Multiple sequence alignment - TraesCS3D01G072900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G072900 chr3D 100.000 5607 0 0 1 5607 33156058 33150452 0.000000e+00 10355.0
1 TraesCS3D01G072900 chr3D 87.666 981 91 8 4647 5601 379668836 379667860 0.000000e+00 1114.0
2 TraesCS3D01G072900 chr3B 93.140 1866 87 19 2749 4596 55405436 55403594 0.000000e+00 2699.0
3 TraesCS3D01G072900 chr3B 87.412 1279 107 30 260 1508 55407625 55406371 0.000000e+00 1421.0
4 TraesCS3D01G072900 chr3B 87.360 981 98 6 4647 5601 716037413 716038393 0.000000e+00 1101.0
5 TraesCS3D01G072900 chr3B 85.700 979 113 14 4647 5601 398298743 398299718 0.000000e+00 1007.0
6 TraesCS3D01G072900 chr3B 91.406 512 25 4 2089 2587 55405940 55405435 0.000000e+00 684.0
7 TraesCS3D01G072900 chr3B 90.239 461 21 12 1587 2046 55406370 55405933 1.050000e-161 580.0
8 TraesCS3D01G072900 chr3B 92.105 266 20 1 1 265 55452943 55452678 1.910000e-99 374.0
9 TraesCS3D01G072900 chr3B 88.312 154 16 1 1 152 495855832 495855679 3.450000e-42 183.0
10 TraesCS3D01G072900 chr3B 84.158 101 15 1 315 414 55453306 55453206 4.620000e-16 97.1
11 TraesCS3D01G072900 chr3A 93.460 1789 90 13 2749 4516 45565975 45564193 0.000000e+00 2630.0
12 TraesCS3D01G072900 chr3A 87.421 795 52 16 852 1605 45568250 45567463 0.000000e+00 870.0
13 TraesCS3D01G072900 chr3A 90.039 512 28 7 2089 2587 45566475 45565974 4.740000e-180 641.0
14 TraesCS3D01G072900 chr3A 88.889 396 26 8 1659 2046 45566853 45566468 6.580000e-129 472.0
15 TraesCS3D01G072900 chr3A 93.814 97 3 1 4510 4603 45564164 45564068 5.860000e-30 143.0
16 TraesCS3D01G072900 chr7D 88.277 981 89 3 4647 5601 477790819 477789839 0.000000e+00 1151.0
17 TraesCS3D01G072900 chr7D 87.603 968 106 5 4647 5601 103410929 103411895 0.000000e+00 1110.0
18 TraesCS3D01G072900 chr4D 87.971 981 92 6 4647 5601 78397703 78396723 0.000000e+00 1134.0
19 TraesCS3D01G072900 chr4D 86.741 988 102 15 4647 5607 329333146 329332161 0.000000e+00 1072.0
20 TraesCS3D01G072900 chr4D 87.823 813 73 3 4818 5604 177038212 177037400 0.000000e+00 929.0
21 TraesCS3D01G072900 chr1D 87.901 967 103 5 4647 5601 71420838 71419874 0.000000e+00 1125.0
22 TraesCS3D01G072900 chr6D 87.768 981 94 6 4647 5601 84126593 84125613 0.000000e+00 1123.0
23 TraesCS3D01G072900 chr6D 87.782 974 93 5 4654 5601 105708554 105709527 0.000000e+00 1116.0
24 TraesCS3D01G072900 chr5B 87.666 981 95 6 4647 5601 140879445 140878465 0.000000e+00 1118.0
25 TraesCS3D01G072900 chr5B 86.748 981 104 6 4647 5601 661096886 661097866 0.000000e+00 1068.0
26 TraesCS3D01G072900 chr2B 87.666 981 95 6 4647 5601 675654751 675655731 0.000000e+00 1118.0
27 TraesCS3D01G072900 chr1A 87.410 969 107 6 4647 5601 233683681 233684648 0.000000e+00 1099.0
28 TraesCS3D01G072900 chrUn 87.487 959 111 6 4647 5601 58495163 58494210 0.000000e+00 1098.0
