Multiple sequence alignment - TraesCS3D01G074100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G074100 chr3D 100.000 3086 0 0 1 3086 34689220 34692305 0.000000e+00 5699.0
1 TraesCS3D01G074100 chr3D 77.005 374 59 22 2719 3083 350106173 350105818 4.060000e-44 189.0
2 TraesCS3D01G074100 chr3D 81.250 240 26 11 2858 3084 431626858 431626625 3.160000e-40 176.0
3 TraesCS3D01G074100 chr3B 92.932 2292 89 15 1 2272 56751334 56749096 0.000000e+00 3267.0
4 TraesCS3D01G074100 chr3B 85.783 626 70 11 1 610 631965228 631965850 0.000000e+00 645.0
5 TraesCS3D01G074100 chr3B 89.844 384 27 7 2697 3069 56746053 56745671 1.660000e-132 483.0
6 TraesCS3D01G074100 chr3B 88.889 387 27 7 2697 3069 56736828 56736444 2.170000e-126 462.0
7 TraesCS3D01G074100 chr3B 94.167 120 7 0 2584 2703 56749100 56748981 1.890000e-42 183.0
8 TraesCS3D01G074100 chr3B 80.608 263 28 14 2664 2907 792714231 792713973 6.800000e-42 182.0
9 TraesCS3D01G074100 chr3A 91.435 1261 96 9 850 2109 477320894 477319645 0.000000e+00 1720.0
10 TraesCS3D01G074100 chr3A 92.500 240 16 2 1871 2109 477314324 477314086 2.950000e-90 342.0
11 TraesCS3D01G074100 chr2B 88.633 607 62 3 10 610 105807014 105806409 0.000000e+00 732.0
12 TraesCS3D01G074100 chr6D 86.851 616 63 8 1 610 337844023 337843420 0.000000e+00 673.0
13 TraesCS3D01G074100 chr6D 78.899 436 66 18 2665 3083 30302010 30301584 3.920000e-69 272.0
14 TraesCS3D01G074100 chr6D 89.873 158 16 0 2492 2649 61766532 61766689 1.450000e-48 204.0
15 TraesCS3D01G074100 chr6D 80.749 187 21 11 2858 3032 447401698 447401881 6.940000e-27 132.0
16 TraesCS3D01G074100 chr6D 89.831 59 6 0 2496 2554 129159076 129159134 3.300000e-10 76.8
17 TraesCS3D01G074100 chr5A 86.422 626 68 9 1 610 625908822 625908198 0.000000e+00 669.0
18 TraesCS3D01G074100 chr4D 86.504 615 65 7 12 610 442615928 442616540 0.000000e+00 660.0
19 TraesCS3D01G074100 chr7D 88.036 560 62 2 1 556 45658519 45657961 0.000000e+00 658.0
20 TraesCS3D01G074100 chr7D 92.308 65 3 1 548 610 45657749 45657685 1.180000e-14 91.6
21 TraesCS3D01G074100 chr7D 95.349 43 2 0 2719 2761 400854893 400854851 5.520000e-08 69.4
22 TraesCS3D01G074100 chr7A 85.847 537 64 3 1 526 579816220 579816755 7.470000e-156 560.0
23 TraesCS3D01G074100 chr7A 92.308 91 5 1 522 610 579839335 579839425 8.980000e-26 128.0
24 TraesCS3D01G074100 chr7B 86.984 315 33 7 299 610 590100894 590100585 6.330000e-92 348.0
25 TraesCS3D01G074100 chr7B 79.167 432 58 23 2666 3078 456339280 456339698 1.410000e-68 270.0
26 TraesCS3D01G074100 chr1D 76.579 380 55 23 2712 3083 249545224 249545577 8.790000e-41 178.0
27 TraesCS3D01G074100 chr1D 81.159 207 24 12 2881 3084 474238419 474238613 5.330000e-33 152.0
28 TraesCS3D01G074100 chr1B 80.000 245 25 17 2858 3084 265977156 265977394 3.190000e-35 159.0
29 TraesCS3D01G074100 chr1B 77.154 267 30 21 2812 3056 451558201 451558458 3.230000e-25 126.0
30 TraesCS3D01G074100 chr1B 87.324 71 7 2 2492 2561 395973353 395973284 2.550000e-11 80.5
31 TraesCS3D01G074100 chr6B 88.732 71 6 2 2492 2561 63610538 63610469 5.480000e-13 86.1
32 TraesCS3D01G074100 chr2A 88.732 71 6 2 2492 2561 761175460 761175391 5.480000e-13 86.1
33 TraesCS3D01G074100 chr2A 96.970 33 1 0 2516 2548 663632564 663632532 4.300000e-04 56.5
34 TraesCS3D01G074100 chr5D 91.667 48 2 2 2515 2561 445088628 445088582 7.140000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G074100 chr3D 34689220 34692305 3085 False 5699.0 5699 100.000000 1 3086 1 chr3D.!!$F1 3085
1 TraesCS3D01G074100 chr3B 56745671 56751334 5663 True 1311.0 3267 92.314333 1 3069 3 chr3B.!!$R3 3068
2 TraesCS3D01G074100 chr3B 631965228 631965850 622 False 645.0 645 85.783000 1 610 1 chr3B.!!$F1 609
3 TraesCS3D01G074100 chr3A 477319645 477320894 1249 True 1720.0 1720 91.435000 850 2109 1 chr3A.!!$R2 1259
4 TraesCS3D01G074100 chr2B 105806409 105807014 605 True 732.0 732 88.633000 10 610 1 chr2B.!!$R1 600
5 TraesCS3D01G074100 chr6D 337843420 337844023 603 True 673.0 673 86.851000 1 610 1 chr6D.!!$R2 609
6 TraesCS3D01G074100 chr5A 625908198 625908822 624 True 669.0 669 86.422000 1 610 1 chr5A.!!$R1 609
7 TraesCS3D01G074100 chr4D 442615928 442616540 612 False 660.0 660 86.504000 12 610 1 chr4D.!!$F1 598
8 TraesCS3D01G074100 chr7D 45657685 45658519 834 True 374.8 658 90.172000 1 610 2 chr7D.!!$R2 609
9 TraesCS3D01G074100 chr7A 579816220 579816755 535 False 560.0 560 85.847000 1 526 1 chr7A.!!$F1 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
612 878 0.041982 AGTGAAGGAGAGGAGTCCCC 59.958 60.0 5.25 0.0 37.31 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2451 2731 0.378257 GGTCCGTGCGTCGAGTATTA 59.622 55.0 0.0 0.0 42.86 0.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
208 213 2.823147 GCTTCGGCTCTGCTGCAT 60.823 61.111 1.31 0.00 38.08 3.96
227 232 4.426313 TCCTCGAGCTCCGCCTCA 62.426 66.667 6.99 0.00 38.37 3.86
282 289 4.180946 CTCGCGTGGAGGGTCTCG 62.181 72.222 5.77 0.00 39.22 4.04
288 295 0.961358 CGTGGAGGGTCTCGTTCTCT 60.961 60.000 0.00 0.00 0.00 3.10
289 296 0.528470 GTGGAGGGTCTCGTTCTCTG 59.472 60.000 0.00 0.00 0.00 3.35
323 360 1.737008 GAACGCCTCGACCTGGTTC 60.737 63.158 0.00 0.00 0.00 3.62
410 447 4.028490 CCCTGGCGTGCTTGGGTA 62.028 66.667 12.34 0.00 35.13 3.69
412 449 2.662596 CTGGCGTGCTTGGGTAGA 59.337 61.111 0.00 0.00 0.00 2.59
484 528 4.717629 CTCGCCGTGAGTTGCCGA 62.718 66.667 0.41 0.00 40.03 5.54
590 856 2.444895 GAGGCGAGGAGTGGGGAT 60.445 66.667 0.00 0.00 0.00 3.85
591 857 1.152525 GAGGCGAGGAGTGGGGATA 60.153 63.158 0.00 0.00 0.00 2.59
593 859 0.326238 AGGCGAGGAGTGGGGATAAA 60.326 55.000 0.00 0.00 0.00 1.40
594 860 0.106894 GGCGAGGAGTGGGGATAAAG 59.893 60.000 0.00 0.00 0.00 1.85
