTGTTCTTC 59.683 47.826 0.00 0.00 0.00 2.87
1324 1335 4.071423 CAGGTGTGGTTGTCATTCATGTA 58.929 43.478 0.00 0.00 0.00 2.29
1325 1336 4.072131 AGGTGTGGTTGTCATTCATGTAC 58.928 43.478 0.00 0.00 0.00 2.90
1326 1337 4.072131 GGTGTGGTTGTCATTCATGTACT 58.928 43.478 0.00 0.00 0.00 2.73
1327 1338 4.154195 GGTGTGGTTGTCATTCATGTACTC 59.846 45.833 0.00 0.00 0.00 2.59
1328 1339 4.154195 GTGTGGTTGTCATTCATGTACTCC 59.846 45.833 0.00 0.00 0.00 3.85
1329 1340 3.689649 GTGGTTGTCATTCATGTACTCCC 59.310 47.826 0.00 0.00 0.00 4.30
1330 1341 3.587061 TGGTTGTCATTCATGTACTCCCT 59.413 43.478 0.00 0.00 0.00 4.20
1331 1342 4.192317 GGTTGTCATTCATGTACTCCCTC 58.808 47.826 0.00 0.00 0.00 4.30
1332 1343 4.192317 GTTGTCATTCATGTACTCCCTCC 58.808 47.826 0.00 0.00 0.00 4.30
1333 1344 2.430694 TGTCATTCATGTACTCCCTCCG 59.569 50.000 0.00 0.00 0.00 4.63
1334 1345 2.431057 GTCATTCATGTACTCCCTCCGT 59.569 50.000 0.00 0.00 0.00 4.69
1335 1346 2.693591 TCATTCATGTACTCCCTCCGTC 59.306 50.000 0.00 0.00 0.00 4.79
1336 1347 1.481871 TTCATGTACTCCCTCCGTCC 58.518 55.000 0.00 0.00 0.00 4.79
1337 1348 0.396695 TCATGTACTCCCTCCGTCCC 60.397 60.000 0.00 0.00 0.00 4.46
1338 1349 0.686441 CATGTACTCCCTCCGTCCCA 60.686 60.000 0.00 0.00 0.00 4.37
1339 1350 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
1340 1351 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
1341 1352 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
1342 1353 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
1343 1354 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
1344 1355 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
1345 1356 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
1346 1357 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
1347 1358 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
1348 1359 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
1349 1360 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
1350 1361 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
1351 1362 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
1352 1363 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
1353 1364 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
1354 1365 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
1355 1366 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
1356 1367 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
1357 1368 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
1358 1369 8.726988 CGTCCCAAAATTCTTGTCTTAGATTTA 58.273 33.333 0.00 0.00 0.00 1.40
1391 1402 8.420374 ACGGATGTATCTAACACTAAAATGTG 57.580 34.615 0.00 0.00 42.09 3.21
1392 1403 8.255206 ACGGATGTATCTAACACTAAAATGTGA 58.745 33.333 1.47 0.00 42.09 3.58
1393 1404 9.093970 CGGATGTATCTAACACTAAAATGTGAA 57.906 33.333 1.47 0.00 42.09 3.18
1405 1416 9.261180 ACACTAAAATGTGAATAGATACATCCG 57.739 33.333 1.47 0.00 40.12 4.18
1406 1417 9.261180 CACTAAAATGTGAATAGATACATCCGT 57.739 33.333 0.00 0.00 40.12 4.69
1424 1435 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
1425 1436 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
1426 1437 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
1427 1438 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
1428 1439 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
1429 1440 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
1437 1448 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
1438 1449 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
1439 1450 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
1440 1451 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
1441 1452 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
1442 1453 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
1443 1454 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
1444 1455 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
1445 1456 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
1446 1457 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
1447 1458 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
1448 1459 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
1455 1466 1.413077 GGGACGGAGGGAGTATTCAAG 59.587 57.143 0.00 0.00 0.00 3.02
1471 1482 9.841880 GAGTATTCAAGTACTTTGATTTTTCCC 57.158 33.333 5.07 0.00 44.90 3.97
1472 1483 8.512138 AGTATTCAAGTACTTTGATTTTTCCCG 58.488 33.333 5.07 0.00 44.90 5.14
1585 1596 6.709397 GGGAAGTTACTGTTTAGCACTTAGTT 59.291 38.462 0.00 0.00 33.23 2.24
1635 1652 9.838339 CCTTGACCTGAAATATCTACAAGTATT 57.162 33.333 0.00 0.00 33.91 1.89
1827 1844 5.163280 CCAATTGCCCACCTTGATTATCAAT 60.163 40.000 8.17 0.00 35.59 2.57
1856 1873 8.669243 CCAAAGTTCTCTTGATACTTGAATACC 58.331 37.037 0.00 0.00 32.76 2.73
1874 1891 8.319057 TGAATACCAGTACTGATATCCTTTGT 57.681 34.615 24.68 11.96 0.00 2.83
1933 1950 3.973657 TCGTCCTCTGTTTACAGTTCAC 58.026 45.455 9.53 4.42 44.12 3.18
2028 2045 3.030668 TGTGTCAGCATCTAGTGTGTG 57.969 47.619 0.00 0.00 0.00 3.82
2055 2072 4.314740 ACTCAAATCGCCTCTACTCATC 57.685 45.455 0.00 0.00 0.00 2.92
2062 2079 3.388308 TCGCCTCTACTCATCGTACTAC 58.612 50.000 0.00 0.00 0.00 2.73
2076 2095 8.953368 TCATCGTACTACTACATCTGAACTTA 57.047 34.615 0.00 0.00 0.00 2.24
2183 2202 5.367945 ACAAGTACTTCTGTCCTCCAAAA 57.632 39.130 4.77 0.00 0.00 2.44
2191 2210 3.334691 TCTGTCCTCCAAAATACTTGCG 58.665 45.455 0.00 0.00 0.00 4.85
2834 2853 2.962859 AGCAGTGAATCCAAAAGGGTT 58.037 42.857 0.00 0.00 38.11 4.11
2837 2856 4.079253 GCAGTGAATCCAAAAGGGTTCTA 58.921 43.478 8.79 0.00 38.11 2.10
2884 2903 1.077265 CTTTGGATGGCCCTGGTGT 59.923 57.895 0.00 0.00 35.38 4.16
2996 3015 1.067295 TGGCACCAGAAGTTCCAGAT 58.933 50.000 0.00 0.00 36.80 2.90
3162 3223 5.350504 TGCTCCTTTATCTTCTTCAGAGG 57.649 43.478 0.00 0.00 33.87 3.69
3184 3245 4.821805 GGTGGTTGATGTTTCAGAAGAAGA 59.178 41.667 0.00 0.00 34.71 2.87
3185 3246 5.299279 GGTGGTTGATGTTTCAGAAGAAGAA 59.701 40.000 0.00 0.00 34.71 2.52
3186 3247 6.433766 GTGGTTGATGTTTCAGAAGAAGAAG 58.566 40.000 0.00 0.00 34.71 2.85
3196 3257 3.562973 TCAGAAGAAGAAGCTGCAACTTG 59.437 43.478 7.18 0.00 0.00 3.16
3281 3342 3.999663 CTGAAGTTGACATCCCAGAAGAC 59.000 47.826 0.00 0.00 0.00 3.01
3332 3396 8.797350 ATGATGATCTTATTCACTTGTCAACA 57.203 30.769 0.00 0.00 0.00 3.33
3341 3405 1.869767 CACTTGTCAACAGGAGCTGAC 59.130 52.381 0.00 0.00 40.44 3.51
3347 3411 0.037303 CAACAGGAGCTGACCCATGT 59.963 55.000 0.00 0.00 35.18 3.21
3357 3421 3.055530 AGCTGACCCATGTACTCTTCTTG 60.056 47.826 0.00 0.00 0.00 3.02
3415 3479 2.105477 AGCAAGTGACACCTTCTGATGT 59.895 45.455 0.84 0.00 0.00 3.06
3431 3495 7.309012 CCTTCTGATGTTCAAATTCAGTCATGT 60.309 37.037 0.00 0.00 38.39 3.21
3432 3496 6.905578 TCTGATGTTCAAATTCAGTCATGTG 58.094 36.000 0.00 0.00 38.39 3.21
3433 3497 5.463286 TGATGTTCAAATTCAGTCATGTGC 58.537 37.500 0.00 0.00 0.00 4.57
3434 3498 4.915158 TGTTCAAATTCAGTCATGTGCA 57.085 36.364 0.00 0.00 0.00 4.57
3437 3501 5.163530 TGTTCAAATTCAGTCATGTGCAACT 60.164 36.000 0.00 0.00 38.04 3.16
3438 3502 4.862350 TCAAATTCAGTCATGTGCAACTG 58.138 39.130 9.55 9.55 43.41 3.16
3439 3503 3.293311 AATTCAGTCATGTGCAACTGC 57.707 42.857 10.77 0.00 42.10 4.40
3440 3504 1.971481 TTCAGTCATGTGCAACTGCT 58.029 45.000 10.77 0.96 42.10 4.24
3458 3522 4.070716 CTGCTCAACCTTCAGAAGACATT 58.929 43.478 12.14 0.46 0.00 2.71
3475 3539 4.217118 AGACATTGACATTGCAGAAGAACC 59.783 41.667 0.00 0.00 0.00 3.62
3476 3540 4.147321 ACATTGACATTGCAGAAGAACCT 58.853 39.130 0.00 0.00 0.00 3.50
