Multiple sequence alignment - TraesCS3D01G073600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G073600 chr3D 100.000 4298 0 0 1 4298 33375064 33370767 0.000000e+00 7938
1 TraesCS3D01G073600 chr3D 90.003 3331 300 19 260 3575 33356983 33353671 0.000000e+00 4276
2 TraesCS3D01G073600 chr3D 85.810 3122 395 25 266 3357 33335655 33332552 0.000000e+00 3267
3 TraesCS3D01G073600 chr3B 97.827 4142 87 3 1 4141 56132026 56127887 0.000000e+00 7147
4 TraesCS3D01G073600 chr3B 85.659 3103 396 30 266 3342 56071176 56068097 0.000000e+00 3219
5 TraesCS3D01G073600 chr3B 90.400 1750 167 1 260 2008 56080041 56078292 0.000000e+00 2300
6 TraesCS3D01G073600 chr3B 87.995 1591 155 24 2001 3575 56077957 56076387 0.000000e+00 1847
7 TraesCS3D01G073600 chr3B 95.808 167 7 0 4130 4296 169670916 169671082 1.970000e-68 270
8 TraesCS3D01G073600 chr3A 97.509 3975 72 8 1 3967 46026620 46022665 0.000000e+00 6767
9 TraesCS3D01G073600 chr3A 90.593 3104 280 4 260 3355 46009587 46006488 0.000000e+00 4104
10 TraesCS3D01G073600 chr3A 79.774 974 159 19 2402 3355 45940609 45939654 0.000000e+00 673
11 TraesCS3D01G073600 chr3A 87.220 446 57 0 436 881 45941055 45940610 3.830000e-140 508
12 TraesCS3D01G073600 chr3A 95.288 191 8 1 3951 4141 46013598 46013409 6.980000e-78 302
13 TraesCS3D01G073600 chr7D 98.795 166 2 0 4133 4298 168056875 168057040 3.250000e-76 296
14 TraesCS3D01G073600 chr7D 97.006 167 4 1 4133 4298 521647124 521646958 3.270000e-71 279
15 TraesCS3D01G073600 chr6D 98.225 169 2 1 4131 4298 42515015 42514847 1.170000e-75 294
16 TraesCS3D01G073600 chr6D 96.000 175 5 2 4126 4298 233679864 233680038 2.530000e-72 283
17 TraesCS3D01G073600 chr2D 98.182 165 3 0 4134 4298 212000577 212000741 5.440000e-74 289
18 TraesCS3D01G073600 chr7B 96.970 165 5 0 4134 4298 708713170 708713334 1.180000e-70 278
19 TraesCS3D01G073600 chr7B 93.296 179 9 3 4122 4298 453736195 453736372 1.190000e-65 261
20 TraesCS3D01G073600 chr2B 95.210 167 7 1 4133 4298 305767708 305767542 3.300000e-66 263


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G073600 chr3D 33370767 33375064 4297 True 7938.0 7938 100.0000 1 4298 1 chr3D.!!$R3 4297
1 TraesCS3D01G073600 chr3D 33353671 33356983 3312 True 4276.0 4276 90.0030 260 3575 1 chr3D.!!$R2 3315
2 TraesCS3D01G073600 chr3D 33332552 33335655 3103 True 3267.0 3267 85.8100 266 3357 1 chr3D.!!$R1 3091
3 TraesCS3D01G073600 chr3B 56127887 56132026 4139 True 7147.0 7147 97.8270 1 4141 1 chr3B.!!$R2 4140