595 861 0.831307 GCGAGGAGTGGGGATAAAGT 59.169 55.000 0.00 0.00 0.00 2.66
596 862 1.473434 GCGAGGAGTGGGGATAAAGTG 60.473 57.143 0.00 0.00 0.00 3.16
597 863 2.108168 CGAGGAGTGGGGATAAAGTGA 58.892 52.381 0.00 0.00 0.00 3.41
598 864 2.500098 CGAGGAGTGGGGATAAAGTGAA 59.500 50.000 0.00 0.00 0.00 3.18
599 865 3.430929 CGAGGAGTGGGGATAAAGTGAAG 60.431 52.174 0.00 0.00 0.00 3.02
600 866 2.846827 AGGAGTGGGGATAAAGTGAAGG 59.153 50.000 0.00 0.00 0.00 3.46
601 867 2.844348 GGAGTGGGGATAAAGTGAAGGA 59.156 50.000 0.00 0.00 0.00 3.36
602 868 3.118223 GGAGTGGGGATAAAGTGAAGGAG 60.118 52.174 0.00 0.00 0.00 3.69
603 869 3.775316 GAGTGGGGATAAAGTGAAGGAGA 59.225 47.826 0.00 0.00 0.00 3.71
604 870 3.777522 AGTGGGGATAAAGTGAAGGAGAG 59.222 47.826 0.00 0.00 0.00 3.20
605 871 3.115390 TGGGGATAAAGTGAAGGAGAGG 58.885 50.000 0.00 0.00 0.00 3.69
606 872 3.246350 TGGGGATAAAGTGAAGGAGAGGA 60.246 47.826 0.00 0.00 0.00 3.71
607 873 3.389656 GGGGATAAAGTGAAGGAGAGGAG 59.610 52.174 0.00 0.00 0.00 3.69
608 874 4.034410 GGGATAAAGTGAAGGAGAGGAGT 58.966 47.826 0.00 0.00 0.00 3.85
609 875 4.100344 GGGATAAAGTGAAGGAGAGGAGTC 59.900 50.000 0.00 0.00 0.00 3.36
610 876 4.100344 GGATAAAGTGAAGGAGAGGAGTCC 59.900 50.000 0.00 0.00 36.79 3.85
611 877 1.945580 AAGTGAAGGAGAGGAGTCCC 58.054 55.000 5.25 0.00 37.31 4.46
612 878 0.041982 AGTGAAGGAGAGGAGTCCCC 59.958 60.000 5.25 0.00 37.31 4.81
613 879 0.978667 GTGAAGGAGAGGAGTCCCCC 60.979 65.000 5.25 5.11 37.31 5.40
661 927 4.238654 TGGCGTTCGGTCGGGTTT 62.239 61.111 2.90 0.00 0.00 3.27
681 947 0.680061 GTTTCACCCTCCACGAGTCT 59.320 55.000 0.00 0.00 0.00 3.24
682 948 0.679505 TTTCACCCTCCACGAGTCTG 59.320 55.000 0.00 0.00 0.00 3.51
703 969 2.617274 GGCTGACGTGGCAAGTTCC 61.617 63.158 7.66 6.16 0.00 3.62
706 972 1.845809 CTGACGTGGCAAGTTCCAGC 61.846 60.000 7.66 0.00 36.67 4.85
710 976 2.669569 TGGCAAGTTCCAGCGCTC 60.670 61.111 7.13 0.00 0.00 5.03
754 1020 2.391821 CATCGAGTGCGCGTGAAC 59.608 61.111 8.43 0.00 37.46 3.18
755 1021 2.049526 ATCGAGTGCGCGTGAACA 60.050 55.556 10.32 0.00 37.46 3.18
774 1040 5.407084 TGAACATGTTGATAAGTACCACACG 59.593 40.000 17.58 0.00 0.00 4.49
775 1041 4.890088 ACATGTTGATAAGTACCACACGT 58.110 39.130 0.00 0.00 0.00 4.49
780 1046 5.921976 TGTTGATAAGTACCACACGTGTAAG 59.078 40.000 22.90 18.01 0.00 2.34
827 1093 4.900684 TCCCAATGTATCTTTTGTGACGA 58.099 39.130 0.00 0.00 0.00 4.20
907 1173 8.064389 TGCCTCCTAATAGCATCTTCTAGATAT 58.936 37.037 0.00 0.00 32.12 1.63
985 1252 2.469826 CAGAAACACACAGTCACGCTA 58.530 47.619 0.00 0.00 0.00 4.26
2007 2274 1.600107 GGAGGTGGTGGTAATCGCA 59.400 57.895 0.00 0.00 0.00 5.10
2161 2441 3.635331 GCACATGGATGATGGAAATTCG 58.365 45.455 0.00 0.00 36.23 3.34
2198 2478 7.601856 TGTTTGAGTGTTTTCTCTTCACAAAT 58.398 30.769 0.00 0.00 35.68 2.32
2201 2481 6.563422 TGAGTGTTTTCTCTTCACAAATTGG 58.437 36.000 0.00 0.00 35.68 3.16
2204 2484 7.035612 AGTGTTTTCTCTTCACAAATTGGAAC 58.964 34.615 0.00 0.00 34.94 3.62
2214 2494 6.601741 TCACAAATTGGAACAGAAAATTGC 57.398 33.333 0.00 0.00 42.39 3.56
2244 2524 8.083462 TCTAAACATATGATAATTCGCACCAC 57.917 34.615 10.38 0.00 0.00 4.16
2267 2547 2.978156 TCATTTGGCAGGAAGGTTCT 57.022 45.000 0.00 0.00 0.00 3.01
2268 2548 3.243359 TCATTTGGCAGGAAGGTTCTT 57.757 42.857 0.00 0.00 0.00 2.52
2269 2549 2.892852 TCATTTGGCAGGAAGGTTCTTG 59.107 45.455 0.00 0.00 37.34 3.02
2270 2550 2.746279 TTTGGCAGGAAGGTTCTTGA 57.254 45.000 6.05 0.00 36.49 3.02
2271 2551 2.978156 TTGGCAGGAAGGTTCTTGAT 57.022 45.000 6.05 0.00 36.49 2.57
2272 2552 4.380843 TTTGGCAGGAAGGTTCTTGATA 57.619 40.909 6.05 0.00 36.49 2.15
2273 2553 3.634397 TGGCAGGAAGGTTCTTGATAG 57.366 47.619 6.05 0.00 36.49 2.08
2274 2554 3.181329 TGGCAGGAAGGTTCTTGATAGA 58.819 45.455 6.05 0.00 36.49 1.98
2275 2555 3.587061 TGGCAGGAAGGTTCTTGATAGAA 59.413 43.478 6.05 0.00 36.49 2.10
2276 2556 4.042809 TGGCAGGAAGGTTCTTGATAGAAA 59.957 41.667 6.05 0.00 41.86 2.52
2277 2557 5.196695 GGCAGGAAGGTTCTTGATAGAAAT 58.803 41.667 6.05 0.00 41.86 2.17
2278 2558 5.654209 GGCAGGAAGGTTCTTGATAGAAATT 59.346 40.000 6.05 0.00 41.86 1.82
2279 2559 6.183360 GGCAGGAAGGTTCTTGATAGAAATTC 60.183 42.308 6.05 0.00 41.86 2.17
2280 2560 6.183360 GCAGGAAGGTTCTTGATAGAAATTCC 60.183 42.308 17.28 17.28 46.61 3.01
2282 2562 7.946381 GGAAGGTTCTTGATAGAAATTCCTT 57.054 36.000 17.51 13.07 44.98 3.36
2284 2564 9.114952 GGAAGGTTCTTGATAGAAATTCCTTAG 57.885 37.037 17.51 0.00 44.98 2.18
2285 2565 9.674068 GAAGGTTCTTGATAGAAATTCCTTAGT 57.326 33.333 7.75 0.00 41.15 2.24
2286 2566 9.674068 AAGGTTCTTGATAGAAATTCCTTAGTC 57.326 33.333 6.53 0.00 40.16 2.59
2287 2567 8.268605 AGGTTCTTGATAGAAATTCCTTAGTCC 58.731 37.037 0.00 0.00 41.86 3.85
2288 2568 8.268605 GGTTCTTGATAGAAATTCCTTAGTCCT 58.731 37.037 0.00 0.00 41.86 3.85
2289 2569 9.103861 GTTCTTGATAGAAATTCCTTAGTCCTG 57.896 37.037 0.00 0.00 41.86 3.86
2290 2570 7.275920 TCTTGATAGAAATTCCTTAGTCCTGC 58.724 38.462 0.00 0.00 0.00 4.85
2291 2571 6.814954 TGATAGAAATTCCTTAGTCCTGCT 57.185 37.500 0.00 0.00 0.00 4.24
2292 2572 6.821388 TGATAGAAATTCCTTAGTCCTGCTC 58.179 40.000 0.00 0.00 0.00 4.26
2293 2573 6.613271 TGATAGAAATTCCTTAGTCCTGCTCT 59.387 38.462 0.00 0.00 0.00 4.09
2294 2574 5.770685 AGAAATTCCTTAGTCCTGCTCTT 57.229 39.130 0.00 0.00 0.00 2.85
2295 2575 5.739959 AGAAATTCCTTAGTCCTGCTCTTC 58.260 41.667 0.00 0.00 0.00 2.87
2296 2576 5.249393 AGAAATTCCTTAGTCCTGCTCTTCA 59.751 40.000 0.00 0.00 0.00 3.02
2297 2577 5.505181 AATTCCTTAGTCCTGCTCTTCAA 57.495 39.130 0.00 0.00 0.00 2.69
2298 2578 5.707066 ATTCCTTAGTCCTGCTCTTCAAT 57.293 39.130 0.00 0.00 0.00 2.57
2299 2579 4.478206 TCCTTAGTCCTGCTCTTCAATG 57.522 45.455 0.00 0.00 0.00 2.82
2300 2580 3.198635 TCCTTAGTCCTGCTCTTCAATGG 59.801 47.826 0.00 0.00 0.00 3.16