29 TraesCS3D01G072900 chr2D 85.831 981 100 9 4647 5601 380266705 380267672 0.000000e+00 1005.0
30 TraesCS3D01G072900 chr2D 86.213 544 51 8 4647 5166 282536499 282537042 8.150000e-158 568.0
31 TraesCS3D01G072900 chr4A 85.744 968 113 6 4647 5601 87906959 87906004 0.000000e+00 1000.0
32 TraesCS3D01G072900 chr7B 86.207 928 90 12 4647 5548 407068755 407069670 0.000000e+00 970.0
33 TraesCS3D01G072900 chr7B 86.029 544 50 8 4647 5165 152231451 152230909 1.360000e-155 560.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G072900 chr3D 33150452 33156058 5606 True 10355.00 10355 100.00000 1 5607 1 chr3D.!!$R1 5606
1 TraesCS3D01G072900 chr3D 379667860 379668836 976 True 1114.00 1114 87.66600 4647 5601 1 chr3D.!!$R2 954
2 TraesCS3D01G072900 chr3B 55403594 55407625 4031 True 1346.00 2699 90.54925 260 4596 4 chr3B.!!$R2 4336
3 TraesCS3D01G072900 chr3B 716037413 716038393 980 False 1101.00 1101 87.36000 4647 5601 1 chr3B.!!$F2 954
4 TraesCS3D01G072900 chr3B 398298743 398299718 975 False 1007.00 1007 85.70000 4647 5601 1 chr3B.!!$F1 954
5 TraesCS3D01G072900 chr3B 55452678 55453306 628 True 235.55 374 88.13150 1 414 2 chr3B.!!$R3 413
6 TraesCS3D01G072900 chr3A 45564068 45568250 4182 True 951.20 2630 90.72460 852 4603 5 chr3A.!!$R1 3751
7 TraesCS3D01G072900 chr7D 477789839 477790819 980 True 1151.00 1151 88.27700 4647 5601 1 chr7D.!!$R1 954
8 TraesCS3D01G072900 chr7D 103410929 103411895 966 False 1110.00 1110 87.60300 4647 5601 1 chr7D.!!$F1 954
9 TraesCS3D01G072900 chr4D 78396723 78397703 980 True 1134.00 1134 87.97100 4647 5601 1 chr4D.!!$R1 954
10 TraesCS3D01G072900 chr4D 329332161 329333146 985 True 1072.00 1072 86.74100 4647 5607 1 chr4D.!!$R3 960
11 TraesCS3D01G072900 chr4D 177037400 177038212 812 True 929.00 929 87.82300 4818 5604 1 chr4D.!!$R2 786
12 TraesCS3D01G072900 chr1D 71419874 71420838 964 True 1125.00 1125 87.90100 4647 5601 1 chr1D.!!$R1 954
13 TraesCS3D01G072900 chr6D 84125613 84126593 980 True 1123.00 1123 87.76800 4647 5601 1 chr6D.!!$R1 954
14 TraesCS3D01G072900 chr6D 105708554 105709527 973 False 1116.00 1116 87.78200 4654 5601 1 chr6D.!!$F1 947
15 TraesCS3D01G072900 chr5B 140878465 140879445 980 True 1118.00 1118 87.66600 4647 5601 1 chr5B.!!$R1 954
16 TraesCS3D01G072900 chr5B 661096886 661097866 980 False 1068.00 1068 86.74800 4647 5601 1 chr5B.!!$F1 954
17 TraesCS3D01G072900 chr2B 675654751 675655731 980 False 1118.00 1118 87.66600 4647 5601 1 chr2B.!!$F1 954
18 TraesCS3D01G072900 chr1A 233683681 233684648 967 False 1099.00 1099 87.41000 4647 5601 1 chr1A.!!$F1 954
19 TraesCS3D01G072900 chrUn 58494210 58495163 953 True 1098.00 1098 87.48700 4647 5601 1 chrUn.!!$R1 954
20 TraesCS3D01G072900 chr2D 380266705 380267672 967 False 1005.00 1005 85.83100 4647 5601 1 chr2D.!!$F2 954
21 TraesCS3D01G072900 chr2D 282536499 282537042 543 False 568.00 568 86.21300 4647 5166 1 chr2D.!!$F1 519