4 TraesCS3D01G073600 chr3B 56068097 56071176 3079 True 3219.0 3219 85.6590 266 3342 1 chr3B.!!$R1 3076
5 TraesCS3D01G073600 chr3B 56076387 56080041 3654 True 2073.5 2300 89.1975 260 3575 2 chr3B.!!$R3 3315
6 TraesCS3D01G073600 chr3A 46022665 46026620 3955 True 6767.0 6767 97.5090 1 3967 1 chr3A.!!$R1 3966
7 TraesCS3D01G073600 chr3A 46006488 46013598 7110 True 2203.0 4104 92.9405 260 4141 2 chr3A.!!$R3 3881
8 TraesCS3D01G073600 chr3A 45939654 45941055 1401 True 590.5 673 83.4970 436 3355 2 chr3A.!!$R2 2919

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
311 4064 0.723414 CGCACTTGCATCGAAGTCAT 59.277 50.0 1.48 0.0 42.21 3.06 F
1642 5400 1.348064 TGCTGTAGCTTACTGGTGGT 58.652 50.0 5.38 0.0 42.66 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2108 6216 1.079543 CCTGTGGACTCTGGAAGCG 60.080 63.158 0.0 0.0 0.00 4.68 R
3540 7710 1.816835 CACTGCACTCCAGCATTTGAT 59.183 47.619 0.0 0.0 45.78 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
189 190 7.360185 GGAATTTAAGTCTCGAAGGTTCTTGAC 60.360 40.741 0.00 0.00 0.00 3.18
238 239 9.453572 AAATTATCACTCACTTATGCAGAGAAA 57.546 29.630 6.89 0.00 33.69 2.52
245 246 7.961827 CACTCACTTATGCAGAGAAAAGAATTC 59.038 37.037 6.89 0.00 33.69 2.17
311 4064 0.723414 CGCACTTGCATCGAAGTCAT 59.277 50.000 1.48 0.00 42.21 3.06
1346 5104 6.299141 TGCTTATGAAGAAGTCCTTTCAGTT 58.701 36.000 0.00 0.00 38.31 3.16
1642 5400 1.348064 TGCTGTAGCTTACTGGTGGT 58.652 50.000 5.38 0.00 42.66 4.16
2108 6216 9.757227 AGATCTGAGCTATACTGAAATTAACAC 57.243 33.333 0.00 0.00 0.00 3.32
2720 6834 9.950496 AGAATTGCTAGTTCTTCAGATTAAAGA 57.050 29.630 0.00 0.00 32.17 2.52
3346 7484 9.478768 AAAAACTTGCTCTAGTTCTACTACTTC 57.521 33.333 0.00 0.00 37.37 3.01
3431 7596 6.374417 TCCTTCTTACAGGCTTACAAGATT 57.626 37.500 3.74 0.00 33.35 2.40
3540 7710 2.026262 GGCAATGGGAGGTCTCTGTTTA 60.026 50.000 0.00 0.00 0.00 2.01
3676 7846 7.038445 TCCTCAGAATCCTTCATCATATCTTCC 60.038 40.741 0.00 0.00 0.00 3.46
3788 7958 8.746751 GCTTTTTCTCTGTAACATTTGTTCTTC 58.253 33.333 0.00 0.00 39.31 2.87
3845 8015 1.175983 TGGGCTGCCTACAAAAACGG 61.176 55.000 19.68 0.00 0.00 4.44
3847 8017 1.442017 GCTGCCTACAAAAACGGCG 60.442 57.895 4.80 4.80 46.67 6.46
3929 8099 9.474920 TTGATTTTCAAATGGCTTTTGTACTAG 57.525 29.630 20.96 0.00 44.25 2.57
3956 8126 6.379133 ACTTTGAGGAACGTGACTATATGGTA 59.621 38.462 0.00 0.00 0.00 3.25
3960 8130 6.548251 TGAGGAACGTGACTATATGGTATCAA 59.452 38.462 0.00 0.00 0.00 2.57
4033 8203 4.386652 GCACCTTTGTTATGCTTGTCAATG 59.613 41.667 0.00 0.00 36.40 2.82