2301 2581 2.698855 TAGTCCTGCTCTTCAATGGC 57.301 50.000 0.00 0.00 0.00 4.40
2302 2582 0.990374 AGTCCTGCTCTTCAATGGCT 59.010 50.000 0.00 0.00 0.00 4.75
2303 2583 2.191400 AGTCCTGCTCTTCAATGGCTA 58.809 47.619 0.00 0.00 0.00 3.93
2304 2584 2.093235 AGTCCTGCTCTTCAATGGCTAC 60.093 50.000 0.00 0.00 0.00 3.58
2305 2585 2.093235 GTCCTGCTCTTCAATGGCTACT 60.093 50.000 0.00 0.00 0.00 2.57
2306 2586 3.133003 GTCCTGCTCTTCAATGGCTACTA 59.867 47.826 0.00 0.00 0.00 1.82
2307 2587 3.774766 TCCTGCTCTTCAATGGCTACTAA 59.225 43.478 0.00 0.00 0.00 2.24
2308 2588 4.410228 TCCTGCTCTTCAATGGCTACTAAT 59.590 41.667 0.00 0.00 0.00 1.73
2309 2589 4.514441 CCTGCTCTTCAATGGCTACTAATG 59.486 45.833 0.00 0.00 0.00 1.90
2310 2590 3.879295 TGCTCTTCAATGGCTACTAATGC 59.121 43.478 0.00 0.00 0.00 3.56
2311 2591 3.879295 GCTCTTCAATGGCTACTAATGCA 59.121 43.478 0.00 0.00 0.00 3.96
2312 2592 4.024218 GCTCTTCAATGGCTACTAATGCAG 60.024 45.833 0.00 0.00 0.00 4.41
2313 2593 3.879295 TCTTCAATGGCTACTAATGCAGC 59.121 43.478 0.00 0.00 37.05 5.25
2314 2594 3.280197 TCAATGGCTACTAATGCAGCA 57.720 42.857 0.00 0.00 39.63 4.41
2315 2595 3.619419 TCAATGGCTACTAATGCAGCAA 58.381 40.909 0.00 0.00 39.63 3.91
2316 2596 3.378112 TCAATGGCTACTAATGCAGCAAC 59.622 43.478 0.00 0.00 39.63 4.17
2317 2597 2.787473 TGGCTACTAATGCAGCAACT 57.213 45.000 0.00 0.00 39.63 3.16
2318 2598 3.071874 TGGCTACTAATGCAGCAACTT 57.928 42.857 0.00 0.00 39.63 2.66
2319 2599 3.420893 TGGCTACTAATGCAGCAACTTT 58.579 40.909 0.00 0.00 39.63 2.66
2320 2600 3.826157 TGGCTACTAATGCAGCAACTTTT 59.174 39.130 0.00 0.00 39.63 2.27
2321 2601 4.280677 TGGCTACTAATGCAGCAACTTTTT 59.719 37.500 0.00 0.00 39.63 1.94
2349 2629 7.681939 AAGTTTGATATTTGGCGACTTTAGA 57.318 32.000 0.00 0.00 0.00 2.10
2350 2630 7.865706 AGTTTGATATTTGGCGACTTTAGAT 57.134 32.000 0.00 0.00 0.00 1.98
2351 2631 8.281212 AGTTTGATATTTGGCGACTTTAGATT 57.719 30.769 0.00 0.00 0.00 2.40
2352 2632 8.739972 AGTTTGATATTTGGCGACTTTAGATTT 58.260 29.630 0.00 0.00 0.00 2.17
2353 2633 8.798153 GTTTGATATTTGGCGACTTTAGATTTG 58.202 33.333 0.00 0.00 0.00 2.32
2354 2634 7.624360 TGATATTTGGCGACTTTAGATTTGT 57.376 32.000 0.00 0.00 0.00 2.83
2355 2635 7.471721 TGATATTTGGCGACTTTAGATTTGTG 58.528 34.615 0.00 0.00 0.00 3.33
2356 2636 5.957842 ATTTGGCGACTTTAGATTTGTGA 57.042 34.783 0.00 0.00 0.00 3.58
2357 2637 5.356882 TTTGGCGACTTTAGATTTGTGAG 57.643 39.130 0.00 0.00 0.00 3.51
2358 2638 3.334691 TGGCGACTTTAGATTTGTGAGG 58.665 45.455 0.00 0.00 0.00 3.86
2359 2639 3.007506 TGGCGACTTTAGATTTGTGAGGA 59.992 43.478 0.00 0.00 0.00 3.71
2360 2640 3.371285 GGCGACTTTAGATTTGTGAGGAC 59.629 47.826 0.00 0.00 0.00 3.85
2361 2641 3.371285 GCGACTTTAGATTTGTGAGGACC 59.629 47.826 0.00 0.00 0.00 4.46
2362 2642 4.566004 CGACTTTAGATTTGTGAGGACCA 58.434 43.478 0.00 0.00 0.00 4.02
2363 2643 5.178797 CGACTTTAGATTTGTGAGGACCAT 58.821 41.667 0.00 0.00 0.00 3.55
2364 2644 5.643777 CGACTTTAGATTTGTGAGGACCATT 59.356 40.000 0.00 0.00 0.00 3.16
2365 2645 6.816640 CGACTTTAGATTTGTGAGGACCATTA 59.183 38.462 0.00 0.00 0.00 1.90
2366 2646 7.333423 CGACTTTAGATTTGTGAGGACCATTAA 59.667 37.037 0.00 0.00 0.00 1.40
2367 2647 8.934023 ACTTTAGATTTGTGAGGACCATTAAA 57.066 30.769 0.00 0.00 0.00 1.52
2368 2648 9.362151 ACTTTAGATTTGTGAGGACCATTAAAA 57.638 29.630 0.00 0.00 0.00 1.52
2375 2655 8.804688 TTTGTGAGGACCATTAAAATTTTACG 57.195 30.769 10.18 5.08 0.00 3.18
2376 2656 7.513371 TGTGAGGACCATTAAAATTTTACGT 57.487 32.000 10.18 7.09 0.00 3.57
2377 2657 7.586747 TGTGAGGACCATTAAAATTTTACGTC 58.413 34.615 10.18 14.20 0.00 4.34
2378 2658 7.446013 TGTGAGGACCATTAAAATTTTACGTCT 59.554 33.333 20.53 12.71 0.00 4.18
2379 2659 8.938906 GTGAGGACCATTAAAATTTTACGTCTA 58.061 33.333 20.53 6.77 0.00 2.59
2380 2660 9.675464 TGAGGACCATTAAAATTTTACGTCTAT 57.325 29.630 20.53 14.40 0.00 1.98
2417 2697 9.628500 ATCTACTTAAAGACAAACTTTCCTTGT 57.372 29.630 0.00 0.00 44.36 3.16
2426 2706 7.787725 GACAAACTTTCCTTGTCTCTAGAAA 57.212 36.000 8.15 0.00 46.01 2.52
2427 2707 7.555306 ACAAACTTTCCTTGTCTCTAGAAAC 57.445 36.000 0.00 0.00 31.29 2.78
2428 2708 6.542735 ACAAACTTTCCTTGTCTCTAGAAACC 59.457 38.462 0.00 0.00 31.29 3.27
2429 2709 4.884247 ACTTTCCTTGTCTCTAGAAACCG 58.116 43.478 0.00 0.00 0.00 4.44
2430 2710 4.587684 ACTTTCCTTGTCTCTAGAAACCGA 59.412 41.667 0.00 0.00 0.00 4.69
2431 2711 4.516365 TTCCTTGTCTCTAGAAACCGAC 57.484 45.455 0.00 0.00 0.00 4.79
2432 2712 3.493334 TCCTTGTCTCTAGAAACCGACA 58.507 45.455 8.13 8.13 34.85 4.35
2433 2713 3.255149 TCCTTGTCTCTAGAAACCGACAC 59.745 47.826 11.05 0.00 36.25 3.67
2434 2714 3.005472 CCTTGTCTCTAGAAACCGACACA 59.995 47.826 11.05 4.29 36.25 3.72
2435 2715 4.322049 CCTTGTCTCTAGAAACCGACACAT 60.322 45.833 11.05 0.00 36.25 3.21
2436 2716 4.436242 TGTCTCTAGAAACCGACACATC 57.564 45.455 8.13 0.00 32.00 3.06
2437 2717 4.079970 TGTCTCTAGAAACCGACACATCT 58.920 43.478 8.13 0.00 32.00 2.90
2438 2718 5.250982 TGTCTCTAGAAACCGACACATCTA 58.749 41.667 8.13 0.00 32.00 1.98
2439 2719 5.123502 TGTCTCTAGAAACCGACACATCTAC 59.876 44.000 8.13 0.00 32.00 2.59
2440 2720 4.639310 TCTCTAGAAACCGACACATCTACC 59.361 45.833 0.00 0.00 0.00 3.18
2441 2721 4.597004 TCTAGAAACCGACACATCTACCT 58.403 43.478 0.00 0.00 0.00 3.08
2442 2722 3.594603 AGAAACCGACACATCTACCTG 57.405 47.619 0.00 0.00 0.00 4.00
2443 2723 3.162666 AGAAACCGACACATCTACCTGA 58.837 45.455 0.00 0.00 0.00 3.86
2444 2724 3.576982 AGAAACCGACACATCTACCTGAA 59.423 43.478 0.00 0.00 0.00 3.02
2445 2725 3.594603 AACCGACACATCTACCTGAAG 57.405 47.619 0.00 0.00 0.00 3.02
2446 2726 2.803956 ACCGACACATCTACCTGAAGA 58.196 47.619 0.00 0.00 0.00 2.87
2447 2727 2.492484 ACCGACACATCTACCTGAAGAC 59.508 50.000 0.00 0.00 0.00 3.01
2448 2728 2.159226 CCGACACATCTACCTGAAGACC 60.159 54.545 0.00 0.00 0.00 3.85