3497 3561 6.681777 ACCTGCAATAATTTCTGAAGACAAC 58.318 36.000 0.00 0.00 0.00 3.32
3506 3570 6.814506 ATTTCTGAAGACAACCAGATTCAG 57.185 37.500 7.33 7.33 46.42 3.02
3519 3583 4.639310 ACCAGATTCAGTCATTTGATGCTC 59.361 41.667 0.00 0.00 0.00 4.26
3550 3614 3.258622 GTCAAAGGTACTAGCTGTGTCCT 59.741 47.826 0.00 3.19 38.49 3.85
3672 3736 3.194062 GCTGCTAGTTCAGAGAACCATC 58.806 50.000 6.29 0.00 36.19 3.51
3673 3737 3.368843 GCTGCTAGTTCAGAGAACCATCA 60.369 47.826 6.29 2.01 36.19 3.07
3674 3738 4.682859 GCTGCTAGTTCAGAGAACCATCAT 60.683 45.833 6.29 0.00 36.19 2.45
3738 3803 7.634522 CAGAACCTGCATTAGCTTTCTATAAC 58.365 38.462 0.00 0.00 42.74 1.89
3822 3902 9.638239 TTGCAAAACTTTATTACAGGAATCATC 57.362 29.630 0.00 0.00 0.00 2.92
3836 3973 5.349824 GGAATCATCCAATTTACTCTCGC 57.650 43.478 0.00 0.00 45.79 5.03
3840 3977 6.949352 ATCATCCAATTTACTCTCGCATTT 57.051 33.333 0.00 0.00 0.00 2.32
3842 3979 6.115446 TCATCCAATTTACTCTCGCATTTCT 58.885 36.000 0.00 0.00 0.00 2.52
3846 3983 6.980978 TCCAATTTACTCTCGCATTTCTCTAG 59.019 38.462 0.00 0.00 0.00 2.43
3849 3986 3.708563 ACTCTCGCATTTCTCTAGCTC 57.291 47.619 0.00 0.00 0.00 4.09
3864 4001 7.931015 TCTCTAGCTCCTTATTTTAATCCCA 57.069 36.000 0.00 0.00 0.00 4.37
3865 4002 8.331931 TCTCTAGCTCCTTATTTTAATCCCAA 57.668 34.615 0.00 0.00 0.00 4.12
3869 4006 9.971922 CTAGCTCCTTATTTTAATCCCAATTTG 57.028 33.333 0.00 0.00 0.00 2.32
3870 4007 8.379428 AGCTCCTTATTTTAATCCCAATTTGT 57.621 30.769 0.00 0.00 0.00 2.83
3872 4009 9.098355 GCTCCTTATTTTAATCCCAATTTGTTC 57.902 33.333 0.00 0.00 0.00 3.18
3884 4021 8.750515 ATCCCAATTTGTTCTTCATTTGTTTT 57.249 26.923 0.00 0.00 0.00 2.43
3895 4032 6.272318 TCTTCATTTGTTTTGCAGATTCGTT 58.728 32.000 0.00 0.00 0.00 3.85
3898 4035 2.132740 TGTTTTGCAGATTCGTTGCC 57.867 45.000 0.00 0.00 40.81 4.52
3899 4036 1.406898 TGTTTTGCAGATTCGTTGCCA 59.593 42.857 0.00 0.00 40.81 4.92
3931 4068 4.074970 ACTGTCCATTCAAGTGAATCACC 58.925 43.478 10.12 0.00 42.41 4.02
3965 4102 2.035576 TGGCACTGATGATGATCTCGAG 59.964 50.000 5.93 5.93 0.00 4.04
3973 4110 5.008980 TGATGATGATCTCGAGTCTAGCAT 58.991 41.667 13.13 13.16 0.00 3.79
3982 4119 4.098055 TCGAGTCTAGCATTTCTGTCAC 57.902 45.455 0.00 0.00 0.00 3.67
3985 4122 4.617067 CGAGTCTAGCATTTCTGTCACACT 60.617 45.833 0.00 0.00 0.00 3.55
3986 4123 4.564041 AGTCTAGCATTTCTGTCACACTG 58.436 43.478 0.00 0.00 0.00 3.66
4002 4139 0.176680 ACTGCCAACTAGCTCATCGG 59.823 55.000 0.00 0.00 0.00 4.18
4006 4143 0.249657 CCAACTAGCTCATCGGCTCC 60.250 60.000 0.00 0.00 42.97 4.70
4019 4159 0.030908 CGGCTCCGGAGAACATACTC 59.969 60.000 35.69 14.09 36.31 2.59
4073 4213 3.123620 GAAGCAGCAGCAGACCCG 61.124 66.667 3.17 0.00 45.49 5.28
4585 4725 2.883253 GCTCCAGCTCGCGAAGTC 60.883 66.667 11.33 2.06 38.21 3.01
4597 4737 2.034179 TCGCGAAGTCTTGAGTCTTGAA 59.966 45.455 6.20 0.00 0.00 2.69
4598 4738 2.989840 CGCGAAGTCTTGAGTCTTGAAT 59.010 45.455 0.00 0.00 0.00 2.57
4599 4739 3.430218 CGCGAAGTCTTGAGTCTTGAATT 59.570 43.478 0.00 0.00 0.00 2.17
4600 4740 4.665142 CGCGAAGTCTTGAGTCTTGAATTG 60.665 45.833 0.00 0.33 0.00 2.32
4647 4787 0.831711 TTCTGCCTGCCCCCTTTTTC 60.832 55.000 0.00 0.00 0.00 2.29
4696 4837 6.813152 TGCTTGATGATGATATACATACACCG 59.187 38.462 0.00 0.00 39.56 4.94
4705 4846 3.536956 ATACATACACCGTGGAAGTGG 57.463 47.619 1.74 0.00 39.63 4.00
4717 4858 0.034089 GGAAGTGGGAGGGGATGTTG 60.034 60.000 0.00 0.00 0.00 3.33
4814 4970 9.553064 GAACATGAGTCAGGAGAATATTGTTAT 57.447 33.333 12.53 0.00 31.41 1.89
4815 4971 9.911788 AACATGAGTCAGGAGAATATTGTTATT 57.088 29.630 12.53 0.00 30.27 1.40
4860 5016 6.262601 GTCATCTAGACTAGTTGCTGAGAAC 58.737 44.000 13.61 4.60 44.09 3.01
4912 5069 5.751243 ACCAGTGTCTGTTTTGAATGTAC 57.249 39.130 0.00 0.00 0.00 2.90
4942 5100 8.624776 ACTTCAGGTAAGAAAAATCTTGAACAG 58.375 33.333 1.47 0.00 38.67 3.16
4982 5141 4.802999 CCTTCTGGTCTTGCTCAAATTTC 58.197 43.478 0.00 0.00 0.00 2.17
5023 5182 8.517062 AGAGATAATTCTTCTTGGTTGATTGG 57.483 34.615 0.00 0.00 30.30 3.16
5024 5183 7.559170 AGAGATAATTCTTCTTGGTTGATTGGG 59.441 37.037 0.00 0.00 30.30 4.12
5025 5184 7.184862 AGATAATTCTTCTTGGTTGATTGGGT 58.815 34.615 0.00 0.00 0.00 4.51
5026 5185 7.675619 AGATAATTCTTCTTGGTTGATTGGGTT 59.324 33.333 0.00 0.00 0.00 4.11
5027 5186 4.935352 TTCTTCTTGGTTGATTGGGTTG 57.065 40.909 0.00 0.00 0.00 3.77
5028 5187 4.177537 TCTTCTTGGTTGATTGGGTTGA 57.822 40.909 0.00 0.00 0.00 3.18
5029 5188 4.739793 TCTTCTTGGTTGATTGGGTTGAT 58.260 39.130 0.00 0.00 0.00 2.57
5030 5189 5.147032 TCTTCTTGGTTGATTGGGTTGATT 58.853 37.500 0.00 0.00 0.00 2.57
5031 5190 4.870123 TCTTGGTTGATTGGGTTGATTG 57.130 40.909 0.00 0.00 0.00 2.67
5040 5199 5.398236 TGATTGGGTTGATTGGGTTCTTTA 58.602 37.500 0.00 0.00 0.00 1.85
5110 5269 0.690762 TGCTTCTCCTTGTGGGGTAC 59.309 55.000 0.00 0.00 34.72 3.34
5111 5270 0.690762 GCTTCTCCTTGTGGGGTACA 59.309 55.000 0.00 0.00 37.56 2.90
5112 5271 1.339151 GCTTCTCCTTGTGGGGTACAG 60.339 57.143 0.00 0.00 41.10 2.74
5113 5272 1.978580 CTTCTCCTTGTGGGGTACAGT 59.021 52.381 0.00 0.00 41.10 3.55
5114 5273 3.170717 CTTCTCCTTGTGGGGTACAGTA 58.829 50.000 0.00 0.00 41.10 2.74
5115 5274 2.532843 TCTCCTTGTGGGGTACAGTAC 58.467 52.381 1.59 1.59 41.10 2.73
5116 5275 1.203994 CTCCTTGTGGGGTACAGTACG 59.796 57.143 4.58 0.00 41.10 3.67
5117 5276 0.971386 CCTTGTGGGGTACAGTACGT 59.029 55.000 4.58 0.00 41.10 3.57
5118 5277 2.170166 CCTTGTGGGGTACAGTACGTA 58.830 52.381 4.58 0.00 41.10 3.57
5177 5339 5.940617 TCATAGAAATGGGTTCATAGTGGG 58.059 41.667 0.00 0.00 38.86 4.61
5183 5345 1.707989 TGGGTTCATAGTGGGCTGAAA 59.292 47.619 0.00 0.00 33.45 2.69
5193 5355 2.361567 GGGCTGAAATGGGGCTTGG 61.362 63.158 0.00 0.00 0.00 3.61
5194 5356 2.361567 GGCTGAAATGGGGCTTGGG 61.362 63.158 0.00 0.00 0.00 4.12
5217 5379 3.388308 CTCTTGAACTGTCTGTCACCAG 58.612 50.000 0.00 0.00 40.25 4.00
5218 5380 2.103094 TCTTGAACTGTCTGTCACCAGG 59.897 50.000 0.00 0.00 39.31 4.45
5219 5381 1.788229 TGAACTGTCTGTCACCAGGA 58.212 50.000 0.00 0.00 39.31 3.86
5229 5391 2.642139 GTCACCAGGACGATACGAAA 57.358 50.000 0.00 0.00 36.65 3.46
5230 5392 2.950433 GTCACCAGGACGATACGAAAA 58.050 47.619 0.00 0.00 36.65 2.29
5231 5393 2.665052 GTCACCAGGACGATACGAAAAC 59.335 50.000 0.00 0.00 36.65 2.43
5232 5394 2.559668 TCACCAGGACGATACGAAAACT 59.440 45.455 0.00 0.00 0.00 2.66
5233 5395 2.921754 CACCAGGACGATACGAAAACTC 59.078 50.000 0.00 0.00 0.00 3.01
5234 5396 2.824341 ACCAGGACGATACGAAAACTCT 59.176 45.455 0.00 0.00 0.00 3.24
5235 5397 4.012374 ACCAGGACGATACGAAAACTCTA 58.988 43.478 0.00 0.00 0.00 2.43
5236 5398 4.096081 ACCAGGACGATACGAAAACTCTAG 59.904 45.833 0.00 0.00 0.00 2.43
5237 5399 4.036352 CAGGACGATACGAAAACTCTAGC 58.964 47.826 0.00 0.00 0.00 3.42
5238 5400 3.066481 AGGACGATACGAAAACTCTAGCC 59.934 47.826 0.00 0.00 0.00 3.93
5239 5401 3.370276 GACGATACGAAAACTCTAGCCC 58.630 50.000 0.00 0.00 0.00 5.19
5240 5402 2.100418 ACGATACGAAAACTCTAGCCCC 59.900 50.000 0.00 0.00 0.00 5.80
5241 5403 2.545322 CGATACGAAAACTCTAGCCCCC 60.545 54.545 0.00 0.00 0.00 5.40
5261 5423 3.116091 CCCCCGAATTTCAGATGGG 57.884 57.895 0.00 0.00 39.69 4.00
5262 5424 0.258774 CCCCCGAATTTCAGATGGGT 59.741 55.000 6.41 0.00 38.23 4.51
5263 5425 1.392589 CCCCGAATTTCAGATGGGTG 58.607 55.000 6.41 0.00 38.23 4.61
5264 5426 1.392589 CCCGAATTTCAGATGGGTGG 58.607 55.000 0.00 0.00 35.05 4.61
5265 5427 1.392589 CCGAATTTCAGATGGGTGGG 58.607 55.000 0.00 0.00 0.00 4.61
5266 5428 1.392589 CGAATTTCAGATGGGTGGGG 58.607 55.000 0.00 0.00 0.00 4.96
5267 5429 1.114627 GAATTTCAGATGGGTGGGGC 58.885 55.000 0.00 0.00 0.00 5.80