4065 8235 0.618680 TAGGCAGGCACTCATCTGGT 60.619 55.000 0.00 0.00 34.60 4.00
4089 8259 4.918810 ATGTTTGGAGTTGTGGTTCTTC 57.081 40.909 0.00 0.00 0.00 2.87
4105 8275 5.073428 GGTTCTTCTCTTGGGAGTGAAAAT 58.927 41.667 0.00 0.00 40.29 1.82
4135 8305 9.571816 AGGCGATCTAAACTACTAGTAATAACT 57.428 33.333 3.76 0.00 39.91 2.24
4150 8320 9.784680 CTAGTAATAACTAGTATAATGCCCGTG 57.215 37.037 0.00 0.00 46.90 4.94
4151 8321 7.095270 AGTAATAACTAGTATAATGCCCGTGC 58.905 38.462 0.00 0.00 32.84 5.34
4152 8322 2.433868 ACTAGTATAATGCCCGTGCG 57.566 50.000 0.00 0.00 41.78 5.34
4153 8323 1.684983 ACTAGTATAATGCCCGTGCGT 59.315 47.619 0.00 0.00 41.78 5.24
4155 8325 1.295792 AGTATAATGCCCGTGCGTTG 58.704 50.000 7.64 0.00 46.06 4.10
4156 8326 0.316689 GTATAATGCCCGTGCGTTGC 60.317 55.000 7.64 0.00 46.06 4.17
4157 8327 1.440938 TATAATGCCCGTGCGTTGCC 61.441 55.000 7.64 0.00 46.06 4.52
4178 8348 5.863898 GCCACGGGCTTTTAAAATATTTTG 58.136 37.500 21.19 7.50 46.69 2.44
4179 8349 5.672570 GCCACGGGCTTTTAAAATATTTTGC 60.673 40.000 21.19 15.62 46.69 3.68
4180 8350 5.641636 CCACGGGCTTTTAAAATATTTTGCT 59.358 36.000 21.19 0.19 0.00 3.91
4181 8351 6.402011 CCACGGGCTTTTAAAATATTTTGCTG 60.402 38.462 21.19 14.35 0.00 4.41
4182 8352 6.367422 CACGGGCTTTTAAAATATTTTGCTGA 59.633 34.615 21.19 0.71 0.00 4.26
4183 8353 6.931840 ACGGGCTTTTAAAATATTTTGCTGAA 59.068 30.769 21.19 6.71 0.00 3.02
4184 8354 7.117667 ACGGGCTTTTAAAATATTTTGCTGAAG 59.882 33.333 21.19 17.74 0.00 3.02
4185 8355 7.117667 CGGGCTTTTAAAATATTTTGCTGAAGT 59.882 33.333 21.19 0.00 0.00 3.01
4186 8356 8.783093 GGGCTTTTAAAATATTTTGCTGAAGTT 58.217 29.630 21.19 0.00 0.00 2.66
4223 8393 9.950680 AACACAAGTTAAATTTCACATGTAGAG 57.049 29.630 11.75 4.75 35.85 2.43
4224 8394 9.337396 ACACAAGTTAAATTTCACATGTAGAGA 57.663 29.630 11.75 0.00 0.00 3.10
4234 8404 7.525688 TTTCACATGTAGAGAAAAGATAGCG 57.474 36.000 0.00 0.00 34.53 4.26
4235 8405 6.208988 TCACATGTAGAGAAAAGATAGCGT 57.791 37.500 0.00 0.00 0.00 5.07
4236 8406 6.036470 TCACATGTAGAGAAAAGATAGCGTG 58.964 40.000 0.00 0.00 0.00 5.34
4237 8407 5.233050 CACATGTAGAGAAAAGATAGCGTGG 59.767 44.000 0.00 0.00 0.00 4.94
4238 8408 4.386867 TGTAGAGAAAAGATAGCGTGGG 57.613 45.455 0.00 0.00 0.00 4.61
4239 8409 2.317530 AGAGAAAAGATAGCGTGGGC 57.682 50.000 0.00 0.00 40.37 5.36
4240 8410 1.555075 AGAGAAAAGATAGCGTGGGCA 59.445 47.619 0.00 0.00 43.41 5.36
4241 8411 2.171448 AGAGAAAAGATAGCGTGGGCAT 59.829 45.455 0.00 0.00 43.41 4.40
4242 8412 3.388024 AGAGAAAAGATAGCGTGGGCATA 59.612 43.478 0.00 0.00 43.41 3.14
