Multiple sequence alignment - TraesCS3D01G074300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G074300 chr3D 100.000 3066 0 0 1 3066 35255175 35252110 0.000000e+00 5662.0
1 TraesCS3D01G074300 chr3D 90.076 262 26 0 353 614 421266364 421266625 1.050000e-89 340.0
2 TraesCS3D01G074300 chr3D 90.741 216 20 0 1 216 27271520 27271735 3.870000e-74 289.0
3 TraesCS3D01G074300 chr3D 100.000 148 0 0 729 876 35254374 35254227 1.080000e-69 274.0
4 TraesCS3D01G074300 chr3D 100.000 148 0 0 802 949 35254447 35254300 1.080000e-69 274.0
5 TraesCS3D01G074300 chr3D 100.000 75 0 0 729 803 35254301 35254227 4.120000e-29 139.0
6 TraesCS3D01G074300 chr3D 100.000 75 0 0 875 949 35254447 35254373 4.120000e-29 139.0
7 TraesCS3D01G074300 chr3B 98.313 889 13 1 1180 2066 58860700 58859812 0.000000e+00 1557.0
8 TraesCS3D01G074300 chr3B 93.545 914 50 8 2156 3066 58859260 58858353 0.000000e+00 1352.0
9 TraesCS3D01G074300 chr3B 90.272 257 25 0 358 614 464610212 464610468 1.360000e-88 337.0
10 TraesCS3D01G074300 chr3B 89.883 257 26 0 358 614 664911174 664910918 6.340000e-87 331.0
11 TraesCS3D01G074300 chr3B 88.119 202 5 3 618 803 58861262 58861064 3.980000e-54 222.0
12 TraesCS3D01G074300 chr3B 95.161 124 6 0 238 361 58861383 58861260 2.410000e-46 196.0
13 TraesCS3D01G074300 chr3B 89.600 125 6 5 2265 2384 823798639 823798517 5.290000e-33 152.0
14 TraesCS3D01G074300 chr3B 88.596 114 13 0 880 993 58861133 58861020 4.120000e-29 139.0
15 TraesCS3D01G074300 chr3B 97.143 70 2 0 807 876 58861133 58861064 5.370000e-23 119.0
16 TraesCS3D01G074300 chr3B 97.778 45 1 0 2156 2200 744218193 744218237 9.110000e-11 78.7
17 TraesCS3D01G074300 chr3B 97.674 43 1 0 2156 2198 244977349 244977307 1.180000e-09 75.0
18 TraesCS3D01G074300 chr7B 90.836 371 26 7 2616 2980 10945074 10945442 9.880000e-135 490.0
19 TraesCS3D01G074300 chr7B 89.883 257 26 0 358 614 464539691 464539947 6.340000e-87 331.0
20 TraesCS3D01G074300 chr7B 88.333 120 11 3 2265 2383 713282702 713282819 1.150000e-29 141.0
21 TraesCS3D01G074300 chr7B 97.826 46 1 0 2156 2201 17353789 17353834 2.530000e-11 80.5
22 TraesCS3D01G074300 chr7B 97.727 44 1 0 2156 2199 215970816 215970859 3.280000e-10 76.8
23 TraesCS3D01G074300 chr7B 100.000 28 0 0 2468 2495 174576275 174576248 6.000000e-03 52.8
24 TraesCS3D01G074300 chr1D 89.119 386 34 8 2601 2981 240981086 240980704 9.950000e-130 473.0
25 TraesCS3D01G074300 chr1D 87.500 56 7 0 2541 2596 61942185 61942130 7.100000e-07 65.8
26 TraesCS3D01G074300 chr3A 83.302 527 60 17 2463 2981 621921723 621922229 7.750000e-126 460.0
27 TraesCS3D01G074300 chr3A 85.938 128 17 1 2469 2596 113706238 113706112 5.330000e-28 135.0
28 TraesCS3D01G074300 chr2D 84.823 481 43 14 2472 2927 14821113 14820638 1.000000e-124 457.0
29 TraesCS3D01G074300 chr2D 90.347 259 24 1 356 614 481281932 481282189 3.790000e-89 339.0
30 TraesCS3D01G074300 chr2D 87.823 271 30 2 347 614 202884975 202885245 6.380000e-82 315.0
31 TraesCS3D01G074300 chr2D 77.188 320 55 13 1070 1381 610044605 610044296 1.460000e-38 171.0
32 TraesCS3D01G074300 chr2D 88.496 113 13 0 2472 2584 634559382 634559270 1.480000e-28 137.0
33 TraesCS3D01G074300 chr5B 87.855 387 39 7 2601 2981 640391425 640391041 6.030000e-122 448.0
34 TraesCS3D01G074300 chr5B 82.400 500 61 17 2470 2964 381916148 381915671 7.910000e-111 411.0
35 TraesCS3D01G074300 chr5B 85.606 132 18 1 2470 2600 640391600 640391469 1.480000e-28 137.0
36 TraesCS3D01G074300 chr1B 88.770 374 28 9 2615 2981 654242934 654243300 2.170000e-121 446.0
37 TraesCS3D01G074300 chr1B 90.076 262 26 0 353 614 386772388 386772649 1.050000e-89 340.0
38 TraesCS3D01G074300 chr1B 89.796 49 5 0 2548 2596 277772918 277772870 2.550000e-06 63.9
39 TraesCS3D01G074300 chr2B 89.091 330 29 6 2601 2927 26661349 26661024 1.320000e-108 403.0
40 TraesCS3D01G074300 chr2B 95.349 215 10 0 1 215 637583293 637583079 2.930000e-90 342.0
41 TraesCS3D01G074300 chr2B 77.679 560 109 11 1486 2037 744870006 744869455 8.200000e-86 327.0
42 TraesCS3D01G074300 chr2B 75.267 562 119 16 1486 2037 744411570 744412121 1.830000e-62 250.0
43 TraesCS3D01G074300 chr2B 74.945 455 64 28 2552 2981 368859766 368860195 2.450000e-36 163.0
44 TraesCS3D01G074300 chr2B 83.333 168 20 5 1070 1233 744226085 744226248 6.850000e-32 148.0
45 TraesCS3D01G074300 chr2B 86.154 130 15 3 2266 2394 723130445 723130572 1.480000e-28 137.0
46 TraesCS3D01G074300 chr2B 83.000 100 17 0 2472 2571 595980641 595980542 1.170000e-14 91.6
47 TraesCS3D01G074300 chr2B 86.567 67 4 4 2149 2210 759519883 759519949 5.490000e-08 69.4
48 TraesCS3D01G074300 chr4B 90.458 262 25 0 353 614 663552088 663551827 2.260000e-91 346.0
49 TraesCS3D01G074300 chr4B 87.956 274 31 2 340 612 418510703 418510975 3.810000e-84 322.0
50 TraesCS3D01G074300 chr4B 88.333 120 11 3 2265 2383 67923443 67923560 1.150000e-29 141.0
51 TraesCS3D01G074300 chr2A 92.958 213 15 0 2 214 102197530 102197742 8.260000e-81 311.0
52 TraesCS3D01G074300 chr2A 83.234 167 20 5 1071 1233 742781928 742781766 2.460000e-31 147.0
53 TraesCS3D01G074300 chrUn 92.130 216 16 1 1 216 131944342 131944556 1.380000e-78 303.0
54 TraesCS3D01G074300 chr5D 92.130 216 16 1 1 216 505100409 505100195 1.380000e-78 303.0
55 TraesCS3D01G074300 chr5D 87.705 244 24 5 1 238 55067631 55067388 2.330000e-71 279.0
56 TraesCS3D01G074300 chr7D 88.525 244 22 5 1 238 151836910 151837153 1.080000e-74 291.0
57 TraesCS3D01G074300 chr7D 88.889 117 12 1 2263 2379 107676242 107676127 3.190000e-30 143.0
58 TraesCS3D01G074300 chr4D 90.278 216 21 0 1 216 507486128 507485913 1.800000e-72 283.0
59 TraesCS3D01G074300 chr4D 90.741 54 3 2 2160 2211 166011931 166011984 1.530000e-08 71.3
60 TraesCS3D01G074300 chr1A 89.815 216 20 2 2 216 533293085 533292871 3.010000e-70 276.0
61 TraesCS3D01G074300 chr5A 89.076 119 10 3 2265 2382 436638876 436638992 8.860000e-31 145.0
62 TraesCS3D01G074300 chr7A 90.000 110 11 0 2273 2382 602656725 602656834 3.190000e-30 143.0
63 TraesCS3D01G074300 chr6D 88.333 120 11 3 2265 2383 36260821 36260938 1.150000e-29 141.0
64 TraesCS3D01G074300 chr4A 83.333 108 16 2 2470 2576 100949188 100949082 7.000000e-17 99.0
65 TraesCS3D01G074300 chr4A 97.674 43 1 0 2156 2198 619766254 619766212 1.180000e-09 75.0
66 TraesCS3D01G074300 chr6B 95.652 46 2 0 2156 2201 218221903 218221948 1.180000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G074300 chr3D 35252110 35255175 3065 True 1297.6 5662 100.0000 1 3066 5 chr3D.!!$R1 3065
1 TraesCS3D01G074300 chr3B 58858353 58861383 3030 True 597.5 1557 93.4795 238 3066 6 chr3B.!!$R4 2828
2 TraesCS3D01G074300 chr3A 621921723 621922229 506 False 460.0 460 83.3020 2463 2981 1 chr3A.!!$F1 518
3 TraesCS3D01G074300 chr5B 640391041 640391600 559 True 292.5 448 86.7305 2470 2981 2 chr5B.!!$R2 511
4 TraesCS3D01G074300 chr2B 744869455 744870006 551 True 327.0 327 77.6790 1486 2037 1 chr2B.!!$R4 551
5 TraesCS3D01G074300 chr2B 744411570 744412121 551 False 250.0 250 75.2670 1486 2037 1 chr2B.!!$F4 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
54 55 0.028902 GCCGTCAAGCGAAAAACACT 59.971 50.0 0.0 0.0 44.77 3.55 F
1007 1024 0.031449 GAGAGAGCAGGTATGGCGAC 59.969 60.0 0.0 0.0 36.08 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1039 1056 0.618458 TCATCCCCGGTGAAGAAAGG 59.382 55.0 0.0 0.0 0.00 3.11 R
2422 3024 0.466124 AGCTAATGGAGGAAGCCGTC 59.534 55.0 0.0 0.0 36.92 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.595609 GTGAATCGTCAGCGCTTTTG 58.404 50.000 7.50 0.00 38.14 2.44
20 21 1.194547 GTGAATCGTCAGCGCTTTTGA 59.805 47.619 7.50 5.84 38.14 2.69
21 22 1.194547 TGAATCGTCAGCGCTTTTGAC 59.805 47.619 7.50 13.11 41.14 3.18
24 25 2.127232 GTCAGCGCTTTTGACGGC 60.127 61.111 7.50 0.00 36.01 5.68
43 44 3.411351 CCGTCCGTTGCCGTCAAG 61.411 66.667 0.00 0.00 31.93 3.02
44 45 4.072088 CGTCCGTTGCCGTCAAGC 62.072 66.667 0.00 0.00 31.93 4.01
45 46 4.072088 GTCCGTTGCCGTCAAGCG 62.072 66.667 0.00 0.00 40.95 4.68
46 47 4.287781 TCCGTTGCCGTCAAGCGA 62.288 61.111 3.42 0.00 44.77 4.93
47 48 3.342627 CCGTTGCCGTCAAGCGAA 61.343 61.111 3.42 0.00 44.77 4.70
48 49 2.629210 CGTTGCCGTCAAGCGAAA 59.371 55.556 0.00 0.00 44.77 3.46
49 50 1.010574 CGTTGCCGTCAAGCGAAAA 60.011 52.632 0.00 0.00 44.77 2.29
50 51 0.590230 CGTTGCCGTCAAGCGAAAAA 60.590 50.000 0.00 0.00 44.77 1.94
51 52 0.843872 GTTGCCGTCAAGCGAAAAAC 59.156 50.000 0.00 0.00 44.77 2.43
52 53 0.452184 TTGCCGTCAAGCGAAAAACA 59.548 45.000 0.00 0.00 44.77 2.83
53 54 0.248296 TGCCGTCAAGCGAAAAACAC 60.248 50.000 0.00 0.00 44.77 3.32
54 55 0.028902 GCCGTCAAGCGAAAAACACT 59.971 50.000 0.00 0.00 44.77 3.55
55 56 1.741993 CCGTCAAGCGAAAAACACTG 58.258 50.000 0.00 0.00 44.77 3.66
56 57 1.112459 CGTCAAGCGAAAAACACTGC 58.888 50.000 0.00 0.00 44.77 4.40
57 58 1.477105 GTCAAGCGAAAAACACTGCC 58.523 50.000 0.00 0.00 0.00 4.85
58 59 1.098869 TCAAGCGAAAAACACTGCCA 58.901 45.000 0.00 0.00 0.00 4.92
