Multiple sequence alignment - TraesCS3D01G073400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G073400 chr3D 100.000 3158 0 0 1 3158 33331491 33328334 0.000000e+00 5832
1 TraesCS3D01G073400 chr3A 95.693 2252 89 7 909 3158 45938059 45935814 0.000000e+00 3615
2 TraesCS3D01G073400 chr3A 91.578 843 50 8 2221 3054 45934759 45933929 0.000000e+00 1144
3 TraesCS3D01G073400 chr3A 89.381 452 29 14 337 782 45938960 45938522 4.600000e-153 551
4 TraesCS3D01G073400 chr3A 96.117 103 4 0 3056 3158 45933687 45933585 5.420000e-38 169
5 TraesCS3D01G073400 chr3A 95.146 103 5 0 3056 3158 45933845 45933743 2.520000e-36 163
6 TraesCS3D01G073400 chr6D 83.904 1168 176 8 994 2158 8397158 8396000 0.000000e+00 1105
7 TraesCS3D01G073400 chr6D 80.120 1494 273 20 965 2452 8552830 8551355 0.000000e+00 1092
8 TraesCS3D01G073400 chr6D 83.619 1166 174 9 994 2158 8899522 8900671 0.000000e+00 1079
9 TraesCS3D01G073400 chr6D 81.558 1258 211 15 947 2192 8893998 8895246 0.000000e+00 1018
10 TraesCS3D01G073400 chr6D 92.604 338 22 2 1 336 30534014 30533678 1.700000e-132 483
11 TraesCS3D01G073400 chr6D 78.289 304 35 12 2694 2967 8916499 8916801 1.950000e-37 167
12 TraesCS3D01G073400 chr6D 94.505 91 5 0 2694 2784 33896484 33896574 1.180000e-29 141
13 TraesCS3D01G073400 chr6B 83.333 1206 190 7 955 2158 52568284 52567088 0.000000e+00 1103
14 TraesCS3D01G073400 chr6B 83.151 1098 182 1 1095 2192 15225632 15224538 0.000000e+00 1000
15 TraesCS3D01G073400 chr6B 82.192 1168 199 7 994 2158 16429000 16430161 0.000000e+00 996
16 TraesCS3D01G073400 chr6B 77.972 1489 287 33 977 2452 16433127 16434587 0.000000e+00 894
17 TraesCS3D01G073400 chr6B 93.478 92 6 0 2693 2784 15713776 15713685 1.530000e-28 137
18 TraesCS3D01G073400 chr6B 92.308 91 7 0 2694 2784 16322030 16322120 2.560000e-26 130
19 TraesCS3D01G073400 chr6A 82.515 1201 203 4 994 2192 35581602 35580407 0.000000e+00 1048
20 TraesCS3D01G073400 chr6A 93.787 338 18 2 2 337 346595774 346596110 3.640000e-139 505
21 TraesCS3D01G073400 chr6A 76.400 911 187 22 1549 2452 9474626 9475515 1.720000e-127 466
22 TraesCS3D01G073400 chr1B 82.270 1207 198 12 994 2192 630644742 630645940 0.000000e+00 1029
23 TraesCS3D01G073400 chr5B 78.639 1484 256 43 997 2452 556795752 556794302 0.000000e+00 928
24 TraesCS3D01G073400 chr5B 80.220 182 17 5 2697 2861 621236827 621236648 5.530000e-23 119
25 TraesCS3D01G073400 chr2D 93.003 343 22 1 1 341 42736519 42736861 1.690000e-137 499
26 TraesCS3D01G073400 chr2D 90.960 354 29 2 1 352 588223512 588223160 1.030000e-129 473
27 TraesCS3D01G073400 chrUn 93.195 338 20 2 1 336 110779795 110779459 7.870000e-136 494
28 TraesCS3D01G073400 chrUn 80.925 346 55 8 2108 2452 42220936 42220601 2.420000e-66 263
29 TraesCS3D01G073400 chr7D 92.733 344 21 2 1 342 602845554 602845213 7.870000e-136 494
30 TraesCS3D01G073400 chr7D 91.884 345 23 3 1 343 29889890 29890231 7.920000e-131 477
31 TraesCS3D01G073400 chr5D 92.604 338 23 1 1 336 534087631 534087968 4.740000e-133 484
32 TraesCS3D01G073400 chr5D 92.135 89 6 1 2697 2785 499863635 499863548 1.190000e-24 124
33 TraesCS3D01G073400 chr2A 92.604 338 22 2 1 336 732990488 732990152 1.700000e-132 483
34 TraesCS3D01G073400 chr2B 74.923 646 146 12 1729 2370 89491343 89491976 6.670000e-72 281
35 TraesCS3D01G073400 chr5A 92.135 89 6 1 2697 2785 624204269 624204182 1.190000e-24 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G073400 chr3D 33328334 33331491 3157 True 5832.0 5832 100.000 1 3158 1 chr3D.!!$R1 3157
1 TraesCS3D01G073400 chr3A 45933585 45938960 5375 True 1128.4 3615 93.583 337 3158 5 chr3A.!!$R1 2821
2 TraesCS3D01G073400 chr6D 8396000 8397158 1158 True 1105.0 1105 83.904 994 2158 1 chr6D.!!$R1 1164
3 TraesCS3D01G073400 chr6D 8551355 8552830 1475 True 1092.0 1092 80.120 965 2452 1 chr6D.!!$R2 1487
4 TraesCS3D01G073400 chr6D 8899522 8900671 1149 False 1079.0 1079 83.619 994 2158 1 chr6D.!!$F2 1164
5 TraesCS3D01G073400 chr6D 8893998 8895246 1248 False 1018.0 1018 81.558 947 2192 1 chr6D.!!$F1 1245
6 TraesCS3D01G073400 chr6B 52567088 52568284 1196 True 1103.0 1103 83.333 955 2158 1 chr6B.!!$R3 1203
7 TraesCS3D01G073400 chr6B 15224538 15225632 1094 True 1000.0 1000 83.151 1095 2192 1 chr6B.!!$R1 1097
8 TraesCS3D01G073400 chr6B 16429000 16434587 5587 False 945.0 996 80.082 977 2452 2 chr6B.!!$F2 1475
9 TraesCS3D01G073400 chr6A 35580407 35581602 1195 True 1048.0 1048 82.515 994 2192 1 chr6A.!!$R1 1198
10 TraesCS3D01G073400 chr6A 9474626 9475515 889 False 466.0 466 76.400 1549 2452 1 chr6A.!!$F1 903
11 TraesCS3D01G073400 chr1B 630644742 630645940 1198 False 1029.0 1029 82.270 994 2192 1 chr1B.!!$F1 1198
12 TraesCS3D01G073400 chr5B 556794302 556795752 1450 True 928.0 928 78.639 997 2452 1 chr5B.!!$R1 1455
13 TraesCS3D01G073400 chr2B 89491343 89491976 633 False 281.0 281 74.923 1729 2370 1 chr2B.!!$F1 641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
256 257 0.036952 CTGCCTCGGTGTGTCAAGAT 60.037 55.0 0.0 0.0 0.0 2.40 F
924 1303 0.109723 AAAAAGGCCCACTACGCTCA 59.890 50.0 0.0 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1771 2176 0.038892 TCTGACCACCTAAACGTCGC 60.039 55.0 0.0 0.0 0.0 5.19 R
2528 9076 0.185901 TCTGCTTCCAACCAAAGGCT 59.814 50.0 0.0 0.0 0.0 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.419522 GTTGCCATGTGTGTTTACCTAG 57.580 45.455 0.00 0.00 0.00 3.02
22 23 3.780804 TGCCATGTGTGTTTACCTAGT 57.219 42.857 0.00 0.00 0.00 2.57
23 24 4.093472 TGCCATGTGTGTTTACCTAGTT 57.907 40.909 0.00 0.00 0.00 2.24
24 25 3.818210 TGCCATGTGTGTTTACCTAGTTG 59.182 43.478 0.00 0.00 0.00 3.16
25 26 3.365969 GCCATGTGTGTTTACCTAGTTGC 60.366 47.826 0.00 0.00 0.00 4.17
26 27 3.190535 CCATGTGTGTTTACCTAGTTGCC 59.809 47.826 0.00 0.00 0.00 4.52
27 28 3.562343 TGTGTGTTTACCTAGTTGCCA 57.438 42.857 0.00 0.00 0.00 4.92
28 29 3.472652 TGTGTGTTTACCTAGTTGCCAG 58.527 45.455 0.00 0.00 0.00 4.85
29 30 2.812011 GTGTGTTTACCTAGTTGCCAGG 59.188 50.000 0.00 0.00 39.25 4.45
31 32 3.647113 TGTGTTTACCTAGTTGCCAGGTA 59.353 43.478 0.00 0.00 44.77 3.08
32 33 3.999001 GTGTTTACCTAGTTGCCAGGTAC 59.001 47.826 0.74 0.00 46.05 3.34
33 34 3.647113 TGTTTACCTAGTTGCCAGGTACA 59.353 43.478 0.74 0.00 46.05 2.90
34 35 3.967332 TTACCTAGTTGCCAGGTACAC 57.033 47.619 0.74 0.00 46.05 2.90
35 36 0.606604 ACCTAGTTGCCAGGTACACG 59.393 55.000 0.00 0.00 44.77 4.49
36 37 0.739813 CCTAGTTGCCAGGTACACGC 60.740 60.000 0.00 0.00 0.00 5.34
37 38 0.037697 CTAGTTGCCAGGTACACGCA 60.038 55.000 0.00 0.00 32.88 5.24
38 39 0.393448 TAGTTGCCAGGTACACGCAA 59.607 50.000 8.82 8.82 41.18 4.85
39 40 3.739167 TTGCCAGGTACACGCAAC 58.261 55.556 8.82 0.00 39.16 4.17
40 41 1.147376 TTGCCAGGTACACGCAACT 59.853 52.632 8.82 0.00 39.16 3.16
41 42 1.163420 TTGCCAGGTACACGCAACTG 61.163 55.000 8.82 0.00 39.16 3.16
42 43 2.966309 GCCAGGTACACGCAACTGC 61.966 63.158 0.00 0.00 37.78 4.40