2449 2729 2.478031 CGACACATCTACCTGAAGACCG 60.478 54.545 0.00 0.00 0.00 4.79
2450 2730 2.753452 GACACATCTACCTGAAGACCGA 59.247 50.000 0.00 0.00 0.00 4.69
2451 2731 3.366396 ACACATCTACCTGAAGACCGAT 58.634 45.455 0.00 0.00 0.00 4.18
2452 2732 4.533815 ACACATCTACCTGAAGACCGATA 58.466 43.478 0.00 0.00 0.00 2.92
2453 2733 4.954202 ACACATCTACCTGAAGACCGATAA 59.046 41.667 0.00 0.00 0.00 1.75
2454 2734 5.598830 ACACATCTACCTGAAGACCGATAAT 59.401 40.000 0.00 0.00 0.00 1.28
2455 2735 6.776116 ACACATCTACCTGAAGACCGATAATA 59.224 38.462 0.00 0.00 0.00 0.98
2456 2736 7.085116 CACATCTACCTGAAGACCGATAATAC 58.915 42.308 0.00 0.00 0.00 1.89
2457 2737 7.005296 ACATCTACCTGAAGACCGATAATACT 58.995 38.462 0.00 0.00 0.00 2.12
2458 2738 7.175293 ACATCTACCTGAAGACCGATAATACTC 59.825 40.741 0.00 0.00 0.00 2.59
2459 2739 4.832590 ACCTGAAGACCGATAATACTCG 57.167 45.455 0.00 0.00 38.37 4.18
2460 2740 4.458397 ACCTGAAGACCGATAATACTCGA 58.542 43.478 0.00 0.00 41.12 4.04
2461 2741 4.275443 ACCTGAAGACCGATAATACTCGAC 59.725 45.833 0.00 0.00 41.12 4.20
2462 2742 4.456019 CTGAAGACCGATAATACTCGACG 58.544 47.826 0.00 0.00 41.12 5.12
2463 2743 2.965477 AGACCGATAATACTCGACGC 57.035 50.000 0.00 0.00 41.12 5.19
2464 2744 2.216046 AGACCGATAATACTCGACGCA 58.784 47.619 0.00 0.00 41.12 5.24
2465 2745 2.032204 AGACCGATAATACTCGACGCAC 60.032 50.000 0.00 0.00 41.12 5.34
2466 2746 1.315497 CCGATAATACTCGACGCACG 58.685 55.000 0.00 0.00 41.12 5.34
2467 2747 1.315497 CGATAATACTCGACGCACGG 58.685 55.000 3.02 0.00 41.12 4.94
2468 2748 1.070376 CGATAATACTCGACGCACGGA 60.070 52.381 3.02 0.00 41.12 4.69
2469 2749 2.305291 GATAATACTCGACGCACGGAC 58.695 52.381 3.02 0.00 42.82 4.79
2470 2750 0.378257 TAATACTCGACGCACGGACC 59.622 55.000 3.02 0.00 42.82 4.46
2471 2751 2.275547 AATACTCGACGCACGGACCC 62.276 60.000 3.02 0.00 42.82 4.46
2472 2752 3.907260 TACTCGACGCACGGACCCT 62.907 63.158 3.02 0.00 42.82 4.34
2473 2753 4.778415 CTCGACGCACGGACCCTG 62.778 72.222 3.02 0.00 42.82 4.45
2475 2755 4.129737 CGACGCACGGACCCTGAT 62.130 66.667 0.00 0.00 38.46 2.90
2476 2756 2.509336 GACGCACGGACCCTGATG 60.509 66.667 0.00 0.00 0.00 3.07
2477 2757 4.082523 ACGCACGGACCCTGATGG 62.083 66.667 0.00 0.00 41.37 3.51
2491 2771 4.519540 CCTGATGGGGTTTTACAAACAG 57.480 45.455 2.00 0.00 0.00 3.16
2492 2772 3.258123 CCTGATGGGGTTTTACAAACAGG 59.742 47.826 0.00 0.00 38.15 4.00
2493 2773 3.895041 CTGATGGGGTTTTACAAACAGGT 59.105 43.478 2.00 0.00 0.00 4.00
2494 2774 3.639094 TGATGGGGTTTTACAAACAGGTG 59.361 43.478 2.00 0.00 0.00 4.00
2495 2775 3.103080 TGGGGTTTTACAAACAGGTGT 57.897 42.857 2.00 0.00 35.43 4.16
2496 2776 2.761208 TGGGGTTTTACAAACAGGTGTG 59.239 45.455 2.00 0.00 32.75 3.82
2497 2777 3.025262 GGGGTTTTACAAACAGGTGTGA 58.975 45.455 0.00 0.00 32.75 3.58
2498 2778 3.181484 GGGGTTTTACAAACAGGTGTGAC 60.181 47.826 0.00 0.00 32.75 3.67
2499 2779 3.697542 GGGTTTTACAAACAGGTGTGACT 59.302 43.478 0.00 0.00 32.75 3.41
2500 2780 4.883006 GGGTTTTACAAACAGGTGTGACTA 59.117 41.667 0.00 0.00 32.75 2.59
2501 2781 5.533528 GGGTTTTACAAACAGGTGTGACTAT 59.466 40.000 0.00 0.00 32.75 2.12
2502 2782 6.711645 GGGTTTTACAAACAGGTGTGACTATA 59.288 38.462 0.00 0.00 32.75 1.31
2503 2783 7.392393 GGGTTTTACAAACAGGTGTGACTATAT 59.608 37.037 0.00 0.00 32.75 0.86
2504 2784 8.448615 GGTTTTACAAACAGGTGTGACTATATC 58.551 37.037 0.00 0.00 32.75 1.63
2505 2785 9.216117 GTTTTACAAACAGGTGTGACTATATCT 57.784 33.333 0.00 0.00 32.75 1.98
2506 2786 8.997621 TTTACAAACAGGTGTGACTATATCTC 57.002 34.615 0.00 0.00 32.75 2.75
2507 2787 6.605471 ACAAACAGGTGTGACTATATCTCA 57.395 37.500 0.00 0.00 0.00 3.27
2508 2788 7.187824 ACAAACAGGTGTGACTATATCTCAT 57.812 36.000 0.00 0.00 33.54 2.90
2509 2789 7.268586 ACAAACAGGTGTGACTATATCTCATC 58.731 38.462 0.00 0.00 33.54 2.92
2510 2790 7.124901 ACAAACAGGTGTGACTATATCTCATCT 59.875 37.037 0.00 0.00 41.91 2.90
2511 2791 8.633561 CAAACAGGTGTGACTATATCTCATCTA 58.366 37.037 0.00 0.00 39.72 1.98
2512 2792 7.753309 ACAGGTGTGACTATATCTCATCTAC 57.247 40.000 0.00 0.00 39.72 2.59
2513 2793 7.290813 ACAGGTGTGACTATATCTCATCTACA 58.709 38.462 0.00 0.00 39.72 2.74
2514 2794 7.947332 ACAGGTGTGACTATATCTCATCTACAT 59.053 37.037 0.00 0.00 39.72 2.29
2515 2795 8.242739 CAGGTGTGACTATATCTCATCTACATG 58.757 40.741 0.00 0.00 39.72 3.21
2516 2796 7.947332 AGGTGTGACTATATCTCATCTACATGT 59.053 37.037 2.69 2.69 39.89 3.21
2517 2797 8.026026 GGTGTGACTATATCTCATCTACATGTG 58.974 40.741 9.11 0.00 33.54 3.21
2518 2798 8.787852 GTGTGACTATATCTCATCTACATGTGA 58.212 37.037 9.11 4.49 37.03 3.58
2519 2799 9.007901 TGTGACTATATCTCATCTACATGTGAG 57.992 37.037 9.11 6.66 42.46 3.51
2529 2809 9.237187 TCTCATCTACATGTGAGATAATACCTC 57.763 37.037 9.11 0.00 44.24 3.85
2530 2810 8.940397 TCATCTACATGTGAGATAATACCTCA 57.060 34.615 9.11 0.00 38.24 3.86
2542 2822 9.367160 TGAGATAATACCTCACATCTAACATGA 57.633 33.333 0.00 0.00 35.89 3.07
2543 2823 9.632807 GAGATAATACCTCACATCTAACATGAC 57.367 37.037 0.00 0.00 0.00 3.06
2544 2824 9.147732 AGATAATACCTCACATCTAACATGACA 57.852 33.333 0.00 0.00 0.00 3.58
2545 2825 9.935241 GATAATACCTCACATCTAACATGACAT 57.065 33.333 0.00 0.00 0.00 3.06
2546 2826 9.935241 ATAATACCTCACATCTAACATGACATC 57.065 33.333 0.00 0.00 0.00 3.06
2547 2827 5.682234 ACCTCACATCTAACATGACATCA 57.318 39.130 0.00 0.00 0.00 3.07
2548 2828 6.244552 ACCTCACATCTAACATGACATCAT 57.755 37.500 0.00 0.00 36.96 2.45
2549 2829 6.286758 ACCTCACATCTAACATGACATCATC 58.713 40.000 0.00 0.00 33.61 2.92
2550 2830 5.699915 CCTCACATCTAACATGACATCATCC 59.300 44.000 0.00 0.00 33.61 3.51
2551 2831 6.464039 CCTCACATCTAACATGACATCATCCT 60.464 42.308 0.00 0.00 33.61 3.24
2552 2832 7.256083 CCTCACATCTAACATGACATCATCCTA 60.256 40.741 0.00 0.00 33.61 2.94
2553 2833 7.436933 TCACATCTAACATGACATCATCCTAC 58.563 38.462 0.00 0.00 33.61 3.18