59 60 1.474478 TCAAGCGAAAAACACTGCCAA 59.526 42.857 0.00 0.00 0.00 4.52
60 61 1.587946 CAAGCGAAAAACACTGCCAAC 59.412 47.619 0.00 0.00 0.00 3.77
61 62 0.248458 AGCGAAAAACACTGCCAACG 60.248 50.000 0.00 0.00 0.00 4.10
62 63 1.206115 GCGAAAAACACTGCCAACGG 61.206 55.000 0.00 0.00 0.00 4.44
73 74 3.918102 GCCAACGGCTAAACTATGC 57.082 52.632 0.00 0.00 46.69 3.14
74 75 0.380733 GCCAACGGCTAAACTATGCC 59.619 55.000 0.00 0.00 46.69 4.40
79 80 1.932277 GGCTAAACTATGCCGACGC 59.068 57.895 0.00 0.00 39.71 5.19
80 81 1.496403 GGCTAAACTATGCCGACGCC 61.496 60.000 0.00 0.00 39.71 5.68
81 82 0.529992 GCTAAACTATGCCGACGCCT 60.530 55.000 0.00 0.00 0.00 5.52
82 83 1.209128 CTAAACTATGCCGACGCCTG 58.791 55.000 0.00 0.00 0.00 4.85
83 84 0.179094 TAAACTATGCCGACGCCTGG 60.179 55.000 0.00 0.00 0.00 4.45
130 131 1.941325 GCCGATGGCTATACTATGCC 58.059 55.000 0.00 0.00 46.69 4.40
135 136 3.715854 GGCTATACTATGCCGACGG 57.284 57.895 10.29 10.29 39.71 4.79
136 137 0.886563 GGCTATACTATGCCGACGGT 59.113 55.000 16.73 0.00 39.71 4.83
137 138 1.135460 GGCTATACTATGCCGACGGTC 60.135 57.143 16.73 8.54 39.71 4.79
138 139 1.811359 GCTATACTATGCCGACGGTCT 59.189 52.381 16.73 5.65 0.00 3.85
139 140 2.414293 GCTATACTATGCCGACGGTCTG 60.414 54.545 16.73 6.28 0.00 3.51
140 141 1.977056 ATACTATGCCGACGGTCTGA 58.023 50.000 16.73 0.00 0.00 3.27
141 142 1.019673 TACTATGCCGACGGTCTGAC 58.980 55.000 16.73 0.00 0.00 3.51
142 143 0.963856 ACTATGCCGACGGTCTGACA 60.964 55.000 16.73 4.55 0.00 3.58
143 144 0.525668 CTATGCCGACGGTCTGACAC 60.526 60.000 16.73 0.00 0.00 3.67
144 145 2.261172 TATGCCGACGGTCTGACACG 62.261 60.000 16.73 12.71 0.00 4.49
145 146 4.034258 GCCGACGGTCTGACACGA 62.034 66.667 16.73 0.00 0.00 4.35
146 147 2.126965 CCGACGGTCTGACACGAC 60.127 66.667 20.23 14.74 0.00 4.34
147 148 2.614446 CCGACGGTCTGACACGACT 61.614 63.158 20.23 4.29 34.38 4.18
148 149 1.293963 CCGACGGTCTGACACGACTA 61.294 60.000 20.23 0.00 34.38 2.59
149 150 0.179230 CGACGGTCTGACACGACTAC 60.179 60.000 20.23 10.41 34.38 2.73
150 151 0.179230 GACGGTCTGACACGACTACG 60.179 60.000 20.23 10.96 45.75 3.51
151 152 1.511464 CGGTCTGACACGACTACGC 60.511 63.158 10.38 0.00 43.96 4.42
152 153 1.874562 GGTCTGACACGACTACGCT 59.125 57.895 10.38 0.00 43.96 5.07
153 154 0.454620 GGTCTGACACGACTACGCTG 60.455 60.000 10.38 0.00 43.96 5.18
154 155 0.516001 GTCTGACACGACTACGCTGA 59.484 55.000 2.24 0.00 43.96 4.26
155 156 0.516001 TCTGACACGACTACGCTGAC 59.484 55.000 0.00 0.00 43.96 3.51
167 168 2.510948 CGCTGACGTGATCTATGCC 58.489 57.895 0.00 0.00 33.53 4.40
168 169 1.271446 CGCTGACGTGATCTATGCCG 61.271 60.000 0.00 0.00 33.53 5.69
169 170 0.030773 GCTGACGTGATCTATGCCGA 59.969 55.000 0.00 0.00 0.00 5.54
170 171 1.759994 CTGACGTGATCTATGCCGAC 58.240 55.000 0.00 0.00 0.00 4.79
171 172 0.028902 TGACGTGATCTATGCCGACG 59.971 55.000 0.00 0.00 36.14 5.12
172 173 0.660595 GACGTGATCTATGCCGACGG 60.661 60.000 10.29 10.29 34.36 4.79
201 202 0.792640 GCATAGATCAATGCCGACGG 59.207 55.000 10.29 10.29 45.31 4.79
202 203 1.432514 CATAGATCAATGCCGACGGG 58.567 55.000 17.22 0.00 0.00 5.28
203 204 1.000843 CATAGATCAATGCCGACGGGA 59.999 52.381 17.22 14.58 34.06 5.14
204 205 1.116308 TAGATCAATGCCGACGGGAA 58.884 50.000 13.59 0.00 34.06 3.97
205 206 0.251916 AGATCAATGCCGACGGGAAA 59.748 50.000 13.59 1.11 34.06 3.13
206 207 1.134098 AGATCAATGCCGACGGGAAAT 60.134 47.619 13.59 6.59 34.06 2.17
207 208 1.002468 GATCAATGCCGACGGGAAATG 60.002 52.381 13.59 14.77 34.06 2.32
208 209 0.035915 TCAATGCCGACGGGAAATGA 60.036 50.000 13.59 16.91 34.06 2.57
209 210 0.098728 CAATGCCGACGGGAAATGAC 59.901 55.000 13.59 0.00 34.06 3.06
210 211 1.029947 AATGCCGACGGGAAATGACC 61.030 55.000 13.59 0.00 34.06 4.02
211 212 1.910580 ATGCCGACGGGAAATGACCT 61.911 55.000 13.59 0.00 34.06 3.85
212 213 1.259142 TGCCGACGGGAAATGACCTA 61.259 55.000 17.22 0.00 34.06 3.08
213 214 0.106149 GCCGACGGGAAATGACCTAT 59.894 55.000 17.22 0.00 34.06 2.57
214 215 1.865865 CCGACGGGAAATGACCTATG 58.134 55.000 5.81 0.00 34.06 2.23
215 216 1.217882 CGACGGGAAATGACCTATGC 58.782 55.000 0.00 0.00 0.00 3.14
216 217 1.472552 CGACGGGAAATGACCTATGCA 60.473 52.381 0.00 0.00 0.00 3.96
217 218 2.806745 CGACGGGAAATGACCTATGCAT 60.807 50.000 3.79 3.79 0.00 3.96
218 219 3.554129 CGACGGGAAATGACCTATGCATA 60.554 47.826 6.20 6.20 0.00 3.14
219 220 3.997021 GACGGGAAATGACCTATGCATAG 59.003 47.826 24.33 24.33 0.00 2.23
226 227 2.656646 CCTATGCATAGGCCGCGA 59.343 61.111 34.18 0.31 43.08 5.87
227 228 1.446792 CCTATGCATAGGCCGCGAG 60.447 63.158 34.18 13.49 43.08 5.03
228 229 1.290324 CTATGCATAGGCCGCGAGT 59.710 57.895 23.70 0.00 40.13 4.18
229 230 0.734253 CTATGCATAGGCCGCGAGTC 60.734 60.000 23.70 0.00 40.13 3.36
230 231 1.179174 TATGCATAGGCCGCGAGTCT 61.179 55.000 8.23 7.40 40.13 3.24
231 232 2.659897 GCATAGGCCGCGAGTCTG 60.660 66.667 8.23 0.00 0.00 3.51
232 233 2.028190 CATAGGCCGCGAGTCTGG 59.972 66.667 8.23 0.00 0.00 3.86
233 234 2.442272 ATAGGCCGCGAGTCTGGT 60.442 61.111 8.23 0.00 0.00 4.00
234 235 1.152819 ATAGGCCGCGAGTCTGGTA 60.153 57.895 8.23 0.00 0.00 3.25
235 236 1.173444 ATAGGCCGCGAGTCTGGTAG 61.173 60.000 8.23 0.00 0.00 3.18
236 237 2.547640 TAGGCCGCGAGTCTGGTAGT 62.548 60.000 8.23 0.00 0.00 2.73
242 243 1.153745 CGAGTCTGGTAGTGCCTGC 60.154 63.158 0.00 0.00 38.35 4.85
265 266 4.426416 GCTTCGTAAACAAAAGTTGGGTT 58.574 39.130 0.00 0.00 34.12 4.11
315 316 8.072321 GGATAGATCCAGACATGTATGTATGT 57.928 38.462 18.59 9.98 45.73 2.29
318 319 6.753180 AGATCCAGACATGTATGTATGTGAC 58.247 40.000 18.59 8.24 45.73 3.67
365 366 7.228314 TCGATCTCGACAAATAATAATCCCT 57.772 36.000 0.00 0.00 44.22 4.20
366 367 7.313646 TCGATCTCGACAAATAATAATCCCTC 58.686 38.462 0.00 0.00 44.22 4.30
367 368 6.531948 CGATCTCGACAAATAATAATCCCTCC 59.468 42.308 0.00 0.00 43.02 4.30
368 369 6.740944 TCTCGACAAATAATAATCCCTCCA 57.259 37.500 0.00 0.00 0.00 3.86
369 370 7.316393 TCTCGACAAATAATAATCCCTCCAT 57.684 36.000 0.00 0.00 0.00 3.41
370 371 7.745717 TCTCGACAAATAATAATCCCTCCATT 58.254 34.615 0.00 0.00 0.00 3.16
371 372 7.878127 TCTCGACAAATAATAATCCCTCCATTC 59.122 37.037 0.00 0.00 0.00 2.67
372 373 6.940298 TCGACAAATAATAATCCCTCCATTCC 59.060 38.462 0.00 0.00 0.00 3.01
373 374 6.714810 CGACAAATAATAATCCCTCCATTCCA 59.285 38.462 0.00 0.00 0.00 3.53
374 375 7.308589 CGACAAATAATAATCCCTCCATTCCAC 60.309 40.741 0.00 0.00 0.00 4.02
375 376 7.361438 ACAAATAATAATCCCTCCATTCCACA 58.639 34.615 0.00 0.00 0.00 4.17
376 377 7.843760 ACAAATAATAATCCCTCCATTCCACAA 59.156 33.333 0.00 0.00 0.00 3.33
377 378 8.873144 CAAATAATAATCCCTCCATTCCACAAT 58.127 33.333 0.00 0.00 0.00 2.71
378 379 8.426569 AATAATAATCCCTCCATTCCACAATG 57.573 34.615 0.00 0.00 39.45 2.82
379 380 3.763557 AATCCCTCCATTCCACAATGT 57.236 42.857 0.00 0.00 38.22 2.71
380 381 4.879295 AATCCCTCCATTCCACAATGTA 57.121 40.909 0.00 0.00 38.22 2.29
381 382 3.931907 TCCCTCCATTCCACAATGTAG 57.068 47.619 0.00 0.00 38.22 2.74
382 383 3.189606 TCCCTCCATTCCACAATGTAGT 58.810 45.455 0.00 0.00 38.22 2.73
383 384 3.054434 TCCCTCCATTCCACAATGTAGTG 60.054 47.826 0.00 0.00 38.22 2.74
384 385 2.684881 CCTCCATTCCACAATGTAGTGC 59.315 50.000 0.00 0.00 38.22 4.40
385 386 2.684881 CTCCATTCCACAATGTAGTGCC 59.315 50.000 0.00 0.00 38.22 5.01
386 387 2.308570 TCCATTCCACAATGTAGTGCCT 59.691 45.455 0.00 0.00 38.22 4.75
387 388 3.521531 TCCATTCCACAATGTAGTGCCTA 59.478 43.478 0.00 0.00 38.22 3.93
388 389 4.165950 TCCATTCCACAATGTAGTGCCTAT 59.834 41.667 0.00 0.00 38.22 2.57
389 390 4.276678 CCATTCCACAATGTAGTGCCTATG 59.723 45.833 0.00 0.00 38.22 2.23
390 391 3.558931 TCCACAATGTAGTGCCTATGG 57.441 47.619 0.00 0.00 38.18 2.74
391 392 3.111484 TCCACAATGTAGTGCCTATGGA 58.889 45.455 0.00 0.00 38.18 3.41
392 393 3.716353 TCCACAATGTAGTGCCTATGGAT 59.284 43.478 0.00 0.00 38.18 3.41
393 394 4.165950 TCCACAATGTAGTGCCTATGGATT 59.834 41.667 0.00 0.00 38.18 3.01
394 395 4.889409 CCACAATGTAGTGCCTATGGATTT 59.111 41.667 0.00 0.00 38.18 2.17
395 396 5.360714 CCACAATGTAGTGCCTATGGATTTT 59.639 40.000 0.00 0.00 38.18 1.82
396 397 6.127366 CCACAATGTAGTGCCTATGGATTTTT 60.127 38.462 0.00 0.00 38.18 1.94
397 398 6.753279 CACAATGTAGTGCCTATGGATTTTTG 59.247 38.462 0.00 0.00 32.04 2.44
398 399 6.437162 ACAATGTAGTGCCTATGGATTTTTGT 59.563 34.615 0.00 0.00 0.00 2.83
399 400 5.895636 TGTAGTGCCTATGGATTTTTGTG 57.104 39.130 0.00 0.00 0.00 3.33
400 401 4.704540 TGTAGTGCCTATGGATTTTTGTGG 59.295 41.667 0.00 0.00 0.00 4.17
401 402 4.046286 AGTGCCTATGGATTTTTGTGGA 57.954 40.909 0.00 0.00 0.00 4.02
402 403 4.415596 AGTGCCTATGGATTTTTGTGGAA 58.584 39.130 0.00 0.00 0.00 3.53
403 404 4.463891 AGTGCCTATGGATTTTTGTGGAAG 59.536 41.667 0.00 0.00 0.00 3.46
404 405 4.220602 GTGCCTATGGATTTTTGTGGAAGT 59.779 41.667 0.00 0.00 0.00 3.01
405 406 4.462483 TGCCTATGGATTTTTGTGGAAGTC 59.538 41.667 0.00 0.00 0.00 3.01
406 407 4.462483 GCCTATGGATTTTTGTGGAAGTCA 59.538 41.667 0.00 0.00 0.00 3.41
407 408 5.393461 GCCTATGGATTTTTGTGGAAGTCAG 60.393 44.000 0.00 0.00 0.00 3.51