43 44 1.596752 CCAGGTACACGCAACTGCA 60.597 57.895 2.12 0.00 42.21 4.41
44 45 1.568612 CCAGGTACACGCAACTGCAG 61.569 60.000 13.48 13.48 42.21 4.41
45 46 0.880278 CAGGTACACGCAACTGCAGT 60.880 55.000 15.25 15.25 42.21 4.40
46 47 0.179056 AGGTACACGCAACTGCAGTT 60.179 50.000 26.36 26.36 42.21 3.16
56 57 1.242076 AACTGCAGTTGTCATCCAGC 58.758 50.000 30.66 0.00 36.80 4.85
57 58 0.109153 ACTGCAGTTGTCATCCAGCA 59.891 50.000 15.25 0.00 0.00 4.41
58 59 1.241165 CTGCAGTTGTCATCCAGCAA 58.759 50.000 5.25 0.00 0.00 3.91
59 60 0.953727 TGCAGTTGTCATCCAGCAAC 59.046 50.000 0.00 0.00 43.63 4.17
60 61 0.110056 GCAGTTGTCATCCAGCAACG 60.110 55.000 0.00 0.00 46.66 4.10
61 62 1.229428 CAGTTGTCATCCAGCAACGT 58.771 50.000 0.00 0.00 46.66 3.99
62 63 2.412870 CAGTTGTCATCCAGCAACGTA 58.587 47.619 0.00 0.00 46.66 3.57
63 64 2.157668 CAGTTGTCATCCAGCAACGTAC 59.842 50.000 0.00 0.00 46.66 3.67
64 65 1.126113 GTTGTCATCCAGCAACGTACG 59.874 52.381 15.01 15.01 36.15 3.67
65 66 0.599060 TGTCATCCAGCAACGTACGA 59.401 50.000 24.41 0.00 0.00 3.43
66 67 0.989890 GTCATCCAGCAACGTACGAC 59.010 55.000 24.41 10.85 0.00 4.34
67 68 0.885879 TCATCCAGCAACGTACGACT 59.114 50.000 24.41 13.08 0.00 4.18
68 69 0.992072 CATCCAGCAACGTACGACTG 59.008 55.000 24.41 22.91 0.00 3.51
69 70 0.601558 ATCCAGCAACGTACGACTGT 59.398 50.000 24.41 8.37 0.00 3.55
70 71 0.039798 TCCAGCAACGTACGACTGTC 60.040 55.000 24.41 13.57 0.00 3.51
71 72 1.334992 CCAGCAACGTACGACTGTCG 61.335 60.000 26.94 26.94 46.93 4.35
90 91 2.384899 GTGTGGACGAAAAGCAGTTC 57.615 50.000 0.00 0.00 0.00 3.01
95 96 3.339731 CGAAAAGCAGTTCGCCCA 58.660 55.556 8.58 0.00 43.38 5.36
96 97 1.082104 CGAAAAGCAGTTCGCCCAC 60.082 57.895 8.58 0.00 43.38 4.61
97 98 1.781025 CGAAAAGCAGTTCGCCCACA 61.781 55.000 8.58 0.00 43.38 4.17
98 99 0.598065 GAAAAGCAGTTCGCCCACAT 59.402 50.000 0.00 0.00 44.04 3.21
99 100 0.314935 AAAAGCAGTTCGCCCACATG 59.685 50.000 0.00 0.00 44.04 3.21
100 101 2.146073 AAAGCAGTTCGCCCACATGC 62.146 55.000 0.00 0.00 44.04 4.06
111 112 3.388134 CACATGCGCGTGGACTAG 58.612 61.111 31.55 13.09 33.05 2.57
112 113 2.167219 CACATGCGCGTGGACTAGG 61.167 63.158 31.55 11.12 33.05 3.02
113 114 2.184322 CATGCGCGTGGACTAGGT 59.816 61.111 22.09 0.00 0.00 3.08
114 115 2.167219 CATGCGCGTGGACTAGGTG 61.167 63.158 22.09 0.00 0.00 4.00
115 116 3.371097 ATGCGCGTGGACTAGGTGG 62.371 63.158 8.43 0.00 0.00 4.61
116 117 4.065281 GCGCGTGGACTAGGTGGT 62.065 66.667 8.43 0.00 0.00 4.16
117 118 2.126071 CGCGTGGACTAGGTGGTG 60.126 66.667 0.00 0.00 0.00 4.17
118 119 2.264794 GCGTGGACTAGGTGGTGG 59.735 66.667 0.00 0.00 0.00 4.61
119 120 2.264794 CGTGGACTAGGTGGTGGC 59.735 66.667 0.00 0.00 0.00 5.01
120 121 2.283529 CGTGGACTAGGTGGTGGCT 61.284 63.158 0.00 0.00 0.00 4.75
121 122 1.296715 GTGGACTAGGTGGTGGCTG 59.703 63.158 0.00 0.00 0.00 4.85
122 123 1.152118 TGGACTAGGTGGTGGCTGT 60.152 57.895 0.00 0.00 0.00 4.40
123 124 1.296715 GGACTAGGTGGTGGCTGTG 59.703 63.158 0.00 0.00 0.00 3.66
124 125 1.481056 GGACTAGGTGGTGGCTGTGT 61.481 60.000 0.00 0.00 0.00 3.72
125 126 0.320771 GACTAGGTGGTGGCTGTGTG 60.321 60.000 0.00 0.00 0.00 3.82
126 127 1.003355 CTAGGTGGTGGCTGTGTGG 60.003 63.158 0.00 0.00 0.00 4.17
127 128 2.469465 CTAGGTGGTGGCTGTGTGGG 62.469 65.000 0.00 0.00 0.00 4.61
129 130 4.892965 GTGGTGGCTGTGTGGGCA 62.893 66.667 0.00 0.00 39.45 5.36
130 131 4.584518 TGGTGGCTGTGTGGGCAG 62.585 66.667 0.00 0.00 42.30 4.85
131 132 4.269523 GGTGGCTGTGTGGGCAGA 62.270 66.667 0.00 0.00 42.30 4.26
132 133 2.203337 GTGGCTGTGTGGGCAGAA 60.203 61.111 0.00 0.00 42.30 3.02
133 134 1.827789 GTGGCTGTGTGGGCAGAAA 60.828 57.895 0.00 0.00 42.30 2.52
134 135 1.827789 TGGCTGTGTGGGCAGAAAC 60.828 57.895 0.00 0.00 38.70 2.78
135 136 1.529244 GGCTGTGTGGGCAGAAACT 60.529 57.895 0.00 0.00 38.70 2.66
136 137 0.250727 GGCTGTGTGGGCAGAAACTA 60.251 55.000 0.00 0.00 38.70 2.24
137 138 1.160137 GCTGTGTGGGCAGAAACTAG 58.840 55.000 0.00 0.00 38.70 2.57
138 139 1.543429 GCTGTGTGGGCAGAAACTAGT 60.543 52.381 0.00 0.00 38.70 2.57
139 140 2.851195 CTGTGTGGGCAGAAACTAGTT 58.149 47.619 1.12 1.12 38.70 2.24
140 141 2.808543 CTGTGTGGGCAGAAACTAGTTC 59.191 50.000 8.95 2.91 38.70 3.01
141 142 1.798813 GTGTGGGCAGAAACTAGTTCG 59.201 52.381 8.95 2.01 41.52 3.95
142 143 0.796927 GTGGGCAGAAACTAGTTCGC 59.203 55.000 8.95 11.76 41.52 4.70
143 144 0.321298 TGGGCAGAAACTAGTTCGCC 60.321 55.000 24.98 24.98 46.43 5.54
144 145 2.467962 GGCAGAAACTAGTTCGCCC 58.532 57.895 23.55 12.97 43.88 6.13
145 146 0.321298 GGCAGAAACTAGTTCGCCCA 60.321 55.000 23.55 0.00 43.88 5.36
146 147 0.796927 GCAGAAACTAGTTCGCCCAC 59.203 55.000 8.95 0.00 41.52 4.61
147 148 1.876416 GCAGAAACTAGTTCGCCCACA 60.876 52.381 8.95 0.00 41.52 4.17
148 149 1.798813 CAGAAACTAGTTCGCCCACAC 59.201 52.381 8.95 0.00 41.52 3.82
149 150 1.414919 AGAAACTAGTTCGCCCACACA 59.585 47.619 8.95 0.00 41.52 3.72
150 151 1.798813 GAAACTAGTTCGCCCACACAG 59.201 52.381 8.95 0.00 0.00 3.66
151 152 0.602905 AACTAGTTCGCCCACACAGC 60.603 55.000 1.12 0.00 0.00 4.40
201 202 2.514824 GGCGACCTCTCCAATGCC 60.515 66.667 0.00 0.00 35.04 4.40
202 203 2.514824 GCGACCTCTCCAATGCCC 60.515 66.667 0.00 0.00 0.00 5.36
203 204 2.989639 CGACCTCTCCAATGCCCA 59.010 61.111 0.00 0.00 0.00 5.36
204 205 1.450312 CGACCTCTCCAATGCCCAC 60.450 63.158 0.00 0.00 0.00 4.61
205 206 1.685224 GACCTCTCCAATGCCCACA 59.315 57.895 0.00 0.00 0.00 4.17
206 207 0.678048 GACCTCTCCAATGCCCACAC 60.678 60.000 0.00 0.00 0.00 3.82
207 208 1.379916 CCTCTCCAATGCCCACACA 59.620 57.895 0.00 0.00 0.00 3.72
208 209 0.962356 CCTCTCCAATGCCCACACAC 60.962 60.000 0.00 0.00 0.00 3.82
209 210 0.962356 CTCTCCAATGCCCACACACC 60.962 60.000 0.00 0.00 0.00 4.16
210 211 2.282110 TCCAATGCCCACACACCG 60.282 61.111 0.00 0.00 0.00 4.94
211 212 3.372730 CCAATGCCCACACACCGG 61.373 66.667 0.00 0.00 0.00 5.28
212 213 4.054825 CAATGCCCACACACCGGC 62.055 66.667 0.00 0.00 45.92 6.13
217 218 4.579384 CCCACACACCGGCCTTGT 62.579 66.667 0.00 0.08 0.00 3.16
218 219 2.518349 CCACACACCGGCCTTGTT 60.518 61.111 0.00 0.00 0.00 2.83
219 220 2.551912 CCACACACCGGCCTTGTTC 61.552 63.158 0.00 0.00 0.00 3.18
220 221 1.525995 CACACACCGGCCTTGTTCT 60.526 57.895 0.00 0.00 0.00 3.01
221 222 0.250124 CACACACCGGCCTTGTTCTA 60.250 55.000 0.00 0.00 0.00 2.10
222 223 0.250166 ACACACCGGCCTTGTTCTAC 60.250 55.000 0.00 0.00 0.00 2.59
223 224 1.005394 ACACCGGCCTTGTTCTACG 60.005 57.895 0.00 0.00 0.00 3.51
224 225 1.005394 CACCGGCCTTGTTCTACGT 60.005 57.895 0.00 0.00 0.00 3.57
225 226 1.005394 ACCGGCCTTGTTCTACGTG 60.005 57.895 0.00 0.00 0.00 4.49
226 227 1.740296 CCGGCCTTGTTCTACGTGG 60.740 63.158 0.00 0.00 0.00 4.94
227 228 2.388232 CGGCCTTGTTCTACGTGGC 61.388 63.158 0.00 0.00 38.02 5.01
228 229 1.302192 GGCCTTGTTCTACGTGGCA 60.302 57.895 12.26 0.00 39.65 4.92
229 230 0.676782 GGCCTTGTTCTACGTGGCAT 60.677 55.000 12.26 0.00 39.65 4.40
230 231 0.447801 GCCTTGTTCTACGTGGCATG 59.552 55.000 4.87 4.87 38.41 4.06