2554 2834 6.364435 CACATCTAACATGACATCATCCTACG 59.636 42.308 0.00 0.00 33.61 3.51
2555 2835 6.040955 ACATCTAACATGACATCATCCTACGT 59.959 38.462 0.00 0.00 33.61 3.57
2556 2836 6.465439 TCTAACATGACATCATCCTACGTT 57.535 37.500 0.00 0.00 33.61 3.99
2557 2837 6.273071 TCTAACATGACATCATCCTACGTTG 58.727 40.000 0.00 0.00 33.61 4.10
2558 2838 4.471904 ACATGACATCATCCTACGTTGT 57.528 40.909 0.00 0.00 33.61 3.32
2559 2839 4.832248 ACATGACATCATCCTACGTTGTT 58.168 39.130 0.00 0.00 33.61 2.83
2560 2840 5.245531 ACATGACATCATCCTACGTTGTTT 58.754 37.500 0.00 0.00 33.61 2.83
2561 2841 5.351465 ACATGACATCATCCTACGTTGTTTC 59.649 40.000 0.00 0.00 33.61 2.78
2562 2842 4.250464 TGACATCATCCTACGTTGTTTCC 58.750 43.478 0.00 0.00 0.00 3.13
2563 2843 4.020573 TGACATCATCCTACGTTGTTTCCT 60.021 41.667 0.00 0.00 0.00 3.36
2564 2844 4.504858 ACATCATCCTACGTTGTTTCCTC 58.495 43.478 0.00 0.00 0.00 3.71
2565 2845 4.223032 ACATCATCCTACGTTGTTTCCTCT 59.777 41.667 0.00 0.00 0.00 3.69
2566 2846 5.421056 ACATCATCCTACGTTGTTTCCTCTA 59.579 40.000 0.00 0.00 0.00 2.43
2567 2847 6.098409 ACATCATCCTACGTTGTTTCCTCTAT 59.902 38.462 0.00 0.00 0.00 1.98
2568 2848 6.540438 TCATCCTACGTTGTTTCCTCTATT 57.460 37.500 0.00 0.00 0.00 1.73
2569 2849 6.338146 TCATCCTACGTTGTTTCCTCTATTG 58.662 40.000 0.00 0.00 0.00 1.90
2570 2850 5.733620 TCCTACGTTGTTTCCTCTATTGT 57.266 39.130 0.00 0.00 0.00 2.71
2571 2851 6.105397 TCCTACGTTGTTTCCTCTATTGTT 57.895 37.500 0.00 0.00 0.00 2.83
2572 2852 5.929992 TCCTACGTTGTTTCCTCTATTGTTG 59.070 40.000 0.00 0.00 0.00 3.33
2573 2853 5.929992 CCTACGTTGTTTCCTCTATTGTTGA 59.070 40.000 0.00 0.00 0.00 3.18
2574 2854 5.668558 ACGTTGTTTCCTCTATTGTTGAC 57.331 39.130 0.00 0.00 0.00 3.18
2575 2855 5.120399 ACGTTGTTTCCTCTATTGTTGACA 58.880 37.500 0.00 0.00 0.00 3.58
2576 2856 5.587043 ACGTTGTTTCCTCTATTGTTGACAA 59.413 36.000 0.00 0.00 40.51 3.18
2577 2857 5.907391 CGTTGTTTCCTCTATTGTTGACAAC 59.093 40.000 11.54 11.54 41.09 3.32
2578 2858 6.238374 CGTTGTTTCCTCTATTGTTGACAACT 60.238 38.462 18.73 2.75 41.86 3.16
2579 2859 7.042321 CGTTGTTTCCTCTATTGTTGACAACTA 60.042 37.037 18.73 12.12 41.86 2.24
2580 2860 7.724305 TGTTTCCTCTATTGTTGACAACTAC 57.276 36.000 18.73 0.00 38.86 2.73
2581 2861 6.422701 TGTTTCCTCTATTGTTGACAACTACG 59.577 38.462 18.73 7.12 38.86 3.51
2582 2862 5.717078 TCCTCTATTGTTGACAACTACGT 57.283 39.130 18.73 0.00 38.86 3.57
2651 2931 2.550606 TGTCACGGGCTTGTTTGTTATC 59.449 45.455 0.00 0.00 0.00 1.75
2681 2961 2.109181 GGGAGCTCATGTACGGCC 59.891 66.667 17.19 0.34 0.00 6.13
2695 2975 4.097863 GGCCAACAACGCGCTACC 62.098 66.667 5.73 0.00 0.00 3.18
2769 5991 1.916697 GCTGGGACGCTGCTTTCTTC 61.917 60.000 13.18 0.00 0.00 2.87
3053 6295 8.816640 AAAATGTTCGCTAATTCTGAAAATGT 57.183 26.923 0.00 0.00 0.00 2.71
3054 6296 8.816640 AAATGTTCGCTAATTCTGAAAATGTT 57.183 26.923 0.00 0.00 0.00 2.71
3055 6297 8.452989 AATGTTCGCTAATTCTGAAAATGTTC 57.547 30.769 0.00 0.00 0.00 3.18
3056 6298 6.964908 TGTTCGCTAATTCTGAAAATGTTCA 58.035 32.000 0.00 0.00 41.57 3.18
3057 6299 6.855914 TGTTCGCTAATTCTGAAAATGTTCAC 59.144 34.615 0.00 0.00 38.88 3.18
3058 6300 5.617609 TCGCTAATTCTGAAAATGTTCACG 58.382 37.500 0.00 0.00 38.88 4.35
3059 6301 5.407084 TCGCTAATTCTGAAAATGTTCACGA 59.593 36.000 0.00 0.00 38.88 4.35
3060 6302 6.073494 TCGCTAATTCTGAAAATGTTCACGAA 60.073 34.615 10.85 10.85 38.88 3.85
3061 6303 6.742718 CGCTAATTCTGAAAATGTTCACGAAT 59.257 34.615 13.35 13.35 40.02 3.34
3062 6304 7.271223 CGCTAATTCTGAAAATGTTCACGAATT 59.729 33.333 24.14 24.14 43.88 2.17
3063 6305 8.915654 GCTAATTCTGAAAATGTTCACGAATTT 58.084 29.630 25.00 16.38 41.93 1.82
3065 6307 8.870160 AATTCTGAAAATGTTCACGAATTTGA 57.130 26.923 19.67 4.61 41.93 2.69
3066 6308 8.870160 ATTCTGAAAATGTTCACGAATTTGAA 57.130 26.923 13.35 6.94 38.88 2.69
3067 6309 8.694975 TTCTGAAAATGTTCACGAATTTGAAA 57.305 26.923 0.00 0.00 38.88 2.69
3068 6310 8.694975 TCTGAAAATGTTCACGAATTTGAAAA 57.305 26.923 0.00 0.00 38.88 2.29
3069 6311 9.144747 TCTGAAAATGTTCACGAATTTGAAAAA 57.855 25.926 0.00 0.00 38.88 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.677217 GGAGAGCAAGGCGATGAAAGT 60.677 52.381 0.00 0.00 0.00 2.66
227 232 3.606662 CGGGGCGACGGAGATCAT 61.607 66.667 0.00 0.00 0.00 2.45
278 285 0.891373 CCTGGAAGCAGAGAACGAGA 59.109 55.000 0.00 0.00 0.00 4.04
282 289 1.377856 GGCCCTGGAAGCAGAGAAC 60.378 63.158 0.00 0.00 0.00 3.01
362 399 4.246206 CGCGCGTCCGTCTCCATA 62.246 66.667 24.19 0.00 36.67 2.74
410 447 1.689273 GCGGTAGATGGTTGGATCTCT 59.311 52.381 0.00 0.00 34.42 3.10
412 449 0.759346 GGCGGTAGATGGTTGGATCT 59.241 55.000 0.00 0.00 36.61 2.75
442 479 1.813753 GCTAGATGCGCGGTTGGAA 60.814 57.895 8.83 0.00 0.00 3.53
484 528 2.893398 GGCGAAGACCGTGGATCT 59.107 61.111 0.00 0.00 41.15 2.75
494 538 1.740285 GCCTCTAATCCGGCGAAGA 59.260 57.895 9.30 4.74 36.45 2.87
590 856 3.442076 GGGACTCCTCTCCTTCACTTTA 58.558 50.000 0.00 0.00 0.00 1.85
591 857 2.261729 GGGACTCCTCTCCTTCACTTT 58.738 52.381 0.00 0.00 0.00 2.66
593 859 0.041982 GGGGACTCCTCTCCTTCACT 59.958 60.000 0.00 0.00 33.52 3.41
594 860 0.978667 GGGGGACTCCTCTCCTTCAC 60.979 65.000 0.00 0.00 37.20 3.18
595 861 1.392534 GGGGGACTCCTCTCCTTCA 59.607 63.158 0.00 0.00 37.20 3.02
596 862 4.384720 GGGGGACTCCTCTCCTTC 57.615 66.667 0.00 0.00 37.20 3.46
621 887 4.410555 ACAGACTCCTCTTCCTCACTTTTT 59.589 41.667 0.00 0.00 0.00 1.94
622 888 3.970640 ACAGACTCCTCTTCCTCACTTTT 59.029 43.478 0.00 0.00 0.00 2.27
632 898 0.318762 GAACGCCACAGACTCCTCTT 59.681 55.000 0.00 0.00 0.00 2.85
661 927 0.391597 GACTCGTGGAGGGTGAAACA 59.608 55.000 0.00 0.00 33.30 2.83
681 947 4.182433 TTGCCACGTCAGCCCACA 62.182 61.111 4.72 0.00 0.00 4.17
682 948 3.357079 CTTGCCACGTCAGCCCAC 61.357 66.667 4.72 0.00 0.00 4.61