408 409 5.945784 CCTATGGATTTTTGTGGAAGTCAGA 59.054 40.000 0.00 0.00 0.00 3.27
409 410 5.712152 ATGGATTTTTGTGGAAGTCAGAC 57.288 39.130 0.00 0.00 0.00 3.51
410 411 4.792068 TGGATTTTTGTGGAAGTCAGACT 58.208 39.130 0.00 0.00 0.00 3.24
411 412 5.200483 TGGATTTTTGTGGAAGTCAGACTT 58.800 37.500 16.11 16.11 41.95 3.01
412 413 5.656416 TGGATTTTTGTGGAAGTCAGACTTT 59.344 36.000 17.19 1.25 38.80 2.66
413 414 5.979517 GGATTTTTGTGGAAGTCAGACTTTG 59.020 40.000 17.19 0.00 38.80 2.77
414 415 6.183360 GGATTTTTGTGGAAGTCAGACTTTGA 60.183 38.462 17.19 4.34 38.80 2.69
415 416 6.773976 TTTTTGTGGAAGTCAGACTTTGAT 57.226 33.333 17.19 0.00 38.80 2.57
416 417 7.873719 TTTTTGTGGAAGTCAGACTTTGATA 57.126 32.000 17.19 2.98 38.80 2.15
417 418 7.873719 TTTTGTGGAAGTCAGACTTTGATAA 57.126 32.000 17.19 8.52 38.80 1.75
418 419 6.861065 TTGTGGAAGTCAGACTTTGATAAC 57.139 37.500 17.19 11.19 38.80 1.89
419 420 6.174720 TGTGGAAGTCAGACTTTGATAACT 57.825 37.500 17.19 0.00 38.80 2.24
420 421 6.591935 TGTGGAAGTCAGACTTTGATAACTT 58.408 36.000 17.19 0.00 38.80 2.66
421 422 7.054124 TGTGGAAGTCAGACTTTGATAACTTT 58.946 34.615 17.19 0.00 38.80 2.66
422 423 7.012327 TGTGGAAGTCAGACTTTGATAACTTTG 59.988 37.037 17.19 0.00 38.80 2.77
423 424 7.226720 GTGGAAGTCAGACTTTGATAACTTTGA 59.773 37.037 17.19 0.00 38.80 2.69
424 425 7.226720 TGGAAGTCAGACTTTGATAACTTTGAC 59.773 37.037 17.19 0.00 38.80 3.18
425 426 7.308049 GGAAGTCAGACTTTGATAACTTTGACC 60.308 40.741 17.19 5.32 38.80 4.02
426 427 6.591935 AGTCAGACTTTGATAACTTTGACCA 58.408 36.000 0.00 0.00 38.29 4.02
427 428 7.054124 AGTCAGACTTTGATAACTTTGACCAA 58.946 34.615 0.00 0.00 38.29 3.67
428 429 7.556275 AGTCAGACTTTGATAACTTTGACCAAA 59.444 33.333 0.00 0.00 38.29 3.28
429 430 8.352942 GTCAGACTTTGATAACTTTGACCAAAT 58.647 33.333 0.00 0.00 38.29 2.32
430 431 8.912988 TCAGACTTTGATAACTTTGACCAAATT 58.087 29.630 0.00 0.00 0.00 1.82
431 432 9.533253 CAGACTTTGATAACTTTGACCAAATTT 57.467 29.630 4.06 4.06 0.00 1.82
447 448 9.793259 TGACCAAATTTATAGAGAAAACAGTCT 57.207 29.630 0.00 0.00 0.00 3.24
461 462 9.303537 GAGAAAACAGTCTATATCTACAACACC 57.696 37.037 0.00 0.00 0.00 4.16
462 463 8.812972 AGAAAACAGTCTATATCTACAACACCA 58.187 33.333 0.00 0.00 0.00 4.17
463 464 9.431887 GAAAACAGTCTATATCTACAACACCAA 57.568 33.333 0.00 0.00 0.00 3.67
464 465 9.787435 AAAACAGTCTATATCTACAACACCAAA 57.213 29.630 0.00 0.00 0.00 3.28
465 466 9.959721 AAACAGTCTATATCTACAACACCAAAT 57.040 29.630 0.00 0.00 0.00 2.32
476 477 9.905713 ATCTACAACACCAAATATGTACATTCT 57.094 29.630 14.77 0.00 0.00 2.40
477 478 9.161629 TCTACAACACCAAATATGTACATTCTG 57.838 33.333 14.77 8.83 0.00 3.02
478 479 7.994425 ACAACACCAAATATGTACATTCTGA 57.006 32.000 14.77 0.00 0.00 3.27
479 480 8.402798 ACAACACCAAATATGTACATTCTGAA 57.597 30.769 14.77 0.00 0.00 3.02
480 481 8.855110 ACAACACCAAATATGTACATTCTGAAA 58.145 29.630 14.77 0.00 0.00 2.69
481 482 9.689976 CAACACCAAATATGTACATTCTGAAAA 57.310 29.630 14.77 0.00 0.00 2.29
500 501 9.330063 TCTGAAAATATAACTCATGATGTGTCC 57.670 33.333 0.00 0.00 0.00 4.02
501 502 9.112725 CTGAAAATATAACTCATGATGTGTCCA 57.887 33.333 0.00 0.00 0.00 4.02
502 503 9.460019 TGAAAATATAACTCATGATGTGTCCAA 57.540 29.630 0.00 0.00 0.00 3.53
505 506 9.631257 AAATATAACTCATGATGTGTCCAATGA 57.369 29.630 0.00 0.00 0.00 2.57
506 507 9.803507 AATATAACTCATGATGTGTCCAATGAT 57.196 29.630 0.00 0.00 0.00 2.45
507 508 5.830000 AACTCATGATGTGTCCAATGATG 57.170 39.130 0.00 0.00 0.00 3.07
508 509 4.851843 ACTCATGATGTGTCCAATGATGT 58.148 39.130 0.00 0.00 0.00 3.06
509 510 4.638865 ACTCATGATGTGTCCAATGATGTG 59.361 41.667 0.00 0.00 0.00 3.21
510 511 3.379057 TCATGATGTGTCCAATGATGTGC 59.621 43.478 0.00 0.00 0.00 4.57
511 512 2.792878 TGATGTGTCCAATGATGTGCA 58.207 42.857 0.00 0.00 0.00 4.57
512 513 3.358118 TGATGTGTCCAATGATGTGCAT 58.642 40.909 0.00 0.00 39.43 3.96
514 515 4.221041 TGATGTGTCCAATGATGTGCATTT 59.779 37.500 0.00 0.00 44.68 2.32
515 516 3.915536 TGTGTCCAATGATGTGCATTTG 58.084 40.909 0.00 0.00 44.68 2.32
516 517 3.255725 GTGTCCAATGATGTGCATTTGG 58.744 45.455 8.57 8.57 44.68 3.28
517 518 2.898612 TGTCCAATGATGTGCATTTGGT 59.101 40.909 12.63 0.00 44.68 3.67
518 519 4.082300 GTGTCCAATGATGTGCATTTGGTA 60.082 41.667 12.63 4.51 44.68 3.25
519 520 4.710865 TGTCCAATGATGTGCATTTGGTAT 59.289 37.500 12.63 0.00 44.68 2.73
520 521 5.187381 TGTCCAATGATGTGCATTTGGTATT 59.813 36.000 12.63 0.00 44.68 1.89
521 522 6.379417 TGTCCAATGATGTGCATTTGGTATTA 59.621 34.615 12.63 0.00 44.68 0.98
522 523 7.069702 TGTCCAATGATGTGCATTTGGTATTAT 59.930 33.333 12.63 0.00 44.68 1.28
523 524 8.575589 GTCCAATGATGTGCATTTGGTATTATA 58.424 33.333 12.63 0.00 44.68 0.98
524 525 8.575589 TCCAATGATGTGCATTTGGTATTATAC 58.424 33.333 12.63 0.00 44.68 1.47
525 526 8.358895 CCAATGATGTGCATTTGGTATTATACA 58.641 33.333 4.67 0.00 44.68 2.29
526 527 9.917129 CAATGATGTGCATTTGGTATTATACAT 57.083 29.630 4.67 0.00 44.68 2.29
527 528 9.917129 AATGATGTGCATTTGGTATTATACATG 57.083 29.630 4.67 0.00 44.68 3.21
528 529 8.462589 TGATGTGCATTTGGTATTATACATGT 57.537 30.769 2.69 2.69 0.00 3.21
529 530 9.566432 TGATGTGCATTTGGTATTATACATGTA 57.434 29.630 8.27 8.27 0.00 2.29
530 531 9.825972 GATGTGCATTTGGTATTATACATGTAC 57.174 33.333 7.96 12.14 31.02 2.90
531 532 7.856556 TGTGCATTTGGTATTATACATGTACG 58.143 34.615 7.96 0.00 32.12 3.67
532 533 7.496263 TGTGCATTTGGTATTATACATGTACGT 59.504 33.333 7.96 0.00 32.12 3.57
533 534 8.980610 GTGCATTTGGTATTATACATGTACGTA 58.019 33.333 7.96 0.00 0.00 3.57
534 535 8.980610 TGCATTTGGTATTATACATGTACGTAC 58.019 33.333 18.90 18.90 0.00 3.67
535 536 9.199982 GCATTTGGTATTATACATGTACGTACT 57.800 33.333 25.12 9.07 0.00 2.73
578 579 7.831753 TCAAAGTTTGTAATGTTTGACTTCCA 58.168 30.769 15.08 0.00 34.72 3.53
579 580 8.474025 TCAAAGTTTGTAATGTTTGACTTCCAT 58.526 29.630 15.08 0.00 34.72 3.41
580 581 9.743057 CAAAGTTTGTAATGTTTGACTTCCATA 57.257 29.630 7.48 0.00 32.65 2.74
596 597 9.474313 TGACTTCCATAAAAATTTATAGGCACT 57.526 29.630 0.00 0.00 46.37 4.40
611 612 4.481368 AGGCACTACGTTATGAAATGGA 57.519 40.909 0.00 0.00 36.02 3.41
612 613 4.442706 AGGCACTACGTTATGAAATGGAG 58.557 43.478 0.00 0.00 38.38 3.86
613 614 3.560068 GGCACTACGTTATGAAATGGAGG 59.440 47.826 0.00 0.00 36.94 4.30
614 615 3.002348 GCACTACGTTATGAAATGGAGGC 59.998 47.826 0.00 0.00 36.94 4.70
615 616 4.188462 CACTACGTTATGAAATGGAGGCA 58.812 43.478 0.00 0.00 36.94 4.75
616 617 4.034048 CACTACGTTATGAAATGGAGGCAC 59.966 45.833 0.00 0.00 36.94 5.01
682 683 7.707035 AGCAACATACTACTAACTTGTATGAGC 59.293 37.037 16.13 16.86 43.45 4.26
697 698 2.875786 GAGCGCAGTTAGATGCCGC 61.876 63.158 11.47 0.00 43.49 6.53
699 700 2.703409 CGCAGTTAGATGCCGCAC 59.297 61.111 0.00 0.00 43.49 5.34
730 747 4.708726 AAAATAGCATGAGCAAGTGACC 57.291 40.909 0.00 0.00 45.49 4.02
731 748 3.641434 AATAGCATGAGCAAGTGACCT 57.359 42.857 0.00 0.00 45.49 3.85
732 749 4.760530 AATAGCATGAGCAAGTGACCTA 57.239 40.909 0.00 0.00 45.49 3.08
751 768 7.385205 GTGACCTACTATATATTTGTGTGCAGG 59.615 40.741 0.00 0.00 0.00 4.85
810 827 2.050714 GCGCGCGCACCTACTATA 60.051 61.111 46.11 0.00 41.49 1.31
811 828 1.443872 GCGCGCGCACCTACTATAT 60.444 57.895 46.11 0.00 41.49 0.86
812 829 0.179181 GCGCGCGCACCTACTATATA 60.179 55.000 46.11 0.00 41.49 0.86
813 830 1.533338 GCGCGCGCACCTACTATATAT 60.533 52.381 46.11 0.00 41.49 0.86
814 831 2.793933 CGCGCGCACCTACTATATATT 58.206 47.619 32.61 0.00 0.00 1.28
815 832 3.176708 CGCGCGCACCTACTATATATTT 58.823 45.455 32.61 0.00 0.00 1.40
816 833 3.001070 CGCGCGCACCTACTATATATTTG 60.001 47.826 32.61 3.88 0.00 2.32
817 834 3.924686 GCGCGCACCTACTATATATTTGT 59.075 43.478 29.10 0.00 0.00 2.83
818 835 4.201589 GCGCGCACCTACTATATATTTGTG 60.202 45.833 29.10 0.00 0.00 3.33
819 836 4.921515 CGCGCACCTACTATATATTTGTGT 59.078 41.667 8.75 0.00 0.00 3.72
820 837 5.164090 CGCGCACCTACTATATATTTGTGTG 60.164 44.000 8.75 0.00 36.22 3.82
821 838 5.389516 GCGCACCTACTATATATTTGTGTGC 60.390 44.000 17.24 17.24 46.86 4.57
822 839 5.694458 CGCACCTACTATATATTTGTGTGCA 59.306 40.000 20.58 0.00 44.96 4.57
823 840 6.128822 CGCACCTACTATATATTTGTGTGCAG 60.129 42.308 20.58 14.59 44.96 4.41
824 841 6.147821 GCACCTACTATATATTTGTGTGCAGG 59.852 42.308 18.35 12.10 44.32 4.85
825 842 6.650807 CACCTACTATATATTTGTGTGCAGGG 59.349 42.308 0.00 0.00 0.00 4.45
826 843 6.557253 ACCTACTATATATTTGTGTGCAGGGA 59.443 38.462 0.00 0.00 0.00 4.20
827 844 7.099764 CCTACTATATATTTGTGTGCAGGGAG 58.900 42.308 0.00 0.00 0.00 4.30
828 845 5.308825 ACTATATATTTGTGTGCAGGGAGC 58.691 41.667 0.00 0.00 45.96 4.70
837 854 3.690745 GCAGGGAGCAGTGCATTT 58.309 55.556 19.20 0.00 44.79 2.32
838 855 1.969862 GCAGGGAGCAGTGCATTTT 59.030 52.632 19.20 0.00 44.79 1.82
839 856 0.108945 GCAGGGAGCAGTGCATTTTC 60.109 55.000 19.20 5.66 44.79 2.29
840 857 1.250328 CAGGGAGCAGTGCATTTTCA 58.750 50.000 19.20 0.00 0.00 2.69
841 858 1.822990 CAGGGAGCAGTGCATTTTCAT 59.177 47.619 19.20 0.00 0.00 2.57
842 859 2.097825 AGGGAGCAGTGCATTTTCATC 58.902 47.619 19.20 3.66 0.00 2.92