5268 5430 0.325577 AATTTCAGATGGGTGGGGCC 60.326 55.000 0.00 0.00 0.00 5.80
5277 5439 4.062032 GGTGGGGCCCTTTCTCCC 62.062 72.222 25.93 9.96 41.87 4.30
5281 5443 2.947217 GGGCCCTTTCTCCCCCTT 60.947 66.667 17.04 0.00 36.50 3.95
5282 5444 2.684104 GGCCCTTTCTCCCCCTTC 59.316 66.667 0.00 0.00 0.00 3.46
5283 5445 1.931180 GGCCCTTTCTCCCCCTTCT 60.931 63.158 0.00 0.00 0.00 2.85
5284 5446 1.610327 GCCCTTTCTCCCCCTTCTC 59.390 63.158 0.00 0.00 0.00 2.87
5285 5447 1.927569 GCCCTTTCTCCCCCTTCTCC 61.928 65.000 0.00 0.00 0.00 3.71
5286 5448 0.550147 CCCTTTCTCCCCCTTCTCCA 60.550 60.000 0.00 0.00 0.00 3.86
5287 5449 1.372501 CCTTTCTCCCCCTTCTCCAA 58.627 55.000 0.00 0.00 0.00 3.53
5288 5450 1.925959 CCTTTCTCCCCCTTCTCCAAT 59.074 52.381 0.00 0.00 0.00 3.16
5289 5451 2.313041 CCTTTCTCCCCCTTCTCCAATT 59.687 50.000 0.00 0.00 0.00 2.32
5290 5452 3.527665 CCTTTCTCCCCCTTCTCCAATTA 59.472 47.826 0.00 0.00 0.00 1.40
5291 5453 4.527944 CTTTCTCCCCCTTCTCCAATTAC 58.472 47.826 0.00 0.00 0.00 1.89
5292 5454 3.214694 TCTCCCCCTTCTCCAATTACA 57.785 47.619 0.00 0.00 0.00 2.41
5293 5455 2.844348 TCTCCCCCTTCTCCAATTACAC 59.156 50.000 0.00 0.00 0.00 2.90
5294 5456 2.846827 CTCCCCCTTCTCCAATTACACT 59.153 50.000 0.00 0.00 0.00 3.55
5295 5457 3.265489 TCCCCCTTCTCCAATTACACTT 58.735 45.455 0.00 0.00 0.00 3.16
5296 5458 4.440808 TCCCCCTTCTCCAATTACACTTA 58.559 43.478 0.00 0.00 0.00 2.24
5297 5459 5.043762 TCCCCCTTCTCCAATTACACTTAT 58.956 41.667 0.00 0.00 0.00 1.73
5298 5460 5.132144 TCCCCCTTCTCCAATTACACTTATC 59.868 44.000 0.00 0.00 0.00 1.75
5299 5461 5.377478 CCCCTTCTCCAATTACACTTATCC 58.623 45.833 0.00 0.00 0.00 2.59
5300 5462 5.104109 CCCCTTCTCCAATTACACTTATCCA 60.104 44.000 0.00 0.00 0.00 3.41
5301 5463 6.410853 CCCCTTCTCCAATTACACTTATCCAT 60.411 42.308 0.00 0.00 0.00 3.41
5302 5464 6.488006 CCCTTCTCCAATTACACTTATCCATG 59.512 42.308 0.00 0.00 0.00 3.66
5303 5465 7.056635 CCTTCTCCAATTACACTTATCCATGT 58.943 38.462 0.00 0.00 0.00 3.21
5304 5466 7.557719 CCTTCTCCAATTACACTTATCCATGTT 59.442 37.037 0.00 0.00 0.00 2.71
5305 5467 7.864108 TCTCCAATTACACTTATCCATGTTG 57.136 36.000 0.00 0.00 0.00 3.33
5306 5468 6.318648 TCTCCAATTACACTTATCCATGTTGC 59.681 38.462 0.00 0.00 0.00 4.17
5307 5469 5.948758 TCCAATTACACTTATCCATGTTGCA 59.051 36.000 0.00 0.00 0.00 4.08
5308 5470 6.095300 TCCAATTACACTTATCCATGTTGCAG 59.905 38.462 0.00 0.00 0.00 4.41
5309 5471 4.963276 TTACACTTATCCATGTTGCAGC 57.037 40.909 0.00 0.00 0.00 5.25
5310 5472 2.094675 ACACTTATCCATGTTGCAGCC 58.905 47.619 0.00 0.00 0.00 4.85
5311 5473 2.291153 ACACTTATCCATGTTGCAGCCT 60.291 45.455 0.00 0.00 0.00 4.58
5312 5474 3.054434 ACACTTATCCATGTTGCAGCCTA 60.054 43.478 0.00 0.00 0.00 3.93
5313 5475 3.313526 CACTTATCCATGTTGCAGCCTAC 59.686 47.826 0.00 0.00 0.00 3.18
5314 5476 2.238942 TATCCATGTTGCAGCCTACG 57.761 50.000 0.00 0.00 0.00 3.51
5315 5477 0.253044 ATCCATGTTGCAGCCTACGT 59.747 50.000 0.00 0.00 0.00 3.57
5316 5478 0.899019 TCCATGTTGCAGCCTACGTA 59.101 50.000 0.00 0.00 0.00 3.57
5317 5479 1.276705 TCCATGTTGCAGCCTACGTAA 59.723 47.619 0.00 0.00 0.00 3.18
5318 5480 2.080693 CCATGTTGCAGCCTACGTAAA 58.919 47.619 0.00 0.00 0.00 2.01
5319 5481 2.486203 CCATGTTGCAGCCTACGTAAAA 59.514 45.455 0.00 0.00 0.00 1.52
5320 5482 3.488489 CATGTTGCAGCCTACGTAAAAC 58.512 45.455 0.00 0.00 0.00 2.43
5321 5483 2.562635 TGTTGCAGCCTACGTAAAACA 58.437 42.857 0.00 0.00 0.00 2.83
5322 5484 2.288458 TGTTGCAGCCTACGTAAAACAC 59.712 45.455 0.00 0.00 0.00 3.32
5337 5499 7.606827 CGTAAAACACGTAGCTTTATTTACG 57.393 36.000 17.11 17.11 45.82 3.18
5343 5505 4.433382 CGTAGCTTTATTTACGTGGAGC 57.567 45.455 0.00 0.00 38.21 4.70
5344 5506 3.861113 CGTAGCTTTATTTACGTGGAGCA 59.139 43.478 0.00 0.00 38.21 4.26
5345 5507 4.506654 CGTAGCTTTATTTACGTGGAGCAT 59.493 41.667 0.00 0.00 38.21 3.79
5346 5508 5.006358 CGTAGCTTTATTTACGTGGAGCATT 59.994 40.000 0.00 0.00 38.21 3.56
5347 5509 6.199531 CGTAGCTTTATTTACGTGGAGCATTA 59.800 38.462 0.00 0.00 38.21 1.90
5348 5510 6.359480 AGCTTTATTTACGTGGAGCATTAC 57.641 37.500 0.00 0.00 32.78 1.89
5349 5511 5.878116 AGCTTTATTTACGTGGAGCATTACA 59.122 36.000 0.00 0.00 32.78 2.41
5350 5512 5.963586 GCTTTATTTACGTGGAGCATTACAC 59.036 40.000 0.00 0.00 0.00 2.90
5354 5516 4.294523 GTGGAGCATTACACGGCA 57.705 55.556 0.00 0.00 0.00 5.69
5355 5517 2.780595 GTGGAGCATTACACGGCAT 58.219 52.632 0.00 0.00 0.00 4.40
5388 5551 0.322456 TCCAGCCCAAACCATCTTCG 60.322 55.000 0.00 0.00 0.00 3.79
5391 5554 0.322546 AGCCCAAACCATCTTCGGAC 60.323 55.000 0.00 0.00 0.00 4.79
5394 5557 0.036765 CCAAACCATCTTCGGACGGA 60.037 55.000 0.00 0.00 30.90 4.69
5408 5571 1.141053 GGACGGATGTGGGCTTCTATT 59.859 52.381 0.00 0.00 0.00 1.73
5409 5572 2.421529 GGACGGATGTGGGCTTCTATTT 60.422 50.000 0.00 0.00 0.00 1.40
5410 5573 2.614057 GACGGATGTGGGCTTCTATTTG 59.386 50.000 0.00 0.00 0.00 2.32
5411 5574 1.949525 CGGATGTGGGCTTCTATTTGG 59.050 52.381 0.00 0.00 0.00 3.28
5412 5575 2.310538 GGATGTGGGCTTCTATTTGGG 58.689 52.381 0.00 0.00 0.00 4.12
5413 5576 2.091885 GGATGTGGGCTTCTATTTGGGA 60.092 50.000 0.00 0.00 0.00 4.37
5414 5577 2.806945 TGTGGGCTTCTATTTGGGAG 57.193 50.000 0.00 0.00 0.00 4.30
5415 5578 1.992557 TGTGGGCTTCTATTTGGGAGT 59.007 47.619 0.00 0.00 0.00 3.85
5416 5579 3.186283 TGTGGGCTTCTATTTGGGAGTA 58.814 45.455 0.00 0.00 0.00 2.59
5417 5580 3.589735 TGTGGGCTTCTATTTGGGAGTAA 59.410 43.478 0.00 0.00 0.00 2.24
5418 5581 4.200092 GTGGGCTTCTATTTGGGAGTAAG 58.800 47.826 0.00 0.00 0.00 2.34
5419 5582 3.202151 TGGGCTTCTATTTGGGAGTAAGG 59.798 47.826 0.00 0.00 0.00 2.69
5420 5583 3.435169 GGGCTTCTATTTGGGAGTAAGGG 60.435 52.174 0.00 0.00 0.00 3.95
5421 5584 3.435169 GGCTTCTATTTGGGAGTAAGGGG 60.435 52.174 0.00 0.00 0.00 4.79
5422 5585 3.435169 GCTTCTATTTGGGAGTAAGGGGG 60.435 52.174 0.00 0.00 0.00 5.40
5423 5586 2.132686 TCTATTTGGGAGTAAGGGGGC 58.867 52.381 0.00 0.00 0.00 5.80
5424 5587 0.841289 TATTTGGGAGTAAGGGGGCG 59.159 55.000 0.00 0.00 0.00 6.13
5425 5588 0.917333 ATTTGGGAGTAAGGGGGCGA 60.917 55.000 0.00 0.00 0.00 5.54
5426 5589 1.135068 TTTGGGAGTAAGGGGGCGAA 61.135 55.000 0.00 0.00 0.00 4.70
5427 5590 1.559065 TTGGGAGTAAGGGGGCGAAG 61.559 60.000 0.00 0.00 0.00 3.79
5441 5604 3.551259 CGAAGCCACACCAAGGTAT 57.449 52.632 0.00 0.00 0.00 2.73
5442 5605 1.369625 CGAAGCCACACCAAGGTATC 58.630 55.000 0.00 0.00 0.00 2.24
5443 5606 1.338674 CGAAGCCACACCAAGGTATCA 60.339 52.381 0.00 0.00 0.00 2.15
5444 5607 2.359900 GAAGCCACACCAAGGTATCAG 58.640 52.381 0.00 0.00 0.00 2.90
5445 5608 1.362224 AGCCACACCAAGGTATCAGT 58.638 50.000 0.00 0.00 0.00 3.41
5446 5609 1.003580 AGCCACACCAAGGTATCAGTG 59.996 52.381 0.00 0.00 36.30 3.66
5447 5610 1.271379 GCCACACCAAGGTATCAGTGT 60.271 52.381 6.67 0.00 43.99 3.55
5448 5611 2.027561 GCCACACCAAGGTATCAGTGTA 60.028 50.000 6.67 0.00 41.35 2.90
5449 5612 3.596214 CCACACCAAGGTATCAGTGTAC 58.404 50.000 6.67 0.00 41.35 2.90
5450 5613 3.007506 CCACACCAAGGTATCAGTGTACA 59.992 47.826 0.00 0.00 41.35 2.90
5451 5614 4.504165 CCACACCAAGGTATCAGTGTACAA 60.504 45.833 0.00 0.00 41.35 2.41
5452 5615 4.690748 CACACCAAGGTATCAGTGTACAAG 59.309 45.833 0.00 0.00 41.35 3.16
5453 5616 4.347000 ACACCAAGGTATCAGTGTACAAGT 59.653 41.667 0.00 0.00 41.48 3.16
5454 5617 4.690748 CACCAAGGTATCAGTGTACAAGTG 59.309 45.833 0.00 0.00 0.00 3.16
5455 5618 4.347000 ACCAAGGTATCAGTGTACAAGTGT 59.653 41.667 0.00 0.00 0.00 3.55
5456 5619 5.541101 ACCAAGGTATCAGTGTACAAGTGTA 59.459 40.000 0.00 0.00 0.00 2.90
5471 5634 5.823353 ACAAGTGTACACCCGTTAATTTTG 58.177 37.500 22.28 17.35 0.00 2.44