703 969 2.064387 CGCAAATTTTGGAGCGCTG 58.936 52.632 18.48 0.00 43.80 5.18
710 976 0.938637 TCACGCTGCGCAAATTTTGG 60.939 50.000 23.51 0.00 0.00 3.28
741 1007 0.722469 CAACATGTTCACGCGCACTC 60.722 55.000 8.48 0.00 0.00 3.51
752 1018 5.178623 CACGTGTGGTACTTATCAACATGTT 59.821 40.000 7.58 4.92 0.00 2.71
754 1020 4.688879 ACACGTGTGGTACTTATCAACATG 59.311 41.667 22.71 0.00 34.19 3.21
755 1021 4.890088 ACACGTGTGGTACTTATCAACAT 58.110 39.130 22.71 0.00 34.19 2.71
804 1070 5.496556 TCGTCACAAAAGATACATTGGGAT 58.503 37.500 0.00 0.00 40.75 3.85
805 1071 4.900684 TCGTCACAAAAGATACATTGGGA 58.099 39.130 0.00 0.00 36.65 4.37
807 1073 6.434596 TGTTTCGTCACAAAAGATACATTGG 58.565 36.000 0.00 0.00 0.00 3.16
809 1075 7.855904 GTCTTGTTTCGTCACAAAAGATACATT 59.144 33.333 4.20 0.00 36.22 2.71
810 1076 7.352739 GTCTTGTTTCGTCACAAAAGATACAT 58.647 34.615 4.20 0.00 36.22 2.29
845 1111 2.757868 TGTTGTTCCTGTTTTGTCCCTG 59.242 45.455 0.00 0.00 0.00 4.45
907 1173 1.542472 TCGCTGATGGTCTTGTCGTTA 59.458 47.619 0.00 0.00 0.00 3.18
965 1231 1.290203 AGCGTGACTGTGTGTTTCTG 58.710 50.000 0.00 0.00 0.00 3.02
985 1252 1.002430 TGCCATCTCGCTCTCTTTGTT 59.998 47.619 0.00 0.00 0.00 2.83
1988 2255 1.520787 GCGATTACCACCACCTCCG 60.521 63.158 0.00 0.00 0.00 4.63
2187 2467 8.545420 CAATTTTCTGTTCCAATTTGTGAAGAG 58.455 33.333 13.71 13.71 34.23 2.85
2214 2494 9.644993 TGCGAATTATCATATGTTTAGAAAACG 57.355 29.630 1.90 0.00 0.00 3.60
2244 2524 3.967332 ACCTTCCTGCCAAATGAATTG 57.033 42.857 0.00 0.00 38.84 2.32
2267 2547 7.126421 AGAGCAGGACTAAGGAATTTCTATCAA 59.874 37.037 0.00 0.00 0.00 2.57
2268 2548 6.613271 AGAGCAGGACTAAGGAATTTCTATCA 59.387 38.462 0.00 0.00 0.00 2.15
2269 2549 7.061566 AGAGCAGGACTAAGGAATTTCTATC 57.938 40.000 0.00 0.00 0.00 2.08
2270 2550 7.126421 TGAAGAGCAGGACTAAGGAATTTCTAT 59.874 37.037 0.00 0.00 0.00 1.98
2271 2551 6.440647 TGAAGAGCAGGACTAAGGAATTTCTA 59.559 38.462 0.00 0.00 0.00 2.10
2272 2552 5.249393 TGAAGAGCAGGACTAAGGAATTTCT 59.751 40.000 0.00 0.00 0.00 2.52
2273 2553 5.491982 TGAAGAGCAGGACTAAGGAATTTC 58.508 41.667 0.00 0.00 0.00 2.17
2274 2554 5.505181 TGAAGAGCAGGACTAAGGAATTT 57.495 39.130 0.00 0.00 0.00 1.82
2275 2555 5.505181 TTGAAGAGCAGGACTAAGGAATT 57.495 39.130 0.00 0.00 0.00 2.17
2276 2556 5.435291 CATTGAAGAGCAGGACTAAGGAAT 58.565 41.667 0.00 0.00 0.00 3.01
2277 2557 4.323792 CCATTGAAGAGCAGGACTAAGGAA 60.324 45.833 0.00 0.00 0.00 3.36
2278 2558 3.198635 CCATTGAAGAGCAGGACTAAGGA 59.801 47.826 0.00 0.00 0.00 3.36
2279 2559 3.539604 CCATTGAAGAGCAGGACTAAGG 58.460 50.000 0.00 0.00 0.00 2.69
2280 2560 2.941720 GCCATTGAAGAGCAGGACTAAG 59.058 50.000 0.00 0.00 0.00 2.18
2281 2561 2.573462 AGCCATTGAAGAGCAGGACTAA 59.427 45.455 0.00 0.00 0.00 2.24
2282 2562 2.191400 AGCCATTGAAGAGCAGGACTA 58.809 47.619 0.00 0.00 0.00 2.59
2283 2563 0.990374 AGCCATTGAAGAGCAGGACT 59.010 50.000 0.00 0.00 0.00 3.85
2284 2564 2.093235 AGTAGCCATTGAAGAGCAGGAC 60.093 50.000 0.00 0.00 0.00 3.85
2285 2565 2.191400 AGTAGCCATTGAAGAGCAGGA 58.809 47.619 0.00 0.00 0.00 3.86
2286 2566 2.706339 AGTAGCCATTGAAGAGCAGG 57.294 50.000 0.00 0.00 0.00 4.85
2287 2567 4.024218 GCATTAGTAGCCATTGAAGAGCAG 60.024 45.833 0.00 0.00 0.00 4.24
2288 2568 3.879295 GCATTAGTAGCCATTGAAGAGCA 59.121 43.478 0.00 0.00 0.00 4.26
2289 2569 3.879295 TGCATTAGTAGCCATTGAAGAGC 59.121 43.478 0.00 0.00 0.00 4.09
2290 2570 4.024218 GCTGCATTAGTAGCCATTGAAGAG 60.024 45.833 0.00 0.00 46.31 2.85
2291 2571 3.879295 GCTGCATTAGTAGCCATTGAAGA 59.121 43.478 0.00 0.00 46.31 2.87
2292 2572 4.220533 GCTGCATTAGTAGCCATTGAAG 57.779 45.455 0.00 0.00 46.31 3.02
2323 2603 9.391006 TCTAAAGTCGCCAAATATCAAACTTAT 57.609 29.630 0.00 0.00 0.00 1.73
2324 2604 8.780846 TCTAAAGTCGCCAAATATCAAACTTA 57.219 30.769 0.00 0.00 0.00 2.24
2325 2605 7.681939 TCTAAAGTCGCCAAATATCAAACTT 57.318 32.000 0.00 0.00 0.00 2.66
2326 2606 7.865706 ATCTAAAGTCGCCAAATATCAAACT 57.134 32.000 0.00 0.00 0.00 2.66
2327 2607 8.798153 CAAATCTAAAGTCGCCAAATATCAAAC 58.202 33.333 0.00 0.00 0.00 2.93
2328 2608 8.519526 ACAAATCTAAAGTCGCCAAATATCAAA 58.480 29.630 0.00 0.00 0.00 2.69
2329 2609 7.967854 CACAAATCTAAAGTCGCCAAATATCAA 59.032 33.333 0.00 0.00 0.00 2.57
2330 2610 7.335673 TCACAAATCTAAAGTCGCCAAATATCA 59.664 33.333 0.00 0.00 0.00 2.15
2331 2611 7.693952 TCACAAATCTAAAGTCGCCAAATATC 58.306 34.615 0.00 0.00 0.00 1.63
2332 2612 7.201732 CCTCACAAATCTAAAGTCGCCAAATAT 60.202 37.037 0.00 0.00 0.00 1.28
2333 2613 6.093495 CCTCACAAATCTAAAGTCGCCAAATA 59.907 38.462 0.00 0.00 0.00 1.40
2334 2614 5.106157 CCTCACAAATCTAAAGTCGCCAAAT 60.106 40.000 0.00 0.00 0.00 2.32
2335 2615 4.215399 CCTCACAAATCTAAAGTCGCCAAA 59.785 41.667 0.00 0.00 0.00 3.28
2336 2616 3.751175 CCTCACAAATCTAAAGTCGCCAA 59.249 43.478 0.00 0.00 0.00 4.52
2337 2617 3.007506 TCCTCACAAATCTAAAGTCGCCA 59.992 43.478 0.00 0.00 0.00 5.69
2338 2618 3.371285 GTCCTCACAAATCTAAAGTCGCC 59.629 47.826 0.00 0.00 0.00 5.54
2339 2619 3.371285 GGTCCTCACAAATCTAAAGTCGC 59.629 47.826 0.00 0.00 0.00 5.19
2340 2620 4.566004 TGGTCCTCACAAATCTAAAGTCG 58.434 43.478 0.00 0.00 0.00 4.18
2341 2621 8.561738 TTAATGGTCCTCACAAATCTAAAGTC 57.438 34.615 0.00 0.00 0.00 3.01
2342 2622 8.934023 TTTAATGGTCCTCACAAATCTAAAGT 57.066 30.769 0.00 0.00 0.00 2.66
2349 2629 9.418045 CGTAAAATTTTAATGGTCCTCACAAAT 57.582 29.630 12.14 0.00 0.00 2.32
2350 2630 8.414778 ACGTAAAATTTTAATGGTCCTCACAAA 58.585 29.630 12.14 0.00 0.00 2.83
2351 2631 7.942990 ACGTAAAATTTTAATGGTCCTCACAA 58.057 30.769 12.14 0.00 0.00 3.33
2352 2632 7.446013 AGACGTAAAATTTTAATGGTCCTCACA 59.554 33.333 21.99 0.00 0.00 3.58
2353 2633 7.813645 AGACGTAAAATTTTAATGGTCCTCAC 58.186 34.615 21.99 8.06 0.00 3.51
2354 2634 7.989416 AGACGTAAAATTTTAATGGTCCTCA 57.011 32.000 21.99 0.00 0.00 3.86