4243 8413 4.127171 GAGAAAAGATAGCGTGGGCATAA 58.873 43.478 0.00 0.00 43.41 1.90
4244 8414 4.718961 AGAAAAGATAGCGTGGGCATAAT 58.281 39.130 0.00 0.00 43.41 1.28
4245 8415 5.133221 AGAAAAGATAGCGTGGGCATAATT 58.867 37.500 0.00 0.00 43.41 1.40
4246 8416 4.836125 AAAGATAGCGTGGGCATAATTG 57.164 40.909 0.00 0.00 43.41 2.32
4247 8417 2.783135 AGATAGCGTGGGCATAATTGG 58.217 47.619 0.00 0.00 43.41 3.16
4248 8418 1.812571 GATAGCGTGGGCATAATTGGG 59.187 52.381 0.00 0.00 43.41 4.12
4249 8419 0.548989 TAGCGTGGGCATAATTGGGT 59.451 50.000 0.00 0.00 43.41 4.51
4250 8420 0.548989 AGCGTGGGCATAATTGGGTA 59.451 50.000 0.00 0.00 43.41 3.69
4251 8421 1.064314 AGCGTGGGCATAATTGGGTAA 60.064 47.619 0.00 0.00 43.41 2.85
4252 8422 1.960689 GCGTGGGCATAATTGGGTAAT 59.039 47.619 0.00 0.00 39.62 1.89
4253 8423 3.150767 GCGTGGGCATAATTGGGTAATA 58.849 45.455 0.00 0.00 39.62 0.98
4254 8424 3.570550 GCGTGGGCATAATTGGGTAATAA 59.429 43.478 0.00 0.00 39.62 1.40
4255 8425 4.219725 GCGTGGGCATAATTGGGTAATAAT 59.780 41.667 0.00 0.00 39.62 1.28
4256 8426 5.279256 GCGTGGGCATAATTGGGTAATAATT 60.279 40.000 0.00 0.00 39.62 1.40
4257 8427 6.155827 CGTGGGCATAATTGGGTAATAATTG 58.844 40.000 0.00 0.00 0.00 2.32
4258 8428 6.015856 CGTGGGCATAATTGGGTAATAATTGA 60.016 38.462 0.00 0.00 0.00 2.57
4259 8429 7.470702 CGTGGGCATAATTGGGTAATAATTGAA 60.471 37.037 0.00 0.00 0.00 2.69
4260 8430 7.872483 GTGGGCATAATTGGGTAATAATTGAAG 59.128 37.037 0.00 0.00 0.00 3.02
4261 8431 7.566879 TGGGCATAATTGGGTAATAATTGAAGT 59.433 33.333 0.00 0.00 0.00 3.01
4262 8432 8.088365 GGGCATAATTGGGTAATAATTGAAGTC 58.912 37.037 0.00 0.00 0.00 3.01
4263 8433 8.088365 GGCATAATTGGGTAATAATTGAAGTCC 58.912 37.037 0.00 0.00 0.00 3.85
4264 8434 8.637986 GCATAATTGGGTAATAATTGAAGTCCA 58.362 33.333 0.00 0.00 0.00 4.02
4265 8435 9.965824 CATAATTGGGTAATAATTGAAGTCCAC 57.034 33.333 0.00 0.00 0.00 4.02
4266 8436 9.936329 ATAATTGGGTAATAATTGAAGTCCACT 57.064 29.630 0.00 0.00 0.00 4.00
4267 8437 8.664669 AATTGGGTAATAATTGAAGTCCACTT 57.335 30.769 0.00 0.00 39.23 3.16
4277 8447 2.550830 AAGTCCACTTCACTCGCAAT 57.449 45.000 0.00 0.00 0.00 3.56
4278 8448 1.800805 AGTCCACTTCACTCGCAATG 58.199 50.000 0.00 0.00 0.00 2.82
4279 8449 1.070758 AGTCCACTTCACTCGCAATGT 59.929 47.619 0.00 0.00 0.00 2.71
4280 8450 2.299013 AGTCCACTTCACTCGCAATGTA 59.701 45.455 0.00 0.00 0.00 2.29
4281 8451 3.064207 GTCCACTTCACTCGCAATGTAA 58.936 45.455 0.00 0.00 0.00 2.41
4282 8452 3.496884 GTCCACTTCACTCGCAATGTAAA 59.503 43.478 0.00 0.00 0.00 2.01