5472 5635 5.216648 CAAGTGTACACCCGTTAATTTTGG 58.783 41.667 22.28 0.00 0.00 3.28
5473 5636 3.253921 AGTGTACACCCGTTAATTTTGGC 59.746 43.478 22.28 0.00 0.00 4.52
5474 5637 3.253921 GTGTACACCCGTTAATTTTGGCT 59.746 43.478 15.42 0.00 0.00 4.75
5475 5638 3.502979 TGTACACCCGTTAATTTTGGCTC 59.497 43.478 0.00 0.00 0.00 4.70
5476 5639 2.871453 ACACCCGTTAATTTTGGCTCT 58.129 42.857 0.00 0.00 0.00 4.09
5477 5640 2.817844 ACACCCGTTAATTTTGGCTCTC 59.182 45.455 0.00 0.00 0.00 3.20
5478 5641 2.817258 CACCCGTTAATTTTGGCTCTCA 59.183 45.455 0.00 0.00 0.00 3.27
5479 5642 3.443681 CACCCGTTAATTTTGGCTCTCAT 59.556 43.478 0.00 0.00 0.00 2.90
5480 5643 4.082245 CACCCGTTAATTTTGGCTCTCATT 60.082 41.667 0.00 0.00 0.00 2.57
5481 5644 4.082245 ACCCGTTAATTTTGGCTCTCATTG 60.082 41.667 0.00 0.00 0.00 2.82
5482 5645 4.082245 CCCGTTAATTTTGGCTCTCATTGT 60.082 41.667 0.00 0.00 0.00 2.71
5483 5646 5.124776 CCCGTTAATTTTGGCTCTCATTGTA 59.875 40.000 0.00 0.00 0.00 2.41
5484 5647 6.349777 CCCGTTAATTTTGGCTCTCATTGTAA 60.350 38.462 0.00 0.00 0.00 2.41
5485 5648 6.747280 CCGTTAATTTTGGCTCTCATTGTAAG 59.253 38.462 0.00 0.00 0.00 2.34
5486 5649 7.361713 CCGTTAATTTTGGCTCTCATTGTAAGA 60.362 37.037 0.00 0.00 0.00 2.10
5487 5650 8.020819 CGTTAATTTTGGCTCTCATTGTAAGAA 58.979 33.333 0.00 0.00 0.00 2.52
5488 5651 9.860898 GTTAATTTTGGCTCTCATTGTAAGAAT 57.139 29.630 0.00 0.00 0.00 2.40
5489 5652 9.859427 TTAATTTTGGCTCTCATTGTAAGAATG 57.141 29.630 0.00 0.00 0.00 2.67
5490 5653 6.899393 TTTTGGCTCTCATTGTAAGAATGT 57.101 33.333 0.00 0.00 0.00 2.71
5491 5654 5.885230 TTGGCTCTCATTGTAAGAATGTG 57.115 39.130 0.00 0.00 0.00 3.21
5492 5655 4.910195 TGGCTCTCATTGTAAGAATGTGT 58.090 39.130 0.00 0.00 0.00 3.72
5493 5656 6.048732 TGGCTCTCATTGTAAGAATGTGTA 57.951 37.500 0.00 0.00 0.00 2.90
5494 5657 6.108687 TGGCTCTCATTGTAAGAATGTGTAG 58.891 40.000 0.00 0.00 0.00 2.74
5495 5658 5.007136 GGCTCTCATTGTAAGAATGTGTAGC 59.993 44.000 0.00 0.00 0.00 3.58
5496 5659 5.814705 GCTCTCATTGTAAGAATGTGTAGCT 59.185 40.000 0.00 0.00 30.73 3.32
5497 5660 6.238049 GCTCTCATTGTAAGAATGTGTAGCTG 60.238 42.308 0.00 0.00 30.73 4.24
5498 5661 5.582269 TCTCATTGTAAGAATGTGTAGCTGC 59.418 40.000 0.00 0.00 0.00 5.25
5499 5662 5.244755 TCATTGTAAGAATGTGTAGCTGCA 58.755 37.500 0.00 0.00 0.00 4.41
5500 5663 5.704978 TCATTGTAAGAATGTGTAGCTGCAA 59.295 36.000 5.91 0.00 0.00 4.08
5501 5664 5.611796 TTGTAAGAATGTGTAGCTGCAAG 57.388 39.130 5.91 0.00 0.00 4.01
5520 5683 7.737972 TGCAAGCTTAGTAAAGTATTCAACA 57.262 32.000 0.00 0.00 34.99 3.33
5521 5684 8.335532 TGCAAGCTTAGTAAAGTATTCAACAT 57.664 30.769 0.00 0.00 34.99 2.71
5522 5685 9.443323 TGCAAGCTTAGTAAAGTATTCAACATA 57.557 29.630 0.00 0.00 34.99 2.29
5571 5734 7.537596 AGATAACACTAATCTCCATCTCTGG 57.462 40.000 0.00 0.00 44.64 3.86
5573 5736 5.606348 AACACTAATCTCCATCTCTGGAC 57.394 43.478 0.00 0.00 46.95 4.02
5574 5737 4.614475 ACACTAATCTCCATCTCTGGACA 58.386 43.478 0.00 0.00 46.95 4.02
5575 5738 5.215069 ACACTAATCTCCATCTCTGGACAT 58.785 41.667 0.00 0.00 46.95 3.06
5576 5739 5.304101 ACACTAATCTCCATCTCTGGACATC 59.696 44.000 0.00 0.00 46.95 3.06
5577 5740 4.837860 ACTAATCTCCATCTCTGGACATCC 59.162 45.833 0.00 0.00 46.95 3.51
5578 5741 2.854736 TCTCCATCTCTGGACATCCA 57.145 50.000 0.00 0.00 46.95 3.41
5579 5742 3.341318 TCTCCATCTCTGGACATCCAT 57.659 47.619 0.00 0.00 46.95 3.41
5580 5743 3.662078 TCTCCATCTCTGGACATCCATT 58.338 45.455 0.00 0.00 46.95 3.16
5581 5744 3.645212 TCTCCATCTCTGGACATCCATTC 59.355 47.826 0.00 0.00 46.95 2.67
5582 5745 2.366590 TCCATCTCTGGACATCCATTCG 59.633 50.000 0.00 0.00 46.95 3.34
5583 5746 2.103771 CCATCTCTGGACATCCATTCGT 59.896 50.000 0.00 0.00 46.37 3.85
5584 5747 3.388308 CATCTCTGGACATCCATTCGTC 58.612 50.000 0.00 0.00 46.46 4.20
5593 5756 5.470845 GACATCCATTCGTCCAAAACTAG 57.529 43.478 0.00 0.00 0.00 2.57
5594 5757 3.689649 ACATCCATTCGTCCAAAACTAGC 59.310 43.478 0.00 0.00 0.00 3.42
5595 5758 3.695830 TCCATTCGTCCAAAACTAGCT 57.304 42.857 0.00 0.00 0.00 3.32
5596 5759 3.596214 TCCATTCGTCCAAAACTAGCTC 58.404 45.455 0.00 0.00 0.00 4.09
5597 5760 2.678336 CCATTCGTCCAAAACTAGCTCC 59.322 50.000 0.00 0.00 0.00 4.70
5598 5761 2.074547 TTCGTCCAAAACTAGCTCCG 57.925 50.000 0.00 0.00 0.00 4.63
5599 5762 0.389426 TCGTCCAAAACTAGCTCCGC 60.389 55.000 0.00 0.00 0.00 5.54
5600 5763 1.359459 CGTCCAAAACTAGCTCCGCC 61.359 60.000 0.00 0.00 0.00 6.13
5601 5764 1.025113 GTCCAAAACTAGCTCCGCCC 61.025 60.000 0.00 0.00 0.00 6.13
5602 5765 1.749258 CCAAAACTAGCTCCGCCCC 60.749 63.158 0.00 0.00 0.00 5.80
5603 5766 1.299976 CAAAACTAGCTCCGCCCCT 59.700 57.895 0.00 0.00 0.00 4.79
5604 5767 1.026718 CAAAACTAGCTCCGCCCCTG 61.027 60.000 0.00 0.00 0.00 4.45
5605 5768 2.821679 AAAACTAGCTCCGCCCCTGC 62.822 60.000 0.00 0.00 0.00 4.85
5616 5779 3.813724 CCCCTGCCCCTGCCTTAG 61.814 72.222 0.00 0.00 36.33 2.18
5617 5780 2.692368 CCCTGCCCCTGCCTTAGA 60.692 66.667 0.00 0.00 36.33 2.10
5618 5781 2.750657 CCCTGCCCCTGCCTTAGAG 61.751 68.421 0.00 0.00 36.33 2.43
5619 5782 2.191641 CTGCCCCTGCCTTAGAGC 59.808 66.667 0.00 0.00 36.33 4.09
5620 5783 3.411517 TGCCCCTGCCTTAGAGCC 61.412 66.667 0.00 0.00 36.33 4.70
5621 5784 3.411517 GCCCCTGCCTTAGAGCCA 61.412 66.667 0.00 0.00 0.00 4.75
5622 5785 2.914289 CCCCTGCCTTAGAGCCAG 59.086 66.667 0.00 0.00 0.00 4.85
5623 5786 2.191641 CCCTGCCTTAGAGCCAGC 59.808 66.667 0.00 0.00 0.00 4.85
5624 5787 2.191641 CCTGCCTTAGAGCCAGCC 59.808 66.667 0.00 0.00 0.00 4.85
5625 5788 2.373707 CCTGCCTTAGAGCCAGCCT 61.374 63.158 0.00 0.00 0.00 4.58
5626 5789 1.606531 CTGCCTTAGAGCCAGCCTT 59.393 57.895 0.00 0.00 0.00 4.35
5627 5790 0.463474 CTGCCTTAGAGCCAGCCTTC 60.463 60.000 0.00 0.00 0.00 3.46
5628 5791 1.522580 GCCTTAGAGCCAGCCTTCG 60.523 63.158 0.00 0.00 0.00 3.79
5629 5792 1.144936 CCTTAGAGCCAGCCTTCGG 59.855 63.158 0.00 0.00 0.00 4.30
5630 5793 1.144936 CTTAGAGCCAGCCTTCGGG 59.855 63.158 0.00 0.00 38.37 5.14
5631 5794 1.612442 TTAGAGCCAGCCTTCGGGT 60.612 57.895 0.00 0.00 37.45 5.28
5633 5796 3.394836 GAGCCAGCCTTCGGGTCT 61.395 66.667 0.00 0.00 45.62 3.85
5634 5797 3.378399 GAGCCAGCCTTCGGGTCTC 62.378 68.421 0.00 0.00 45.62 3.36
5635 5798 4.475135 GCCAGCCTTCGGGTCTCC 62.475 72.222 0.00 0.00 37.45 3.71
5636 5799 3.003173 CCAGCCTTCGGGTCTCCA 61.003 66.667 0.00 0.00 37.45 3.86
5637 5800 2.266055 CAGCCTTCGGGTCTCCAC 59.734 66.667 0.00 0.00 37.45 4.02
5638 5801 3.382832 AGCCTTCGGGTCTCCACG 61.383 66.667 0.00 0.00 37.45 4.94
5639 5802 4.452733 GCCTTCGGGTCTCCACGG 62.453 72.222 0.00 0.00 37.45 4.94
5640 5803 4.452733 CCTTCGGGTCTCCACGGC 62.453 72.222 0.00 0.00 0.00 5.68
5641 5804 4.452733 CTTCGGGTCTCCACGGCC 62.453 72.222 0.00 0.00 0.00 6.13
5647 5810 4.754667 GTCTCCACGGCCGGGAAC 62.755 72.222 33.49 24.54 33.11 3.62
5667 5830 4.637771 TCGAGCTCCGATCTCACA 57.362 55.556 8.47 0.00 43.23 3.58
5668 5831 2.398803 TCGAGCTCCGATCTCACAG 58.601 57.895 8.47 0.00 43.23 3.66
5669 5832 1.299014 CGAGCTCCGATCTCACAGC 60.299 63.158 8.47 0.00 41.76 4.40
5670 5833 1.812525 GAGCTCCGATCTCACAGCA 59.187 57.895 0.87 0.00 34.08 4.41
5671 5834 0.388659 GAGCTCCGATCTCACAGCAT 59.611 55.000 0.87 0.00 34.08 3.79
5672 5835 0.388659 AGCTCCGATCTCACAGCATC 59.611 55.000 0.00 0.00 34.08 3.91
5673 5836 0.388659 GCTCCGATCTCACAGCATCT 59.611 55.000 0.00 0.00 0.00 2.90
5674 5837 1.202510 GCTCCGATCTCACAGCATCTT 60.203 52.381 0.00 0.00 0.00 2.40
5675 5838 2.741612 CTCCGATCTCACAGCATCTTC 58.258 52.381 0.00 0.00 0.00 2.87
5676 5839 1.066152 TCCGATCTCACAGCATCTTCG 59.934 52.381 0.00 0.00 0.00 3.79
5677 5840 1.202348 CCGATCTCACAGCATCTTCGT 60.202 52.381 0.00 0.00 0.00 3.85