843 860 1.135721 GGGAGCAGTGCATTTTCATCC 59.864 52.381 19.20 13.08 0.00 3.51
844 861 1.820519 GGAGCAGTGCATTTTCATCCA 59.179 47.619 19.20 0.00 0.00 3.41
845 862 2.159282 GGAGCAGTGCATTTTCATCCAG 60.159 50.000 19.20 0.00 0.00 3.86
846 863 1.822990 AGCAGTGCATTTTCATCCAGG 59.177 47.619 19.20 0.00 0.00 4.45
847 864 1.738030 GCAGTGCATTTTCATCCAGGC 60.738 52.381 11.09 0.00 0.00 4.85
848 865 1.134907 CAGTGCATTTTCATCCAGGCC 60.135 52.381 0.00 0.00 0.00 5.19
849 866 0.179129 GTGCATTTTCATCCAGGCCG 60.179 55.000 0.00 0.00 0.00 6.13
850 867 1.321805 TGCATTTTCATCCAGGCCGG 61.322 55.000 0.00 0.00 0.00 6.13
858 875 2.198703 TCCAGGCCGGATCGAGAT 59.801 61.111 5.05 0.00 39.64 2.75
859 876 1.903890 TCCAGGCCGGATCGAGATC 60.904 63.158 5.05 4.58 39.64 2.75
860 877 2.256764 CAGGCCGGATCGAGATCG 59.743 66.667 5.05 0.00 38.69 3.69
869 886 4.888741 TCGAGATCGACAGCGCGC 62.889 66.667 26.66 26.66 44.22 6.86
883 900 2.050714 GCGCGCGCACCTACTATA 60.051 61.111 46.11 0.00 41.49 1.31
884 901 1.443872 GCGCGCGCACCTACTATAT 60.444 57.895 46.11 0.00 41.49 0.86
885 902 0.179181 GCGCGCGCACCTACTATATA 60.179 55.000 46.11 0.00 41.49 0.86
886 903 1.533338 GCGCGCGCACCTACTATATAT 60.533 52.381 46.11 0.00 41.49 0.86
887 904 2.793933 CGCGCGCACCTACTATATATT 58.206 47.619 32.61 0.00 0.00 1.28
888 905 3.176708 CGCGCGCACCTACTATATATTT 58.823 45.455 32.61 0.00 0.00 1.40
889 906 3.001070 CGCGCGCACCTACTATATATTTG 60.001 47.826 32.61 3.88 0.00 2.32
890 907 3.924686 GCGCGCACCTACTATATATTTGT 59.075 43.478 29.10 0.00 0.00 2.83
891 908 4.201589 GCGCGCACCTACTATATATTTGTG 60.202 45.833 29.10 0.00 0.00 3.33
892 909 4.921515 CGCGCACCTACTATATATTTGTGT 59.078 41.667 8.75 0.00 0.00 3.72
893 910 5.164090 CGCGCACCTACTATATATTTGTGTG 60.164 44.000 8.75 0.00 36.22 3.82
894 911 5.389516 GCGCACCTACTATATATTTGTGTGC 60.390 44.000 17.24 17.24 46.86 4.57
895 912 5.694458 CGCACCTACTATATATTTGTGTGCA 59.306 40.000 20.58 0.00 44.96 4.57
896 913 6.128822 CGCACCTACTATATATTTGTGTGCAG 60.129 42.308 20.58 14.59 44.96 4.41
897 914 6.147821 GCACCTACTATATATTTGTGTGCAGG 59.852 42.308 18.35 12.10 44.32 4.85
898 915 6.650807 CACCTACTATATATTTGTGTGCAGGG 59.349 42.308 0.00 0.00 0.00 4.45
899 916 6.557253 ACCTACTATATATTTGTGTGCAGGGA 59.443 38.462 0.00 0.00 0.00 4.20
900 917 7.099764 CCTACTATATATTTGTGTGCAGGGAG 58.900 42.308 0.00 0.00 0.00 4.30
901 918 5.308825 ACTATATATTTGTGTGCAGGGAGC 58.691 41.667 0.00 0.00 45.96 4.70
910 927 3.690745 GCAGGGAGCAGTGCATTT 58.309 55.556 19.20 0.00 44.79 2.32
911 928 1.969862 GCAGGGAGCAGTGCATTTT 59.030 52.632 19.20 0.00 44.79 1.82
912 929 0.108945 GCAGGGAGCAGTGCATTTTC 60.109 55.000 19.20 5.66 44.79 2.29
913 930 1.250328 CAGGGAGCAGTGCATTTTCA 58.750 50.000 19.20 0.00 0.00 2.69
914 931 1.822990 CAGGGAGCAGTGCATTTTCAT 59.177 47.619 19.20 0.00 0.00 2.57
915 932 2.097825 AGGGAGCAGTGCATTTTCATC 58.902 47.619 19.20 3.66 0.00 2.92
916 933 1.135721 GGGAGCAGTGCATTTTCATCC 59.864 52.381 19.20 13.08 0.00 3.51
917 934 1.820519 GGAGCAGTGCATTTTCATCCA 59.179 47.619 19.20 0.00 0.00 3.41
918 935 2.159282 GGAGCAGTGCATTTTCATCCAG 60.159 50.000 19.20 0.00 0.00 3.86
919 936 1.822990 AGCAGTGCATTTTCATCCAGG 59.177 47.619 19.20 0.00 0.00 4.45
920 937 1.738030 GCAGTGCATTTTCATCCAGGC 60.738 52.381 11.09 0.00 0.00 4.85
921 938 1.134907 CAGTGCATTTTCATCCAGGCC 60.135 52.381 0.00 0.00 0.00 5.19
922 939 0.179129 GTGCATTTTCATCCAGGCCG 60.179 55.000 0.00 0.00 0.00 6.13
923 940 1.321805 TGCATTTTCATCCAGGCCGG 61.322 55.000 0.00 0.00 0.00 6.13
931 948 2.198703 TCCAGGCCGGATCGAGAT 59.801 61.111 5.05 0.00 39.64 2.75
932 949 1.903890 TCCAGGCCGGATCGAGATC 60.904 63.158 5.05 4.58 39.64 2.75
933 950 2.256764 CAGGCCGGATCGAGATCG 59.743 66.667 5.05 0.00 38.69 3.69
942 959 4.888741 TCGAGATCGACAGCGCGC 62.889 66.667 26.66 26.66 44.22 6.86
973 990 2.418609 CGCACAGAGAGAGAGAGAGAGA 60.419 54.545 0.00 0.00 0.00 3.10
974 991 3.201290 GCACAGAGAGAGAGAGAGAGAG 58.799 54.545 0.00 0.00 0.00 3.20
975 992 3.118629 GCACAGAGAGAGAGAGAGAGAGA 60.119 52.174 0.00 0.00 0.00 3.10
976 993 4.691175 CACAGAGAGAGAGAGAGAGAGAG 58.309 52.174 0.00 0.00 0.00 3.20
977 994 4.403752 CACAGAGAGAGAGAGAGAGAGAGA 59.596 50.000 0.00 0.00 0.00 3.10
978 995 4.648762 ACAGAGAGAGAGAGAGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
979 996 4.892345 CAGAGAGAGAGAGAGAGAGAGAGA 59.108 50.000 0.00 0.00 0.00 3.10
980 997 5.009911 CAGAGAGAGAGAGAGAGAGAGAGAG 59.990 52.000 0.00 0.00 0.00 3.20
981 998 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
982 999 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
983 1000 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
984 1001 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
985 1002 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
986 1003 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
987 1004 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
988 1005 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
989 1006 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
990 1007 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
991 1008 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
992 1009 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
993 1010 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
994 1011 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
995 1012 3.640967 AGAGAGAGAGAGAGAGAGAGAGC 59.359 52.174 0.00 0.00 0.00 4.09
996 1013 3.378512 AGAGAGAGAGAGAGAGAGAGCA 58.621 50.000 0.00 0.00 0.00 4.26
997 1014 3.387374 AGAGAGAGAGAGAGAGAGAGCAG 59.613 52.174 0.00 0.00 0.00 4.24
998 1015 2.437281 AGAGAGAGAGAGAGAGAGCAGG 59.563 54.545 0.00 0.00 0.00 4.85
999 1016 2.171448 GAGAGAGAGAGAGAGAGCAGGT 59.829 54.545 0.00 0.00 0.00 4.00
1000 1017 3.384168 AGAGAGAGAGAGAGAGCAGGTA 58.616 50.000 0.00 0.00 0.00 3.08
1001 1018 3.976654 AGAGAGAGAGAGAGAGCAGGTAT 59.023 47.826 0.00 0.00 0.00 2.73
1002 1019 4.067896 GAGAGAGAGAGAGAGCAGGTATG 58.932 52.174 0.00 0.00 0.00 2.39
1003 1020 3.149196 GAGAGAGAGAGAGCAGGTATGG 58.851 54.545 0.00 0.00 0.00 2.74
1004 1021 1.613437 GAGAGAGAGAGCAGGTATGGC 59.387 57.143 0.00 0.00 0.00 4.40
1005 1022 0.313672 GAGAGAGAGCAGGTATGGCG 59.686 60.000 0.00 0.00 36.08 5.69
1006 1023 0.106469 AGAGAGAGCAGGTATGGCGA 60.106 55.000 0.00 0.00 36.08 5.54
1007 1024 0.031449 GAGAGAGCAGGTATGGCGAC 59.969 60.000 0.00 0.00 36.08 5.19
1008 1025 1.068250 GAGAGCAGGTATGGCGACC 59.932 63.158 0.19 0.19 40.08 4.79
1009 1026 1.676678 GAGAGCAGGTATGGCGACCA 61.677 60.000 10.65 1.01 42.47 4.02
1010 1027 1.227380 GAGCAGGTATGGCGACCAG 60.227 63.158 10.65 4.07 42.47 4.00
1011 1028 2.897350 GCAGGTATGGCGACCAGC 60.897 66.667 9.47 9.47 43.68 4.85
1032 1049 3.681835 ACGCTCCCTGTCGTGGAC 61.682 66.667 0.00 0.00 37.55 4.02
1033 1050 4.436998 CGCTCCCTGTCGTGGACC 62.437 72.222 0.00 0.00 0.00 4.46
1034 1051 2.997897 GCTCCCTGTCGTGGACCT 60.998 66.667 0.00 0.00 0.00 3.85
1035 1052 2.973899 CTCCCTGTCGTGGACCTG 59.026 66.667 0.00 0.00 0.00 4.00
1036 1053 2.603473 TCCCTGTCGTGGACCTGG 60.603 66.667 0.00 0.00 0.00 4.45
1037 1054 4.394712 CCCTGTCGTGGACCTGGC 62.395 72.222 0.00 0.00 0.00 4.85
1038 1055 4.742201 CCTGTCGTGGACCTGGCG 62.742 72.222 0.00 0.00 0.00 5.69
1044 1061 3.056328 GTGGACCTGGCGCCTTTC 61.056 66.667 29.70 19.82 0.00 2.62
1045 1062 3.249189 TGGACCTGGCGCCTTTCT 61.249 61.111 29.70 7.13 0.00 2.52
1046 1063 2.034221 GGACCTGGCGCCTTTCTT 59.966 61.111 29.70 7.19 0.00 2.52
1047 1064 2.041115 GGACCTGGCGCCTTTCTTC 61.041 63.158 29.70 15.83 0.00 2.87
1048 1065 1.302511 GACCTGGCGCCTTTCTTCA 60.303 57.895 29.70 3.67 0.00 3.02
1049 1066 1.578206 GACCTGGCGCCTTTCTTCAC 61.578 60.000 29.70 7.11 0.00 3.18
1050 1067 2.335712 CCTGGCGCCTTTCTTCACC 61.336 63.158 29.70 0.00 0.00 4.02
1051 1068 2.668212 TGGCGCCTTTCTTCACCG 60.668 61.111 29.70 0.00 0.00 4.94
1052 1069 3.431725 GGCGCCTTTCTTCACCGG 61.432 66.667 22.15 0.00 0.00 5.28
1053 1070 3.431725 GCGCCTTTCTTCACCGGG 61.432 66.667 6.32 0.00 0.00 5.73
1054 1071 2.746277 CGCCTTTCTTCACCGGGG 60.746 66.667 6.32 0.00 0.00 5.73
1055 1072 2.754375 GCCTTTCTTCACCGGGGA 59.246 61.111 0.00 0.00 0.00 4.81
1056 1073 1.303282 GCCTTTCTTCACCGGGGAT 59.697 57.895 7.56 0.00 0.00 3.85
1057 1074 1.032114 GCCTTTCTTCACCGGGGATG 61.032 60.000 7.56 11.04 0.00 3.51
1058 1075 0.618458 CCTTTCTTCACCGGGGATGA 59.382 55.000 17.88 17.88 0.00 2.92
1059 1076 1.407437 CCTTTCTTCACCGGGGATGAG 60.407 57.143 20.42 10.63 0.00 2.90
1060 1077 1.555075 CTTTCTTCACCGGGGATGAGA 59.445 52.381 20.42 16.00 0.00 3.27
1061 1078 1.195115 TTCTTCACCGGGGATGAGAG 58.805 55.000 20.42 9.51 0.00 3.20
1062 1079 1.144936 CTTCACCGGGGATGAGAGC 59.855 63.158 14.33 0.00 0.00 4.09
1063 1080 2.635229 CTTCACCGGGGATGAGAGCG 62.635 65.000 14.33 0.00 0.00 5.03
1064 1081 4.227134 CACCGGGGATGAGAGCGG 62.227 72.222 6.32 0.00 0.00 5.52
1067 1084 3.933722 CGGGGATGAGAGCGGCAT 61.934 66.667 1.45 0.00 0.00 4.40
1068 1085 2.281345 GGGGATGAGAGCGGCATG 60.281 66.667 1.45 0.00 0.00 4.06