231 232 0.447801 CCTTGTTCTACGTGGCATGC 59.552 55.000 9.90 9.90 0.00 4.06
232 233 0.095245 CTTGTTCTACGTGGCATGCG 59.905 55.000 12.44 0.54 0.00 4.73
233 234 0.319986 TTGTTCTACGTGGCATGCGA 60.320 50.000 12.44 4.51 0.00 5.10
234 235 0.319986 TGTTCTACGTGGCATGCGAA 60.320 50.000 12.44 5.46 0.00 4.70
235 236 0.793861 GTTCTACGTGGCATGCGAAA 59.206 50.000 12.44 0.00 0.00 3.46
236 237 1.195900 GTTCTACGTGGCATGCGAAAA 59.804 47.619 12.44 0.00 0.00 2.29
237 238 0.793861 TCTACGTGGCATGCGAAAAC 59.206 50.000 12.44 6.50 0.00 2.43
238 239 0.796312 CTACGTGGCATGCGAAAACT 59.204 50.000 12.44 0.00 0.00 2.66
239 240 0.515127 TACGTGGCATGCGAAAACTG 59.485 50.000 12.44 6.66 0.00 3.16
240 241 2.082366 CGTGGCATGCGAAAACTGC 61.082 57.895 12.44 0.00 35.16 4.40
243 244 4.465413 GCATGCGAAAACTGCCTC 57.535 55.556 0.00 0.00 0.00 4.70
244 245 1.512734 GCATGCGAAAACTGCCTCG 60.513 57.895 0.00 0.00 38.11 4.63
245 246 1.135315 CATGCGAAAACTGCCTCGG 59.865 57.895 0.00 0.00 35.60 4.63
246 247 1.302511 ATGCGAAAACTGCCTCGGT 60.303 52.632 0.00 0.00 35.60 4.69
247 248 1.577328 ATGCGAAAACTGCCTCGGTG 61.577 55.000 0.00 0.00 35.60 4.94
248 249 2.251642 GCGAAAACTGCCTCGGTGT 61.252 57.895 0.00 0.00 35.60 4.16
249 250 1.569493 CGAAAACTGCCTCGGTGTG 59.431 57.895 0.00 0.00 0.00 3.82
250 251 1.157870 CGAAAACTGCCTCGGTGTGT 61.158 55.000 0.00 0.00 0.00 3.72
251 252 0.586802 GAAAACTGCCTCGGTGTGTC 59.413 55.000 0.00 0.00 0.00 3.67
252 253 0.107410 AAAACTGCCTCGGTGTGTCA 60.107 50.000 0.00 0.00 0.00 3.58
253 254 0.107410 AAACTGCCTCGGTGTGTCAA 60.107 50.000 0.00 0.00 0.00 3.18
254 255 0.532862 AACTGCCTCGGTGTGTCAAG 60.533 55.000 0.00 0.00 0.00 3.02
255 256 1.367471 CTGCCTCGGTGTGTCAAGA 59.633 57.895 0.00 0.00 0.00 3.02
256 257 0.036952 CTGCCTCGGTGTGTCAAGAT 60.037 55.000 0.00 0.00 0.00 2.40
257 258 0.396435 TGCCTCGGTGTGTCAAGATT 59.604 50.000 0.00 0.00 0.00 2.40
258 259 1.079503 GCCTCGGTGTGTCAAGATTC 58.920 55.000 0.00 0.00 0.00 2.52
259 260 1.350193 CCTCGGTGTGTCAAGATTCG 58.650 55.000 0.00 0.00 0.00 3.34
260 261 1.336887 CCTCGGTGTGTCAAGATTCGT 60.337 52.381 0.00 0.00 0.00 3.85
261 262 1.721389 CTCGGTGTGTCAAGATTCGTG 59.279 52.381 0.00 0.00 0.00 4.35
262 263 0.163788 CGGTGTGTCAAGATTCGTGC 59.836 55.000 0.00 0.00 0.00 5.34
263 264 1.225855 GGTGTGTCAAGATTCGTGCA 58.774 50.000 0.00 0.00 0.00 4.57
264 265 1.601903 GGTGTGTCAAGATTCGTGCAA 59.398 47.619 0.00 0.00 0.00 4.08
265 266 2.032799 GGTGTGTCAAGATTCGTGCAAA 59.967 45.455 0.00 0.00 0.00 3.68
266 267 3.035942 GTGTGTCAAGATTCGTGCAAAC 58.964 45.455 0.00 0.00 0.00 2.93
267 268 2.942376 TGTGTCAAGATTCGTGCAAACT 59.058 40.909 0.00 0.00 0.00 2.66
268 269 3.376859 TGTGTCAAGATTCGTGCAAACTT 59.623 39.130 0.00 0.00 0.00 2.66
269 270 4.572795 TGTGTCAAGATTCGTGCAAACTTA 59.427 37.500 0.00 0.00 0.00 2.24
270 271 5.065346 TGTGTCAAGATTCGTGCAAACTTAA 59.935 36.000 0.00 0.00 0.00 1.85
271 272 6.142817 GTGTCAAGATTCGTGCAAACTTAAT 58.857 36.000 0.00 0.00 0.00 1.40
272 273 6.636850 GTGTCAAGATTCGTGCAAACTTAATT 59.363 34.615 0.00 0.00 0.00 1.40
273 274 6.636447 TGTCAAGATTCGTGCAAACTTAATTG 59.364 34.615 0.00 0.00 0.00 2.32
274 275 6.088085 GTCAAGATTCGTGCAAACTTAATTGG 59.912 38.462 0.00 0.00 0.00 3.16
275 276 5.957842 AGATTCGTGCAAACTTAATTGGA 57.042 34.783 0.00 0.00 0.00 3.53
276 277 5.699839 AGATTCGTGCAAACTTAATTGGAC 58.300 37.500 3.98 3.98 45.03 4.02
279 280 3.636282 GTGCAAACTTAATTGGACGGT 57.364 42.857 0.00 0.00 40.89 4.83
280 281 3.305110 GTGCAAACTTAATTGGACGGTG 58.695 45.455 0.00 0.00 40.89 4.94
281 282 3.003897 GTGCAAACTTAATTGGACGGTGA 59.996 43.478 0.00 0.00 40.89 4.02
282 283 3.823873 TGCAAACTTAATTGGACGGTGAT 59.176 39.130 0.00 0.00 0.00 3.06
283 284 4.083003 TGCAAACTTAATTGGACGGTGATC 60.083 41.667 0.00 0.00 0.00 2.92
284 285 4.674362 GCAAACTTAATTGGACGGTGATCC 60.674 45.833 0.00 0.00 39.45 3.36
289 290 2.186644 TGGACGGTGATCCATGCG 59.813 61.111 0.00 0.00 44.14 4.73
290 291 2.186903 GGACGGTGATCCATGCGT 59.813 61.111 0.00 0.00 38.77 5.24
291 292 2.173669 GGACGGTGATCCATGCGTG 61.174 63.158 0.00 0.00 38.77 5.34
293 294 2.896854 CGGTGATCCATGCGTGGG 60.897 66.667 24.78 6.59 46.06 4.61
294 295 3.211963 GGTGATCCATGCGTGGGC 61.212 66.667 24.78 16.92 46.06 5.36
295 296 3.576356 GTGATCCATGCGTGGGCG 61.576 66.667 24.78 0.00 46.06 6.13
296 297 3.780173 TGATCCATGCGTGGGCGA 61.780 61.111 24.78 6.18 46.06 5.54
297 298 2.969238 GATCCATGCGTGGGCGAG 60.969 66.667 24.78 0.00 46.06 5.03
298 299 3.740128 GATCCATGCGTGGGCGAGT 62.740 63.158 24.78 6.30 46.06 4.18
299 300 3.329542 ATCCATGCGTGGGCGAGTT 62.330 57.895 24.78 0.81 46.06 3.01
300 301 3.803082 CCATGCGTGGGCGAGTTG 61.803 66.667 17.90 0.00 44.10 3.16
301 302 4.465512 CATGCGTGGGCGAGTTGC 62.466 66.667 0.00 0.00 44.10 4.17
332 333 3.336566 GCGTGGGCGTTAGTGTTT 58.663 55.556 0.00 0.00 40.81 2.83
333 334 1.650363 GCGTGGGCGTTAGTGTTTT 59.350 52.632 0.00 0.00 40.81 2.43
334 335 0.385098 GCGTGGGCGTTAGTGTTTTC 60.385 55.000 0.00 0.00 40.81 2.29
335 336 0.111001 CGTGGGCGTTAGTGTTTTCG 60.111 55.000 0.00 0.00 0.00 3.46
370 371 6.435164 AGATAAAGGTAAGTCGGTAACCCTA 58.565 40.000 0.00 0.00 33.53 3.53
373 374 4.808414 AGGTAAGTCGGTAACCCTAAAC 57.192 45.455 0.00 0.00 33.53 2.01
380 381 9.166173 GTAAGTCGGTAACCCTAAACATATTTT 57.834 33.333 0.00 0.00 0.00 1.82
385 386 7.553760 TCGGTAACCCTAAACATATTTTTCTCC 59.446 37.037 0.00 0.00 0.00 3.71
407 408 4.495349 CCGTGATGCAGATGCTTAAAAGAG 60.495 45.833 6.35 0.00 42.66 2.85
412 413 7.226325 GTGATGCAGATGCTTAAAAGAGTAGAT 59.774 37.037 6.35 0.00 42.66 1.98
435 436 6.849588 TGAGAATCACCGACATGATATTTG 57.150 37.500 0.00 0.00 42.56 2.32
436 437 5.237127 TGAGAATCACCGACATGATATTTGC 59.763 40.000 0.00 0.00 42.56 3.68
438 439 5.237996 AGAATCACCGACATGATATTTGCAG 59.762 40.000 0.00 0.00 38.40 4.41
439 440 3.205338 TCACCGACATGATATTTGCAGG 58.795 45.455 0.00 0.00 0.00 4.85
440 441 3.118445 TCACCGACATGATATTTGCAGGA 60.118 43.478 0.00 0.00 0.00 3.86
441 442 3.002656 CACCGACATGATATTTGCAGGAC 59.997 47.826 0.00 0.00 0.00 3.85
442 443 2.549754 CCGACATGATATTTGCAGGACC 59.450 50.000 0.00 0.00 0.00 4.46
443 444 3.205338 CGACATGATATTTGCAGGACCA 58.795 45.455 0.00 0.00 0.00 4.02
444 445 3.249320 CGACATGATATTTGCAGGACCAG 59.751 47.826 0.00 0.00 0.00 4.00
446 447 3.220110 CATGATATTTGCAGGACCAGCT 58.780 45.455 10.54 0.00 0.00 4.24
447 448 2.646930 TGATATTTGCAGGACCAGCTG 58.353 47.619 6.78 6.78 0.00 4.24
448 449 1.952296 GATATTTGCAGGACCAGCTGG 59.048 52.381 31.60 31.60 42.17 4.85
471 472 4.813697 GTCATCCTTCACCTATCTTGAAGC 59.186 45.833 6.58 0.00 45.88 3.86
497 498 0.537188 GAGCCCTTTGATCGGAGTCA 59.463 55.000 0.00 0.00 0.00 3.41
512 513 2.040412 GGAGTCAGACAATGGGAGGTTT 59.960 50.000 2.66 0.00 0.00 3.27
513 514 3.077359 GAGTCAGACAATGGGAGGTTTG 58.923 50.000 2.66 0.00 0.00 2.93
514 515 2.443255 AGTCAGACAATGGGAGGTTTGT 59.557 45.455 2.66 0.00 38.71 2.83
515 516 3.117512 AGTCAGACAATGGGAGGTTTGTT 60.118 43.478 2.66 0.00 36.25 2.83