5678 5841 2.033424 CCGATCTCACAGCATCTTCGTA 59.967 50.000 0.00 0.00 0.00 3.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.442047 AGATCTCCAACTTACAAATCTAAACAG 57.558 33.333 0.00 0.00 0.00 3.16
60 61 5.426689 TCATCACTAGGCTGATTCACTTT 57.573 39.130 0.00 0.00 0.00 2.66
85 86 1.281899 GAATCCGCTGTGCTACTCAC 58.718 55.000 0.00 0.00 45.82 3.51
108 109 2.301870 TGAAATCAACAGCGTAGGGAGT 59.698 45.455 0.00 0.00 0.00 3.85
145 146 5.335976 CCTTGATCAGGCAAAAAGAAGTACC 60.336 44.000 0.00 0.00 35.13 3.34
162 163 5.123344 ACGTTACTAAACAATGCCCTTGATC 59.877 40.000 3.36 0.00 38.29 2.92
164 165 4.391155 ACGTTACTAAACAATGCCCTTGA 58.609 39.130 3.36 0.00 38.29 3.02
217 218 0.527113 TGGAAGCGCATCCATTTGTG 59.473 50.000 29.31 0.00 44.52 3.33
229 230 4.718940 AAGAAAAACCCATATGGAAGCG 57.281 40.909 24.00 8.73 37.39 4.68
236 237 7.069344 CCAGGAGGATTAAGAAAAACCCATAT 58.931 38.462 0.00 0.00 36.89 1.78
237 238 6.431722 CCAGGAGGATTAAGAAAAACCCATA 58.568 40.000 0.00 0.00 36.89 2.74
238 239 5.272402 CCAGGAGGATTAAGAAAAACCCAT 58.728 41.667 0.00 0.00 36.89 4.00
240 241 4.023980 CCCAGGAGGATTAAGAAAAACCC 58.976 47.826 0.00 0.00 38.24 4.11
277 279 5.116180 CACTCCTTTCAGTAACTTGACACA 58.884 41.667 0.00 0.00 0.00 3.72
295 297 2.161211 GCAAGTGATTCTTCTGCACTCC 59.839 50.000 0.00 0.00 41.65 3.85
327 329 1.298859 ACTGTCGCGGAAAATCTGGC 61.299 55.000 6.13 0.00 0.00 4.85
399 405 2.095567 GTGAAAGCACATACACAGCCAG 60.096 50.000 0.00 0.00 44.51 4.85
408 414 6.651643 ACATACTTAAACCGTGAAAGCACATA 59.348 34.615 0.00 0.00 45.41 2.29
425 431 3.773119 GTCTCCCTGGGACAACATACTTA 59.227 47.826 12.53 0.00 38.70 2.24
433 439 1.352083 CTTCTGTCTCCCTGGGACAA 58.648 55.000 12.53 0.00 42.15 3.18
443 449 8.900983 AGAATATTGCTATTTCCTTCTGTCTC 57.099 34.615 0.00 0.00 0.00 3.36
444 450 9.336171 GAAGAATATTGCTATTTCCTTCTGTCT 57.664 33.333 0.00 0.00 31.60 3.41
518 524 9.553064 GTCTGAACCACTAATCAATCATTAGAT 57.447 33.333 8.10 0.00 45.02 1.98
582 588 1.148310 ACCATTTCTGAAGACACGCG 58.852 50.000 3.53 3.53 0.00 6.01
613 619 1.893808 GCACACAGACACCCACCAG 60.894 63.158 0.00 0.00 0.00 4.00
671 678 5.955959 GCCTTTCTTAGATTAAAAAGGGGGA 59.044 40.000 13.45 0.00 45.12 4.81
689 696 1.578206 GAGGGTCGCTTGTGCCTTTC 61.578 60.000 0.00 0.00 35.36 2.62
696 703 3.577415 AGTAACTTAAGAGGGTCGCTTGT 59.423 43.478 10.09 0.00 0.00 3.16
700 707 4.453177 AGAAGTAACTTAAGAGGGTCGC 57.547 45.455 10.09 0.00 0.00 5.19
774 781 1.593265 GGCAGGGCAAATGAAGGTG 59.407 57.895 0.00 0.00 0.00 4.00
804 811 1.000896 ATGGTGCCTGGCCAAGTAC 60.001 57.895 17.53 13.75 39.72 2.73
904 911 4.141801 ACCTATCAAAGCGCATACCTAACA 60.142 41.667 11.47 0.00 0.00 2.41
905 912 4.377897 ACCTATCAAAGCGCATACCTAAC 58.622 43.478 11.47 0.00 0.00 2.34
915 922 6.128282 ACAGTGATTAACAACCTATCAAAGCG 60.128 38.462 0.00 0.00 30.72 4.68
1185 1196 7.556275 TCTTTCCTTACAATGTTTCTTGTCAGT 59.444 33.333 0.00 0.00 39.88 3.41
1200 1211 3.476552 CACCAGTGCTTCTTTCCTTACA 58.523 45.455 0.00 0.00 0.00 2.41
1210 1221 1.880027 CCAACTTACCACCAGTGCTTC 59.120 52.381 0.00 0.00 0.00 3.86
1305 1316 4.154195 GGAGTACATGAATGACAACCACAC 59.846 45.833 0.00 0.00 0.00 3.82
1324 1335 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
1325 1336 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
1326 1337 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
1327 1338 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
1328 1339 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
1329 1340 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
1330 1341 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
1331 1342 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
1332 1343 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
1365 1376 9.524106 CACATTTTAGTGTTAGATACATCCGTA 57.476 33.333 0.00 0.00 39.39 4.02
1366 1377 8.255206 TCACATTTTAGTGTTAGATACATCCGT 58.745 33.333 0.00 0.00 39.39 4.69
1367 1378 8.642908 TCACATTTTAGTGTTAGATACATCCG 57.357 34.615 0.00 0.00 39.39 4.18
1379 1390 9.261180 CGGATGTATCTATTCACATTTTAGTGT 57.739 33.333 0.00 0.00 40.37 3.55
1380 1391 9.261180 ACGGATGTATCTATTCACATTTTAGTG 57.739 33.333 0.00 0.00 40.85 2.74
1398 1409 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
1399 1410 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
1400 1411 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
1401 1412 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
1402 1413 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
1403 1414 8.622157 TCTTGTCTTAGATTTGTCTAGATACGG 58.378 37.037 0.00 0.00 0.00 4.02
1411 1422 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
1412 1423 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
1413 1424 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
1414 1425 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
1415 1426 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
1416 1427 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
1417 1428 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
1418 1429 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
1419 1430 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
1420 1431 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
1421 1432 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
1422 1433 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
1423 1434 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
1424 1435 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
1425 1436 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
1426 1437 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
1427 1438 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
1428 1439 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
1429 1440 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
1430 1441 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
1431 1442 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
1432 1443 1.835531 GAATACTCCCTCCGTCCCAAA 59.164 52.381 0.00 0.00 0.00 3.28
1433 1444 1.273381 TGAATACTCCCTCCGTCCCAA 60.273 52.381 0.00 0.00 0.00 4.12
1434 1445 0.337082 TGAATACTCCCTCCGTCCCA 59.663 55.000 0.00 0.00 0.00 4.37
1435 1446 1.413077 CTTGAATACTCCCTCCGTCCC 59.587 57.143 0.00 0.00 0.00 4.46
1436 1447 2.108970 ACTTGAATACTCCCTCCGTCC 58.891 52.381 0.00 0.00 0.00 4.79
1437 1448 3.952967 AGTACTTGAATACTCCCTCCGTC 59.047 47.826 0.00 0.00 28.86 4.79
1438 1449 3.978610 AGTACTTGAATACTCCCTCCGT 58.021 45.455 0.00 0.00 28.86 4.69
1439 1450 5.105473 TCAAAGTACTTGAATACTCCCTCCG 60.105 44.000 9.34 0.00 41.21 4.63
1440 1451 6.295719 TCAAAGTACTTGAATACTCCCTCC 57.704 41.667 9.34 0.00 41.21 4.30
1455 1466 5.688621 GGTCAAACGGGAAAAATCAAAGTAC 59.311 40.000 0.00 0.00 0.00 2.73
1544 1555 6.796705 AACTTCCCAAAGTACGAGTTTATG 57.203 37.500 0.00 0.00 45.07 1.90
1557 1568 5.442391 AGTGCTAAACAGTAACTTCCCAAA 58.558 37.500 0.00 0.00 0.00 3.28
1585 1596 9.310449 AGGTGTAGAGTTCTAATTCTTCAGTAA 57.690 33.333 0.00 0.00 0.00 2.24
1635 1652 2.364002 TGTAGGCGCATAAGCTGTCATA 59.636 45.455 10.83 0.00 39.10 2.15
1636 1653 1.138859 TGTAGGCGCATAAGCTGTCAT 59.861 47.619 10.83 0.00 39.10 3.06
1637 1654 0.534873 TGTAGGCGCATAAGCTGTCA 59.465 50.000 10.83 0.00 39.10 3.58
1827 1844 8.746052 TTCAAGTATCAAGAGAACTTTGGAAA 57.254 30.769 0.00 0.00 33.70 3.13
1856 1873 9.653287 TTAACAGAACAAAGGATATCAGTACTG 57.347 33.333 17.17 17.17 0.00 2.74
1933 1950 9.941664 ATGCATATGATTTTAGTTCTTTTCTCG 57.058 29.630 6.97 0.00 0.00 4.04
2028 2045 7.201145 TGAGTAGAGGCGATTTGAGTTTATAC 58.799 38.462 0.00 0.00 0.00 1.47