1069 1086 2.281345 GGGATGAGAGCGGCATGG 60.281 66.667 1.45 0.00 0.00 3.66
1070 1087 2.976903 GGATGAGAGCGGCATGGC 60.977 66.667 9.69 9.69 0.00 4.40
1071 1088 2.976903 GATGAGAGCGGCATGGCC 60.977 66.667 14.46 6.66 46.75 5.36
1089 1106 4.170062 CGCGCCACTGAAGCCATG 62.170 66.667 0.00 0.00 0.00 3.66
1090 1107 4.487412 GCGCCACTGAAGCCATGC 62.487 66.667 0.00 0.00 0.00 4.06
1091 1108 4.170062 CGCCACTGAAGCCATGCG 62.170 66.667 0.00 0.00 35.81 4.73
1092 1109 4.487412 GCCACTGAAGCCATGCGC 62.487 66.667 0.00 0.00 37.98 6.09
1093 1110 4.170062 CCACTGAAGCCATGCGCG 62.170 66.667 0.00 0.00 44.76 6.86
1094 1111 3.120385 CACTGAAGCCATGCGCGA 61.120 61.111 12.10 0.00 44.76 5.87
1095 1112 2.816958 ACTGAAGCCATGCGCGAG 60.817 61.111 12.10 0.00 44.76 5.03
1096 1113 3.570638 CTGAAGCCATGCGCGAGG 61.571 66.667 12.10 13.10 44.76 4.63
1116 1133 4.947147 TGCCACACGCTGGGGTTC 62.947 66.667 7.89 0.00 44.72 3.62
1117 1134 4.643387 GCCACACGCTGGGGTTCT 62.643 66.667 7.89 0.00 44.72 3.01
1118 1135 2.113139 CCACACGCTGGGGTTCTT 59.887 61.111 0.00 0.00 35.79 2.52
1119 1136 1.966451 CCACACGCTGGGGTTCTTC 60.966 63.158 0.00 0.00 35.79 2.87
1120 1137 1.966451 CACACGCTGGGGTTCTTCC 60.966 63.158 0.00 0.00 0.00 3.46
1121 1138 2.742372 CACGCTGGGGTTCTTCCG 60.742 66.667 0.00 0.00 37.00 4.30
1122 1139 3.239253 ACGCTGGGGTTCTTCCGT 61.239 61.111 0.00 0.00 37.00 4.69
1123 1140 2.742372 CGCTGGGGTTCTTCCGTG 60.742 66.667 0.00 0.00 37.00 4.94
1124 1141 3.056328 GCTGGGGTTCTTCCGTGC 61.056 66.667 0.00 0.00 37.00 5.34
1125 1142 2.359975 CTGGGGTTCTTCCGTGCC 60.360 66.667 0.00 0.00 37.00 5.01
1126 1143 4.323477 TGGGGTTCTTCCGTGCCG 62.323 66.667 0.00 0.00 37.00 5.69
1127 1144 4.324991 GGGGTTCTTCCGTGCCGT 62.325 66.667 0.00 0.00 37.00 5.68
1128 1145 3.047877 GGGTTCTTCCGTGCCGTG 61.048 66.667 0.00 0.00 37.00 4.94
1129 1146 2.029964 GGTTCTTCCGTGCCGTGA 59.970 61.111 0.00 0.00 0.00 4.35
1130 1147 1.595929 GGTTCTTCCGTGCCGTGAA 60.596 57.895 0.00 0.00 0.00 3.18
1131 1148 1.568025 GTTCTTCCGTGCCGTGAAC 59.432 57.895 0.00 0.00 0.00 3.18
1132 1149 1.595929 TTCTTCCGTGCCGTGAACC 60.596 57.895 0.00 0.00 0.00 3.62
1133 1150 2.280524 CTTCCGTGCCGTGAACCA 60.281 61.111 0.00 0.00 0.00 3.67
1134 1151 1.671054 CTTCCGTGCCGTGAACCAT 60.671 57.895 0.00 0.00 0.00 3.55
1135 1152 1.911293 CTTCCGTGCCGTGAACCATG 61.911 60.000 0.00 0.00 0.00 3.66
1136 1153 3.430862 CCGTGCCGTGAACCATGG 61.431 66.667 11.19 11.19 42.95 3.66
1141 1158 2.491152 CCGTGAACCATGGCATGC 59.509 61.111 22.02 9.90 33.52 4.06
1142 1159 2.491152 CGTGAACCATGGCATGCC 59.509 61.111 30.54 30.54 0.00 4.40
1143 1160 2.894919 GTGAACCATGGCATGCCC 59.105 61.111 33.44 17.33 34.56 5.36
1144 1161 2.755064 TGAACCATGGCATGCCCG 60.755 61.111 33.44 23.51 35.87 6.13
1145 1162 4.211502 GAACCATGGCATGCCCGC 62.212 66.667 33.44 10.02 35.87 6.13
1370 1500 3.056328 GGCCGGTTTCAGGTCAGC 61.056 66.667 1.90 0.00 32.65 4.26
1402 1532 3.055963 TCCATGCAATACTTTTGCCTTGG 60.056 43.478 16.92 16.92 44.32 3.61
1405 1535 2.368221 TGCAATACTTTTGCCTTGGCTT 59.632 40.909 13.18 0.00 44.32 4.35
1474 1606 9.595823 CATGGATTGATCTTGAGCTTTAATTTT 57.404 29.630 0.00 0.00 0.00 1.82
1633 1765 0.456824 CGCTGCGCTACTTCTCTTCA 60.457 55.000 9.88 0.00 0.00 3.02
1714 1846 2.432628 GTCTTCCAGGACGGCGTG 60.433 66.667 21.19 3.34 33.14 5.34
2084 2633 2.280797 GGGCGTCAGTGTCAAGCA 60.281 61.111 0.00 0.00 0.00 3.91
2087 2641 1.160329 GGCGTCAGTGTCAAGCAGTT 61.160 55.000 0.00 0.00 0.00 3.16
2092 2646 3.063997 CGTCAGTGTCAAGCAGTTTCTTT 59.936 43.478 0.00 0.00 0.00 2.52
2094 2648 4.094887 GTCAGTGTCAAGCAGTTTCTTTGA 59.905 41.667 0.00 0.00 0.00 2.69
2099 2653 6.767902 AGTGTCAAGCAGTTTCTTTGATCTTA 59.232 34.615 0.00 0.00 0.00 2.10
2102 2656 8.632679 TGTCAAGCAGTTTCTTTGATCTTATTT 58.367 29.630 0.00 0.00 0.00 1.40
2143 2697 3.256879 TGTTGTTCCTTTGTGCAAAGTCA 59.743 39.130 19.41 13.64 44.66 3.41
2146 2700 2.860136 GTTCCTTTGTGCAAAGTCAAGC 59.140 45.455 19.41 6.87 44.66 4.01
2150 2704 2.645730 TTGTGCAAAGTCAAGCGTTT 57.354 40.000 0.00 0.00 0.00 3.60
2193 2793 4.633175 TGAGACACGTATTACCTTGCAAA 58.367 39.130 0.00 0.00 0.00 3.68
2289 2889 8.465999 TGTTGTGTTTCAAACTCATAGATGTTT 58.534 29.630 5.88 0.00 37.81 2.83
2290 2890 8.958043 GTTGTGTTTCAAACTCATAGATGTTTC 58.042 33.333 5.88 0.00 37.81 2.78
2291 2891 8.219546 TGTGTTTCAAACTCATAGATGTTTCA 57.780 30.769 1.10 0.00 34.60 2.69
2310 2910 8.142994 TGTTTCAGTATCTTTTCAGTTCTGTC 57.857 34.615 0.00 0.00 0.00 3.51
2324 2924 4.452455 CAGTTCTGTCATGTTGGTCCTTAC 59.548 45.833 0.00 0.00 0.00 2.34
2332 2932 2.828877 TGTTGGTCCTTACGTGACTTG 58.171 47.619 0.00 0.00 33.22 3.16
2335 2935 4.039488 TGTTGGTCCTTACGTGACTTGTAT 59.961 41.667 0.00 0.00 33.22 2.29
2409 3011 3.826157 TCAAGATTGGGCACAAGGTTTAG 59.174 43.478 7.78 0.00 40.49 1.85
2415 3017 0.888619 GGCACAAGGTTTAGGCCTTC 59.111 55.000 12.58 1.59 46.33 3.46
2443 3046 0.179000 CGGCTTCCTCCATTAGCTGT 59.821 55.000 0.00 0.00 36.70 4.40
2505 3108 0.743345 GACCCCTTATCGCGCAAACT 60.743 55.000 8.75 0.00 0.00 2.66
2516 3119 4.217754 TCGCGCAAACTTTTAAAGTGAT 57.782 36.364 11.35 1.03 41.91 3.06
2596 3199 0.311477 GCAAGGCCGAACGGTAAAAA 59.689 50.000 14.63 0.00 37.65 1.94
2872 3524 3.512329 TGCCAATTGTGCTCAATGAGATT 59.488 39.130 15.38 1.72 42.60 2.40
2899 3554 1.109323 AGCTGGTGTTGGGTTTGAGC 61.109 55.000 0.00 0.00 0.00 4.26
2982 3638 0.179084 ATGGCTACCGACATTGTCCG 60.179 55.000 11.12 7.35 34.37 4.79
2990 3646 2.638329 GACATTGTCCGAGTCGTCG 58.362 57.895 12.31 0.00 46.39 5.12
3053 3709 5.295431 TCAAATCCATTTACAACTCGCAG 57.705 39.130 0.00 0.00 0.00 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.127232 GCCGTCAAAAGCGCTGAC 60.127 61.111 12.58 14.81 39.89 3.51
8 9 3.711842 CGCCGTCAAAAGCGCTGA 61.712 61.111 12.58 0.95 46.50 4.26
32 33 0.843872 GTTTTTCGCTTGACGGCAAC 59.156 50.000 0.00 0.00 43.89 4.17
33 34 0.452184 TGTTTTTCGCTTGACGGCAA 59.548 45.000 2.36 2.36 43.89 4.52
34 35 0.248296 GTGTTTTTCGCTTGACGGCA 60.248 50.000 0.00 0.00 43.89 5.69
35 36 0.028902 AGTGTTTTTCGCTTGACGGC 59.971 50.000 0.00 0.00 43.89 5.68
36 37 1.741993 CAGTGTTTTTCGCTTGACGG 58.258 50.000 0.00 0.00 43.89 4.79
37 38 1.112459 GCAGTGTTTTTCGCTTGACG 58.888 50.000 0.00 0.00 45.62 4.35
38 39 1.202245 TGGCAGTGTTTTTCGCTTGAC 60.202 47.619 0.00 0.00 34.33 3.18
39 40 1.098869 TGGCAGTGTTTTTCGCTTGA 58.901 45.000 0.00 0.00 34.33 3.02
40 41 1.587946 GTTGGCAGTGTTTTTCGCTTG 59.412 47.619 0.00 0.00 34.33 4.01
41 42 1.797348 CGTTGGCAGTGTTTTTCGCTT 60.797 47.619 0.00 0.00 34.33 4.68
42 43 0.248458 CGTTGGCAGTGTTTTTCGCT 60.248 50.000 0.00 0.00 37.37 4.93
43 44 1.206115 CCGTTGGCAGTGTTTTTCGC 61.206 55.000 0.00 0.00 0.00 4.70
44 45 2.866688 CCGTTGGCAGTGTTTTTCG 58.133 52.632 0.00 0.00 0.00 3.46
62 63 0.529992 AGGCGTCGGCATAGTTTAGC 60.530 55.000 21.79 0.00 42.47 3.09
63 64 1.209128 CAGGCGTCGGCATAGTTTAG 58.791 55.000 21.79 0.00 42.47 1.85
64 65 0.179094 CCAGGCGTCGGCATAGTTTA 60.179 55.000 21.79 0.00 42.47 2.01
65 66 1.449601 CCAGGCGTCGGCATAGTTT 60.450 57.895 21.79 0.00 42.47 2.66
66 67 2.186903 CCAGGCGTCGGCATAGTT 59.813 61.111 21.79 0.00 42.47 2.24
118 119 1.811359 AGACCGTCGGCATAGTATAGC 59.189 52.381 12.28 0.00 0.00 2.97
119 120 3.072211 TCAGACCGTCGGCATAGTATAG 58.928 50.000 12.28 0.00 0.00 1.31
120 121 2.810274 GTCAGACCGTCGGCATAGTATA 59.190 50.000 12.28 0.00 0.00 1.47
121 122 1.607628 GTCAGACCGTCGGCATAGTAT 59.392 52.381 12.28 0.00 0.00 2.12
122 123 1.019673 GTCAGACCGTCGGCATAGTA 58.980 55.000 12.28 0.00 0.00 1.82
123 124 0.963856 TGTCAGACCGTCGGCATAGT 60.964 55.000 12.28 0.00 0.00 2.12
124 125 0.525668 GTGTCAGACCGTCGGCATAG 60.526 60.000 12.28 0.00 0.00 2.23
125 126 1.509463 GTGTCAGACCGTCGGCATA 59.491 57.895 12.28 0.00 0.00 3.14
126 127 2.261671 GTGTCAGACCGTCGGCAT 59.738 61.111 12.28 0.00 0.00 4.40
127 128 4.337060 CGTGTCAGACCGTCGGCA 62.337 66.667 12.28 0.00 0.00 5.69
128 129 4.034258 TCGTGTCAGACCGTCGGC 62.034 66.667 12.28 4.24 0.00 5.54
129 130 1.293963 TAGTCGTGTCAGACCGTCGG 61.294 60.000 10.48 10.48 41.83 4.79
130 131 0.179230 GTAGTCGTGTCAGACCGTCG 60.179 60.000 10.16 7.24 41.83 5.12
131 132 0.179230 CGTAGTCGTGTCAGACCGTC 60.179 60.000 10.16 6.12 41.83 4.79
132 133 1.864862 CGTAGTCGTGTCAGACCGT 59.135 57.895 10.16 0.00 41.83 4.83
133 134 1.511464 GCGTAGTCGTGTCAGACCG 60.511 63.158 0.00 1.60 41.83 4.79
134 135 0.454620 CAGCGTAGTCGTGTCAGACC 60.455 60.000 0.00 0.00 41.83 3.85
135 136 0.516001 TCAGCGTAGTCGTGTCAGAC 59.484 55.000 0.00 0.00 41.23 3.51
136 137 0.516001 GTCAGCGTAGTCGTGTCAGA 59.484 55.000 0.00 0.00 39.49 3.27
137 138 0.789753 CGTCAGCGTAGTCGTGTCAG 60.790 60.000 0.00 0.00 39.49 3.51
138 139 1.205820 CGTCAGCGTAGTCGTGTCA 59.794 57.895 0.00 0.00 39.49 3.58
139 140 4.038036 CGTCAGCGTAGTCGTGTC 57.962 61.111 0.00 0.00 39.49 3.67
149 150 1.271446 CGGCATAGATCACGTCAGCG 61.271 60.000 0.00 0.00 44.93 5.18
150 151 0.030773 TCGGCATAGATCACGTCAGC 59.969 55.000 0.00 0.00 0.00 4.26
151 152 1.759994 GTCGGCATAGATCACGTCAG 58.240 55.000 0.00 0.00 0.00 3.51