2391 2671 9.628500 ACAAGGAAAGTTTGTCTTTAAGTAGAT 57.372 29.630 0.00 0.00 45.15 1.98
2392 2672 9.106070 GACAAGGAAAGTTTGTCTTTAAGTAGA 57.894 33.333 10.05 0.00 46.78 2.59
2403 2683 6.542735 GGTTTCTAGAGACAAGGAAAGTTTGT 59.457 38.462 14.78 0.00 41.21 2.83
2404 2684 6.292919 CGGTTTCTAGAGACAAGGAAAGTTTG 60.293 42.308 14.78 0.00 0.00 2.93
2405 2685 5.758784 CGGTTTCTAGAGACAAGGAAAGTTT 59.241 40.000 14.78 0.00 0.00 2.66
2406 2686 5.070047 TCGGTTTCTAGAGACAAGGAAAGTT 59.930 40.000 14.78 0.00 0.00 2.66
2407 2687 4.587684 TCGGTTTCTAGAGACAAGGAAAGT 59.412 41.667 14.78 0.00 0.00 2.66
2408 2688 4.924462 GTCGGTTTCTAGAGACAAGGAAAG 59.076 45.833 14.78 0.00 34.09 2.62
2409 2689 4.342951 TGTCGGTTTCTAGAGACAAGGAAA 59.657 41.667 14.78 2.27 40.19 3.13
2410 2690 3.893200 TGTCGGTTTCTAGAGACAAGGAA 59.107 43.478 14.78 0.00 40.19 3.36
2411 2691 3.255149 GTGTCGGTTTCTAGAGACAAGGA 59.745 47.826 14.78 6.40 43.96 3.36
2412 2692 3.005472 TGTGTCGGTTTCTAGAGACAAGG 59.995 47.826 14.78 4.32 43.96 3.61
2413 2693 4.238761 TGTGTCGGTTTCTAGAGACAAG 57.761 45.455 14.78 8.40 43.96 3.16
2414 2694 4.523173 AGATGTGTCGGTTTCTAGAGACAA 59.477 41.667 14.78 6.50 42.52 3.18
2415 2695 4.079970 AGATGTGTCGGTTTCTAGAGACA 58.920 43.478 14.78 11.32 43.22 3.41
2416 2696 4.705337 AGATGTGTCGGTTTCTAGAGAC 57.295 45.455 4.83 4.83 0.00 3.36
2417 2697 4.639310 GGTAGATGTGTCGGTTTCTAGAGA 59.361 45.833 0.00 0.00 0.00 3.10
2418 2698 4.641094 AGGTAGATGTGTCGGTTTCTAGAG 59.359 45.833 0.00 0.00 0.00 2.43
2419 2699 4.398358 CAGGTAGATGTGTCGGTTTCTAGA 59.602 45.833 0.00 0.00 0.00 2.43
2420 2700 4.398358 TCAGGTAGATGTGTCGGTTTCTAG 59.602 45.833 0.00 0.00 0.00 2.43
2421 2701 4.338012 TCAGGTAGATGTGTCGGTTTCTA 58.662 43.478 0.00 0.00 0.00 2.10
2422 2702 3.162666 TCAGGTAGATGTGTCGGTTTCT 58.837 45.455 0.00 0.00 0.00 2.52
2423 2703 3.587797 TCAGGTAGATGTGTCGGTTTC 57.412 47.619 0.00 0.00 0.00 2.78
2424 2704 3.576982 TCTTCAGGTAGATGTGTCGGTTT 59.423 43.478 0.00 0.00 0.00 3.27
2425 2705 3.056749 GTCTTCAGGTAGATGTGTCGGTT 60.057 47.826 0.00 0.00 0.00 4.44
2426 2706 2.492484 GTCTTCAGGTAGATGTGTCGGT 59.508 50.000 0.00 0.00 0.00 4.69
2427 2707 2.159226 GGTCTTCAGGTAGATGTGTCGG 60.159 54.545 0.00 0.00 0.00 4.79
2428 2708 2.478031 CGGTCTTCAGGTAGATGTGTCG 60.478 54.545 0.00 0.00 0.00 4.35
2429 2709 2.753452 TCGGTCTTCAGGTAGATGTGTC 59.247 50.000 0.00 0.00 0.00 3.67
2430 2710 2.803956 TCGGTCTTCAGGTAGATGTGT 58.196 47.619 0.00 0.00 0.00 3.72
2431 2711 5.515797 TTATCGGTCTTCAGGTAGATGTG 57.484 43.478 0.00 0.00 0.00 3.21
2432 2712 7.005296 AGTATTATCGGTCTTCAGGTAGATGT 58.995 38.462 0.00 0.00 0.00 3.06
2433 2713 7.455641 AGTATTATCGGTCTTCAGGTAGATG 57.544 40.000 0.00 0.00 0.00 2.90
2434 2714 6.372103 CGAGTATTATCGGTCTTCAGGTAGAT 59.628 42.308 0.00 0.00 39.04 1.98
2435 2715 5.699915 CGAGTATTATCGGTCTTCAGGTAGA 59.300 44.000 0.00 0.00 39.04 2.59
2436 2716 5.699915 TCGAGTATTATCGGTCTTCAGGTAG 59.300 44.000 0.00 0.00 42.93 3.18
2437 2717 5.468072 GTCGAGTATTATCGGTCTTCAGGTA 59.532 44.000 0.00 0.00 42.93 3.08
2438 2718 4.275443 GTCGAGTATTATCGGTCTTCAGGT 59.725 45.833 0.00 0.00 42.93 4.00
2439 2719 4.610905 CGTCGAGTATTATCGGTCTTCAGG 60.611 50.000 0.00 0.00 42.93 3.86
2440 2720 4.456019 CGTCGAGTATTATCGGTCTTCAG 58.544 47.826 0.00 0.00 42.93 3.02
2441 2721 3.303593 GCGTCGAGTATTATCGGTCTTCA 60.304 47.826 0.00 0.00 42.93 3.02
2442 2722 3.224750 GCGTCGAGTATTATCGGTCTTC 58.775 50.000 0.00 0.00 42.93 2.87
2443 2723 2.615447 TGCGTCGAGTATTATCGGTCTT 59.385 45.455 0.00 0.00 42.93 3.01
2444 2724 2.032204 GTGCGTCGAGTATTATCGGTCT 60.032 50.000 0.00 0.00 42.93 3.85
2445 2725 2.305291 GTGCGTCGAGTATTATCGGTC 58.695 52.381 0.00 0.00 42.93 4.79
2446 2726 1.333524 CGTGCGTCGAGTATTATCGGT 60.334 52.381 0.00 0.00 42.93 4.69
2447 2727 1.315497 CGTGCGTCGAGTATTATCGG 58.685 55.000 0.00 0.00 42.93 4.18
2448 2728 1.070376 TCCGTGCGTCGAGTATTATCG 60.070 52.381 0.00 0.00 44.07 2.92
2449 2729 2.305291 GTCCGTGCGTCGAGTATTATC 58.695 52.381 0.00 0.00 42.86 1.75
2450 2730 1.002033 GGTCCGTGCGTCGAGTATTAT 60.002 52.381 0.00 0.00 42.86 1.28
2451 2731 0.378257 GGTCCGTGCGTCGAGTATTA 59.622 55.000 0.00 0.00 42.86 0.98
2452 2732 1.138247 GGTCCGTGCGTCGAGTATT 59.862 57.895 0.00 0.00 42.86 1.89
2453 2733 2.768492 GGGTCCGTGCGTCGAGTAT 61.768 63.158 0.00 0.00 42.86 2.12
2454 2734 3.434319 GGGTCCGTGCGTCGAGTA 61.434 66.667 0.00 0.00 42.86 2.59
2456 2736 4.778415 CAGGGTCCGTGCGTCGAG 62.778 72.222 0.00 0.00 42.86 4.04
2458 2738 4.129737 ATCAGGGTCCGTGCGTCG 62.130 66.667 6.70 0.00 39.52 5.12
2459 2739 2.509336 CATCAGGGTCCGTGCGTC 60.509 66.667 6.70 0.00 0.00 5.19
2460 2740 4.082523 CCATCAGGGTCCGTGCGT 62.083 66.667 6.70 0.00 0.00 5.24
2470 2750 3.258123 CCTGTTTGTAAAACCCCATCAGG 59.742 47.826 0.71 0.00 34.91 3.86
2471 2751 3.895041 ACCTGTTTGTAAAACCCCATCAG 59.105 43.478 0.71 0.00 0.00 2.90
2472 2752 3.639094 CACCTGTTTGTAAAACCCCATCA 59.361 43.478 0.71 0.00 0.00 3.07
2473 2753 3.639561 ACACCTGTTTGTAAAACCCCATC 59.360 43.478 0.71 0.00 0.00 3.51
2474 2754 3.386402 CACACCTGTTTGTAAAACCCCAT 59.614 43.478 0.71 0.00 0.00 4.00
2475 2755 2.761208 CACACCTGTTTGTAAAACCCCA 59.239 45.455 0.71 0.00 0.00 4.96
2476 2756 3.025262 TCACACCTGTTTGTAAAACCCC 58.975 45.455 0.71 0.00 0.00 4.95
2477 2757 3.697542 AGTCACACCTGTTTGTAAAACCC 59.302 43.478 0.71 0.00 0.00 4.11
2478 2758 4.976224 AGTCACACCTGTTTGTAAAACC 57.024 40.909 0.71 0.00 0.00 3.27
2479 2759 9.216117 AGATATAGTCACACCTGTTTGTAAAAC 57.784 33.333 0.00 0.00 0.00 2.43
2480 2760 9.431887 GAGATATAGTCACACCTGTTTGTAAAA 57.568 33.333 0.00 0.00 0.00 1.52
2481 2761 8.590204 TGAGATATAGTCACACCTGTTTGTAAA 58.410 33.333 0.00 0.00 0.00 2.01
2482 2762 8.129496 TGAGATATAGTCACACCTGTTTGTAA 57.871 34.615 0.00 0.00 0.00 2.41