2062 2079 7.227512 CCCTTGCCTAAATAAGTTCAGATGTAG 59.772 40.741 0.00 0.00 0.00 2.74
2122 2141 2.734673 GCAGTAGCAGCACGCAGAC 61.735 63.158 0.00 0.00 46.13 3.51
2183 2202 2.169832 AGTTGTCTGTGCGCAAGTAT 57.830 45.000 14.00 0.00 41.68 2.12
2191 2210 4.212214 CAGAGGAAAACTAGTTGTCTGTGC 59.788 45.833 22.31 8.36 0.00 4.57
2834 2853 2.891580 AGTGGACTTCGAGCTTGTTAGA 59.108 45.455 0.00 0.00 0.00 2.10
2837 2856 2.028930 CCTAGTGGACTTCGAGCTTGTT 60.029 50.000 0.00 0.00 34.57 2.83
2996 3015 6.713762 AGTTTCACATCTCCAACAATTTCA 57.286 33.333 0.00 0.00 0.00 2.69
3150 3211 3.648067 ACATCAACCACCTCTGAAGAAGA 59.352 43.478 0.00 0.00 0.00 2.87
3162 3223 6.377327 TTCTTCTTCTGAAACATCAACCAC 57.623 37.500 0.00 0.00 0.00 4.16
3184 3245 3.151554 TCATCATCACAAGTTGCAGCTT 58.848 40.909 10.35 10.35 0.00 3.74
3185 3246 2.786777 TCATCATCACAAGTTGCAGCT 58.213 42.857 1.81 0.00 0.00 4.24
3186 3247 3.377485 AGATCATCATCACAAGTTGCAGC 59.623 43.478 1.81 0.00 0.00 5.25
3196 3257 4.344679 AGAGAACCTCCAGATCATCATCAC 59.655 45.833 0.00 0.00 0.00 3.06
3281 3342 4.158209 TCATCATTACAGGTTGTTGCATGG 59.842 41.667 0.00 0.00 0.00 3.66
3332 3396 1.007721 AGAGTACATGGGTCAGCTCCT 59.992 52.381 0.00 0.00 0.00 3.69
3341 3405 4.223923 AGAAGACCAAGAAGAGTACATGGG 59.776 45.833 0.00 0.00 35.44 4.00
3347 3411 4.955811 TTGCAGAAGACCAAGAAGAGTA 57.044 40.909 0.00 0.00 0.00 2.59
3402 3466 5.829924 ACTGAATTTGAACATCAGAAGGTGT 59.170 36.000 11.92 0.00 42.48 4.16
3415 3479 5.283294 CAGTTGCACATGACTGAATTTGAA 58.717 37.500 10.18 0.00 44.65 2.69
3431 3495 1.134128 TCTGAAGGTTGAGCAGTTGCA 60.134 47.619 6.90 0.00 45.16 4.08
3432 3496 1.597742 TCTGAAGGTTGAGCAGTTGC 58.402 50.000 0.00 0.00 42.49 4.17
3433 3497 3.249559 GTCTTCTGAAGGTTGAGCAGTTG 59.750 47.826 16.83 0.00 0.00 3.16
3434 3498 3.118261 TGTCTTCTGAAGGTTGAGCAGTT 60.118 43.478 16.83 0.00 0.00 3.16
3437 3501 3.777106 ATGTCTTCTGAAGGTTGAGCA 57.223 42.857 16.83 7.57 0.00 4.26
3438 3502 4.067896 TCAATGTCTTCTGAAGGTTGAGC 58.932 43.478 16.83 2.80 0.00 4.26
3439 3503 5.059161 TGTCAATGTCTTCTGAAGGTTGAG 58.941 41.667 22.16 11.30 30.99 3.02
3440 3504 5.034852 TGTCAATGTCTTCTGAAGGTTGA 57.965 39.130 16.83 18.69 0.00 3.18
3475 3539 6.680810 TGGTTGTCTTCAGAAATTATTGCAG 58.319 36.000 0.00 0.00 0.00 4.41
3476 3540 6.489700 TCTGGTTGTCTTCAGAAATTATTGCA 59.510 34.615 0.00 0.00 37.11 4.08
3481 3545 7.939039 ACTGAATCTGGTTGTCTTCAGAAATTA 59.061 33.333 15.76 0.00 44.66 1.40
3485 3549 5.163311 TGACTGAATCTGGTTGTCTTCAGAA 60.163 40.000 15.76 3.61 44.66 3.02
3497 3561 4.882427 AGAGCATCAAATGACTGAATCTGG 59.118 41.667 0.00 0.00 37.82 3.86
3506 3570 6.128090 TGACTGATTTCAGAGCATCAAATGAC 60.128 38.462 14.29 0.00 46.59 3.06
3550 3614 6.202331 TCTTCAGTATCTCTATTGGGGTCAA 58.798 40.000 0.00 0.00 37.28 3.18
3672 3736 3.812262 TCTCACCATCCAGCATTGTATG 58.188 45.455 0.00 0.00 0.00 2.39
3673 3737 4.719026 ATCTCACCATCCAGCATTGTAT 57.281 40.909 0.00 0.00 0.00 2.29
3674 3738 4.508551 AATCTCACCATCCAGCATTGTA 57.491 40.909 0.00 0.00 0.00 2.41
3738 3803 7.666063 AATCCAGGGGAAGATTATTTTGAAG 57.334 36.000 0.00 0.00 34.34 3.02
3753 3818 2.333069 TCTGAGATGCTAATCCAGGGG 58.667 52.381 0.00 0.00 34.45 4.79
3754 3819 4.325119 CATTCTGAGATGCTAATCCAGGG 58.675 47.826 0.00 0.00 34.45 4.45
3808 3888 9.566432 GAGAGTAAATTGGATGATTCCTGTAAT 57.434 33.333 0.00 0.00 43.07 1.89
3813 3893 5.059833 GCGAGAGTAAATTGGATGATTCCT 58.940 41.667 0.00 0.00 43.07 3.36
3814 3894 4.816385 TGCGAGAGTAAATTGGATGATTCC 59.184 41.667 0.00 0.00 42.94 3.01
3815 3895 5.991328 TGCGAGAGTAAATTGGATGATTC 57.009 39.130 0.00 0.00 0.00 2.52
3816 3896 6.949352 AATGCGAGAGTAAATTGGATGATT 57.051 33.333 0.00 0.00 0.00 2.57
3818 3898 6.115446 AGAAATGCGAGAGTAAATTGGATGA 58.885 36.000 0.00 0.00 0.00 2.92
3819 3899 6.259608 AGAGAAATGCGAGAGTAAATTGGATG 59.740 38.462 0.00 0.00 0.00 3.51
3822 3902 6.292596 GCTAGAGAAATGCGAGAGTAAATTGG 60.293 42.308 0.00 0.00 0.00 3.16
3832 3969 3.451141 AAGGAGCTAGAGAAATGCGAG 57.549 47.619 0.00 0.00 0.00 5.03
3834 3971 6.610741 AAAATAAGGAGCTAGAGAAATGCG 57.389 37.500 0.00 0.00 0.00 4.73
3840 3977 7.931015 TGGGATTAAAATAAGGAGCTAGAGA 57.069 36.000 0.00 0.00 0.00 3.10
3842 3979 9.936329 AAATTGGGATTAAAATAAGGAGCTAGA 57.064 29.630 0.00 0.00 0.00 2.43
3846 3983 9.098355 GAACAAATTGGGATTAAAATAAGGAGC 57.902 33.333 0.00 0.00 0.00 4.70
3862 3999 7.249147 TGCAAAACAAATGAAGAACAAATTGG 58.751 30.769 0.00 0.00 35.29 3.16
3864 4001 8.266392 TCTGCAAAACAAATGAAGAACAAATT 57.734 26.923 0.00 0.00 29.29 1.82
3865 4002 7.846644 TCTGCAAAACAAATGAAGAACAAAT 57.153 28.000 0.00 0.00 29.29 2.32
3869 4006 6.198966 ACGAATCTGCAAAACAAATGAAGAAC 59.801 34.615 0.00 0.00 36.08 3.01
3870 4007 6.272318 ACGAATCTGCAAAACAAATGAAGAA 58.728 32.000 0.00 0.00 36.08 2.52
3872 4009 6.349426 CAACGAATCTGCAAAACAAATGAAG 58.651 36.000 0.00 0.00 0.00 3.02
3876 4013 3.494251 GGCAACGAATCTGCAAAACAAAT 59.506 39.130 0.00 0.00 41.78 2.32
3878 4015 2.159184 TGGCAACGAATCTGCAAAACAA 60.159 40.909 0.00 0.00 41.78 2.83
3884 4021 1.236616 CCACTGGCAACGAATCTGCA 61.237 55.000 0.00 0.00 41.78 4.41
3965 4102 3.124297 GCAGTGTGACAGAAATGCTAGAC 59.876 47.826 0.00 0.00 0.00 2.59
3973 4110 2.418368 AGTTGGCAGTGTGACAGAAA 57.582 45.000 0.00 0.00 36.33 2.52
3982 4119 1.284657 CGATGAGCTAGTTGGCAGTG 58.715 55.000 0.00 0.00 34.17 3.66
3985 4122 1.153369 GCCGATGAGCTAGTTGGCA 60.153 57.895 19.49 0.00 43.18 4.92
3986 4123 0.878086 GAGCCGATGAGCTAGTTGGC 60.878 60.000 17.56 17.56 45.15 4.52
4002 4139 3.969995 GGAGTATGTTCTCCGGAGC 57.030 57.895 27.39 14.33 43.42 4.70
4019 4159 0.671781 CGCTGAGGTTGTTCTCCTGG 60.672 60.000 0.00 0.00 35.20 4.45
4073 4213 1.807573 CAGCTCGGCCTCGTTCTTC 60.808 63.158 0.00 0.00 37.69 2.87
4148 4288 4.680237 TTCTGCGAGCACCACCCG 62.680 66.667 0.00 0.00 0.00 5.28
4150 4290 3.050275 GGTTCTGCGAGCACCACC 61.050 66.667 5.46 5.46 0.00 4.61
4151 4291 3.414700 CGGTTCTGCGAGCACCAC 61.415 66.667 0.00 0.00 0.00 4.16
4286 4426 1.730446 GCGTAGTCCTTGTACACGTCC 60.730 57.143 0.00 0.00 35.17 4.79
4488 4628 2.815647 CTCTCGCCGGAAGTTGCC 60.816 66.667 5.05 0.00 0.00 4.52
4597 4737 6.633325 ATGGCTGGCTAACTATCTATCAAT 57.367 37.500 2.00 0.00 0.00 2.57
4598 4738 6.043127 TGAATGGCTGGCTAACTATCTATCAA 59.957 38.462 2.00 0.00 0.00 2.57
4599 4739 5.543790 TGAATGGCTGGCTAACTATCTATCA 59.456 40.000 2.00 0.00 0.00 2.15
4600 4740 6.042638 TGAATGGCTGGCTAACTATCTATC 57.957 41.667 2.00 0.00 0.00 2.08
4688 4829 0.611200 TCCCACTTCCACGGTGTATG 59.389 55.000 7.45 0.00 33.31 2.39
4696 4837 1.208165 ACATCCCCTCCCACTTCCAC 61.208 60.000 0.00 0.00 0.00 4.02
4705 4846 2.435372 TGTAATGCAACATCCCCTCC 57.565 50.000 0.00 0.00 0.00 4.30
4746 4897 4.588528 CCAGGAGGAAAGAACCAAAAATGA 59.411 41.667 0.00 0.00 36.89 2.57
4814 4970 5.529289 ACTCATCCCACTAAGATGACCTAA 58.471 41.667 0.00 0.00 43.96 2.69
4815 4971 5.141182 GACTCATCCCACTAAGATGACCTA 58.859 45.833 0.00 0.00 43.96 3.08
4816 4972 3.964031 GACTCATCCCACTAAGATGACCT 59.036 47.826 0.00 0.00 43.96 3.85
4860 5016 0.325933 TGCTTCCCATGTCCACTCAG 59.674 55.000 0.00 0.00 0.00 3.35
4942 5100 1.067635 AGGCATGAACCGACAAATTGC 60.068 47.619 0.00 0.00 33.69 3.56
4982 5141 3.555527 TCTCTTGCATTCTCCTCATGG 57.444 47.619 0.00 0.00 0.00 3.66
5023 5182 9.586435 CAATAAAGATAAAGAACCCAATCAACC 57.414 33.333 0.00 0.00 0.00 3.77
5029 5188 8.757877 CCCAATCAATAAAGATAAAGAACCCAA 58.242 33.333 0.00 0.00 0.00 4.12
5030 5189 7.898636 ACCCAATCAATAAAGATAAAGAACCCA 59.101 33.333 0.00 0.00 0.00 4.51
5031 5190 8.306313 ACCCAATCAATAAAGATAAAGAACCC 57.694 34.615 0.00 0.00 0.00 4.11