152 153 0.028902 CGTCGGCATAGATCACGTCA 59.971 55.000 0.00 0.00 0.00 4.35
153 154 0.660595 CCGTCGGCATAGATCACGTC 60.661 60.000 0.00 0.00 0.00 4.34
154 155 1.359117 CCGTCGGCATAGATCACGT 59.641 57.895 0.00 0.00 0.00 4.49
155 156 4.228451 CCGTCGGCATAGATCACG 57.772 61.111 0.00 0.00 0.00 4.35
183 184 1.000843 TCCCGTCGGCATTGATCTATG 59.999 52.381 12.18 12.18 0.00 2.23
184 185 1.338107 TCCCGTCGGCATTGATCTAT 58.662 50.000 5.50 0.00 0.00 1.98
185 186 1.116308 TTCCCGTCGGCATTGATCTA 58.884 50.000 5.50 0.00 0.00 1.98
186 187 0.251916 TTTCCCGTCGGCATTGATCT 59.748 50.000 5.50 0.00 0.00 2.75
187 188 1.002468 CATTTCCCGTCGGCATTGATC 60.002 52.381 5.50 0.00 0.00 2.92
188 189 1.024271 CATTTCCCGTCGGCATTGAT 58.976 50.000 5.50 0.00 0.00 2.57
189 190 0.035915 TCATTTCCCGTCGGCATTGA 60.036 50.000 5.50 4.16 0.00 2.57
190 191 0.098728 GTCATTTCCCGTCGGCATTG 59.901 55.000 5.50 1.77 0.00 2.82
191 192 1.029947 GGTCATTTCCCGTCGGCATT 61.030 55.000 5.50 0.00 0.00 3.56
192 193 1.451387 GGTCATTTCCCGTCGGCAT 60.451 57.895 5.50 0.00 0.00 4.40
193 194 1.259142 TAGGTCATTTCCCGTCGGCA 61.259 55.000 5.50 0.00 0.00 5.69
194 195 0.106149 ATAGGTCATTTCCCGTCGGC 59.894 55.000 5.50 0.00 0.00 5.54
195 196 1.865865 CATAGGTCATTTCCCGTCGG 58.134 55.000 3.60 3.60 0.00 4.79
196 197 1.217882 GCATAGGTCATTTCCCGTCG 58.782 55.000 0.00 0.00 0.00 5.12
197 198 2.325583 TGCATAGGTCATTTCCCGTC 57.674 50.000 0.00 0.00 0.00 4.79
198 199 3.244561 CCTATGCATAGGTCATTTCCCGT 60.245 47.826 35.50 0.00 43.95 5.28
199 200 3.338249 CCTATGCATAGGTCATTTCCCG 58.662 50.000 35.50 13.21 43.95 5.14
210 211 0.734253 GACTCGCGGCCTATGCATAG 60.734 60.000 24.33 24.33 40.13 2.23
211 212 1.179174 AGACTCGCGGCCTATGCATA 61.179 55.000 6.13 6.20 40.13 3.14
212 213 2.029666 GACTCGCGGCCTATGCAT 59.970 61.111 6.13 3.79 40.13 3.96
213 214 3.147595 AGACTCGCGGCCTATGCA 61.148 61.111 6.13 0.00 40.13 3.96
214 215 2.659897 CAGACTCGCGGCCTATGC 60.660 66.667 6.13 0.00 0.00 3.14
215 216 1.452953 TACCAGACTCGCGGCCTATG 61.453 60.000 6.13 0.00 0.00 2.23
216 217 1.152819 TACCAGACTCGCGGCCTAT 60.153 57.895 6.13 0.00 0.00 2.57
217 218 1.822613 CTACCAGACTCGCGGCCTA 60.823 63.158 6.13 0.00 0.00 3.93
218 219 3.141488 CTACCAGACTCGCGGCCT 61.141 66.667 6.13 0.00 0.00 5.19
219 220 3.450115 ACTACCAGACTCGCGGCC 61.450 66.667 6.13 0.00 0.00 6.13
220 221 2.202623 CACTACCAGACTCGCGGC 60.203 66.667 6.13 0.00 0.00 6.53
221 222 2.202623 GCACTACCAGACTCGCGG 60.203 66.667 6.13 0.00 0.00 6.46
222 223 2.202623 GGCACTACCAGACTCGCG 60.203 66.667 0.00 0.00 38.86 5.87
223 224 1.153745 CAGGCACTACCAGACTCGC 60.154 63.158 0.00 0.00 43.14 5.03
224 225 1.153745 GCAGGCACTACCAGACTCG 60.154 63.158 0.00 0.00 43.14 4.18
225 226 1.153745 CGCAGGCACTACCAGACTC 60.154 63.158 0.00 0.00 43.14 3.36
226 227 2.973899 CGCAGGCACTACCAGACT 59.026 61.111 0.00 0.00 43.14 3.24
227 228 2.788191 AAGCGCAGGCACTACCAGAC 62.788 60.000 11.47 0.00 43.14 3.51
228 229 2.507110 GAAGCGCAGGCACTACCAGA 62.507 60.000 11.47 0.00 43.14 3.86
229 230 2.046892 AAGCGCAGGCACTACCAG 60.047 61.111 11.47 0.00 43.14 4.00
230 231 2.047274 GAAGCGCAGGCACTACCA 60.047 61.111 11.47 0.00 43.14 3.25
231 232 2.552585 TACGAAGCGCAGGCACTACC 62.553 60.000 11.47 0.00 43.41 3.18
232 233 0.734942 TTACGAAGCGCAGGCACTAC 60.735 55.000 11.47 0.00 43.41 2.73
233 234 0.038067 TTTACGAAGCGCAGGCACTA 60.038 50.000 11.47 0.00 43.41 2.74
234 235 1.301401 TTTACGAAGCGCAGGCACT 60.301 52.632 11.47 0.00 43.41 4.40
235 236 1.154469 GTTTACGAAGCGCAGGCAC 60.154 57.895 11.47 0.00 43.41 5.01
236 237 1.160946 TTGTTTACGAAGCGCAGGCA 61.161 50.000 11.47 0.00 43.41 4.75
242 243 3.040099 CCCAACTTTTGTTTACGAAGCG 58.960 45.455 0.00 0.00 41.35 4.68
291 292 8.743714 TCACATACATACATGTCTGGATCTATC 58.256 37.037 14.93 0.00 41.97 2.08
299 300 4.740205 GTCGGTCACATACATACATGTCTG 59.260 45.833 0.00 5.48 41.97 3.51
315 316 3.709141 TGGATATTTCATCTGGTCGGTCA 59.291 43.478 0.00 0.00 0.00 4.02
318 319 4.005650 CCATGGATATTTCATCTGGTCGG 58.994 47.826 5.56 0.00 0.00 4.79
359 360 3.763557 ACATTGTGGAATGGAGGGATT 57.236 42.857 0.00 0.00 43.00 3.01
360 361 4.443978 CTACATTGTGGAATGGAGGGAT 57.556 45.455 0.00 0.00 44.23 3.85
361 362 3.931907 CTACATTGTGGAATGGAGGGA 57.068 47.619 0.00 0.00 44.23 4.20
365 366 2.308570 AGGCACTACATTGTGGAATGGA 59.691 45.455 7.20 0.00 43.00 3.41
366 367 2.726821 AGGCACTACATTGTGGAATGG 58.273 47.619 7.20 0.00 43.00 3.16
367 368 7.193461 ATCCATAGGCACTACATTGTGGAATG 61.193 42.308 7.20 0.00 44.88 2.67
368 369 5.163055 ATCCATAGGCACTACATTGTGGAAT 60.163 40.000 7.20 0.00 44.88 3.01
369 370 4.165950 ATCCATAGGCACTACATTGTGGAA 59.834 41.667 7.20 0.00 44.88 3.53
380 381 4.046286 TCCACAAAAATCCATAGGCACT 57.954 40.909 0.00 0.00 46.37 4.40
381 382 4.220602 ACTTCCACAAAAATCCATAGGCAC 59.779 41.667 0.00 0.00 0.00 5.01
382 383 4.415596 ACTTCCACAAAAATCCATAGGCA 58.584 39.130 0.00 0.00 0.00 4.75
383 384 4.462483 TGACTTCCACAAAAATCCATAGGC 59.538 41.667 0.00 0.00 0.00 3.93
384 385 5.945784 TCTGACTTCCACAAAAATCCATAGG 59.054 40.000 0.00 0.00 0.00 2.57
385 386 6.656693 AGTCTGACTTCCACAAAAATCCATAG 59.343 38.462 4.06 0.00 0.00 2.23
386 387 6.542821 AGTCTGACTTCCACAAAAATCCATA 58.457 36.000 4.06 0.00 0.00 2.74
387 388 5.388654 AGTCTGACTTCCACAAAAATCCAT 58.611 37.500 4.06 0.00 0.00 3.41
388 389 4.792068 AGTCTGACTTCCACAAAAATCCA 58.208 39.130 4.06 0.00 0.00 3.41
389 390 5.774498 AAGTCTGACTTCCACAAAAATCC 57.226 39.130 17.00 0.00 31.77 3.01
390 391 6.795399 TCAAAGTCTGACTTCCACAAAAATC 58.205 36.000 22.24 0.00 37.47 2.17
391 392 6.773976 TCAAAGTCTGACTTCCACAAAAAT 57.226 33.333 22.24 1.89 37.47 1.82
392 393 6.773976 ATCAAAGTCTGACTTCCACAAAAA 57.226 33.333 22.24 4.14 37.47 1.94
393 394 7.556275 AGTTATCAAAGTCTGACTTCCACAAAA 59.444 33.333 22.24 10.20 37.47 2.44
394 395 7.054124 AGTTATCAAAGTCTGACTTCCACAAA 58.946 34.615 22.24 11.11 37.47 2.83
395 396 6.591935 AGTTATCAAAGTCTGACTTCCACAA 58.408 36.000 22.24 12.04 37.47 3.33
396 397 6.174720 AGTTATCAAAGTCTGACTTCCACA 57.825 37.500 22.24 8.06 37.47 4.17
397 398 7.226720 TCAAAGTTATCAAAGTCTGACTTCCAC 59.773 37.037 22.24 14.00 37.47 4.02
398 399 7.226720 GTCAAAGTTATCAAAGTCTGACTTCCA 59.773 37.037 22.24 12.65 37.47 3.53
399 400 7.308049 GGTCAAAGTTATCAAAGTCTGACTTCC 60.308 40.741 22.24 11.02 37.47 3.46
400 401 7.226720 TGGTCAAAGTTATCAAAGTCTGACTTC 59.773 37.037 22.24 9.60 37.47 3.01
401 402 7.054124 TGGTCAAAGTTATCAAAGTCTGACTT 58.946 34.615 17.00 17.00 40.80 3.01
402 403 6.591935 TGGTCAAAGTTATCAAAGTCTGACT 58.408 36.000 4.06 4.06 36.69 3.41
403 404 6.861065 TGGTCAAAGTTATCAAAGTCTGAC 57.139 37.500 0.00 0.00 36.69 3.51
404 405 7.873719 TTTGGTCAAAGTTATCAAAGTCTGA 57.126 32.000 0.00 0.00 38.81 3.27
405 406 9.533253 AAATTTGGTCAAAGTTATCAAAGTCTG 57.467 29.630 7.25 0.00 36.91 3.51
421 422 9.793259 AGACTGTTTTCTCTATAAATTTGGTCA 57.207 29.630 0.00 0.00 0.00 4.02
435 436 9.303537 GGTGTTGTAGATATAGACTGTTTTCTC 57.696 37.037 0.00 0.00 0.00 2.87
436 437 8.812972 TGGTGTTGTAGATATAGACTGTTTTCT 58.187 33.333 0.00 0.00 0.00 2.52
437 438 8.997621 TGGTGTTGTAGATATAGACTGTTTTC 57.002 34.615 0.00 0.00 0.00 2.29
438 439 9.787435 TTTGGTGTTGTAGATATAGACTGTTTT 57.213 29.630 0.00 0.00 0.00 2.43
439 440 9.959721 ATTTGGTGTTGTAGATATAGACTGTTT 57.040 29.630 0.00 0.00 0.00 2.83
450 451 9.905713 AGAATGTACATATTTGGTGTTGTAGAT 57.094 29.630 9.21 0.00 31.99 1.98
451 452 9.161629 CAGAATGTACATATTTGGTGTTGTAGA 57.838 33.333 9.21 0.00 0.00 2.59
452 453 9.161629 TCAGAATGTACATATTTGGTGTTGTAG 57.838 33.333 9.21 0.00 37.40 2.74
453 454 9.508642 TTCAGAATGTACATATTTGGTGTTGTA 57.491 29.630 9.21 0.00 37.40 2.41
454 455 7.994425 TCAGAATGTACATATTTGGTGTTGT 57.006 32.000 9.21 0.00 37.40 3.32
455 456 9.689976 TTTTCAGAATGTACATATTTGGTGTTG 57.310 29.630 9.21 0.00 37.40 3.33
474 475 9.330063 GGACACATCATGAGTTATATTTTCAGA 57.670 33.333 0.09 0.00 0.00 3.27
475 476 9.112725 TGGACACATCATGAGTTATATTTTCAG 57.887 33.333 0.09 0.00 0.00 3.02
476 477 9.460019 TTGGACACATCATGAGTTATATTTTCA 57.540 29.630 0.09 0.00 0.00 2.69
479 480 9.631257 TCATTGGACACATCATGAGTTATATTT 57.369 29.630 0.09 0.00 0.00 1.40
480 481 9.803507 ATCATTGGACACATCATGAGTTATATT 57.196 29.630 0.09 0.00 0.00 1.28
481 482 9.227777 CATCATTGGACACATCATGAGTTATAT 57.772 33.333 0.09 0.00 0.00 0.86
482 483 8.212995 ACATCATTGGACACATCATGAGTTATA 58.787 33.333 0.09 0.00 0.00 0.98
483 484 7.012989 CACATCATTGGACACATCATGAGTTAT 59.987 37.037 0.09 0.00 0.00 1.89
484 485 6.316890 CACATCATTGGACACATCATGAGTTA 59.683 38.462 0.09 0.00 0.00 2.24
485 486 5.124936 CACATCATTGGACACATCATGAGTT 59.875 40.000 0.09 0.00 0.00 3.01
486 487 4.638865 CACATCATTGGACACATCATGAGT 59.361 41.667 0.09 0.00 0.00 3.41
487 488 4.497507 GCACATCATTGGACACATCATGAG 60.498 45.833 0.09 0.00 0.00 2.90
488 489 3.379057 GCACATCATTGGACACATCATGA 59.621 43.478 0.00 0.00 0.00 3.07
489 490 3.129638 TGCACATCATTGGACACATCATG 59.870 43.478 0.00 0.00 0.00 3.07
490 491 3.358118 TGCACATCATTGGACACATCAT 58.642 40.909 0.00 0.00 0.00 2.45
491 492 2.792878 TGCACATCATTGGACACATCA 58.207 42.857 0.00 0.00 0.00 3.07