4283 8453 4.154195 GTCCACTTCACTCGCAATGTAAAT 59.846 41.667 0.00 0.00 0.00 1.40
4284 8454 4.759693 TCCACTTCACTCGCAATGTAAATT 59.240 37.500 0.00 0.00 0.00 1.82
4285 8455 4.853196 CCACTTCACTCGCAATGTAAATTG 59.147 41.667 0.81 0.81 34.79 2.32
4286 8456 5.334802 CCACTTCACTCGCAATGTAAATTGA 60.335 40.000 9.96 0.00 33.55 2.57
4287 8457 6.317088 CACTTCACTCGCAATGTAAATTGAT 58.683 36.000 9.96 0.00 33.55 2.57
4288 8458 6.803320 CACTTCACTCGCAATGTAAATTGATT 59.197 34.615 9.96 0.00 33.55 2.57
4289 8459 7.962373 CACTTCACTCGCAATGTAAATTGATTA 59.038 33.333 9.96 0.00 33.55 1.75
4290 8460 8.511321 ACTTCACTCGCAATGTAAATTGATTAA 58.489 29.630 9.96 0.00 33.55 1.40
4291 8461 9.340695 CTTCACTCGCAATGTAAATTGATTAAA 57.659 29.630 9.96 0.00 33.55 1.52
4292 8462 9.684448 TTCACTCGCAATGTAAATTGATTAAAA 57.316 25.926 9.96 0.00 33.55 1.52
4293 8463 9.684448 TCACTCGCAATGTAAATTGATTAAAAA 57.316 25.926 9.96 0.00 33.55 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
238 239 5.163426 TGTGCAAATTGTCCACAGAATTCTT 60.163 36.000 4.86 0.00 34.82 2.52
311 4064 5.397447 CCATAGTGGGCAAACTAATGGACTA 60.397 44.000 15.26 0.00 36.28 2.59
1246 5004 5.471556 TGCATTTCTGACAAAACATCCAT 57.528 34.783 0.00 0.00 0.00 3.41
1346 5104 5.000591 TGAATTCACTTATTTGCTCGGACA 58.999 37.500 3.38 0.00 0.00 4.02
1512 5270 1.217942 AGTGGGCCTCCAAGTTCTTTT 59.782 47.619 4.53 0.00 46.04 2.27
1642 5400 1.407258 CCTCACAAAACCTTCGGCAAA 59.593 47.619 0.00 0.00 0.00 3.68
2108 6216 1.079543 CCTGTGGACTCTGGAAGCG 60.080 63.158 0.00 0.00 0.00 4.68
2720 6834 6.183360 GCCAATAGTTACAACTTCATCTGCAT 60.183 38.462 0.00 0.00 40.37 3.96
2800 6914 2.629137 TGCCAATGATGTGAAGCAGTTT 59.371 40.909 0.00 0.00 0.00 2.66
3431 7596 4.875536 CCATCATGTCTTCAATACGAACCA 59.124 41.667 0.00 0.00 0.00 3.67
3540 7710 1.816835 CACTGCACTCCAGCATTTGAT 59.183 47.619 0.00 0.00 45.78 2.57
3676 7846 1.134699 TCCATAGCACTTCAAGGCTCG 60.135 52.381 3.88 0.00 41.41 5.03
3788 7958 5.180117 CCTGAACTCCACAAGAACACAATAG 59.820 44.000 0.00 0.00 0.00 1.73
3791 7961 3.278574 CCTGAACTCCACAAGAACACAA 58.721 45.455 0.00 0.00 0.00 3.33
3845 8015 4.670227 AAAACTAATGAGCTTCTGACGC 57.330 40.909 0.00 0.00 0.00 5.19
3847 8017 6.560253 TCCAAAAACTAATGAGCTTCTGAC 57.440 37.500 0.00 0.00 0.00 3.51
3929 8099 1.583054 AGTCACGTTCCTCAAAGTGC 58.417 50.000 0.00 0.00 40.63 4.40
3956 8126 7.308830 GCAGACATCTGTTTAACTTTCCTTGAT 60.309 37.037 10.50 0.00 45.45 2.57
3960 8130 5.625150 AGCAGACATCTGTTTAACTTTCCT 58.375 37.500 10.50 0.00 45.45 3.36