535 536 3.988379 TTCTGTTGTTGAATGCTGGAC 57.012 42.857 0.00 0.00 0.00 4.02
542 543 2.429971 TGTTGAATGCTGGACTGCAAAA 59.570 40.909 7.93 1.61 46.61 2.44
543 544 3.118847 TGTTGAATGCTGGACTGCAAAAA 60.119 39.130 7.93 1.29 46.61 1.94
544 545 4.060205 GTTGAATGCTGGACTGCAAAAAT 58.940 39.130 7.93 0.00 46.61 1.82
561 562 6.593072 GCAAAAATGTTGTTGCTTTCTATCC 58.407 36.000 12.28 0.00 45.34 2.59
582 583 2.727777 GTTGCTTTTCGTGAAGGGTTC 58.272 47.619 3.46 0.00 0.00 3.62
591 592 2.035961 TCGTGAAGGGTTCAGAGTTCAG 59.964 50.000 0.00 0.00 41.01 3.02
597 598 3.041946 AGGGTTCAGAGTTCAGACAAGT 58.958 45.455 0.00 0.00 0.00 3.16
601 602 4.202223 GGTTCAGAGTTCAGACAAGTACCA 60.202 45.833 0.00 0.00 0.00 3.25
606 607 5.178252 CAGAGTTCAGACAAGTACCATGTTG 59.822 44.000 3.66 0.00 0.00 3.33
649 651 6.259550 ACAAGGTTGCACTCTAATTTCATC 57.740 37.500 0.00 0.00 0.00 2.92
661 663 9.565213 CACTCTAATTTCATCAGTTTTTGGATC 57.435 33.333 0.00 0.00 0.00 3.36
670 672 7.102993 TCATCAGTTTTTGGATCGAGTGAATA 58.897 34.615 0.00 0.00 0.00 1.75
733 735 6.049149 TCTTGTACTCTCACTTTGAGTTTGG 58.951 40.000 3.19 0.00 44.58 3.28
736 738 2.158608 ACTCTCACTTTGAGTTTGGGGG 60.159 50.000 3.19 0.00 44.58 5.40
772 774 2.664402 AAGTGCCAGGACAAGTTGAT 57.336 45.000 10.54 0.00 0.00 2.57
773 775 1.901591 AGTGCCAGGACAAGTTGATG 58.098 50.000 10.54 5.29 0.00 3.07
774 776 1.143684 AGTGCCAGGACAAGTTGATGT 59.856 47.619 10.54 0.00 35.90 3.06
775 777 1.956477 GTGCCAGGACAAGTTGATGTT 59.044 47.619 10.54 0.00 32.57 2.71
776 778 2.362077 GTGCCAGGACAAGTTGATGTTT 59.638 45.455 10.54 0.00 32.57 2.83
808 1187 8.463930 TTTTGTAGAATCTGGACAAGTTGAAT 57.536 30.769 10.54 0.00 34.72 2.57
809 1188 9.567776 TTTTGTAGAATCTGGACAAGTTGAATA 57.432 29.630 10.54 0.00 34.72 1.75
810 1189 9.567776 TTTGTAGAATCTGGACAAGTTGAATAA 57.432 29.630 10.54 0.00 34.72 1.40
811 1190 8.777865 TGTAGAATCTGGACAAGTTGAATAAG 57.222 34.615 10.54 1.90 0.00 1.73
812 1191 8.375506 TGTAGAATCTGGACAAGTTGAATAAGT 58.624 33.333 10.54 0.00 0.00 2.24
813 1192 9.871238 GTAGAATCTGGACAAGTTGAATAAGTA 57.129 33.333 10.54 0.00 0.00 2.24
815 1194 8.816894 AGAATCTGGACAAGTTGAATAAGTAGA 58.183 33.333 10.54 3.95 0.00 2.59
816 1195 9.606631 GAATCTGGACAAGTTGAATAAGTAGAT 57.393 33.333 10.54 5.93 0.00 1.98
817 1196 8.954950 ATCTGGACAAGTTGAATAAGTAGATG 57.045 34.615 10.54 0.00 0.00 2.90
818 1197 6.818644 TCTGGACAAGTTGAATAAGTAGATGC 59.181 38.462 10.54 0.00 0.00 3.91
833 1212 1.304052 ATGCTGGGCGCTAACCAAA 60.304 52.632 7.64 0.00 37.59 3.28
836 1215 2.670251 TGGGCGCTAACCAAACGG 60.670 61.111 7.64 0.00 34.44 4.44
846 1225 1.789576 AACCAAACGGCCCCTGAGAT 61.790 55.000 0.00 0.00 0.00 2.75
895 1274 1.378646 GCTTCAAGGCCCACTACCC 60.379 63.158 0.00 0.00 0.00 3.69
896 1275 1.853250 GCTTCAAGGCCCACTACCCT 61.853 60.000 0.00 0.00 0.00 4.34
897 1276 0.253327 CTTCAAGGCCCACTACCCTC 59.747 60.000 0.00 0.00 0.00 4.30
899 1278 2.687566 AAGGCCCACTACCCTCCG 60.688 66.667 0.00 0.00 0.00 4.63
900 1279 4.798682 AGGCCCACTACCCTCCGG 62.799 72.222 0.00 0.00 0.00 5.14
901 1280 4.791069 GGCCCACTACCCTCCGGA 62.791 72.222 2.93 2.93 0.00 5.14
905 1284 0.481567 CCCACTACCCTCCGGATAGA 59.518 60.000 15.87 0.00 0.00 1.98
906 1285 1.133262 CCCACTACCCTCCGGATAGAA 60.133 57.143 15.87 0.00 0.00 2.10
907 1286 2.674420 CCACTACCCTCCGGATAGAAA 58.326 52.381 15.87 0.00 0.00 2.52
908 1287 3.036091 CCACTACCCTCCGGATAGAAAA 58.964 50.000 15.87 0.00 0.00 2.29
909 1288 3.453353 CCACTACCCTCCGGATAGAAAAA 59.547 47.826 15.87 0.00 0.00 1.94
910 1289 4.443034 CCACTACCCTCCGGATAGAAAAAG 60.443 50.000 15.87 5.83 0.00 2.27
911 1290 3.710165 ACTACCCTCCGGATAGAAAAAGG 59.290 47.826 15.87 6.38 0.00 3.11
912 1291 1.212195 ACCCTCCGGATAGAAAAAGGC 59.788 52.381 3.57 0.00 0.00 4.35
913 1292 1.477014 CCCTCCGGATAGAAAAAGGCC 60.477 57.143 3.57 0.00 0.00 5.19
914 1293 1.477014 CCTCCGGATAGAAAAAGGCCC 60.477 57.143 3.57 0.00 0.00 5.80
915 1294 1.211949 CTCCGGATAGAAAAAGGCCCA 59.788 52.381 3.57 0.00 0.00 5.36
916 1295 1.064979 TCCGGATAGAAAAAGGCCCAC 60.065 52.381 0.00 0.00 0.00 4.61
917 1296 1.064685 CCGGATAGAAAAAGGCCCACT 60.065 52.381 0.00 0.00 0.00 4.00
918 1297 2.171870 CCGGATAGAAAAAGGCCCACTA 59.828 50.000 0.00 0.00 0.00 2.74
919 1298 3.203716 CGGATAGAAAAAGGCCCACTAC 58.796 50.000 0.00 0.00 0.00 2.73
920 1299 3.203716 GGATAGAAAAAGGCCCACTACG 58.796 50.000 0.00 0.00 0.00 3.51
921 1300 2.103537 TAGAAAAAGGCCCACTACGC 57.896 50.000 0.00 0.00 0.00 4.42
922 1301 0.400594 AGAAAAAGGCCCACTACGCT 59.599 50.000 0.00 0.00 0.00 5.07
923 1302 0.803117 GAAAAAGGCCCACTACGCTC 59.197 55.000 0.00 0.00 0.00 5.03
924 1303 0.109723 AAAAAGGCCCACTACGCTCA 59.890 50.000 0.00 0.00 0.00 4.26
925 1304 0.605589 AAAAGGCCCACTACGCTCAC 60.606 55.000 0.00 0.00 0.00 3.51
926 1305 1.764571 AAAGGCCCACTACGCTCACA 61.765 55.000 0.00 0.00 0.00 3.58
927 1306 1.553690 AAGGCCCACTACGCTCACAT 61.554 55.000 0.00 0.00 0.00 3.21
928 1307 0.686441 AGGCCCACTACGCTCACATA 60.686 55.000 0.00 0.00 0.00 2.29
929 1308 0.249489 GGCCCACTACGCTCACATAG 60.249 60.000 0.00 0.00 0.00 2.23
930 1309 0.744874 GCCCACTACGCTCACATAGA 59.255 55.000 0.00 0.00 0.00 1.98
931 1310 1.136305 GCCCACTACGCTCACATAGAA 59.864 52.381 0.00 0.00 0.00 2.10
932 1311 2.418197 GCCCACTACGCTCACATAGAAA 60.418 50.000 0.00 0.00 0.00 2.52
933 1312 3.857052 CCCACTACGCTCACATAGAAAA 58.143 45.455 0.00 0.00 0.00 2.29
944 1323 5.134202 TCACATAGAAAAAGTCTCGCTCA 57.866 39.130 0.00 0.00 37.84 4.26
1029 1416 4.363990 CGGTGCTGCGTCCTCACT 62.364 66.667 10.89 0.00 0.00 3.41
1035 1422 1.291588 CTGCGTCCTCACTCAGCTT 59.708 57.895 0.00 0.00 28.76 3.74
1467 1860 1.374252 CTACCTGCGCTTGTTCGGT 60.374 57.895 9.73 8.03 0.00 4.69
1474 1867 1.866925 CGCTTGTTCGGTTCCTTCC 59.133 57.895 0.00 0.00 0.00 3.46
1570 1963 4.680237 CGTTCCTGCGGGAGTGCA 62.680 66.667 15.42 0.00 43.29 4.57
1585 1978 1.229177 TGCAGGCTAGGTGACTCCA 60.229 57.895 0.00 0.00 43.67 3.86
1724 2117 0.998226 CACGCATTGAACGCTGTTGG 60.998 55.000 0.00 0.00 0.00 3.77
1771 2176 2.755103 GCCAAAGTGGATTACCTGAAGG 59.245 50.000 0.00 0.00 40.96 3.46
1801 2206 0.901124 GTGGTCAGATGCTGAGGTCT 59.099 55.000 0.00 0.00 41.46 3.85
1827 2232 4.647424 TGTTGTGTCCAAGTTTCCATTC 57.353 40.909 0.00 0.00 0.00 2.67
1981 2386 6.440328 ACCCCGGTACTATGTTCTAAAGTTTA 59.560 38.462 0.00 0.00 0.00 2.01
2168 6719 2.183478 TTCACATGAGCCATGAACGT 57.817 45.000 18.41 0.00 43.81 3.99
2262 6814 4.152223 TGCTAACGTGTGATGAAACTGATG 59.848 41.667 0.00 0.00 0.00 3.07
2306 6859 9.486497 GATATGTAGTGTCATCATTCAGTTGAT 57.514 33.333 0.00 0.00 36.79 2.57
2461 9008 3.141398 GGTGCATTGAGAGTTTGAGACA 58.859 45.455 0.00 0.00 0.00 3.41
2468 9015 2.373169 TGAGAGTTTGAGACAATGGGCT 59.627 45.455 0.00 0.00 0.00 5.19
2498 9046 1.303643 AGCCAGCAACAGCCTTACC 60.304 57.895 0.00 0.00 0.00 2.85
2503 9051 2.102252 CCAGCAACAGCCTTACCAAAAA 59.898 45.455 0.00 0.00 0.00 1.94
2504 9052 3.244181 CCAGCAACAGCCTTACCAAAAAT 60.244 43.478 0.00 0.00 0.00 1.82
2505 9053 4.021544 CCAGCAACAGCCTTACCAAAAATA 60.022 41.667 0.00 0.00 0.00 1.40