492 493 4.380841 AATGCACATCATTGGACACATC 57.619 40.909 0.00 0.00 43.40 3.06
493 494 4.500127 CAAATGCACATCATTGGACACAT 58.500 39.130 0.00 0.00 44.23 3.21
494 495 3.306156 CCAAATGCACATCATTGGACACA 60.306 43.478 7.93 0.00 44.23 3.72
495 496 3.255725 CCAAATGCACATCATTGGACAC 58.744 45.455 7.93 0.00 44.23 3.67
496 497 2.898612 ACCAAATGCACATCATTGGACA 59.101 40.909 17.12 0.00 44.23 4.02
497 498 3.598019 ACCAAATGCACATCATTGGAC 57.402 42.857 17.12 0.00 44.23 4.02
498 499 5.936187 AATACCAAATGCACATCATTGGA 57.064 34.783 17.12 5.42 44.23 3.53
499 500 8.358895 TGTATAATACCAAATGCACATCATTGG 58.641 33.333 11.02 11.02 44.23 3.16
500 501 9.917129 ATGTATAATACCAAATGCACATCATTG 57.083 29.630 0.00 0.00 44.23 2.82
501 502 9.917129 CATGTATAATACCAAATGCACATCATT 57.083 29.630 0.00 0.00 46.82 2.57
502 503 9.081204 ACATGTATAATACCAAATGCACATCAT 57.919 29.630 0.00 0.00 36.87 2.45
503 504 8.462589 ACATGTATAATACCAAATGCACATCA 57.537 30.769 0.00 0.00 0.00 3.07
504 505 9.825972 GTACATGTATAATACCAAATGCACATC 57.174 33.333 9.18 0.00 0.00 3.06
505 506 8.503196 CGTACATGTATAATACCAAATGCACAT 58.497 33.333 9.18 0.00 0.00 3.21
506 507 7.496263 ACGTACATGTATAATACCAAATGCACA 59.504 33.333 9.18 0.00 0.00 4.57
507 508 7.857569 ACGTACATGTATAATACCAAATGCAC 58.142 34.615 9.18 0.00 0.00 4.57
508 509 8.980610 GTACGTACATGTATAATACCAAATGCA 58.019 33.333 20.67 0.00 0.00 3.96
509 510 9.199982 AGTACGTACATGTATAATACCAAATGC 57.800 33.333 26.55 0.00 0.00 3.56
547 548 9.691362 GTCAAACATTACAAACTTTGACCATAT 57.309 29.630 8.55 0.00 43.35 1.78
552 553 7.757624 TGGAAGTCAAACATTACAAACTTTGAC 59.242 33.333 8.55 12.19 46.84 3.18
553 554 7.831753 TGGAAGTCAAACATTACAAACTTTGA 58.168 30.769 8.55 0.00 31.68 2.69
554 555 8.647143 ATGGAAGTCAAACATTACAAACTTTG 57.353 30.769 0.00 0.00 0.00 2.77
570 571 9.474313 AGTGCCTATAAATTTTTATGGAAGTCA 57.526 29.630 0.00 0.00 34.64 3.41
573 574 9.878599 CGTAGTGCCTATAAATTTTTATGGAAG 57.121 33.333 0.00 0.00 34.64 3.46
574 575 9.398538 ACGTAGTGCCTATAAATTTTTATGGAA 57.601 29.630 0.00 0.21 42.51 3.53
575 576 8.967664 ACGTAGTGCCTATAAATTTTTATGGA 57.032 30.769 0.00 0.00 42.51 3.41
584 585 8.999431 CCATTTCATAACGTAGTGCCTATAAAT 58.001 33.333 0.00 0.00 45.00 1.40
585 586 8.205512 TCCATTTCATAACGTAGTGCCTATAAA 58.794 33.333 0.00 0.00 45.00 1.40
586 587 7.728148 TCCATTTCATAACGTAGTGCCTATAA 58.272 34.615 0.00 0.00 45.00 0.98
587 588 7.292713 TCCATTTCATAACGTAGTGCCTATA 57.707 36.000 0.00 0.00 45.00 1.31
588 589 6.169557 TCCATTTCATAACGTAGTGCCTAT 57.830 37.500 0.00 0.00 45.00 2.57
589 590 5.452776 CCTCCATTTCATAACGTAGTGCCTA 60.453 44.000 0.00 0.00 45.00 3.93
590 591 4.442706 CTCCATTTCATAACGTAGTGCCT 58.557 43.478 0.00 0.00 45.00 4.75
591 592 3.560068 CCTCCATTTCATAACGTAGTGCC 59.440 47.826 0.00 0.00 45.00 5.01
592 593 3.002348 GCCTCCATTTCATAACGTAGTGC 59.998 47.826 0.00 0.00 45.00 4.40
593 594 4.034048 GTGCCTCCATTTCATAACGTAGTG 59.966 45.833 0.00 0.00 45.00 2.74
595 596 4.442706 AGTGCCTCCATTTCATAACGTAG 58.557 43.478 0.00 0.00 0.00 3.51
596 597 4.481368 AGTGCCTCCATTTCATAACGTA 57.519 40.909 0.00 0.00 0.00 3.57
597 598 3.350219 AGTGCCTCCATTTCATAACGT 57.650 42.857 0.00 0.00 0.00 3.99
598 599 4.876107 AGTTAGTGCCTCCATTTCATAACG 59.124 41.667 0.00 0.00 0.00 3.18
599 600 5.066505 CCAGTTAGTGCCTCCATTTCATAAC 59.933 44.000 0.00 0.00 0.00 1.89
600 601 5.192927 CCAGTTAGTGCCTCCATTTCATAA 58.807 41.667 0.00 0.00 0.00 1.90
601 602 4.227300 ACCAGTTAGTGCCTCCATTTCATA 59.773 41.667 0.00 0.00 0.00 2.15
602 603 3.010584 ACCAGTTAGTGCCTCCATTTCAT 59.989 43.478 0.00 0.00 0.00 2.57
603 604 2.375174 ACCAGTTAGTGCCTCCATTTCA 59.625 45.455 0.00 0.00 0.00 2.69
604 605 3.073274 ACCAGTTAGTGCCTCCATTTC 57.927 47.619 0.00 0.00 0.00 2.17
605 606 3.157087 CAACCAGTTAGTGCCTCCATTT 58.843 45.455 0.00 0.00 0.00 2.32
606 607 2.795329 CAACCAGTTAGTGCCTCCATT 58.205 47.619 0.00 0.00 0.00 3.16
607 608 1.614317 GCAACCAGTTAGTGCCTCCAT 60.614 52.381 0.00 0.00 0.00 3.41
608 609 0.250727 GCAACCAGTTAGTGCCTCCA 60.251 55.000 0.00 0.00 0.00 3.86
609 610 1.298859 CGCAACCAGTTAGTGCCTCC 61.299 60.000 0.00 0.00 0.00 4.30
610 611 1.912371 GCGCAACCAGTTAGTGCCTC 61.912 60.000 0.30 0.00 32.93 4.70
611 612 1.966451 GCGCAACCAGTTAGTGCCT 60.966 57.895 0.30 0.00 32.93 4.75
612 613 2.561373 GCGCAACCAGTTAGTGCC 59.439 61.111 0.30 0.00 32.93 5.01
613 614 2.258013 TGGCGCAACCAGTTAGTGC 61.258 57.895 10.83 8.86 46.36 4.40
614 615 4.057224 TGGCGCAACCAGTTAGTG 57.943 55.556 10.83 0.00 46.36 2.74
682 683 2.703409 GTGCGGCATCTAACTGCG 59.297 61.111 5.72 0.00 43.23 5.18
697 698 3.181826 TGCTATTTTTCGTGCTTCGTG 57.818 42.857 2.39 0.00 40.80 4.35
699 700 4.002267 TCATGCTATTTTTCGTGCTTCG 57.998 40.909 0.00 0.00 41.41 3.79
730 747 6.591834 GCTCCCTGCACACAAATATATAGTAG 59.408 42.308 0.00 0.00 42.31 2.57
731 748 6.464222 GCTCCCTGCACACAAATATATAGTA 58.536 40.000 0.00 0.00 42.31 1.82
732 749 5.308825 GCTCCCTGCACACAAATATATAGT 58.691 41.667 0.00 0.00 42.31 2.12
751 768 1.820519 TGGATGAAAATGCACTGCTCC 59.179 47.619 1.98 0.00 0.00 4.70
803 820 6.591834 GCTCCCTGCACACAAATATATAGTAG 59.408 42.308 0.00 0.00 42.31 2.57
804 821 6.464222 GCTCCCTGCACACAAATATATAGTA 58.536 40.000 0.00 0.00 42.31 1.82
820 837 0.108945 GAAAATGCACTGCTCCCTGC 60.109 55.000 1.98 0.00 43.25 4.85
821 838 1.250328 TGAAAATGCACTGCTCCCTG 58.750 50.000 1.98 0.00 0.00 4.45
822 839 2.097825 GATGAAAATGCACTGCTCCCT 58.902 47.619 1.98 0.00 0.00 4.20
823 840 1.135721 GGATGAAAATGCACTGCTCCC 59.864 52.381 1.98 0.00 0.00 4.30
824 841 1.820519 TGGATGAAAATGCACTGCTCC 59.179 47.619 1.98 0.00 0.00 4.70
825 842 2.159282 CCTGGATGAAAATGCACTGCTC 60.159 50.000 1.98 0.00 0.00 4.26
826 843 1.822990 CCTGGATGAAAATGCACTGCT 59.177 47.619 1.98 0.00 0.00 4.24
827 844 1.738030 GCCTGGATGAAAATGCACTGC 60.738 52.381 0.00 0.00 0.00 4.40
828 845 1.134907 GGCCTGGATGAAAATGCACTG 60.135 52.381 0.00 0.00 0.00 3.66
829 846 1.188863 GGCCTGGATGAAAATGCACT 58.811 50.000 0.00 0.00 0.00 4.40
830 847 0.179129 CGGCCTGGATGAAAATGCAC 60.179 55.000 0.00 0.00 0.00 4.57
831 848 1.321805 CCGGCCTGGATGAAAATGCA 61.322 55.000 7.77 0.00 42.00 3.96
832 849 1.037030 TCCGGCCTGGATGAAAATGC 61.037 55.000 11.66 0.00 43.74 3.56
833 850 3.189568 TCCGGCCTGGATGAAAATG 57.810 52.632 11.66 0.00 43.74 2.32
842 859 2.653702 GATCTCGATCCGGCCTGG 59.346 66.667 0.00 3.90 40.09 4.45
843 860 2.256764 CGATCTCGATCCGGCCTG 59.743 66.667 0.00 0.00 43.02 4.85
844 861 2.113351 TCGATCTCGATCCGGCCT 59.887 61.111 0.00 0.00 44.22 5.19
865 882 3.751017 TATATAGTAGGTGCGCGCGCG 62.751 57.143 45.73 45.73 45.51 6.86
866 883 0.179181 TATATAGTAGGTGCGCGCGC 60.179 55.000 45.02 45.02 42.35 6.86
867 884 2.470196 ATATATAGTAGGTGCGCGCG 57.530 50.000 28.44 28.44 0.00 6.86
868 885 3.924686 ACAAATATATAGTAGGTGCGCGC 59.075 43.478 27.26 27.26 0.00 6.86
869 886 4.921515 ACACAAATATATAGTAGGTGCGCG 59.078 41.667 0.00 0.00 0.00 6.86
870 887 5.389516 GCACACAAATATATAGTAGGTGCGC 60.390 44.000 14.01 0.00 39.52 6.09
871 888 6.153212 GCACACAAATATATAGTAGGTGCG 57.847 41.667 14.01 7.74 39.52 5.34
872 889 6.147821 CCTGCACACAAATATATAGTAGGTGC 59.852 42.308 18.79 18.79 46.67 5.01
873 890 6.650807 CCCTGCACACAAATATATAGTAGGTG 59.349 42.308 11.26 11.26 0.00 4.00
874 891 6.557253 TCCCTGCACACAAATATATAGTAGGT 59.443 38.462 0.00 0.00 0.00 3.08
875 892 7.004555 TCCCTGCACACAAATATATAGTAGG 57.995 40.000 0.00 0.00 0.00 3.18
876 893 6.591834 GCTCCCTGCACACAAATATATAGTAG 59.408 42.308 0.00 0.00 42.31 2.57
877 894 6.464222 GCTCCCTGCACACAAATATATAGTA 58.536 40.000 0.00 0.00 42.31 1.82
878 895 5.308825 GCTCCCTGCACACAAATATATAGT 58.691 41.667 0.00 0.00 42.31 2.12
879 896 5.869753 GCTCCCTGCACACAAATATATAG 57.130 43.478 0.00 0.00 42.31 1.31
893 910 0.108945 GAAAATGCACTGCTCCCTGC 60.109 55.000 1.98 0.00 43.25 4.85
894 911 1.250328 TGAAAATGCACTGCTCCCTG 58.750 50.000 1.98 0.00 0.00 4.45
895 912 2.097825 GATGAAAATGCACTGCTCCCT 58.902 47.619 1.98 0.00 0.00 4.20
896 913 1.135721 GGATGAAAATGCACTGCTCCC 59.864 52.381 1.98 0.00 0.00 4.30
897 914 1.820519 TGGATGAAAATGCACTGCTCC 59.179 47.619 1.98 0.00 0.00 4.70
898 915 2.159282 CCTGGATGAAAATGCACTGCTC 60.159 50.000 1.98 0.00 0.00 4.26
899 916 1.822990 CCTGGATGAAAATGCACTGCT 59.177 47.619 1.98 0.00 0.00 4.24
900 917 1.738030 GCCTGGATGAAAATGCACTGC 60.738 52.381 0.00 0.00 0.00 4.40
901 918 1.134907 GGCCTGGATGAAAATGCACTG 60.135 52.381 0.00 0.00 0.00 3.66
902 919 1.188863 GGCCTGGATGAAAATGCACT 58.811 50.000 0.00 0.00 0.00 4.40
903 920 0.179129 CGGCCTGGATGAAAATGCAC 60.179 55.000 0.00 0.00 0.00 4.57
904 921 1.321805 CCGGCCTGGATGAAAATGCA 61.322 55.000 7.77 0.00 42.00 3.96
905 922 1.037030 TCCGGCCTGGATGAAAATGC 61.037 55.000 11.66 0.00 43.74 3.56
906 923 3.189568 TCCGGCCTGGATGAAAATG 57.810 52.632 11.66 0.00 43.74 2.32
915 932 2.653702 GATCTCGATCCGGCCTGG 59.346 66.667 0.00 3.90 40.09 4.45
916 933 2.256764 CGATCTCGATCCGGCCTG 59.743 66.667 0.00 0.00 43.02 4.85
917 934 2.113351 TCGATCTCGATCCGGCCT 59.887 61.111 0.00 0.00 44.22 5.19