4012 8182 5.068987 ACACATTGACAAGCATAACAAAGGT 59.931 36.000 0.00 0.00 0.00 3.50
4033 8203 2.736400 GCCTGCCTAATTTCATGCACAC 60.736 50.000 0.00 0.00 0.00 3.82
4065 8235 7.458397 AGAAGAACCACAACTCCAAACATATA 58.542 34.615 0.00 0.00 0.00 0.86
4089 8259 5.619981 CGCCTTAAATTTTCACTCCCAAGAG 60.620 44.000 0.00 0.00 46.36 2.85
4135 8305 2.475818 CAACGCACGGGCATTATACTA 58.524 47.619 11.77 0.00 41.24 1.82
4136 8306 1.295792 CAACGCACGGGCATTATACT 58.704 50.000 11.77 0.00 41.24 2.12
4137 8307 0.316689 GCAACGCACGGGCATTATAC 60.317 55.000 11.77 0.00 41.24 1.47
4138 8308 1.440938 GGCAACGCACGGGCATTATA 61.441 55.000 11.77 0.00 41.24 0.98
4139 8309 2.770589 GGCAACGCACGGGCATTAT 61.771 57.895 11.77 0.00 41.24 1.28
4140 8310 3.436055 GGCAACGCACGGGCATTA 61.436 61.111 11.77 0.00 41.24 1.90
4156 8326 5.641636 AGCAAAATATTTTAAAAGCCCGTGG 59.358 36.000 12.98 0.00 0.00 4.94
4157 8327 6.367422 TCAGCAAAATATTTTAAAAGCCCGTG 59.633 34.615 12.98 7.47 0.00 4.94
4158 8328 6.459923 TCAGCAAAATATTTTAAAAGCCCGT 58.540 32.000 12.98 0.00 0.00 5.28
4159 8329 6.959671 TCAGCAAAATATTTTAAAAGCCCG 57.040 33.333 12.98 7.21 0.00 6.13
4160 8330 8.322906 ACTTCAGCAAAATATTTTAAAAGCCC 57.677 30.769 12.98 0.00 0.00 5.19
4197 8367 9.950680 CTCTACATGTGAAATTTAACTTGTGTT 57.049 29.630 26.48 10.95 35.96 3.32
4198 8368 9.337396 TCTCTACATGTGAAATTTAACTTGTGT 57.663 29.630 26.48 19.61 35.96 3.72
4208 8378 8.607459 CGCTATCTTTTCTCTACATGTGAAATT 58.393 33.333 9.11 1.80 37.79 1.82
4209 8379 7.766278 ACGCTATCTTTTCTCTACATGTGAAAT 59.234 33.333 9.11 0.00 37.79 2.17
4210 8380 7.063426 CACGCTATCTTTTCTCTACATGTGAAA 59.937 37.037 9.11 7.17 36.67 2.69
4211 8381 6.531594 CACGCTATCTTTTCTCTACATGTGAA 59.468 38.462 9.11 0.24 0.00 3.18
4212 8382 6.036470 CACGCTATCTTTTCTCTACATGTGA 58.964 40.000 9.11 3.24 0.00 3.58
4213 8383 5.233050 CCACGCTATCTTTTCTCTACATGTG 59.767 44.000 9.11 0.00 0.00 3.21
4214 8384 5.352284 CCACGCTATCTTTTCTCTACATGT 58.648 41.667 2.69 2.69 0.00 3.21
4215 8385 4.747108 CCCACGCTATCTTTTCTCTACATG 59.253 45.833 0.00 0.00 0.00 3.21
4216 8386 4.740934 GCCCACGCTATCTTTTCTCTACAT 60.741 45.833 0.00 0.00 0.00 2.29
4217 8387 3.430374 GCCCACGCTATCTTTTCTCTACA 60.430 47.826 0.00 0.00 0.00 2.74
4218 8388 3.124560 GCCCACGCTATCTTTTCTCTAC 58.875 50.000 0.00 0.00 0.00 2.59
4219 8389 2.764010 TGCCCACGCTATCTTTTCTCTA 59.236 45.455 0.00 0.00 35.36 2.43
4220 8390 1.555075 TGCCCACGCTATCTTTTCTCT 59.445 47.619 0.00 0.00 35.36 3.10
4221 8391 2.024176 TGCCCACGCTATCTTTTCTC 57.976 50.000 0.00 0.00 35.36 2.87