22 TraesCS3D01G072900 chr4A 87906004 87906959 955 True 1000.00 1000 85.74400 4647 5601 1 chr4A.!!$R1 954
23 TraesCS3D01G072900 chr7B 407068755 407069670 915 False 970.00 970 86.20700 4647 5548 1 chr7B.!!$F1 901
24 TraesCS3D01G072900 chr7B 152230909 152231451 542 True 560.00 560 86.02900 4647 5165 1 chr7B.!!$R1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
900 1269 0.103572 AAATCCGCAGCCGTACGTAT 59.896 50.0 15.21 0.00 0.00 3.06 F
1639 2610 0.107831 TTCAGTCCCAAGTCCCAACG 59.892 55.0 0.00 0.00 0.00 4.10 F
2592 3634 0.245539 AATGGTTCATGCAGTGCAGC 59.754 50.0 24.20 12.75 43.65 5.25 F
3663 4720 0.253160 ATGTGGGAGGAAGGGTGCTA 60.253 55.0 0.00 0.00 0.00 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1787 2802 0.034059 AGCATTCATCCGTCCGATCC 59.966 55.0 0.00 0.00 0.00 3.36 R
2894 3936 0.247460 TCACCGTCAGCTTGATGAGG 59.753 55.0 6.87 2.14 35.46 3.86 R
4417 5481 0.822164 ACCACTATGTACTCGGCACC 59.178 55.0 0.00 0.00 0.00 5.01 R
4610 5714 0.095935 CATCAACAAGCGCTCGGAAG 59.904 55.0 12.06 4.85 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 459 4.702131 AGCACCATCAAACAGGTTAATCTC 59.298 41.667 0.00 0.00 35.52 2.75
103 467 6.173339 TCAAACAGGTTAATCTCTGCTAAGG 58.827 40.000 0.00 0.00 34.57 2.69
112 476 8.204836 GGTTAATCTCTGCTAAGGATCTTTACA 58.795 37.037 0.00 0.00 0.00 2.41
113 477 9.036671 GTTAATCTCTGCTAAGGATCTTTACAC 57.963 37.037 0.00 0.00 0.00 2.90
115 479 4.098044 TCTCTGCTAAGGATCTTTACACGG 59.902 45.833 0.00 0.00 0.00 4.94
132 496 1.066858 ACGGATCAGTTCACGCAATCT 60.067 47.619 0.00 0.00 0.00 2.40
134 498 1.590238 GGATCAGTTCACGCAATCTCG 59.410 52.381 0.00 0.00 0.00 4.04
135 499 2.263077 GATCAGTTCACGCAATCTCGT 58.737 47.619 0.00 0.00 44.35 4.18
140 504 2.407361 AGTTCACGCAATCTCGTAAACG 59.593 45.455 0.00 0.00 43.34 3.60
195 559 4.760047 CGTTCCCCGTGCCTCCAG 62.760 72.222 0.00 0.00 0.00 3.86
256 620 3.844090 GAGCTCTCGGGTGGAGGC 61.844 72.222 6.43 0.00 43.34 4.70
257 621 4.390556 AGCTCTCGGGTGGAGGCT 62.391 66.667 0.00 0.00 43.34 4.58
258 622 3.844090 GCTCTCGGGTGGAGGCTC 61.844 72.222 5.78 5.78 43.34 4.70
289 653 5.207110 TGCTGATTGAGTAGCTAATCCTC 57.793 43.478 17.93 14.40 40.52 3.71
292 656 5.279910 GCTGATTGAGTAGCTAATCCTCCAT 60.280 44.000 17.93 7.32 36.99 3.41
352 716 5.005628 AGAGGAGAGTTCAGGTAAGTTCT 57.994 43.478 0.00 0.00 0.00 3.01
354 718 3.259625 AGGAGAGTTCAGGTAAGTTCTGC 59.740 47.826 0.00 0.00 32.63 4.26
391 755 2.136298 TTTCTTTCTGGGTGCACACA 57.864 45.000 22.84 22.84 0.00 3.72
405 769 3.004210 GTGCACACAACATACATCCACAA 59.996 43.478 13.17 0.00 0.00 3.33
406 770 3.004210 TGCACACAACATACATCCACAAC 59.996 43.478 0.00 0.00 0.00 3.32
407 771 3.004210 GCACACAACATACATCCACAACA 59.996 43.478 0.00 0.00 0.00 3.33
408 772 4.321156 GCACACAACATACATCCACAACAT 60.321 41.667 0.00 0.00 0.00 2.71
409 773 5.155643 CACACAACATACATCCACAACATG 58.844 41.667 0.00 0.00 0.00 3.21