2506 9054 5.337491 CCAGCAACAGCCTTACCAAAAATAT 60.337 40.000 0.00 0.00 0.00 1.28
2507 9055 6.165577 CAGCAACAGCCTTACCAAAAATATT 58.834 36.000 0.00 0.00 0.00 1.28
2508 9056 6.650390 CAGCAACAGCCTTACCAAAAATATTT 59.350 34.615 0.00 0.00 0.00 1.40
2509 9057 6.650390 AGCAACAGCCTTACCAAAAATATTTG 59.350 34.615 0.39 0.00 44.50 2.32
2524 9072 7.494922 AAAATATTTGGGTATTGACTGGCTT 57.505 32.000 0.39 0.00 0.00 4.35
2528 9076 4.374689 TTGGGTATTGACTGGCTTGTTA 57.625 40.909 0.00 0.00 0.00 2.41
2548 9096 0.600057 GCCTTTGGTTGGAAGCAGAG 59.400 55.000 2.87 2.87 38.08 3.35
2594 9142 2.404215 GTTGCTCGTTCAGTTCTAGCA 58.596 47.619 0.00 0.00 41.19 3.49
2606 9154 4.067896 CAGTTCTAGCATCAGGTTGTTGT 58.932 43.478 0.00 0.00 0.00 3.32
2607 9155 4.153117 CAGTTCTAGCATCAGGTTGTTGTC 59.847 45.833 0.00 0.00 0.00 3.18
2609 9157 2.299013 TCTAGCATCAGGTTGTTGTCGT 59.701 45.455 0.00 0.00 0.00 4.34
2631 9179 0.595588 CCACGTGGCAAAATAGTGCA 59.404 50.000 24.02 0.00 46.81 4.57
2692 9240 3.451894 GGCATCCAAACAGCCCCG 61.452 66.667 0.00 0.00 42.58 5.73
2693 9241 2.361104 GCATCCAAACAGCCCCGA 60.361 61.111 0.00 0.00 0.00 5.14
2721 9269 4.263506 CCAAGGTAAGGTCTCCTTCATTGT 60.264 45.833 4.21 0.00 43.57 2.71
2722 9270 5.316987 CAAGGTAAGGTCTCCTTCATTGTT 58.683 41.667 4.21 0.00 43.57 2.83
2754 9309 9.739276 TGAACTCCTAATGTTCTATTCATGTTT 57.261 29.630 7.89 0.00 42.86 2.83
2820 9375 3.737850 AGTCTTTTCTGAGAGCAACTGG 58.262 45.455 0.00 0.00 0.00 4.00
2823 9378 3.389329 TCTTTTCTGAGAGCAACTGGAGT 59.611 43.478 0.00 0.00 0.00 3.85
2825 9380 0.972134 TCTGAGAGCAACTGGAGTGG 59.028 55.000 0.00 0.00 0.00 4.00
2851 9406 2.027192 TGCCTCCTGGTGTTAGTGATTC 60.027 50.000 0.00 0.00 35.27 2.52
2887 9442 8.934697 AGTATCAATTAACCTGTCTATGGCTTA 58.065 33.333 0.00 0.00 0.00 3.09
2906 9461 9.643693 ATGGCTTAATCTTATTTTCAGTTGTTG 57.356 29.630 0.00 0.00 0.00 3.33
2907 9462 8.637986 TGGCTTAATCTTATTTTCAGTTGTTGT 58.362 29.630 0.00 0.00 0.00 3.32
2908 9463 9.476202 GGCTTAATCTTATTTTCAGTTGTTGTT 57.524 29.630 0.00 0.00 0.00 2.83
2970 9525 2.606725 CAGCGATCCACTTTTGCTCTAG 59.393 50.000 0.00 0.00 31.28 2.43
2979 9534 6.164176 TCCACTTTTGCTCTAGTTAGCTAAC 58.836 40.000 26.04 26.04 43.19 2.34
3034 9589 6.018343 GCTATTGAAAGTCTATGGAAGTGAGC 60.018 42.308 0.00 0.00 0.00 4.26
3054 9609 8.202745 GTGAGCTCACTTAAGTTATGCTAAAT 57.797 34.615 34.54 5.53 43.25 1.40
3099 9894 2.588620 TGTAACGGTTTGGAGCCATTT 58.411 42.857 0.00 0.00 0.00 2.32
3118 9913 6.634039 GCCATTTGTCCTACTGGAAATACCTA 60.634 42.308 0.00 0.00 45.18 3.08
3146 9941 1.416772 GTAGGATAACTGGGCAGGACC 59.583 57.143 0.00 0.00 37.93 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.818773 ACTAGGTAAACACACATGGCAAC 59.181 43.478 0.00 0.00 0.00 4.17
1 2 4.093472 ACTAGGTAAACACACATGGCAA 57.907 40.909 0.00 0.00 0.00 4.52
2 3 3.780804 ACTAGGTAAACACACATGGCA 57.219 42.857 0.00 0.00 0.00 4.92
3 4 3.365969 GCAACTAGGTAAACACACATGGC 60.366 47.826 0.00 0.00 0.00 4.40
6 7 4.072131 CTGGCAACTAGGTAAACACACAT 58.928 43.478 0.00 0.00 37.61 3.21
7 8 3.472652 CTGGCAACTAGGTAAACACACA 58.527 45.455 0.00 0.00 37.61 3.72
9 10 2.440253 ACCTGGCAACTAGGTAAACACA 59.560 45.455 0.14 0.00 43.44 3.72
10 11 3.136009 ACCTGGCAACTAGGTAAACAC 57.864 47.619 0.14 0.00 43.44 3.32
11 12 3.647113 TGTACCTGGCAACTAGGTAAACA 59.353 43.478 10.96 6.54 45.57 2.83
12 13 3.999001 GTGTACCTGGCAACTAGGTAAAC 59.001 47.826 12.92 12.92 45.57 2.01
13 14 3.306225 CGTGTACCTGGCAACTAGGTAAA 60.306 47.826 10.96 3.87 45.57 2.01
14 15 2.231964 CGTGTACCTGGCAACTAGGTAA 59.768 50.000 10.96 1.02 45.57 2.85
15 16 1.820519 CGTGTACCTGGCAACTAGGTA 59.179 52.381 5.81 5.81 43.44 3.08
16 17 0.606604 CGTGTACCTGGCAACTAGGT 59.393 55.000 7.81 7.81 45.87 3.08
17 18 0.739813 GCGTGTACCTGGCAACTAGG 60.740 60.000 0.00 0.00 39.77 3.02
18 19 0.037697 TGCGTGTACCTGGCAACTAG 60.038 55.000 0.00 0.00 33.01 2.57
19 20 0.393448 TTGCGTGTACCTGGCAACTA 59.607 50.000 10.21 0.00 41.34 2.24
20 21 1.147376 TTGCGTGTACCTGGCAACT 59.853 52.632 10.21 0.00 41.34 3.16
21 22 3.739167 TTGCGTGTACCTGGCAAC 58.261 55.556 10.21 0.00 41.34 4.17
22 23 1.147376 AGTTGCGTGTACCTGGCAA 59.853 52.632 10.21 10.21 43.73 4.52
23 24 1.596752 CAGTTGCGTGTACCTGGCA 60.597 57.895 0.00 0.00 34.35 4.92
24 25 2.966309 GCAGTTGCGTGTACCTGGC 61.966 63.158 0.00 0.00 0.00 4.85
25 26 1.568612 CTGCAGTTGCGTGTACCTGG 61.569 60.000 5.25 0.00 45.83 4.45
26 27 0.880278 ACTGCAGTTGCGTGTACCTG 60.880 55.000 15.25 0.00 45.83 4.00
27 28 0.179056 AACTGCAGTTGCGTGTACCT 60.179 50.000 30.66 2.58 45.83 3.08
28 29 2.317230 AACTGCAGTTGCGTGTACC 58.683 52.632 30.66 0.00 45.83 3.34
37 38 1.242076 GCTGGATGACAACTGCAGTT 58.758 50.000 26.36 26.36 39.12 3.16
38 39 0.109153 TGCTGGATGACAACTGCAGT 59.891 50.000 15.25 15.25 36.77 4.40
39 40 1.068748 GTTGCTGGATGACAACTGCAG 60.069 52.381 13.48 13.48 42.27 4.41
40 41 0.953727 GTTGCTGGATGACAACTGCA 59.046 50.000 9.84 9.84 42.27 4.41
41 42 0.110056 CGTTGCTGGATGACAACTGC 60.110 55.000 4.57 5.72 43.14 4.40
42 43 1.229428 ACGTTGCTGGATGACAACTG 58.771 50.000 4.57 1.56 43.14 3.16
43 44 2.413837 GTACGTTGCTGGATGACAACT 58.586 47.619 0.00 0.00 43.14 3.16
44 45 1.126113 CGTACGTTGCTGGATGACAAC 59.874 52.381 7.22 0.00 42.15 3.32
45 46 1.000052 TCGTACGTTGCTGGATGACAA 60.000 47.619 16.05 0.00 0.00 3.18
46 47 0.599060 TCGTACGTTGCTGGATGACA 59.401 50.000 16.05 0.00 0.00 3.58
47 48 0.989890 GTCGTACGTTGCTGGATGAC 59.010 55.000 16.05 0.00 0.00 3.06
48 49 0.885879 AGTCGTACGTTGCTGGATGA 59.114 50.000 16.05 0.00 0.00 2.92
49 50 0.992072 CAGTCGTACGTTGCTGGATG 59.008 55.000 16.05 0.46 0.00 3.51
50 51 0.601558 ACAGTCGTACGTTGCTGGAT 59.398 50.000 26.84 13.85 33.62 3.41
51 52 0.039798 GACAGTCGTACGTTGCTGGA 60.040 55.000 26.84 4.75 33.62 3.86
52 53 1.334992 CGACAGTCGTACGTTGCTGG 61.335 60.000 26.84 14.96 34.72 4.85
53 54 2.051638 CGACAGTCGTACGTTGCTG 58.948 57.895 24.09 24.09 34.72 4.41
54 55 4.528002 CGACAGTCGTACGTTGCT 57.472 55.556 16.05 9.32 34.72 3.91
71 72 1.332904 CGAACTGCTTTTCGTCCACAC 60.333 52.381 10.91 0.00 42.78 3.82
72 73 0.934496 CGAACTGCTTTTCGTCCACA 59.066 50.000 10.91 0.00 42.78 4.17
73 74 3.629404 GGCGAACTGCTTTTCGTCCAC 62.629 57.143 17.71 5.15 45.74 4.02
74 75 1.503818 GGCGAACTGCTTTTCGTCCA 61.504 55.000 17.71 0.00 45.74 4.02
75 76 1.206831 GGCGAACTGCTTTTCGTCC 59.793 57.895 17.71 15.39 45.74 4.79
79 80 0.598065 ATGTGGGCGAACTGCTTTTC 59.402 50.000 0.00 0.00 45.43 2.29
80 81 0.314935 CATGTGGGCGAACTGCTTTT 59.685 50.000 0.00 0.00 45.43 2.27
81 82 1.959085 CATGTGGGCGAACTGCTTT 59.041 52.632 0.00 0.00 45.43 3.51
82 83 2.629656 GCATGTGGGCGAACTGCTT 61.630 57.895 0.00 0.00 45.43 3.91
83 84 3.058160 GCATGTGGGCGAACTGCT 61.058 61.111 0.00 0.00 45.43 4.24
94 95 2.167219 CCTAGTCCACGCGCATGTG 61.167 63.158 5.73 8.48 39.60 3.21
95 96 2.184322 CCTAGTCCACGCGCATGT 59.816 61.111 5.73 0.00 0.00 3.21
96 97 2.167219 CACCTAGTCCACGCGCATG 61.167 63.158 5.73 0.58 0.00 4.06
97 98 2.184322 CACCTAGTCCACGCGCAT 59.816 61.111 5.73 0.00 0.00 4.73