2483 2763 7.712204 TGAGATATAGTCACACCTGTTTGTA 57.288 36.000 0.00 0.00 0.00 2.41
2484 2764 6.605471 TGAGATATAGTCACACCTGTTTGT 57.395 37.500 0.00 0.00 0.00 2.83
2485 2765 7.495901 AGATGAGATATAGTCACACCTGTTTG 58.504 38.462 0.00 0.00 30.05 2.93
2486 2766 7.667575 AGATGAGATATAGTCACACCTGTTT 57.332 36.000 0.00 0.00 30.05 2.83
2487 2767 7.780271 TGTAGATGAGATATAGTCACACCTGTT 59.220 37.037 0.00 0.00 30.05 3.16
2488 2768 7.290813 TGTAGATGAGATATAGTCACACCTGT 58.709 38.462 0.00 0.00 30.05 4.00
2489 2769 7.751768 TGTAGATGAGATATAGTCACACCTG 57.248 40.000 0.00 0.00 30.05 4.00
2490 2770 7.947332 ACATGTAGATGAGATATAGTCACACCT 59.053 37.037 6.90 0.00 33.36 4.00
2491 2771 8.026026 CACATGTAGATGAGATATAGTCACACC 58.974 40.741 6.90 0.00 33.36 4.16
2492 2772 8.787852 TCACATGTAGATGAGATATAGTCACAC 58.212 37.037 6.90 0.00 33.36 3.82
2493 2773 8.924511 TCACATGTAGATGAGATATAGTCACA 57.075 34.615 6.90 0.00 33.36 3.58
2494 2774 9.225436 TCTCACATGTAGATGAGATATAGTCAC 57.775 37.037 6.90 0.00 45.01 3.67
2504 2784 9.018582 TGAGGTATTATCTCACATGTAGATGAG 57.981 37.037 19.60 13.55 43.16 2.90
2505 2785 8.940397 TGAGGTATTATCTCACATGTAGATGA 57.060 34.615 19.60 14.99 36.46 2.92
2516 2796 9.367160 TCATGTTAGATGTGAGGTATTATCTCA 57.633 33.333 2.40 2.40 38.75 3.27
2517 2797 9.632807 GTCATGTTAGATGTGAGGTATTATCTC 57.367 37.037 0.00 0.00 32.54 2.75
2518 2798 9.147732 TGTCATGTTAGATGTGAGGTATTATCT 57.852 33.333 0.00 0.00 34.51 1.98
2519 2799 9.935241 ATGTCATGTTAGATGTGAGGTATTATC 57.065 33.333 0.00 0.00 0.00 1.75
2520 2800 9.935241 GATGTCATGTTAGATGTGAGGTATTAT 57.065 33.333 0.00 0.00 0.00 1.28
2521 2801 8.923270 TGATGTCATGTTAGATGTGAGGTATTA 58.077 33.333 0.00 0.00 0.00 0.98
2522 2802 7.795047 TGATGTCATGTTAGATGTGAGGTATT 58.205 34.615 0.00 0.00 0.00 1.89
2523 2803 7.365497 TGATGTCATGTTAGATGTGAGGTAT 57.635 36.000 0.00 0.00 0.00 2.73
2524 2804 6.790232 TGATGTCATGTTAGATGTGAGGTA 57.210 37.500 0.00 0.00 0.00 3.08
2525 2805 5.682234 TGATGTCATGTTAGATGTGAGGT 57.318 39.130 0.00 0.00 0.00 3.85
2526 2806 5.699915 GGATGATGTCATGTTAGATGTGAGG 59.300 44.000 0.00 0.00 36.57 3.86
2527 2807 6.522946 AGGATGATGTCATGTTAGATGTGAG 58.477 40.000 0.00 0.00 36.57 3.51
2528 2808 6.490241 AGGATGATGTCATGTTAGATGTGA 57.510 37.500 0.00 0.00 36.57 3.58
2529 2809 6.364435 CGTAGGATGATGTCATGTTAGATGTG 59.636 42.308 0.00 0.00 36.57 3.21
2530 2810 6.040955 ACGTAGGATGATGTCATGTTAGATGT 59.959 38.462 0.00 0.00 36.57 3.06
2531 2811 6.450545 ACGTAGGATGATGTCATGTTAGATG 58.549 40.000 0.00 0.00 36.57 2.90
2532 2812 6.656632 ACGTAGGATGATGTCATGTTAGAT 57.343 37.500 0.00 0.00 36.57 1.98
2533 2813 6.127451 ACAACGTAGGATGATGTCATGTTAGA 60.127 38.462 0.00 0.00 36.57 2.10
2534 2814 6.042777 ACAACGTAGGATGATGTCATGTTAG 58.957 40.000 0.00 0.00 36.57 2.34
2535 2815 5.972935 ACAACGTAGGATGATGTCATGTTA 58.027 37.500 0.00 0.00 36.57 2.41
2536 2816 4.832248 ACAACGTAGGATGATGTCATGTT 58.168 39.130 0.00 0.00 36.57 2.71
2537 2817 4.471904 ACAACGTAGGATGATGTCATGT 57.528 40.909 0.00 0.00 36.57 3.21
2538 2818 5.220662 GGAAACAACGTAGGATGATGTCATG 60.221 44.000 0.00 0.00 36.57 3.07
2539 2819 4.876107 GGAAACAACGTAGGATGATGTCAT 59.124 41.667 0.00 0.00 39.70 3.06
2540 2820 4.020573 AGGAAACAACGTAGGATGATGTCA 60.021 41.667 0.00 0.00 0.00 3.58
2541 2821 4.504858 AGGAAACAACGTAGGATGATGTC 58.495 43.478 0.00 0.00 0.00 3.06
2542 2822 4.223032 AGAGGAAACAACGTAGGATGATGT 59.777 41.667 0.00 0.00 0.00 3.06
2543 2823 4.759782 AGAGGAAACAACGTAGGATGATG 58.240 43.478 0.00 0.00 0.00 3.07
2544 2824 6.732896 ATAGAGGAAACAACGTAGGATGAT 57.267 37.500 0.00 0.00 0.00 2.45
2545 2825 6.070995 ACAATAGAGGAAACAACGTAGGATGA 60.071 38.462 0.00 0.00 0.00 2.92
2546 2826 6.106673 ACAATAGAGGAAACAACGTAGGATG 58.893 40.000 0.00 0.00 0.00 3.51
2547 2827 6.295719 ACAATAGAGGAAACAACGTAGGAT 57.704 37.500 0.00 0.00 0.00 3.24
2548 2828 5.733620 ACAATAGAGGAAACAACGTAGGA 57.266 39.130 0.00 0.00 0.00 2.94
2549 2829 5.929992 TCAACAATAGAGGAAACAACGTAGG 59.070 40.000 0.00 0.00 0.00 3.18
2550 2830 6.422701 TGTCAACAATAGAGGAAACAACGTAG 59.577 38.462 0.00 0.00 0.00 3.51
2551 2831 6.282167 TGTCAACAATAGAGGAAACAACGTA 58.718 36.000 0.00 0.00 0.00 3.57
2552 2832 5.120399 TGTCAACAATAGAGGAAACAACGT 58.880 37.500 0.00 0.00 0.00 3.99
2553 2833 5.666969 TGTCAACAATAGAGGAAACAACG 57.333 39.130 0.00 0.00 0.00 4.10
2554 2834 7.027778 AGTTGTCAACAATAGAGGAAACAAC 57.972 36.000 17.78 6.88 43.30 3.32
2555 2835 7.042321 CGTAGTTGTCAACAATAGAGGAAACAA 60.042 37.037 17.78 0.00 38.24 2.83
2556 2836 6.422701 CGTAGTTGTCAACAATAGAGGAAACA 59.577 38.462 17.78 0.00 38.24 2.83
2557 2837 6.423001 ACGTAGTTGTCAACAATAGAGGAAAC 59.577 38.462 17.78 0.34 37.78 2.78
2558 2838 6.518493 ACGTAGTTGTCAACAATAGAGGAAA 58.482 36.000 17.78 0.00 37.78 3.13
2559 2839 6.092955 ACGTAGTTGTCAACAATAGAGGAA 57.907 37.500 17.78 0.00 37.78 3.36
2560 2840 5.717078 ACGTAGTTGTCAACAATAGAGGA 57.283 39.130 17.78 0.00 37.78 3.71
2615 2895 2.539476 GTGACAAACAAACAAGCCTGG 58.461 47.619 0.00 0.00 0.00 4.45
2651 2931 2.098607 TGAGCTCCCGACTAATACAACG 59.901 50.000 12.15 0.00 0.00 4.10
2681 2961 0.584396 TCTTTGGTAGCGCGTTGTTG 59.416 50.000 8.43 0.00 0.00 3.33
2716 5930 3.121030 CCAGAAGTGCGCGAAGGG 61.121 66.667 12.10 0.00 46.11 3.95
2752 5966 0.108585 AAGAAGAAAGCAGCGTCCCA 59.891 50.000 0.00 0.00 0.00 4.37
2756 5970 4.639135 AAAAAGAAGAAGAAAGCAGCGT 57.361 36.364 0.00 0.00 0.00 5.07
2875 6097 8.265998 CGTGAACAGTTTTTGAATTCCATAAAC 58.734 33.333 14.45 14.45 42.90 2.01
2960 6182 9.703892 CCAATTAGTGTACATTTTTGGAATCAA 57.296 29.630 19.61 0.00 35.29 2.57
2962 6184 9.921637 TTCCAATTAGTGTACATTTTTGGAATC 57.078 29.630 26.78 4.95 43.27 2.52
3037 6279 8.452989 AATTCGTGAACATTTTCAGAATTAGC 57.547 30.769 19.37 0.67 42.60 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.