410 774 4.168014 CACAACATACATCCACAACATGC 58.832 43.478 0.00 0.00 0.00 4.06
411 775 3.825585 ACAACATACATCCACAACATGCA 59.174 39.130 0.00 0.00 0.00 3.96
412 776 4.168014 CAACATACATCCACAACATGCAC 58.832 43.478 0.00 0.00 0.00 4.57
413 777 3.419943 ACATACATCCACAACATGCACA 58.580 40.909 0.00 0.00 0.00 4.57
414 778 4.018490 ACATACATCCACAACATGCACAT 58.982 39.130 0.00 0.00 0.00 3.21
418 782 3.575256 ACATCCACAACATGCACATTCTT 59.425 39.130 0.00 0.00 0.00 2.52
423 787 4.209703 CCACAACATGCACATTCTTTGTTC 59.790 41.667 0.00 0.00 36.00 3.18
440 804 8.331730 TCTTTGTTCTACATTTTAGCCCTTAC 57.668 34.615 0.00 0.00 0.00 2.34
441 805 7.392393 TCTTTGTTCTACATTTTAGCCCTTACC 59.608 37.037 0.00 0.00 0.00 2.85
447 813 2.590282 TTTTAGCCCTTACCACACCC 57.410 50.000 0.00 0.00 0.00 4.61
454 820 2.555670 GCCCTTACCACACCCAACAATA 60.556 50.000 0.00 0.00 0.00 1.90
455 821 3.352648 CCCTTACCACACCCAACAATAG 58.647 50.000 0.00 0.00 0.00 1.73
464 830 2.228822 CACCCAACAATAGCACTCAACC 59.771 50.000 0.00 0.00 0.00 3.77
478 844 4.038642 GCACTCAACCCTCCAACAAAAATA 59.961 41.667 0.00 0.00 0.00 1.40
479 845 5.452636 GCACTCAACCCTCCAACAAAAATAA 60.453 40.000 0.00 0.00 0.00 1.40
485 851 4.173256 CCCTCCAACAAAAATAATCGTGC 58.827 43.478 0.00 0.00 0.00 5.34
486 852 4.321601 CCCTCCAACAAAAATAATCGTGCA 60.322 41.667 0.00 0.00 0.00 4.57
488 854 5.289193 CCTCCAACAAAAATAATCGTGCATG 59.711 40.000 0.00 0.00 0.00 4.06
491 857 5.444877 CCAACAAAAATAATCGTGCATGCAG 60.445 40.000 23.41 15.31 0.00 4.41
494 860 5.345741 ACAAAAATAATCGTGCATGCAGAAC 59.654 36.000 23.41 8.85 0.00 3.01
500 866 3.038788 TCGTGCATGCAGAACTTTCTA 57.961 42.857 23.41 0.00 35.34 2.10
501 867 2.995939 TCGTGCATGCAGAACTTTCTAG 59.004 45.455 23.41 2.79 35.34 2.43
509 875 4.194640 TGCAGAACTTTCTAGATGATGGC 58.805 43.478 0.00 0.00 35.34 4.40
515 881 6.703607 AGAACTTTCTAGATGATGGCAATACG 59.296 38.462 0.00 0.00 35.34 3.06
516 882 5.300752 ACTTTCTAGATGATGGCAATACGG 58.699 41.667 0.00 0.00 0.00 4.02
547 913 3.644823 TGACAAGCATGCAGTGAATTTG 58.355 40.909 21.98 15.52 0.00 2.32
600 966 0.529555 GCTTTGCGCCTGGAAAACAA 60.530 50.000 4.18 0.00 34.84 2.83
632 998 5.448926 AATCTTTTTGCAACGTTTGTGTC 57.551 34.783 0.00 0.00 0.00 3.67
633 999 3.902150 TCTTTTTGCAACGTTTGTGTCA 58.098 36.364 0.00 0.00 0.00 3.58
634 1000 3.670991 TCTTTTTGCAACGTTTGTGTCAC 59.329 39.130 0.00 0.00 0.00 3.67
635 1001 2.706555 TTTGCAACGTTTGTGTCACA 57.293 40.000 0.18 0.18 0.00 3.58
636 1002 1.970447 TTGCAACGTTTGTGTCACAC 58.030 45.000 4.80 0.00 34.56 3.82
637 1003 0.875059 TGCAACGTTTGTGTCACACA 59.125 45.000 6.50 6.50 43.02 3.72
638 1004 1.470494 TGCAACGTTTGTGTCACACAT 59.530 42.857 12.49 0.00 44.16 3.21
639 1005 1.845568 GCAACGTTTGTGTCACACATG 59.154 47.619 12.49 7.81 44.16 3.21
721 1087 2.435938 ACTGGCACGGCAATACGG 60.436 61.111 0.00 0.00 39.14 4.02
769 1135 1.314730 AACGCAAGGTCGAAAATGGT 58.685 45.000 0.00 0.00 46.39 3.55