98 99 4.063967 CCACCTAGTCCACGCGCA 62.064 66.667 5.73 0.00 0.00 6.09
99 100 4.065281 ACCACCTAGTCCACGCGC 62.065 66.667 5.73 0.00 0.00 6.86
100 101 2.126071 CACCACCTAGTCCACGCG 60.126 66.667 3.53 3.53 0.00 6.01
101 102 2.264794 CCACCACCTAGTCCACGC 59.735 66.667 0.00 0.00 0.00 5.34
102 103 2.264794 GCCACCACCTAGTCCACG 59.735 66.667 0.00 0.00 0.00 4.94
103 104 1.296715 CAGCCACCACCTAGTCCAC 59.703 63.158 0.00 0.00 0.00 4.02
104 105 1.152118 ACAGCCACCACCTAGTCCA 60.152 57.895 0.00 0.00 0.00 4.02
105 106 1.296715 CACAGCCACCACCTAGTCC 59.703 63.158 0.00 0.00 0.00 3.85
106 107 0.320771 CACACAGCCACCACCTAGTC 60.321 60.000 0.00 0.00 0.00 2.59
107 108 1.754745 CACACAGCCACCACCTAGT 59.245 57.895 0.00 0.00 0.00 2.57
108 109 1.003355 CCACACAGCCACCACCTAG 60.003 63.158 0.00 0.00 0.00 3.02
109 110 2.525124 CCCACACAGCCACCACCTA 61.525 63.158 0.00 0.00 0.00 3.08
110 111 3.889692 CCCACACAGCCACCACCT 61.890 66.667 0.00 0.00 0.00 4.00
112 113 4.892965 TGCCCACACAGCCACCAC 62.893 66.667 0.00 0.00 0.00 4.16
113 114 4.584518 CTGCCCACACAGCCACCA 62.585 66.667 0.00 0.00 0.00 4.17
114 115 3.790416 TTCTGCCCACACAGCCACC 62.790 63.158 0.00 0.00 37.59 4.61
115 116 1.827789 TTTCTGCCCACACAGCCAC 60.828 57.895 0.00 0.00 37.59 5.01
116 117 1.827789 GTTTCTGCCCACACAGCCA 60.828 57.895 0.00 0.00 37.59 4.75
117 118 0.250727 TAGTTTCTGCCCACACAGCC 60.251 55.000 0.00 0.00 37.59 4.85
118 119 1.160137 CTAGTTTCTGCCCACACAGC 58.840 55.000 0.00 0.00 37.59 4.40
119 120 2.550830 ACTAGTTTCTGCCCACACAG 57.449 50.000 0.00 0.00 39.12 3.66
120 121 2.805295 CGAACTAGTTTCTGCCCACACA 60.805 50.000 10.02 0.00 31.20 3.72
121 122 1.798813 CGAACTAGTTTCTGCCCACAC 59.201 52.381 10.02 0.00 31.20 3.82
122 123 1.876416 GCGAACTAGTTTCTGCCCACA 60.876 52.381 10.02 0.00 31.51 4.17
123 124 0.796927 GCGAACTAGTTTCTGCCCAC 59.203 55.000 10.02 0.00 31.51 4.61
124 125 0.321298 GGCGAACTAGTTTCTGCCCA 60.321 55.000 25.43 0.00 42.93 5.36
125 126 2.467962 GGCGAACTAGTTTCTGCCC 58.532 57.895 25.43 12.84 42.93 5.36
126 127 0.321298 TGGGCGAACTAGTTTCTGCC 60.321 55.000 26.78 26.78 45.55 4.85
127 128 0.796927 GTGGGCGAACTAGTTTCTGC 59.203 55.000 10.02 13.68 34.77 4.26
128 129 1.798813 GTGTGGGCGAACTAGTTTCTG 59.201 52.381 10.02 4.45 31.20 3.02
129 130 1.414919 TGTGTGGGCGAACTAGTTTCT 59.585 47.619 10.02 0.00 31.20 2.52
130 131 1.798813 CTGTGTGGGCGAACTAGTTTC 59.201 52.381 10.02 5.00 0.00 2.78
131 132 1.878953 CTGTGTGGGCGAACTAGTTT 58.121 50.000 10.02 0.00 0.00 2.66
132 133 0.602905 GCTGTGTGGGCGAACTAGTT 60.603 55.000 8.13 8.13 0.00 2.24
133 134 1.004918 GCTGTGTGGGCGAACTAGT 60.005 57.895 0.00 0.00 0.00 2.57
134 135 3.876300 GCTGTGTGGGCGAACTAG 58.124 61.111 0.00 0.00 0.00 2.57
178 179 4.436998 GGAGAGGTCGCCCACACG 62.437 72.222 0.00 0.00 0.00 4.49
179 180 2.185310 ATTGGAGAGGTCGCCCACAC 62.185 60.000 0.00 0.00 34.71 3.82
180 181 1.918293 ATTGGAGAGGTCGCCCACA 60.918 57.895 0.00 0.00 34.71 4.17
181 182 1.450312 CATTGGAGAGGTCGCCCAC 60.450 63.158 0.00 0.00 34.71 4.61
182 183 2.989639 CATTGGAGAGGTCGCCCA 59.010 61.111 0.00 0.00 34.71 5.36
183 184 2.514824 GCATTGGAGAGGTCGCCC 60.515 66.667 0.00 0.00 34.71 6.13
184 185 2.514824 GGCATTGGAGAGGTCGCC 60.515 66.667 0.00 0.00 36.28 5.54
185 186 2.514824 GGGCATTGGAGAGGTCGC 60.515 66.667 0.00 0.00 0.00 5.19
186 187 1.450312 GTGGGCATTGGAGAGGTCG 60.450 63.158 0.00 0.00 0.00 4.79
187 188 0.678048 GTGTGGGCATTGGAGAGGTC 60.678 60.000 0.00 0.00 0.00 3.85
188 189 1.380302 GTGTGGGCATTGGAGAGGT 59.620 57.895 0.00 0.00 0.00 3.85
189 190 0.962356 GTGTGTGGGCATTGGAGAGG 60.962 60.000 0.00 0.00 0.00 3.69
190 191 0.962356 GGTGTGTGGGCATTGGAGAG 60.962 60.000 0.00 0.00 0.00 3.20
191 192 1.074775 GGTGTGTGGGCATTGGAGA 59.925 57.895 0.00 0.00 0.00 3.71
192 193 2.334946 CGGTGTGTGGGCATTGGAG 61.335 63.158 0.00 0.00 0.00 3.86
193 194 2.282110 CGGTGTGTGGGCATTGGA 60.282 61.111 0.00 0.00 0.00 3.53
194 195 3.372730 CCGGTGTGTGGGCATTGG 61.373 66.667 0.00 0.00 0.00 3.16
200 201 4.579384 ACAAGGCCGGTGTGTGGG 62.579 66.667 13.66 0.00 0.00 4.61
201 202 2.518349 AACAAGGCCGGTGTGTGG 60.518 61.111 14.95 0.00 0.00 4.17
202 203 0.250124 TAGAACAAGGCCGGTGTGTG 60.250 55.000 14.95 0.00 0.00 3.82
203 204 0.250166 GTAGAACAAGGCCGGTGTGT 60.250 55.000 14.95 7.18 0.00 3.72
204 205 1.289109 CGTAGAACAAGGCCGGTGTG 61.289 60.000 14.95 6.56 0.00 3.82
205 206 1.005394 CGTAGAACAAGGCCGGTGT 60.005 57.895 9.14 9.14 0.00 4.16
206 207 1.005394 ACGTAGAACAAGGCCGGTG 60.005 57.895 1.90 7.84 0.00 4.94
207 208 1.005394 CACGTAGAACAAGGCCGGT 60.005 57.895 1.90 0.00 0.00 5.28
208 209 1.740296 CCACGTAGAACAAGGCCGG 60.740 63.158 0.00 0.00 0.00 6.13
209 210 2.388232 GCCACGTAGAACAAGGCCG 61.388 63.158 0.00 0.00 39.42 6.13
210 211 0.676782 ATGCCACGTAGAACAAGGCC 60.677 55.000 8.19 0.00 44.60 5.19
211 212 0.447801 CATGCCACGTAGAACAAGGC 59.552 55.000 3.98 3.98 45.41 4.35
212 213 0.447801 GCATGCCACGTAGAACAAGG 59.552 55.000 6.36 0.00 0.00 3.61
213 214 0.095245 CGCATGCCACGTAGAACAAG 59.905 55.000 13.15 0.00 0.00 3.16
214 215 0.319986 TCGCATGCCACGTAGAACAA 60.320 50.000 13.15 0.00 0.00 2.83
215 216 0.319986 TTCGCATGCCACGTAGAACA 60.320 50.000 13.15 0.00 0.00 3.18
216 217 0.793861 TTTCGCATGCCACGTAGAAC 59.206 50.000 13.15 0.00 0.00 3.01
217 218 1.195900 GTTTTCGCATGCCACGTAGAA 59.804 47.619 13.15 5.71 0.00 2.10
218 219 0.793861 GTTTTCGCATGCCACGTAGA 59.206 50.000 13.15 0.00 0.00 2.59
219 220 0.796312 AGTTTTCGCATGCCACGTAG 59.204 50.000 13.15 0.00 0.00 3.51
220 221 0.515127 CAGTTTTCGCATGCCACGTA 59.485 50.000 13.15 0.00 0.00 3.57
221 222 1.282570 CAGTTTTCGCATGCCACGT 59.717 52.632 13.15 0.00 0.00 4.49
222 223 2.082366 GCAGTTTTCGCATGCCACG 61.082 57.895 13.15 0.00 33.81 4.94
223 224 3.846754 GCAGTTTTCGCATGCCAC 58.153 55.556 13.15 3.97 33.81 5.01
226 227 1.512734 CGAGGCAGTTTTCGCATGC 60.513 57.895 7.91 7.91 39.25 4.06
227 228 1.135315 CCGAGGCAGTTTTCGCATG 59.865 57.895 0.00 0.00 35.58 4.06
228 229 1.302511 ACCGAGGCAGTTTTCGCAT 60.303 52.632 0.00 0.00 35.58 4.73
229 230 2.110213 ACCGAGGCAGTTTTCGCA 59.890 55.556 0.00 0.00 35.58 5.10
230 231 2.251642 ACACCGAGGCAGTTTTCGC 61.252 57.895 0.00 0.00 35.58 4.70
231 232 1.157870 ACACACCGAGGCAGTTTTCG 61.158 55.000 0.00 0.00 36.62 3.46
232 233 0.586802 GACACACCGAGGCAGTTTTC 59.413 55.000 0.00 0.00 0.00 2.29
233 234 0.107410 TGACACACCGAGGCAGTTTT 60.107 50.000 0.00 0.00 0.00 2.43
234 235 0.107410 TTGACACACCGAGGCAGTTT 60.107 50.000 0.00 0.00 0.00 2.66
235 236 0.532862 CTTGACACACCGAGGCAGTT 60.533 55.000 0.00 0.00 0.00 3.16
236 237 1.069765 CTTGACACACCGAGGCAGT 59.930 57.895 0.00 0.00 0.00 4.40
237 238 0.036952 ATCTTGACACACCGAGGCAG 60.037 55.000 0.00 0.00 0.00 4.85
238 239 0.396435 AATCTTGACACACCGAGGCA 59.604 50.000 0.00 0.00 0.00 4.75
239 240 1.079503 GAATCTTGACACACCGAGGC 58.920 55.000 0.00 0.00 0.00 4.70
240 241 1.336887 ACGAATCTTGACACACCGAGG 60.337 52.381 0.00 0.00 0.00 4.63