5040 5199 8.655935 AGAACAAGAACCCAATCAATAAAGAT 57.344 30.769 0.00 0.00 0.00 2.40
5110 5269 2.488545 ACTCAGTTCCTGCTACGTACTG 59.511 50.000 6.12 6.12 38.00 2.74
5111 5270 2.488545 CACTCAGTTCCTGCTACGTACT 59.511 50.000 0.00 0.00 0.00 2.73
5112 5271 2.486982 TCACTCAGTTCCTGCTACGTAC 59.513 50.000 0.00 0.00 0.00 3.67
5113 5272 2.486982 GTCACTCAGTTCCTGCTACGTA 59.513 50.000 0.00 0.00 0.00 3.57
5114 5273 1.269998 GTCACTCAGTTCCTGCTACGT 59.730 52.381 0.00 0.00 0.00 3.57
5115 5274 1.269723 TGTCACTCAGTTCCTGCTACG 59.730 52.381 0.00 0.00 0.00 3.51
5116 5275 2.953020 CTGTCACTCAGTTCCTGCTAC 58.047 52.381 0.00 0.00 39.17 3.58
5177 5339 3.022710 GCCCAAGCCCCATTTCAGC 62.023 63.158 0.00 0.00 0.00 4.26
5193 5355 1.070758 TGACAGACAGTTCAAGAGGCC 59.929 52.381 0.00 0.00 0.00 5.19
5194 5356 2.139118 GTGACAGACAGTTCAAGAGGC 58.861 52.381 0.00 0.00 0.00 4.70
5217 5379 3.370276 GGCTAGAGTTTTCGTATCGTCC 58.630 50.000 0.00 0.00 0.00 4.79
5218 5380 3.370276 GGGCTAGAGTTTTCGTATCGTC 58.630 50.000 0.00 0.00 0.00 4.20
5219 5381 2.100418 GGGGCTAGAGTTTTCGTATCGT 59.900 50.000 0.00 0.00 0.00 3.73
5220 5382 2.545322 GGGGGCTAGAGTTTTCGTATCG 60.545 54.545 0.00 0.00 0.00 2.92
5221 5383 3.109044 GGGGGCTAGAGTTTTCGTATC 57.891 52.381 0.00 0.00 0.00 2.24
5243 5405 0.258774 ACCCATCTGAAATTCGGGGG 59.741 55.000 12.74 12.74 41.55 5.40
5244 5406 1.392589 CACCCATCTGAAATTCGGGG 58.607 55.000 8.25 8.82 41.55 5.73
5245 5407 1.392589 CCACCCATCTGAAATTCGGG 58.607 55.000 1.53 2.17 43.02 5.14
5246 5408 1.392589 CCCACCCATCTGAAATTCGG 58.607 55.000 0.00 0.00 0.00 4.30
5247 5409 1.392589 CCCCACCCATCTGAAATTCG 58.607 55.000 0.00 0.00 0.00 3.34
5248 5410 1.114627 GCCCCACCCATCTGAAATTC 58.885 55.000 0.00 0.00 0.00 2.17
5249 5411 0.325577 GGCCCCACCCATCTGAAATT 60.326 55.000 0.00 0.00 0.00 1.82
5250 5412 1.311059 GGCCCCACCCATCTGAAAT 59.689 57.895 0.00 0.00 0.00 2.17
5251 5413 2.770130 GGCCCCACCCATCTGAAA 59.230 61.111 0.00 0.00 0.00 2.69
5260 5422 4.062032 GGGAGAAAGGGCCCCACC 62.062 72.222 21.43 14.66 39.89 4.61
5264 5426 2.947217 AAGGGGGAGAAAGGGCCC 60.947 66.667 16.46 16.46 43.91 5.80
5265 5427 1.927569 GAGAAGGGGGAGAAAGGGCC 61.928 65.000 0.00 0.00 0.00 5.80
5266 5428 1.610327 GAGAAGGGGGAGAAAGGGC 59.390 63.158 0.00 0.00 0.00 5.19
5267 5429 0.550147 TGGAGAAGGGGGAGAAAGGG 60.550 60.000 0.00 0.00 0.00 3.95
5268 5430 1.372501 TTGGAGAAGGGGGAGAAAGG 58.627 55.000 0.00 0.00 0.00 3.11
5269 5431 3.746792 AATTGGAGAAGGGGGAGAAAG 57.253 47.619 0.00 0.00 0.00 2.62
5270 5432 3.920197 TGTAATTGGAGAAGGGGGAGAAA 59.080 43.478 0.00 0.00 0.00 2.52
5271 5433 3.265995 GTGTAATTGGAGAAGGGGGAGAA 59.734 47.826 0.00 0.00 0.00 2.87
5272 5434 2.844348 GTGTAATTGGAGAAGGGGGAGA 59.156 50.000 0.00 0.00 0.00 3.71
5273 5435 2.846827 AGTGTAATTGGAGAAGGGGGAG 59.153 50.000 0.00 0.00 0.00 4.30
5274 5436 2.929301 AGTGTAATTGGAGAAGGGGGA 58.071 47.619 0.00 0.00 0.00 4.81
5275 5437 3.739401 AAGTGTAATTGGAGAAGGGGG 57.261 47.619 0.00 0.00 0.00 5.40
5276 5438 5.104109 TGGATAAGTGTAATTGGAGAAGGGG 60.104 44.000 0.00 0.00 0.00 4.79
5277 5439 6.001449 TGGATAAGTGTAATTGGAGAAGGG 57.999 41.667 0.00 0.00 0.00 3.95
5278 5440 7.056635 ACATGGATAAGTGTAATTGGAGAAGG 58.943 38.462 0.00 0.00 0.00 3.46
5279 5441 8.400947 CAACATGGATAAGTGTAATTGGAGAAG 58.599 37.037 0.00 0.00 0.00 2.85
5280 5442 7.148086 GCAACATGGATAAGTGTAATTGGAGAA 60.148 37.037 0.00 0.00 0.00 2.87
5281 5443 6.318648 GCAACATGGATAAGTGTAATTGGAGA 59.681 38.462 0.00 0.00 0.00 3.71
5282 5444 6.095300 TGCAACATGGATAAGTGTAATTGGAG 59.905 38.462 0.00 0.00 0.00 3.86
5283 5445 5.948758 TGCAACATGGATAAGTGTAATTGGA 59.051 36.000 0.00 0.00 0.00 3.53
5284 5446 6.206395 TGCAACATGGATAAGTGTAATTGG 57.794 37.500 0.00 0.00 0.00 3.16
5285 5447 5.745294 GCTGCAACATGGATAAGTGTAATTG 59.255 40.000 0.00 0.00 0.00 2.32
5286 5448 5.163519 GGCTGCAACATGGATAAGTGTAATT 60.164 40.000 0.50 0.00 0.00 1.40
5287 5449 4.339247 GGCTGCAACATGGATAAGTGTAAT 59.661 41.667 0.50 0.00 0.00 1.89
5288 5450 3.694072 GGCTGCAACATGGATAAGTGTAA 59.306 43.478 0.50 0.00 0.00 2.41
5289 5451 3.054434 AGGCTGCAACATGGATAAGTGTA 60.054 43.478 0.50 0.00 0.00 2.90
5290 5452 2.094675 GGCTGCAACATGGATAAGTGT 58.905 47.619 0.50 0.00 0.00 3.55
5291 5453 2.372264 AGGCTGCAACATGGATAAGTG 58.628 47.619 0.50 0.00 0.00 3.16
5292 5454 2.814805 AGGCTGCAACATGGATAAGT 57.185 45.000 0.50 0.00 0.00 2.24
5293 5455 2.545526 CGTAGGCTGCAACATGGATAAG 59.454 50.000 2.89 0.00 0.00 1.73
5294 5456 2.093181 ACGTAGGCTGCAACATGGATAA 60.093 45.455 2.89 0.00 0.00 1.75
5295 5457 1.484653 ACGTAGGCTGCAACATGGATA 59.515 47.619 2.89 0.00 0.00 2.59
5296 5458 0.253044 ACGTAGGCTGCAACATGGAT 59.747 50.000 2.89 0.00 0.00 3.41
5297 5459 0.899019 TACGTAGGCTGCAACATGGA 59.101 50.000 2.89 0.00 0.00 3.41
5298 5460 1.732941 TTACGTAGGCTGCAACATGG 58.267 50.000 2.89 0.00 0.00 3.66
5299 5461 3.058570 TGTTTTACGTAGGCTGCAACATG 60.059 43.478 2.89 0.00 0.00 3.21
5300 5462 3.058501 GTGTTTTACGTAGGCTGCAACAT 60.059 43.478 8.89 0.00 0.00 2.71
5301 5463 2.288458 GTGTTTTACGTAGGCTGCAACA 59.712 45.455 2.89 2.85 0.00 3.33
5302 5464 2.912366 GTGTTTTACGTAGGCTGCAAC 58.088 47.619 2.89 0.07 0.00 4.17
5322 5484 3.861113 TGCTCCACGTAAATAAAGCTACG 59.139 43.478 3.01 3.01 44.97 3.51
5323 5485 5.986004 ATGCTCCACGTAAATAAAGCTAC 57.014 39.130 0.00 0.00 0.00 3.58
5324 5486 7.010738 GTGTAATGCTCCACGTAAATAAAGCTA 59.989 37.037 0.00 0.00 0.00 3.32
5325 5487 5.878116 TGTAATGCTCCACGTAAATAAAGCT 59.122 36.000 0.00 0.00 0.00 3.74
5326 5488 5.963586 GTGTAATGCTCCACGTAAATAAAGC 59.036 40.000 0.00 0.00 0.00 3.51
5327 5489 6.182634 CGTGTAATGCTCCACGTAAATAAAG 58.817 40.000 4.17 0.00 46.87 1.85
5328 5490 6.097156 CGTGTAATGCTCCACGTAAATAAA 57.903 37.500 4.17 0.00 46.87 1.40
5329 5491 5.705813 CGTGTAATGCTCCACGTAAATAA 57.294 39.130 4.17 0.00 46.87 1.40
5337 5499 0.657840 GATGCCGTGTAATGCTCCAC 59.342 55.000 0.00 0.00 0.00 4.02
5338 5500 0.251634 TGATGCCGTGTAATGCTCCA 59.748 50.000 0.00 0.00 0.00 3.86
5339 5501 0.940126 CTGATGCCGTGTAATGCTCC 59.060 55.000 0.00 0.00 0.00 4.70
5340 5502 0.940126 CCTGATGCCGTGTAATGCTC 59.060 55.000 0.00 0.00 0.00 4.26
5341 5503 0.541392 TCCTGATGCCGTGTAATGCT 59.459 50.000 0.00 0.00 0.00 3.79
5342 5504 0.657840 GTCCTGATGCCGTGTAATGC 59.342 55.000 0.00 0.00 0.00 3.56
5343 5505 1.299541 GGTCCTGATGCCGTGTAATG 58.700 55.000 0.00 0.00 0.00 1.90
5344 5506 0.908910 TGGTCCTGATGCCGTGTAAT 59.091 50.000 0.00 0.00 0.00 1.89
5345 5507 0.908910 ATGGTCCTGATGCCGTGTAA 59.091 50.000 0.00 0.00 0.00 2.41
5346 5508 0.177836 CATGGTCCTGATGCCGTGTA 59.822 55.000 0.00 0.00 37.09 2.90
5347 5509 1.078214 CATGGTCCTGATGCCGTGT 60.078 57.895 0.00 0.00 37.09 4.49
5348 5510 0.179037 ATCATGGTCCTGATGCCGTG 60.179 55.000 0.00 0.00 41.76 4.94
5349 5511 0.179037 CATCATGGTCCTGATGCCGT 60.179 55.000 14.52 0.00 44.26 5.68
5350 5512 2.625375 CATCATGGTCCTGATGCCG 58.375 57.895 14.52 0.00 44.26 5.69
5388 5551 0.759346 ATAGAAGCCCACATCCGTCC 59.241 55.000 0.00 0.00 0.00 4.79
5391 5554 1.949525 CCAAATAGAAGCCCACATCCG 59.050 52.381 0.00 0.00 0.00 4.18
5394 5557 2.582636 ACTCCCAAATAGAAGCCCACAT 59.417 45.455 0.00 0.00 0.00 3.21
5408 5571 1.539372 TTCGCCCCCTTACTCCCAA 60.539 57.895 0.00 0.00 0.00 4.12
5409 5572 1.993391 CTTCGCCCCCTTACTCCCA 60.993 63.158 0.00 0.00 0.00 4.37
5410 5573 2.908796 CTTCGCCCCCTTACTCCC 59.091 66.667 0.00 0.00 0.00 4.30
5411 5574 2.189784 GCTTCGCCCCCTTACTCC 59.810 66.667 0.00 0.00 0.00 3.85
5412 5575 2.189784 GGCTTCGCCCCCTTACTC 59.810 66.667 0.00 0.00 44.06 2.59
5422 5585 0.676782 ATACCTTGGTGTGGCTTCGC 60.677 55.000 2.03 0.00 0.00 4.70