4222 8392 2.717639 ATGCCCACGCTATCTTTTCT 57.282 45.000 0.00 0.00 35.36 2.52
4223 8393 5.215160 CAATTATGCCCACGCTATCTTTTC 58.785 41.667 0.00 0.00 35.36 2.29
4224 8394 4.037923 CCAATTATGCCCACGCTATCTTTT 59.962 41.667 0.00 0.00 35.36 2.27
4225 8395 3.569701 CCAATTATGCCCACGCTATCTTT 59.430 43.478 0.00 0.00 35.36 2.52
4226 8396 3.149196 CCAATTATGCCCACGCTATCTT 58.851 45.455 0.00 0.00 35.36 2.40
4227 8397 2.553028 CCCAATTATGCCCACGCTATCT 60.553 50.000 0.00 0.00 35.36 1.98
4228 8398 1.812571 CCCAATTATGCCCACGCTATC 59.187 52.381 0.00 0.00 35.36 2.08
4229 8399 1.144913 ACCCAATTATGCCCACGCTAT 59.855 47.619 0.00 0.00 35.36 2.97
4230 8400 0.548989 ACCCAATTATGCCCACGCTA 59.451 50.000 0.00 0.00 35.36 4.26
4231 8401 0.548989 TACCCAATTATGCCCACGCT 59.451 50.000 0.00 0.00 35.36 5.07
4232 8402 1.394618 TTACCCAATTATGCCCACGC 58.605 50.000 0.00 0.00 0.00 5.34
4233 8403 5.975693 ATTATTACCCAATTATGCCCACG 57.024 39.130 0.00 0.00 0.00 4.94
4234 8404 7.296628 TCAATTATTACCCAATTATGCCCAC 57.703 36.000 0.00 0.00 0.00 4.61
4235 8405 7.566879 ACTTCAATTATTACCCAATTATGCCCA 59.433 33.333 0.00 0.00 0.00 5.36
4236 8406 7.962441 ACTTCAATTATTACCCAATTATGCCC 58.038 34.615 0.00 0.00 0.00 5.36
4237 8407 8.088365 GGACTTCAATTATTACCCAATTATGCC 58.912 37.037 0.00 0.00 0.00 4.40
4238 8408 8.637986 TGGACTTCAATTATTACCCAATTATGC 58.362 33.333 0.00 0.00 0.00 3.14
4239 8409 9.965824 GTGGACTTCAATTATTACCCAATTATG 57.034 33.333 0.00 0.00 0.00 1.90
4240 8410 9.936329 AGTGGACTTCAATTATTACCCAATTAT 57.064 29.630 0.00 0.00 0.00 1.28
4241 8411 9.762381 AAGTGGACTTCAATTATTACCCAATTA 57.238 29.630 0.00 0.00 31.28 1.40
4242 8412 8.664669 AAGTGGACTTCAATTATTACCCAATT 57.335 30.769 0.00 0.00 31.28 2.32
4258 8428 2.146342 CATTGCGAGTGAAGTGGACTT 58.854 47.619 0.00 0.00 39.23 3.01
4259 8429 1.070758 ACATTGCGAGTGAAGTGGACT 59.929 47.619 0.00 0.00 0.00 3.85
4260 8430 1.512926 ACATTGCGAGTGAAGTGGAC 58.487 50.000 0.00 0.00 0.00 4.02
4261 8431 3.394674 TTACATTGCGAGTGAAGTGGA 57.605 42.857 0.00 0.00 0.00 4.02
4262 8432 4.685169 ATTTACATTGCGAGTGAAGTGG 57.315 40.909 0.00 0.00 0.00 4.00
4263 8433 5.688823 TCAATTTACATTGCGAGTGAAGTG 58.311 37.500 0.00 0.00 39.90 3.16
4264 8434 5.940192 TCAATTTACATTGCGAGTGAAGT 57.060 34.783 0.00 0.00 39.90 3.01
4265 8435 8.894409 TTAATCAATTTACATTGCGAGTGAAG 57.106 30.769 0.00 0.00 39.90 3.02
4266 8436 9.684448 TTTTAATCAATTTACATTGCGAGTGAA 57.316 25.926 0.00 0.00 39.90 3.18
4267 8437 9.684448 TTTTTAATCAATTTACATTGCGAGTGA 57.316 25.926 0.00 0.00 39.90 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.