770 1136 0.872388 ACGCAAGGTCGAAAATGGTC 59.128 50.000 0.00 0.00 46.39 4.02
784 1150 3.790089 AATGGTCTCCTTCCTTTTCGT 57.210 42.857 0.00 0.00 0.00 3.85
789 1155 2.830321 GTCTCCTTCCTTTTCGTAGGGA 59.170 50.000 0.00 0.00 35.90 4.20
798 1164 5.544650 TCCTTTTCGTAGGGAAACAGTAAG 58.455 41.667 0.00 0.00 44.07 2.34
804 1170 5.683681 TCGTAGGGAAACAGTAAGGTTTTT 58.316 37.500 0.00 0.00 40.85 1.94
805 1171 5.759763 TCGTAGGGAAACAGTAAGGTTTTTC 59.240 40.000 0.00 0.00 40.85 2.29
806 1172 5.333568 CGTAGGGAAACAGTAAGGTTTTTCG 60.334 44.000 0.00 0.00 40.85 3.46
807 1173 4.784177 AGGGAAACAGTAAGGTTTTTCGA 58.216 39.130 0.00 0.00 40.85 3.71
885 1254 1.507141 CGGGCTCACGGGCATAAATC 61.507 60.000 0.00 0.00 42.84 2.17
900 1269 0.103572 AAATCCGCAGCCGTACGTAT 59.896 50.000 15.21 0.00 0.00 3.06
1027 1424 2.683933 GCCTCCGTCCTCCTCCAA 60.684 66.667 0.00 0.00 0.00 3.53
1049 1457 6.493166 CAATCCTCCACCTCTATCTCTATCT 58.507 44.000 0.00 0.00 0.00 1.98
1053 1471 4.917385 TCCACCTCTATCTCTATCTCTGC 58.083 47.826 0.00 0.00 0.00 4.26
1109 1531 3.595758 CGGCGGGATTGAATGGGC 61.596 66.667 0.00 0.00 0.00 5.36
1112 1534 2.546494 GCGGGATTGAATGGGCTCG 61.546 63.158 0.00 0.00 0.00 5.03
1113 1535 2.546494 CGGGATTGAATGGGCTCGC 61.546 63.158 0.00 0.00 0.00 5.03
1114 1536 2.196245 GGGATTGAATGGGCTCGCC 61.196 63.158 0.00 0.00 0.00 5.54
1115 1537 2.546494 GGATTGAATGGGCTCGCCG 61.546 63.158 1.24 0.00 36.85 6.46
1116 1538 1.523711 GATTGAATGGGCTCGCCGA 60.524 57.895 1.24 0.00 36.85 5.54
1117 1539 1.776034 GATTGAATGGGCTCGCCGAC 61.776 60.000 1.24 0.00 36.85 4.79
1211 1642 0.320946 CGGTGGCGGGTTTAAGAAGA 60.321 55.000 0.00 0.00 0.00 2.87
1217 1651 1.884928 GCGGGTTTAAGAAGAAGGCCA 60.885 52.381 5.01 0.00 0.00 5.36
1219 1653 2.812613 CGGGTTTAAGAAGAAGGCCACA 60.813 50.000 5.01 0.00 0.00 4.17
1220 1654 2.557056 GGGTTTAAGAAGAAGGCCACAC 59.443 50.000 5.01 0.00 0.00 3.82
1431 1868 4.096003 CCGCCAACCTCGTCCCAT 62.096 66.667 0.00 0.00 0.00 4.00
1447 1884 4.275936 CGTCCCATCCAAGGTAATTGATTC 59.724 45.833 0.00 0.00 41.83 2.52
1449 1886 6.601332 GTCCCATCCAAGGTAATTGATTCTA 58.399 40.000 0.00 0.00 41.83 2.10
1451 1888 5.770162 CCCATCCAAGGTAATTGATTCTACC 59.230 44.000 0.00 0.00 41.83 3.18
1454 1891 5.437060 TCCAAGGTAATTGATTCTACCTGC 58.563 41.667 1.65 0.00 45.86 4.85
1479 1916 8.994170 GCTATACTTCTGAATTTACCTCATTCC 58.006 37.037 0.00 0.00 30.64 3.01
1487 1924 5.945784 TGAATTTACCTCATTCCCACTTCAG 59.054 40.000 0.00 0.00 30.64 3.02
1490 1927 1.276421 ACCTCATTCCCACTTCAGTCG 59.724 52.381 0.00 0.00 0.00 4.18
1540 1989 9.090692 CATTTGTCAAGTTCATTTTCTCAGTTT 57.909 29.630 0.00 0.00 0.00 2.66
1616 2587 3.247648 CACCGAGTGTAAAAGTGTTCCAG 59.752 47.826 0.00 0.00 0.00 3.86
1639 2610 0.107831 TTCAGTCCCAAGTCCCAACG 59.892 55.000 0.00 0.00 0.00 4.10
1745 2760 1.949465 ACCACCTCGTTGTCTGTTTC 58.051 50.000 0.00 0.00 0.00 2.78
1746 2761 1.485066 ACCACCTCGTTGTCTGTTTCT 59.515 47.619 0.00 0.00 0.00 2.52