944 961 2.652079 CTCTCTGTGCGTGTGTGCG 61.652 63.158 0.00 0.00 37.81 5.34
945 962 1.280886 CTCTCTCTGTGCGTGTGTGC 61.281 60.000 0.00 0.00 0.00 4.57
953 970 3.118629 TCTCTCTCTCTCTCTCTCTGTGC 60.119 52.174 0.00 0.00 0.00 4.57
973 990 3.640967 GCTCTCTCTCTCTCTCTCTCTCT 59.359 52.174 0.00 0.00 0.00 3.10
974 991 3.386078 TGCTCTCTCTCTCTCTCTCTCTC 59.614 52.174 0.00 0.00 0.00 3.20
975 992 3.378512 TGCTCTCTCTCTCTCTCTCTCT 58.621 50.000 0.00 0.00 0.00 3.10
976 993 3.494048 CCTGCTCTCTCTCTCTCTCTCTC 60.494 56.522 0.00 0.00 0.00 3.20
977 994 2.437281 CCTGCTCTCTCTCTCTCTCTCT 59.563 54.545 0.00 0.00 0.00 3.10
978 995 2.171448 ACCTGCTCTCTCTCTCTCTCTC 59.829 54.545 0.00 0.00 0.00 3.20
979 996 2.200081 ACCTGCTCTCTCTCTCTCTCT 58.800 52.381 0.00 0.00 0.00 3.10
980 997 2.717639 ACCTGCTCTCTCTCTCTCTC 57.282 55.000 0.00 0.00 0.00 3.20
981 998 3.181440 CCATACCTGCTCTCTCTCTCTCT 60.181 52.174 0.00 0.00 0.00 3.10
982 999 3.149196 CCATACCTGCTCTCTCTCTCTC 58.851 54.545 0.00 0.00 0.00 3.20
983 1000 2.752829 GCCATACCTGCTCTCTCTCTCT 60.753 54.545 0.00 0.00 0.00 3.10
984 1001 1.613437 GCCATACCTGCTCTCTCTCTC 59.387 57.143 0.00 0.00 0.00 3.20
985 1002 1.703411 GCCATACCTGCTCTCTCTCT 58.297 55.000 0.00 0.00 0.00 3.10
986 1003 0.313672 CGCCATACCTGCTCTCTCTC 59.686 60.000 0.00 0.00 0.00 3.20
987 1004 0.106469 TCGCCATACCTGCTCTCTCT 60.106 55.000 0.00 0.00 0.00 3.10
988 1005 0.031449 GTCGCCATACCTGCTCTCTC 59.969 60.000 0.00 0.00 0.00 3.20
989 1006 1.395826 GGTCGCCATACCTGCTCTCT 61.396 60.000 0.00 0.00 36.53 3.10
990 1007 1.068250 GGTCGCCATACCTGCTCTC 59.932 63.158 0.00 0.00 36.53 3.20
991 1008 1.680522 CTGGTCGCCATACCTGCTCT 61.681 60.000 0.00 0.00 40.44 4.09
992 1009 1.227380 CTGGTCGCCATACCTGCTC 60.227 63.158 0.00 0.00 40.44 4.26
993 1010 2.903357 CTGGTCGCCATACCTGCT 59.097 61.111 0.00 0.00 40.44 4.24
995 1012 2.586079 CGCTGGTCGCCATACCTG 60.586 66.667 0.00 0.00 40.44 4.00
996 1013 3.849951 CCGCTGGTCGCCATACCT 61.850 66.667 0.00 0.00 40.44 3.08
998 1015 4.830765 TGCCGCTGGTCGCCATAC 62.831 66.667 0.00 0.00 36.73 2.39
999 1016 4.830765 GTGCCGCTGGTCGCCATA 62.831 66.667 0.00 0.00 36.73 2.74
1015 1032 3.681835 GTCCACGACAGGGAGCGT 61.682 66.667 0.00 0.00 42.11 5.07
1016 1033 4.436998 GGTCCACGACAGGGAGCG 62.437 72.222 0.00 0.00 42.40 5.03
1018 1035 2.650116 CCAGGTCCACGACAGGGAG 61.650 68.421 0.00 0.00 34.44 4.30
1019 1036 2.603473 CCAGGTCCACGACAGGGA 60.603 66.667 0.00 0.00 33.68 4.20
1020 1037 4.394712 GCCAGGTCCACGACAGGG 62.395 72.222 0.00 1.94 33.68 4.45
1021 1038 4.742201 CGCCAGGTCCACGACAGG 62.742 72.222 0.00 0.00 33.68 4.00
1027 1044 3.056328 GAAAGGCGCCAGGTCCAC 61.056 66.667 31.54 8.57 0.00 4.02
1028 1045 2.748058 GAAGAAAGGCGCCAGGTCCA 62.748 60.000 31.54 0.00 0.00 4.02
1029 1046 2.034221 AAGAAAGGCGCCAGGTCC 59.966 61.111 31.54 12.61 0.00 4.46
1030 1047 1.302511 TGAAGAAAGGCGCCAGGTC 60.303 57.895 31.54 21.67 0.00 3.85
1031 1048 1.600916 GTGAAGAAAGGCGCCAGGT 60.601 57.895 31.54 13.42 0.00 4.00
1032 1049 2.335712 GGTGAAGAAAGGCGCCAGG 61.336 63.158 31.54 0.00 34.84 4.45
1033 1050 2.680913 CGGTGAAGAAAGGCGCCAG 61.681 63.158 31.54 2.21 34.38 4.85
1034 1051 2.668212 CGGTGAAGAAAGGCGCCA 60.668 61.111 31.54 1.71 34.38 5.69
1035 1052 3.431725 CCGGTGAAGAAAGGCGCC 61.432 66.667 21.89 21.89 0.00 6.53
1036 1053 3.431725 CCCGGTGAAGAAAGGCGC 61.432 66.667 0.00 0.00 0.00 6.53
1037 1054 2.536997 ATCCCCGGTGAAGAAAGGCG 62.537 60.000 0.00 0.00 0.00 5.52
1038 1055 1.032114 CATCCCCGGTGAAGAAAGGC 61.032 60.000 0.00 0.00 0.00 4.35
1039 1056 0.618458 TCATCCCCGGTGAAGAAAGG 59.382 55.000 0.00 0.00 0.00 3.11
1040 1057 1.555075 TCTCATCCCCGGTGAAGAAAG 59.445 52.381 0.00 0.00 0.00 2.62
1041 1058 1.555075 CTCTCATCCCCGGTGAAGAAA 59.445 52.381 0.00 0.00 0.00 2.52
1042 1059 1.195115 CTCTCATCCCCGGTGAAGAA 58.805 55.000 0.00 0.00 0.00 2.52
1043 1060 1.330655 GCTCTCATCCCCGGTGAAGA 61.331 60.000 0.00 0.00 0.00 2.87
1044 1061 1.144936 GCTCTCATCCCCGGTGAAG 59.855 63.158 0.00 0.00 0.00 3.02
1045 1062 2.721167 CGCTCTCATCCCCGGTGAA 61.721 63.158 0.00 0.00 0.00 3.18
1046 1063 3.147595 CGCTCTCATCCCCGGTGA 61.148 66.667 0.00 0.00 0.00 4.02
1047 1064 4.227134 CCGCTCTCATCCCCGGTG 62.227 72.222 0.00 0.00 36.18 4.94
1050 1067 3.933722 ATGCCGCTCTCATCCCCG 61.934 66.667 0.00 0.00 0.00 5.73
1051 1068 2.281345 CATGCCGCTCTCATCCCC 60.281 66.667 0.00 0.00 0.00 4.81
1052 1069 2.281345 CCATGCCGCTCTCATCCC 60.281 66.667 0.00 0.00 0.00 3.85
1053 1070 2.976903 GCCATGCCGCTCTCATCC 60.977 66.667 0.00 0.00 0.00 3.51
1054 1071 2.976903 GGCCATGCCGCTCTCATC 60.977 66.667 0.00 0.00 39.62 2.92
1072 1089 4.170062 CATGGCTTCAGTGGCGCG 62.170 66.667 0.00 0.00 35.06 6.86
1073 1090 4.487412 GCATGGCTTCAGTGGCGC 62.487 66.667 0.00 0.00 35.06 6.53
1074 1091 4.170062 CGCATGGCTTCAGTGGCG 62.170 66.667 0.00 0.00 34.75 5.69
1075 1092 4.487412 GCGCATGGCTTCAGTGGC 62.487 66.667 0.30 0.00 39.11 5.01
1076 1093 4.170062 CGCGCATGGCTTCAGTGG 62.170 66.667 8.75 0.00 40.44 4.00
1077 1094 3.092192 CTCGCGCATGGCTTCAGTG 62.092 63.158 8.75 0.00 40.44 3.66
1078 1095 2.816958 CTCGCGCATGGCTTCAGT 60.817 61.111 8.75 0.00 40.44 3.41
1079 1096 3.570638 CCTCGCGCATGGCTTCAG 61.571 66.667 8.75 0.00 40.44 3.02
1099 1116 4.947147 GAACCCCAGCGTGTGGCA 62.947 66.667 0.61 0.00 46.45 4.92
1100 1117 4.643387 AGAACCCCAGCGTGTGGC 62.643 66.667 0.61 0.00 46.45 5.01
1102 1119 1.966451 GGAAGAACCCCAGCGTGTG 60.966 63.158 0.00 0.00 0.00 3.82
1103 1120 2.430367 GGAAGAACCCCAGCGTGT 59.570 61.111 0.00 0.00 0.00 4.49
1104 1121 2.742372 CGGAAGAACCCCAGCGTG 60.742 66.667 0.00 0.00 34.64 5.34
1105 1122 3.239253 ACGGAAGAACCCCAGCGT 61.239 61.111 0.00 0.00 34.64 5.07
1106 1123 2.742372 CACGGAAGAACCCCAGCG 60.742 66.667 0.00 0.00 34.64 5.18
1107 1124 3.056328 GCACGGAAGAACCCCAGC 61.056 66.667 0.00 0.00 34.64 4.85
1108 1125 2.359975 GGCACGGAAGAACCCCAG 60.360 66.667 0.00 0.00 34.64 4.45
1123 1140 2.491152 CATGCCATGGTTCACGGC 59.509 61.111 14.67 0.00 46.43 5.68
1124 1141 2.491152 GCATGCCATGGTTCACGG 59.509 61.111 14.67 1.38 0.00 4.94
1125 1142 2.491152 GGCATGCCATGGTTCACG 59.509 61.111 32.08 0.00 35.81 4.35
1126 1143 2.894919 GGGCATGCCATGGTTCAC 59.105 61.111 36.56 14.15 37.98 3.18
1127 1144 2.755064 CGGGCATGCCATGGTTCA 60.755 61.111 36.56 3.77 37.98 3.18
1128 1145 4.211502 GCGGGCATGCCATGGTTC 62.212 66.667 36.56 17.93 37.98 3.62
1137 1154 4.923942 ATCAGCTCCGCGGGCATG 62.924 66.667 31.19 25.40 0.00 4.06
1138 1155 4.923942 CATCAGCTCCGCGGGCAT 62.924 66.667 31.19 18.89 0.00 4.40
1140 1157 4.838152 TTCATCAGCTCCGCGGGC 62.838 66.667 27.83 26.36 0.00 6.13
1141 1158 2.587194 CTTCATCAGCTCCGCGGG 60.587 66.667 27.83 17.41 0.00 6.13
1142 1159 3.267860 GCTTCATCAGCTCCGCGG 61.268 66.667 22.12 22.12 46.27 6.46
1168 1185 2.617274 AAAAAGCGGCCGACAGCTC 61.617 57.895 33.48 10.20 43.78 4.09
1169 1186 2.594592 AAAAAGCGGCCGACAGCT 60.595 55.556 33.48 14.20 46.97 4.24
1370 1500 8.706035 CAAAAGTATTGCATGGAAGAAAGAAAG 58.294 33.333 5.69 0.00 0.00 2.62
1402 1532 2.440539 TTCTCGTCTCTGGTTGAAGC 57.559 50.000 0.00 0.00 0.00 3.86
1405 1535 3.826729 TCTCATTTCTCGTCTCTGGTTGA 59.173 43.478 0.00 0.00 0.00 3.18
1474 1606 2.169352 GCACTCCTCCATTGCTTCTCTA 59.831 50.000 0.00 0.00 33.26 2.43
1633 1765 3.426836 TCCCCCTCCCTCGACGAT 61.427 66.667 0.00 0.00 0.00 3.73
2112 2666 5.635700 GCACAAAGGAACAACAACTAACAAA 59.364 36.000 0.00 0.00 0.00 2.83
2115 2669 4.739195 TGCACAAAGGAACAACAACTAAC 58.261 39.130 0.00 0.00 0.00 2.34
2118 2672 3.951775 TTGCACAAAGGAACAACAACT 57.048 38.095 0.00 0.00 0.00 3.16
2244 2844 4.481930 ACATGAACGAATCTCGCAAAAA 57.518 36.364 0.00 0.00 45.12 1.94
2245 2845 4.218265 CAACATGAACGAATCTCGCAAAA 58.782 39.130 0.00 0.00 45.12 2.44
2262 2862 8.169977 ACATCTATGAGTTTGAAACACAACAT 57.830 30.769 11.90 11.90 38.29 2.71
2289 2889 7.445121 ACATGACAGAACTGAAAAGATACTGA 58.555 34.615 8.87 0.00 0.00 3.41
2290 2890 7.664082 ACATGACAGAACTGAAAAGATACTG 57.336 36.000 8.87 0.00 0.00 2.74
2291 2891 7.173907 CCAACATGACAGAACTGAAAAGATACT 59.826 37.037 8.87 0.00 0.00 2.12
2301 2901 3.131709 AGGACCAACATGACAGAACTG 57.868 47.619 0.00 0.00 0.00 3.16
2310 2910 3.040147 AGTCACGTAAGGACCAACATG 57.960 47.619 0.00 0.00 46.39 3.21
2382 2983 2.885135 TGTGCCCAATCTTGATGACT 57.115 45.000 0.00 0.00 0.00 3.41
2422 3024 0.466124 AGCTAATGGAGGAAGCCGTC 59.534 55.000 0.00 0.00 36.92 4.79
2431 3034 2.801342 GCCGAGAAGACAGCTAATGGAG 60.801 54.545 0.00 0.00 0.00 3.86
2443 3046 4.202326 GGTTTATCCCATAAGCCGAGAAGA 60.202 45.833 0.00 0.00 36.58 2.87
2505 3108 5.652891 TGCGGCCCTTATAATCACTTTAAAA 59.347 36.000 0.00 0.00 0.00 1.52
2516 3119 1.282447 TGTTTCCTGCGGCCCTTATAA 59.718 47.619 0.00 0.00 0.00 0.98
2596 3199 3.835378 AACGACGTGTTTTGAGGTTTT 57.165 38.095 0.00 0.00 37.59 2.43
2872 3524 1.102809 CCAACACCAGCTTCTGCACA 61.103 55.000 0.00 0.00 42.74 4.57
2899 3554 3.886123 AGACATACCGGGAAATTGAAGG 58.114 45.455 6.32 0.00 0.00 3.46
2982 3638 2.783935 GTCCTCGTCCGACGACTC 59.216 66.667 19.51 9.06 46.73 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.