241 242 1.721389 CACGAATCTTGACACACCGAG 59.279 52.381 0.00 0.00 0.00 4.63
242 243 1.778334 CACGAATCTTGACACACCGA 58.222 50.000 0.00 0.00 0.00 4.69
243 244 0.163788 GCACGAATCTTGACACACCG 59.836 55.000 0.00 0.00 0.00 4.94
244 245 1.225855 TGCACGAATCTTGACACACC 58.774 50.000 0.00 0.00 0.00 4.16
245 246 3.035942 GTTTGCACGAATCTTGACACAC 58.964 45.455 0.00 0.00 0.00 3.82
246 247 2.942376 AGTTTGCACGAATCTTGACACA 59.058 40.909 0.00 0.00 0.00 3.72
247 248 3.609103 AGTTTGCACGAATCTTGACAC 57.391 42.857 0.00 0.00 0.00 3.67
248 249 5.743026 TTAAGTTTGCACGAATCTTGACA 57.257 34.783 0.00 0.00 0.00 3.58
249 250 6.088085 CCAATTAAGTTTGCACGAATCTTGAC 59.912 38.462 0.00 0.00 0.00 3.18
250 251 6.016693 TCCAATTAAGTTTGCACGAATCTTGA 60.017 34.615 0.00 0.00 0.00 3.02
251 252 6.088085 GTCCAATTAAGTTTGCACGAATCTTG 59.912 38.462 0.00 0.00 0.00 3.02
252 253 6.149633 GTCCAATTAAGTTTGCACGAATCTT 58.850 36.000 0.00 0.00 0.00 2.40
253 254 5.616866 CGTCCAATTAAGTTTGCACGAATCT 60.617 40.000 0.00 0.00 42.03 2.40
254 255 4.553429 CGTCCAATTAAGTTTGCACGAATC 59.447 41.667 0.00 0.00 42.03 2.52
255 256 4.472286 CGTCCAATTAAGTTTGCACGAAT 58.528 39.130 0.00 0.00 42.03 3.34
256 257 3.304123 CCGTCCAATTAAGTTTGCACGAA 60.304 43.478 6.80 0.00 42.03 3.85
257 258 2.224549 CCGTCCAATTAAGTTTGCACGA 59.775 45.455 6.80 0.00 42.03 4.35
258 259 2.031508 ACCGTCCAATTAAGTTTGCACG 60.032 45.455 0.00 0.00 39.79 5.34
259 260 3.003897 TCACCGTCCAATTAAGTTTGCAC 59.996 43.478 0.00 0.00 0.00 4.57
260 261 3.215151 TCACCGTCCAATTAAGTTTGCA 58.785 40.909 0.00 0.00 0.00 4.08
261 262 3.907894 TCACCGTCCAATTAAGTTTGC 57.092 42.857 0.00 0.00 0.00 3.68
262 263 4.457603 TGGATCACCGTCCAATTAAGTTTG 59.542 41.667 0.00 0.00 45.03 2.93
263 264 4.658063 TGGATCACCGTCCAATTAAGTTT 58.342 39.130 0.00 0.00 45.03 2.66
264 265 4.295141 TGGATCACCGTCCAATTAAGTT 57.705 40.909 0.00 0.00 45.03 2.66
265 266 3.992943 TGGATCACCGTCCAATTAAGT 57.007 42.857 0.00 0.00 45.03 2.24
273 274 2.173669 CACGCATGGATCACCGTCC 61.174 63.158 0.00 0.00 39.42 4.79
274 275 3.398920 CACGCATGGATCACCGTC 58.601 61.111 0.00 0.00 39.42 4.79
283 284 3.803082 CAACTCGCCCACGCATGG 61.803 66.667 0.00 0.00 46.81 3.66
284 285 4.465512 GCAACTCGCCCACGCATG 62.466 66.667 0.00 0.00 39.84 4.06
288 289 3.716006 CACTGCAACTCGCCCACG 61.716 66.667 0.00 0.00 41.33 4.94
289 290 2.186826 AACACTGCAACTCGCCCAC 61.187 57.895 0.00 0.00 41.33 4.61
290 291 2.186160 CAACACTGCAACTCGCCCA 61.186 57.895 0.00 0.00 41.33 5.36
291 292 2.639286 CAACACTGCAACTCGCCC 59.361 61.111 0.00 0.00 41.33 6.13
315 316 0.385098 GAAAACACTAACGCCCACGC 60.385 55.000 0.00 0.00 45.53 5.34
317 318 1.219646 TCGAAAACACTAACGCCCAC 58.780 50.000 0.00 0.00 0.00 4.61
318 319 2.172851 ATCGAAAACACTAACGCCCA 57.827 45.000 0.00 0.00 0.00 5.36
319 320 4.666928 TTAATCGAAAACACTAACGCCC 57.333 40.909 0.00 0.00 0.00 6.13
320 321 8.170553 TCTTTATTAATCGAAAACACTAACGCC 58.829 33.333 0.00 0.00 0.00 5.68
321 322 9.195831 CTCTTTATTAATCGAAAACACTAACGC 57.804 33.333 0.00 0.00 0.00 4.84
370 371 6.150976 TCTGCATCACGGAGAAAAATATGTTT 59.849 34.615 0.00 0.00 39.46 2.83
373 374 5.739752 TCTGCATCACGGAGAAAAATATG 57.260 39.130 0.00 0.00 39.46 1.78
380 381 0.538584 AGCATCTGCATCACGGAGAA 59.461 50.000 4.79 0.00 46.21 2.87
385 386 4.093998 ACTCTTTTAAGCATCTGCATCACG 59.906 41.667 4.79 0.00 45.16 4.35
407 408 5.188327 TCATGTCGGTGATTCTCATCTAC 57.812 43.478 0.00 0.00 0.00 2.59
412 413 5.237127 GCAAATATCATGTCGGTGATTCTCA 59.763 40.000 0.00 0.00 39.45 3.27
425 426 3.004419 CAGCTGGTCCTGCAAATATCATG 59.996 47.826 21.49 5.85 0.00 3.07
426 427 3.220110 CAGCTGGTCCTGCAAATATCAT 58.780 45.455 21.49 0.00 0.00 2.45
431 432 4.428845 CCAGCTGGTCCTGCAAAT 57.571 55.556 25.53 0.00 0.00 2.32
441 442 0.393537 GGTGAAGGATGACCAGCTGG 60.394 60.000 31.60 31.60 38.94 4.85
442 443 0.617413 AGGTGAAGGATGACCAGCTG 59.383 55.000 6.78 6.78 37.28 4.24
443 444 2.254152 TAGGTGAAGGATGACCAGCT 57.746 50.000 0.00 0.00 41.00 4.24
444 445 2.703007 AGATAGGTGAAGGATGACCAGC 59.297 50.000 0.00 0.00 38.94 4.85
446 447 4.361783 TCAAGATAGGTGAAGGATGACCA 58.638 43.478 0.00 0.00 38.94 4.02
447 448 5.359194 TTCAAGATAGGTGAAGGATGACC 57.641 43.478 0.00 0.00 31.45 4.02
471 472 1.982073 GATCAAAGGGCTCCGTTGCG 61.982 60.000 12.68 0.00 41.49 4.85
497 498 3.891366 CAGAAACAAACCTCCCATTGTCT 59.109 43.478 0.00 0.00 38.75 3.41
512 513 3.698539 TCCAGCATTCAACAACAGAAACA 59.301 39.130 0.00 0.00 0.00 2.83
513 514 4.044426 GTCCAGCATTCAACAACAGAAAC 58.956 43.478 0.00 0.00 0.00 2.78
514 515 3.953612 AGTCCAGCATTCAACAACAGAAA 59.046 39.130 0.00 0.00 0.00 2.52
515 516 3.316029 CAGTCCAGCATTCAACAACAGAA 59.684 43.478 0.00 0.00 0.00 3.02
542 543 5.460646 CAACGGATAGAAAGCAACAACATT 58.539 37.500 0.00 0.00 0.00 2.71
543 544 4.615912 GCAACGGATAGAAAGCAACAACAT 60.616 41.667 0.00 0.00 0.00 2.71
544 545 3.304391 GCAACGGATAGAAAGCAACAACA 60.304 43.478 0.00 0.00 0.00 3.33
560 561 0.040425 CCCTTCACGAAAAGCAACGG 60.040 55.000 0.00 0.00 0.00 4.44
561 562 0.661020 ACCCTTCACGAAAAGCAACG 59.339 50.000 0.00 0.00 0.00 4.10
582 583 4.887748 ACATGGTACTTGTCTGAACTCTG 58.112 43.478 0.00 0.00 0.00 3.35
591 592 1.173913 GGCCCAACATGGTACTTGTC 58.826 55.000 0.00 0.00 35.17 3.18
597 598 0.621609 GTAGGTGGCCCAACATGGTA 59.378 55.000 0.00 0.00 35.17 3.25
601 602 0.620556 CTCTGTAGGTGGCCCAACAT 59.379 55.000 0.00 0.00 0.00 2.71
606 607 2.579410 TTTTTCTCTGTAGGTGGCCC 57.421 50.000 0.00 0.00 0.00 5.80
637 639 8.668353 TCGATCCAAAAACTGATGAAATTAGAG 58.332 33.333 0.00 0.00 32.93 2.43
649 651 7.751732 TCATTATTCACTCGATCCAAAAACTG 58.248 34.615 0.00 0.00 0.00 3.16
661 663 5.050769 GCACACCACTATCATTATTCACTCG 60.051 44.000 0.00 0.00 0.00 4.18
670 672 5.116084 ACAATAGGCACACCACTATCATT 57.884 39.130 0.00 0.00 39.06 2.57
728 730 1.966451 CAGCTCACGTCCCCCAAAC 60.966 63.158 0.00 0.00 0.00 2.93
733 735 4.038883 ACTTTATATACAGCTCACGTCCCC 59.961 45.833 0.00 0.00 0.00 4.81
736 738 4.444720 GGCACTTTATATACAGCTCACGTC 59.555 45.833 0.00 0.00 0.00 4.34
781 783 8.463930 TCAACTTGTCCAGATTCTACAAAATT 57.536 30.769 4.13 0.45 33.05 1.82
782 784 8.463930 TTCAACTTGTCCAGATTCTACAAAAT 57.536 30.769 4.13 0.00 33.05 1.82
784 786 9.567776 TTATTCAACTTGTCCAGATTCTACAAA 57.432 29.630 4.13 0.00 33.05 2.83
785 787 9.219603 CTTATTCAACTTGTCCAGATTCTACAA 57.780 33.333 2.81 2.81 0.00 2.41
786 788 8.375506 ACTTATTCAACTTGTCCAGATTCTACA 58.624 33.333 0.00 0.00 0.00 2.74
789 791 8.816894 TCTACTTATTCAACTTGTCCAGATTCT 58.183 33.333 0.00 0.00 0.00 2.40
790 792 9.606631 ATCTACTTATTCAACTTGTCCAGATTC 57.393 33.333 0.00 0.00 0.00 2.52
791 793 9.388506 CATCTACTTATTCAACTTGTCCAGATT 57.611 33.333 0.00 0.00 0.00 2.40
793 795 6.818644 GCATCTACTTATTCAACTTGTCCAGA 59.181 38.462 0.00 0.00 0.00 3.86
794 796 6.820656 AGCATCTACTTATTCAACTTGTCCAG 59.179 38.462 0.00 0.00 0.00 3.86
795 797 6.595326 CAGCATCTACTTATTCAACTTGTCCA 59.405 38.462 0.00 0.00 0.00 4.02
796 798 6.037610 CCAGCATCTACTTATTCAACTTGTCC 59.962 42.308 0.00 0.00 0.00 4.02