1766 2781 3.253677 TCTCTGCGGTATTAGCTAGCTTC 59.746 47.826 24.88 11.00 35.28 3.86
1786 2801 6.539103 AGCTTCCGAAAAATAGTTCTATGGAC 59.461 38.462 0.00 0.00 0.00 4.02
1787 2802 6.509677 GCTTCCGAAAAATAGTTCTATGGACG 60.510 42.308 0.00 0.00 0.00 4.79
1788 2803 5.353938 TCCGAAAAATAGTTCTATGGACGG 58.646 41.667 0.00 0.00 37.37 4.79
1789 2804 5.127519 TCCGAAAAATAGTTCTATGGACGGA 59.872 40.000 17.23 17.23 41.49 4.69
1790 2805 5.989777 CCGAAAAATAGTTCTATGGACGGAT 59.010 40.000 15.35 0.00 38.09 4.18
1829 2850 1.198408 GTGGCATGCATATGGACATCG 59.802 52.381 21.36 0.00 34.79 3.84
1914 2935 0.667993 ATTTGTCCGCACACAACCAG 59.332 50.000 0.00 0.00 35.97 4.00
1937 2958 0.469917 CCATTATCCGCCACACCTCT 59.530 55.000 0.00 0.00 0.00 3.69
1964 2985 4.453892 ATTCCTGCCTGCCTGCCC 62.454 66.667 0.00 0.00 0.00 5.36
2016 3037 1.531149 CACCTGTACGGTTTGCTTCAG 59.469 52.381 6.65 0.00 46.37 3.02
2022 3043 5.199024 TGTACGGTTTGCTTCAGTAAGTA 57.801 39.130 0.00 0.00 34.99 2.24
2025 3046 4.056050 ACGGTTTGCTTCAGTAAGTAGTG 58.944 43.478 0.00 0.00 34.99 2.74
2026 3047 3.432252 CGGTTTGCTTCAGTAAGTAGTGG 59.568 47.826 0.00 0.00 34.99 4.00
2027 3048 4.386711 GGTTTGCTTCAGTAAGTAGTGGT 58.613 43.478 0.00 0.00 34.99 4.16
2040 3061 9.351570 CAGTAAGTAGTGGTAACTTAACTAAGC 57.648 37.037 0.00 0.00 40.22 3.09
2041 3062 9.082313 AGTAAGTAGTGGTAACTTAACTAAGCA 57.918 33.333 0.00 0.00 40.22 3.91
2042 3063 9.351570 GTAAGTAGTGGTAACTTAACTAAGCAG 57.648 37.037 0.00 0.00 40.22 4.24
2043 3064 6.396450 AGTAGTGGTAACTTAACTAAGCAGC 58.604 40.000 0.00 0.00 37.88 5.25
2044 3065 4.576879 AGTGGTAACTTAACTAAGCAGCC 58.423 43.478 0.00 0.00 36.79 4.85
2045 3066 4.041198 AGTGGTAACTTAACTAAGCAGCCA 59.959 41.667 0.00 0.69 36.79 4.75
2046 3067 4.153655 GTGGTAACTTAACTAAGCAGCCAC 59.846 45.833 15.10 15.10 40.52 5.01
2047 3068 4.202377 TGGTAACTTAACTAAGCAGCCACA 60.202 41.667 0.00 0.00 36.79 4.17
2048 3069 4.941873 GGTAACTTAACTAAGCAGCCACAT 59.058 41.667 0.00 0.00 36.79 3.21
2049 3070 5.414765 GGTAACTTAACTAAGCAGCCACATT 59.585 40.000 0.00 0.00 36.79 2.71
2050 3071 5.629079 AACTTAACTAAGCAGCCACATTC 57.371 39.130 0.00 0.00 36.79 2.67
2051 3072 4.911390 ACTTAACTAAGCAGCCACATTCT 58.089 39.130 0.00 0.00 36.79 2.40
2052 3073 4.697352 ACTTAACTAAGCAGCCACATTCTG 59.303 41.667 0.00 0.00 36.79 3.02
2053 3074 2.867109 ACTAAGCAGCCACATTCTGT 57.133 45.000 0.00 0.00 34.21 3.41
2054 3075 3.981071 ACTAAGCAGCCACATTCTGTA 57.019 42.857 0.00 0.00 34.21 2.74
2055 3076 4.286297 ACTAAGCAGCCACATTCTGTAA 57.714 40.909 0.00 0.00 34.21 2.41
2056 3077 4.651778 ACTAAGCAGCCACATTCTGTAAA 58.348 39.130 0.00 0.00 34.21 2.01
2057 3078 3.923017 AAGCAGCCACATTCTGTAAAC 57.077 42.857 0.00 0.00 34.21 2.01
2058 3079 3.146104 AGCAGCCACATTCTGTAAACT 57.854 42.857 0.00 0.00 34.21 2.66
2059 3080 2.816087 AGCAGCCACATTCTGTAAACTG 59.184 45.455 0.00 0.00 34.21 3.16