5423 5586 1.338674 TGATACCTTGGTGTGGCTTCG 60.339 52.381 2.03 0.00 0.00 3.79
5424 5587 2.290323 ACTGATACCTTGGTGTGGCTTC 60.290 50.000 2.03 0.00 0.00 3.86
5425 5588 1.705186 ACTGATACCTTGGTGTGGCTT 59.295 47.619 2.03 0.00 0.00 4.35
5426 5589 1.003580 CACTGATACCTTGGTGTGGCT 59.996 52.381 2.03 0.00 0.00 4.75
5427 5590 1.271379 ACACTGATACCTTGGTGTGGC 60.271 52.381 2.03 0.00 40.71 5.01
5428 5591 2.859165 ACACTGATACCTTGGTGTGG 57.141 50.000 2.03 0.00 40.71 4.17
5429 5592 4.265904 TGTACACTGATACCTTGGTGTG 57.734 45.455 2.03 4.69 41.97 3.82
5430 5593 4.347000 ACTTGTACACTGATACCTTGGTGT 59.653 41.667 0.00 0.00 43.84 4.16
5431 5594 4.690748 CACTTGTACACTGATACCTTGGTG 59.309 45.833 0.00 0.00 35.99 4.17
5432 5595 4.347000 ACACTTGTACACTGATACCTTGGT 59.653 41.667 0.00 0.00 0.00 3.67
5433 5596 4.894784 ACACTTGTACACTGATACCTTGG 58.105 43.478 0.00 0.00 0.00 3.61
5447 5610 6.017275 CCAAAATTAACGGGTGTACACTTGTA 60.017 38.462 24.55 10.22 0.00 2.41
5448 5611 5.221087 CCAAAATTAACGGGTGTACACTTGT 60.221 40.000 24.55 19.28 0.00 3.16
5449 5612 5.216648 CCAAAATTAACGGGTGTACACTTG 58.783 41.667 24.55 18.68 0.00 3.16
5450 5613 4.261698 GCCAAAATTAACGGGTGTACACTT 60.262 41.667 24.55 14.06 0.00 3.16
5451 5614 3.253921 GCCAAAATTAACGGGTGTACACT 59.746 43.478 24.55 8.27 0.00 3.55
5452 5615 3.253921 AGCCAAAATTAACGGGTGTACAC 59.746 43.478 18.01 18.01 0.00 2.90
5453 5616 3.488363 AGCCAAAATTAACGGGTGTACA 58.512 40.909 0.00 0.00 0.00 2.90
5454 5617 3.754850 AGAGCCAAAATTAACGGGTGTAC 59.245 43.478 0.00 0.00 0.00 2.90
5455 5618 4.004982 GAGAGCCAAAATTAACGGGTGTA 58.995 43.478 0.00 0.00 0.00 2.90
5456 5619 2.817844 GAGAGCCAAAATTAACGGGTGT 59.182 45.455 0.00 0.00 0.00 4.16
5457 5620 2.817258 TGAGAGCCAAAATTAACGGGTG 59.183 45.455 0.00 0.00 0.00 4.61
5458 5621 3.149005 TGAGAGCCAAAATTAACGGGT 57.851 42.857 0.00 0.00 0.00 5.28
5459 5622 4.082245 ACAATGAGAGCCAAAATTAACGGG 60.082 41.667 0.00 0.00 0.00 5.28
5460 5623 5.059404 ACAATGAGAGCCAAAATTAACGG 57.941 39.130 0.00 0.00 0.00 4.44
5461 5624 7.526608 TCTTACAATGAGAGCCAAAATTAACG 58.473 34.615 0.00 0.00 0.00 3.18
5462 5625 9.860898 ATTCTTACAATGAGAGCCAAAATTAAC 57.139 29.630 0.00 0.00 0.00 2.01
5463 5626 9.859427 CATTCTTACAATGAGAGCCAAAATTAA 57.141 29.630 0.00 0.00 0.00 1.40
5464 5627 9.023962 ACATTCTTACAATGAGAGCCAAAATTA 57.976 29.630 1.36 0.00 0.00 1.40
5465 5628 7.816031 CACATTCTTACAATGAGAGCCAAAATT 59.184 33.333 1.36 0.00 0.00 1.82
5466 5629 7.039504 ACACATTCTTACAATGAGAGCCAAAAT 60.040 33.333 1.36 0.00 0.00 1.82
5467 5630 6.265196 ACACATTCTTACAATGAGAGCCAAAA 59.735 34.615 1.36 0.00 0.00 2.44
5468 5631 5.769662 ACACATTCTTACAATGAGAGCCAAA 59.230 36.000 1.36 0.00 0.00 3.28
5469 5632 5.316167 ACACATTCTTACAATGAGAGCCAA 58.684 37.500 1.36 0.00 0.00 4.52
5470 5633 4.910195 ACACATTCTTACAATGAGAGCCA 58.090 39.130 1.36 0.00 0.00 4.75
5471 5634 5.007136 GCTACACATTCTTACAATGAGAGCC 59.993 44.000 1.36 0.00 31.05 4.70
5472 5635 5.814705 AGCTACACATTCTTACAATGAGAGC 59.185 40.000 1.36 6.56 34.07 4.09
5473 5636 6.238049 GCAGCTACACATTCTTACAATGAGAG 60.238 42.308 1.36 0.00 0.00 3.20
5474 5637 5.582269 GCAGCTACACATTCTTACAATGAGA 59.418 40.000 1.36 0.00 0.00 3.27
5475 5638 5.352293 TGCAGCTACACATTCTTACAATGAG 59.648 40.000 1.36 0.00 0.00 2.90
5476 5639 5.244755 TGCAGCTACACATTCTTACAATGA 58.755 37.500 1.36 0.00 0.00 2.57
5477 5640 5.550232 TGCAGCTACACATTCTTACAATG 57.450 39.130 0.00 0.00 0.00 2.82
5478 5641 5.392380 GCTTGCAGCTACACATTCTTACAAT 60.392 40.000 0.00 0.00 38.45 2.71
5479 5642 4.083324 GCTTGCAGCTACACATTCTTACAA 60.083 41.667 0.00 0.00 38.45 2.41
5480 5643 3.436704 GCTTGCAGCTACACATTCTTACA 59.563 43.478 0.00 0.00 38.45 2.41
5481 5644 4.008539 GCTTGCAGCTACACATTCTTAC 57.991 45.455 0.00 0.00 38.45 2.34
5494 5657 6.422776 TGAATACTTTACTAAGCTTGCAGC 57.577 37.500 9.86 0.47 42.84 5.25
5495 5658 7.806690 TGTTGAATACTTTACTAAGCTTGCAG 58.193 34.615 9.86 1.32 34.60 4.41
5496 5659 7.737972 TGTTGAATACTTTACTAAGCTTGCA 57.262 32.000 9.86 0.00 34.60 4.08
5545 5708 9.083422 CCAGAGATGGAGATTAGTGTTATCTTA 57.917 37.037 0.00 0.00 32.64 2.10
5546 5709 7.786943 TCCAGAGATGGAGATTAGTGTTATCTT 59.213 37.037 0.00 0.00 32.64 2.40
5547 5710 7.232534 GTCCAGAGATGGAGATTAGTGTTATCT 59.767 40.741 0.00 0.00 38.88 1.98
5548 5711 7.014711 TGTCCAGAGATGGAGATTAGTGTTATC 59.985 40.741 0.00 0.00 38.88 1.75
5549 5712 6.841229 TGTCCAGAGATGGAGATTAGTGTTAT 59.159 38.462 0.00 0.00 38.88 1.89
5550 5713 6.194967 TGTCCAGAGATGGAGATTAGTGTTA 58.805 40.000 0.00 0.00 38.88 2.41
5551 5714 5.026121 TGTCCAGAGATGGAGATTAGTGTT 58.974 41.667 0.00 0.00 38.88 3.32
5552 5715 4.614475 TGTCCAGAGATGGAGATTAGTGT 58.386 43.478 0.00 0.00 38.88 3.55
5553 5716 5.279406 GGATGTCCAGAGATGGAGATTAGTG 60.279 48.000 8.18 0.00 41.35 2.74
5554 5717 4.837860 GGATGTCCAGAGATGGAGATTAGT 59.162 45.833 8.18 0.00 41.35 2.24
5555 5718 4.837298 TGGATGTCCAGAGATGGAGATTAG 59.163 45.833 8.18 0.00 41.35 1.73
5556 5719 4.819610 TGGATGTCCAGAGATGGAGATTA 58.180 43.478 8.18 0.00 41.35 1.75
5557 5720 3.662078 TGGATGTCCAGAGATGGAGATT 58.338 45.455 8.18 0.00 41.35 2.40
5558 5721 3.341318 TGGATGTCCAGAGATGGAGAT 57.659 47.619 6.63 6.63 43.58 2.75
5559 5722 2.854736 TGGATGTCCAGAGATGGAGA 57.145 50.000 0.00 0.00 42.01 3.71
5571 5734 4.201822 GCTAGTTTTGGACGAATGGATGTC 60.202 45.833 0.00 0.00 0.00 3.06
5572 5735 3.689649 GCTAGTTTTGGACGAATGGATGT 59.310 43.478 0.00 0.00 0.00 3.06
5573 5736 3.941483 AGCTAGTTTTGGACGAATGGATG 59.059 43.478 0.00 0.00 0.00 3.51
5574 5737 4.192317 GAGCTAGTTTTGGACGAATGGAT 58.808 43.478 0.00 0.00 0.00 3.41
5575 5738 3.596214 GAGCTAGTTTTGGACGAATGGA 58.404 45.455 0.00 0.00 0.00 3.41
5576 5739 2.678336 GGAGCTAGTTTTGGACGAATGG 59.322 50.000 0.00 0.00 0.00 3.16
5577 5740 2.348666 CGGAGCTAGTTTTGGACGAATG 59.651 50.000 0.00 0.00 0.00 2.67
5578 5741 2.618053 CGGAGCTAGTTTTGGACGAAT 58.382 47.619 0.00 0.00 0.00 3.34
5579 5742 2.074547 CGGAGCTAGTTTTGGACGAA 57.925 50.000 0.00 0.00 0.00 3.85
5580 5743 3.806591 CGGAGCTAGTTTTGGACGA 57.193 52.632 0.00 0.00 0.00 4.20
5599 5762 3.813724 CTAAGGCAGGGGCAGGGG 61.814 72.222 0.00 0.00 43.71 4.79
5600 5763 2.692368 TCTAAGGCAGGGGCAGGG 60.692 66.667 0.00 0.00 43.71 4.45
5601 5764 2.914289 CTCTAAGGCAGGGGCAGG 59.086 66.667 0.00 0.00 43.71 4.85
5602 5765 2.191641 GCTCTAAGGCAGGGGCAG 59.808 66.667 0.00 0.00 43.71 4.85
5610 5773 1.522580 CGAAGGCTGGCTCTAAGGC 60.523 63.158 3.48 0.00 41.77 4.35
5611 5774 1.144936 CCGAAGGCTGGCTCTAAGG 59.855 63.158 3.48 2.13 46.14 2.69
5612 5775 4.844420 CCGAAGGCTGGCTCTAAG 57.156 61.111 3.48 0.00 46.14 2.18
5624 5787 4.452733 GGCCGTGGAGACCCGAAG 62.453 72.222 0.00 0.00 34.29 3.79
5630 5793 4.754667 GTTCCCGGCCGTGGAGAC 62.755 72.222 27.18 23.39 32.37 3.36
5641 5804 4.493747 GGAGCTCGACCGTTCCCG 62.494 72.222 7.83 0.00 0.00 5.14
5642 5805 4.493747 CGGAGCTCGACCGTTCCC 62.494 72.222 7.83 0.00 44.57 3.97
5651 5814 1.299014 GCTGTGAGATCGGAGCTCG 60.299 63.158 17.48 5.65 40.90 5.03
5652 5815 0.388659 ATGCTGTGAGATCGGAGCTC 59.611 55.000 16.02 16.02 32.41 4.09
5653 5816 0.388659 GATGCTGTGAGATCGGAGCT 59.611 55.000 0.00 0.00 32.41 4.09
5654 5817 0.388659 AGATGCTGTGAGATCGGAGC 59.611 55.000 0.00 0.00 0.00 4.70
5655 5818 2.741612 GAAGATGCTGTGAGATCGGAG 58.258 52.381 0.00 0.00 0.00 4.63
5656 5819 1.066152 CGAAGATGCTGTGAGATCGGA 59.934 52.381 0.00 0.00 0.00 4.55
5657 5820 1.202348 ACGAAGATGCTGTGAGATCGG 60.202 52.381 0.00 0.00 33.45 4.18
5658 5821 2.200792 ACGAAGATGCTGTGAGATCG 57.799 50.000 0.00 0.00 35.16 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.