818 1197 2.686816 CCGTTTGGTTAGCGCCCAG 61.687 63.158 2.29 0.00 32.49 4.45
836 1215 3.728292 CCCTTGCCATCTCAGGGGC 62.728 68.421 1.56 1.56 44.82 5.80
837 1216 2.599597 CCCTTGCCATCTCAGGGG 59.400 66.667 0.00 0.00 45.26 4.79
895 1274 1.211949 TGGGCCTTTTTCTATCCGGAG 59.788 52.381 11.34 0.00 0.00 4.63
896 1275 1.064979 GTGGGCCTTTTTCTATCCGGA 60.065 52.381 6.61 6.61 0.00 5.14
897 1276 1.064685 AGTGGGCCTTTTTCTATCCGG 60.065 52.381 4.53 0.00 0.00 5.14
899 1278 3.203716 CGTAGTGGGCCTTTTTCTATCC 58.796 50.000 4.53 0.00 0.00 2.59
900 1279 2.612672 GCGTAGTGGGCCTTTTTCTATC 59.387 50.000 4.53 0.00 0.00 2.08
901 1280 2.238898 AGCGTAGTGGGCCTTTTTCTAT 59.761 45.455 4.53 0.00 0.00 1.98
905 1284 0.109723 TGAGCGTAGTGGGCCTTTTT 59.890 50.000 4.53 0.00 0.00 1.94
906 1285 0.605589 GTGAGCGTAGTGGGCCTTTT 60.606 55.000 4.53 0.00 0.00 2.27
907 1286 1.003718 GTGAGCGTAGTGGGCCTTT 60.004 57.895 4.53 0.00 0.00 3.11
908 1287 1.553690 ATGTGAGCGTAGTGGGCCTT 61.554 55.000 4.53 0.00 0.00 4.35
909 1288 0.686441 TATGTGAGCGTAGTGGGCCT 60.686 55.000 4.53 0.00 0.00 5.19
910 1289 0.249489 CTATGTGAGCGTAGTGGGCC 60.249 60.000 0.00 0.00 31.31 5.80
911 1290 0.744874 TCTATGTGAGCGTAGTGGGC 59.255 55.000 0.00 0.00 36.04 5.36
912 1291 3.520290 TTTCTATGTGAGCGTAGTGGG 57.480 47.619 0.00 0.00 36.04 4.61
913 1292 4.929808 ACTTTTTCTATGTGAGCGTAGTGG 59.070 41.667 0.00 0.00 36.04 4.00
914 1293 5.864474 AGACTTTTTCTATGTGAGCGTAGTG 59.136 40.000 0.00 0.00 36.04 2.74
915 1294 6.026947 AGACTTTTTCTATGTGAGCGTAGT 57.973 37.500 0.00 0.00 36.04 2.73
916 1295 5.228220 CGAGACTTTTTCTATGTGAGCGTAG 59.772 44.000 0.00 0.00 33.22 3.51
917 1296 5.093457 CGAGACTTTTTCTATGTGAGCGTA 58.907 41.667 0.00 0.00 33.22 4.42
918 1297 3.921021 CGAGACTTTTTCTATGTGAGCGT 59.079 43.478 0.00 0.00 33.22 5.07
919 1298 3.241804 GCGAGACTTTTTCTATGTGAGCG 60.242 47.826 0.00 0.00 33.22 5.03
920 1299 3.929610 AGCGAGACTTTTTCTATGTGAGC 59.070 43.478 0.00 0.00 33.22 4.26
921 1300 5.061560 GTGAGCGAGACTTTTTCTATGTGAG 59.938 44.000 0.00 0.00 33.22 3.51
922 1301 4.923871 GTGAGCGAGACTTTTTCTATGTGA 59.076 41.667 0.00 0.00 33.22 3.58
923 1302 4.092091 GGTGAGCGAGACTTTTTCTATGTG 59.908 45.833 0.00 0.00 33.22 3.21
924 1303 4.246458 GGTGAGCGAGACTTTTTCTATGT 58.754 43.478 0.00 0.00 33.22 2.29
925 1304 3.304559 CGGTGAGCGAGACTTTTTCTATG 59.695 47.826 0.00 0.00 33.22 2.23
926 1305 3.512680 CGGTGAGCGAGACTTTTTCTAT 58.487 45.455 0.00 0.00 33.22 1.98
927 1306 2.925306 GCGGTGAGCGAGACTTTTTCTA 60.925 50.000 8.74 0.00 32.33 2.10
928 1307 1.784525 CGGTGAGCGAGACTTTTTCT 58.215 50.000 0.00 0.00 37.23 2.52
929 1308 0.164002 GCGGTGAGCGAGACTTTTTC 59.836 55.000 8.74 0.00 35.41 2.29
930 1309 2.235546 GCGGTGAGCGAGACTTTTT 58.764 52.632 8.74 0.00 35.41 1.94
931 1310 3.952811 GCGGTGAGCGAGACTTTT 58.047 55.556 8.74 0.00 35.41 2.27
1029 1416 2.175202 GGTGGAGAAGAGAGAAGCTGA 58.825 52.381 0.00 0.00 0.00 4.26
1035 1422 1.000486 CGGGGGTGGAGAAGAGAGA 60.000 63.158 0.00 0.00 0.00 3.10
1467 1860 1.657804 GGAGGAGGTTCTGGAAGGAA 58.342 55.000 0.00 0.00 0.00 3.36
1474 1867 1.079543 CAGCACGGAGGAGGTTCTG 60.080 63.158 0.00 0.00 0.00 3.02
1519 1912 2.571216 CCACCGTCTCGAGGTTGGT 61.571 63.158 13.56 14.74 40.59 3.67
1570 1963 1.958288 ATGTTGGAGTCACCTAGCCT 58.042 50.000 0.00 0.00 39.86 4.58
1585 1978 1.001378 GACGCTCAACTTGGCAATGTT 60.001 47.619 0.00 4.84 0.00 2.71
1739 2132 1.745489 ACTTTGGCGGCGATCTTCC 60.745 57.895 12.98 1.37 0.00 3.46
1765 2170 1.068474 CACCTAAACGTCGCCTTCAG 58.932 55.000 0.00 0.00 0.00 3.02
1771 2176 0.038892 TCTGACCACCTAAACGTCGC 60.039 55.000 0.00 0.00 0.00 5.19
1801 2206 3.430098 GGAAACTTGGACACAACAATGCA 60.430 43.478 0.00 0.00 32.14 3.96
1827 2232 4.744570 TCTGGTTAGAACTTATCAGCACG 58.255 43.478 0.00 0.00 0.00 5.34
1981 2386 6.152661 TGACGAAGCAATCCATTTTCCTTAAT 59.847 34.615 0.00 0.00 0.00 1.40
2133 2538 6.406370 TCATGTGAATCTGAAATTAGTCGGT 58.594 36.000 0.00 0.00 0.00 4.69
2168 6719 6.853872 GCACACAGTTACGAATTTTCATAACA 59.146 34.615 10.72 0.00 38.06 2.41
2262 6814 7.396540 ACATATCAGGATTCAGAAACAAACC 57.603 36.000 0.00 0.00 0.00 3.27
2306 6859 5.492895 TCATAACGAAGCCATGGTTTCTTA 58.507 37.500 31.05 26.28 33.99 2.10
2371 8918 5.350091 GGCTTCATCTCACACTTTCTTAGTC 59.650 44.000 0.00 0.00 33.85 2.59
2461 9008 1.276989 CTGGATGCAAACAAGCCCATT 59.723 47.619 0.00 0.00 0.00 3.16
2468 9015 1.114119 TGCTGGCTGGATGCAAACAA 61.114 50.000 0.00 0.00 45.15 2.83
2498 9046 7.330262 AGCCAGTCAATACCCAAATATTTTTG 58.670 34.615 0.00 0.84 41.59 2.44
2503 9051 5.518865 ACAAGCCAGTCAATACCCAAATAT 58.481 37.500 0.00 0.00 0.00 1.28
2504 9052 4.929479 ACAAGCCAGTCAATACCCAAATA 58.071 39.130 0.00 0.00 0.00 1.40
2505 9053 3.778265 ACAAGCCAGTCAATACCCAAAT 58.222 40.909 0.00 0.00 0.00 2.32
2506 9054 3.237268 ACAAGCCAGTCAATACCCAAA 57.763 42.857 0.00 0.00 0.00 3.28
2507 9055 2.969821 ACAAGCCAGTCAATACCCAA 57.030 45.000 0.00 0.00 0.00 4.12
2508 9056 2.969821 AACAAGCCAGTCAATACCCA 57.030 45.000 0.00 0.00 0.00 4.51
2509 9057 2.683362 GCTAACAAGCCAGTCAATACCC 59.317 50.000 0.00 0.00 0.00 3.69
2524 9072 1.960689 GCTTCCAACCAAAGGCTAACA 59.039 47.619 0.00 0.00 0.00 2.41
2528 9076 0.185901 TCTGCTTCCAACCAAAGGCT 59.814 50.000 0.00 0.00 0.00 4.58
2579 9127 2.826128 ACCTGATGCTAGAACTGAACGA 59.174 45.455 0.00 0.00 0.00 3.85
2580 9128 3.238108 ACCTGATGCTAGAACTGAACG 57.762 47.619 0.00 0.00 0.00 3.95
2594 9142 3.596214 GTGGATACGACAACAACCTGAT 58.404 45.455 0.00 0.00 42.51 2.90
2607 9155 6.758202 GCACTATTTTGCCACGTGGATACG 62.758 50.000 38.30 19.09 45.14 3.06
2609 9157 2.680841 GCACTATTTTGCCACGTGGATA 59.319 45.455 38.30 23.40 36.42 2.59
2616 9164 7.420184 AAAAATTAGTGCACTATTTTGCCAC 57.580 32.000 31.96 1.59 42.25 5.01
2651 9199 1.544724 GTACCAGCCTTGCCAAATCA 58.455 50.000 0.00 0.00 0.00 2.57
2692 9240 2.158885 GGAGACCTTACCTTGGCTCATC 60.159 54.545 0.00 0.00 32.95 2.92
2693 9241 1.840635 GGAGACCTTACCTTGGCTCAT 59.159 52.381 0.00 0.00 32.95 2.90
2722 9270 9.832445 GAATAGAACATTAGGAGTTCATTACCA 57.168 33.333 8.54 0.00 45.93 3.25
2754 9309 8.303780 TCCAATTATCCACTATGAATTGCAAA 57.696 30.769 1.71 0.00 37.76 3.68
2810 9365 1.356124 ACATCCACTCCAGTTGCTCT 58.644 50.000 0.00 0.00 0.00 4.09
2820 9375 0.393537 CCAGGAGGCAACATCCACTC 60.394 60.000 0.68 0.00 39.47 3.51
2823 9378 1.379916 CACCAGGAGGCAACATCCA 59.620 57.895 0.00 0.00 39.47 3.41
2825 9380 2.290323 ACTAACACCAGGAGGCAACATC 60.290 50.000 0.00 0.00 39.06 3.06
2851 9406 9.760077 ACAGGTTAATTGATACTCCTAAATACG 57.240 33.333 0.00 0.00 0.00 3.06
2880 9435 9.643693 CAACAACTGAAAATAAGATTAAGCCAT 57.356 29.630 0.00 0.00 0.00 4.40
3003 9558 9.421806 CTTCCATAGACTTTCAATAGCTGATAG 57.578 37.037 0.00 0.00 38.63 2.08
3054 9609 7.275888 TCTGAACCAAGTAAAGTCGTACTAA 57.724 36.000 0.00 0.00 33.05 2.24
3099 9894 4.960469 CCAGTAGGTATTTCCAGTAGGACA 59.040 45.833 0.00 0.00 45.73 4.02
3118 9913 2.119495 CCAGTTATCCTACAGCCCAGT 58.881 52.381 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.