2060 3081 2.669391 GCAGCCACATTCTGTAAACTGC 60.669 50.000 10.56 10.56 40.18 4.40
2061 3082 2.553602 CAGCCACATTCTGTAAACTGCA 59.446 45.455 0.00 0.00 0.00 4.41
2062 3083 3.004629 CAGCCACATTCTGTAAACTGCAA 59.995 43.478 0.00 0.00 0.00 4.08
2063 3084 3.636300 AGCCACATTCTGTAAACTGCAAA 59.364 39.130 0.00 0.00 0.00 3.68
2064 3085 4.281688 AGCCACATTCTGTAAACTGCAAAT 59.718 37.500 0.00 0.00 0.00 2.32
2065 3086 4.990426 GCCACATTCTGTAAACTGCAAATT 59.010 37.500 0.00 0.00 0.00 1.82
2066 3087 5.119125 GCCACATTCTGTAAACTGCAAATTC 59.881 40.000 0.00 0.00 0.00 2.17
2067 3088 5.634859 CCACATTCTGTAAACTGCAAATTCC 59.365 40.000 0.00 0.00 0.00 3.01
2068 3089 6.449698 CACATTCTGTAAACTGCAAATTCCT 58.550 36.000 0.00 0.00 0.00 3.36
2069 3090 6.925165 CACATTCTGTAAACTGCAAATTCCTT 59.075 34.615 0.00 0.00 0.00 3.36
2070 3091 7.115378 CACATTCTGTAAACTGCAAATTCCTTC 59.885 37.037 0.00 0.00 0.00 3.46
2071 3092 6.959639 TTCTGTAAACTGCAAATTCCTTCT 57.040 33.333 0.00 0.00 0.00 2.85
2072 3093 6.560253 TCTGTAAACTGCAAATTCCTTCTC 57.440 37.500 0.00 0.00 0.00 2.87
2073 3094 6.299141 TCTGTAAACTGCAAATTCCTTCTCT 58.701 36.000 0.00 0.00 0.00 3.10
2074 3095 6.772716 TCTGTAAACTGCAAATTCCTTCTCTT 59.227 34.615 0.00 0.00 0.00 2.85
2075 3096 6.970484 TGTAAACTGCAAATTCCTTCTCTTC 58.030 36.000 0.00 0.00 0.00 2.87
2076 3097 6.772716 TGTAAACTGCAAATTCCTTCTCTTCT 59.227 34.615 0.00 0.00 0.00 2.85
2077 3098 5.956068 AACTGCAAATTCCTTCTCTTCTC 57.044 39.130 0.00 0.00 0.00 2.87
2078 3099 5.240013 ACTGCAAATTCCTTCTCTTCTCT 57.760 39.130 0.00 0.00 0.00 3.10
2079 3100 5.002516 ACTGCAAATTCCTTCTCTTCTCTG 58.997 41.667 0.00 0.00 0.00 3.35
2080 3101 5.221803 ACTGCAAATTCCTTCTCTTCTCTGA 60.222 40.000 0.00 0.00 0.00 3.27
2081 3102 5.813383 TGCAAATTCCTTCTCTTCTCTGAT 58.187 37.500 0.00 0.00 0.00 2.90
2082 3103 5.879223 TGCAAATTCCTTCTCTTCTCTGATC 59.121 40.000 0.00 0.00 0.00 2.92
2083 3104 5.879223 GCAAATTCCTTCTCTTCTCTGATCA 59.121 40.000 0.00 0.00 0.00 2.92
2084 3105 6.373774 GCAAATTCCTTCTCTTCTCTGATCAA 59.626 38.462 0.00 0.00 0.00 2.57
2085 3106 7.094463 GCAAATTCCTTCTCTTCTCTGATCAAA 60.094 37.037 0.00 0.00 0.00 2.69
2086 3107 7.920160 AATTCCTTCTCTTCTCTGATCAAAC 57.080 36.000 0.00 0.00 0.00 2.93
2087 3108 6.678568 TTCCTTCTCTTCTCTGATCAAACT 57.321 37.500 0.00 0.00 0.00 2.66
2093 3114 5.478332 TCTCTTCTCTGATCAAACTGCAGTA 59.522 40.000 22.01 4.74 0.00 2.74
2098 3119 7.117285 TCTCTGATCAAACTGCAGTACATAT 57.883 36.000 22.01 11.47 0.00 1.78
2099 3120 6.982724 TCTCTGATCAAACTGCAGTACATATG 59.017 38.462 22.01 13.94 0.00 1.78
2123 3144 8.810652 TGCCATTTCTTCAGTAATTTTGTTAC 57.189 30.769 0.00 0.00 0.00 2.50
2157 3186 4.137116 TCTGTGCTCATACCAACCATAC 57.863 45.455 0.00 0.00 0.00 2.39
2177 3214 3.990092 ACGTAGTTCTGATCACTGCAAA 58.010 40.909 0.00 0.00 37.78 3.68
2193 3230 4.343526 ACTGCAAATGTTGGTTGGTAATCA 59.656 37.500 0.00 0.00 0.00 2.57
2195 3232 3.679502 GCAAATGTTGGTTGGTAATCAGC 59.320 43.478 0.00 0.00 0.00 4.26
2540 3582 7.296512 TCGCAAGGTACAGATGAAATGTTCAT 61.297 38.462 3.17 3.17 45.91 2.57
2552 3594 6.493449 TGAAATGTTCATCAGACGCAATTA 57.507 33.333 0.00 0.00 34.08 1.40
2557 3599 4.627035 TGTTCATCAGACGCAATTACAGAG 59.373 41.667 0.00 0.00 0.00 3.35
2558 3600 3.190079 TCATCAGACGCAATTACAGAGC 58.810 45.455 0.00 0.00 0.00 4.09
2576 3618 5.523916 ACAGAGCGTATAGGTTGCTTAAATG 59.476 40.000 0.00 0.00 39.49 2.32
2581 3623 5.065474 GCGTATAGGTTGCTTAAATGGTTCA 59.935 40.000 0.00 0.00 0.00 3.18
2585 3627 3.577848 AGGTTGCTTAAATGGTTCATGCA 59.422 39.130 0.00 0.00 0.00 3.96
2586 3628 3.928375 GGTTGCTTAAATGGTTCATGCAG 59.072 43.478 0.00 0.00 0.00 4.41
2587 3629 4.559153 GTTGCTTAAATGGTTCATGCAGT 58.441 39.130 0.00 0.00 0.00 4.40
2588 3630 4.177165 TGCTTAAATGGTTCATGCAGTG 57.823 40.909 0.00 0.00 0.00 3.66
2589 3631 2.925563 GCTTAAATGGTTCATGCAGTGC 59.074 45.455 8.58 8.58 0.00 4.40
2590 3632 3.614630 GCTTAAATGGTTCATGCAGTGCA 60.615 43.478 22.22 22.22 44.86 4.57
2591 3633 2.736144 AAATGGTTCATGCAGTGCAG 57.264 45.000 24.20 15.07 43.65 4.41
2592 3634 0.245539 AATGGTTCATGCAGTGCAGC 59.754 50.000 24.20 12.75 43.65 5.25
2593 3635 1.929806 ATGGTTCATGCAGTGCAGCG 61.930 55.000 24.20 16.72 43.65 5.18
2594 3636 2.620112 GGTTCATGCAGTGCAGCGT 61.620 57.895 24.20 3.57 43.65 5.07
2597 3639 3.733960 CATGCAGTGCAGCGTGCT 61.734 61.111 24.20 1.87 45.31 4.40
2598 3640 3.733960 ATGCAGTGCAGCGTGCTG 61.734 61.111 24.20 17.29 45.31 4.41
2601 3643 3.282157 CAGTGCAGCGTGCTGGTT 61.282 61.111 22.22 0.00 45.31 3.67
2602 3644 2.974698 AGTGCAGCGTGCTGGTTC 60.975 61.111 22.22 7.41 45.31 3.62
2603 3645 3.279116 GTGCAGCGTGCTGGTTCA 61.279 61.111 22.22 9.87 45.31 3.18
2604 3646 2.515757 TGCAGCGTGCTGGTTCAA 60.516 55.556 22.22 0.00 45.31 2.69
2605 3647 2.253452 GCAGCGTGCTGGTTCAAG 59.747 61.111 22.22 0.00 43.77 3.02
2606 3648 2.546494 GCAGCGTGCTGGTTCAAGT 61.546 57.895 22.22 0.00 43.77 3.16
2607 3649 1.280746 CAGCGTGCTGGTTCAAGTG 59.719 57.895 14.00 0.00 40.17 3.16
2608 3650 1.893808 AGCGTGCTGGTTCAAGTGG 60.894 57.895 0.00 0.00 0.00 4.00
2609 3651 2.186826 GCGTGCTGGTTCAAGTGGT 61.187 57.895 0.00 0.00 0.00 4.16
2610 3652 1.941812 CGTGCTGGTTCAAGTGGTC 59.058 57.895 0.00 0.00 0.00 4.02
2611 3653 0.813610 CGTGCTGGTTCAAGTGGTCA 60.814 55.000 0.00 0.00 0.00 4.02
2612 3654 1.388547 GTGCTGGTTCAAGTGGTCAA 58.611 50.000 0.00 0.00 0.00 3.18
2613 3655 1.748493 GTGCTGGTTCAAGTGGTCAAA 59.252 47.619 0.00 0.00 0.00 2.69
2614 3656 2.362077 GTGCTGGTTCAAGTGGTCAAAT 59.638 45.455 0.00 0.00 0.00 2.32
2615 3657 3.568007 GTGCTGGTTCAAGTGGTCAAATA 59.432 43.478 0.00 0.00 0.00 1.40
2616 3658 4.218417 GTGCTGGTTCAAGTGGTCAAATAT 59.782 41.667 0.00 0.00 0.00 1.28
2617 3659 5.414454 GTGCTGGTTCAAGTGGTCAAATATA 59.586 40.000 0.00 0.00 0.00 0.86
2618 3660 6.095440 GTGCTGGTTCAAGTGGTCAAATATAT 59.905 38.462 0.00 0.00 0.00 0.86
2619 3661 7.282224 GTGCTGGTTCAAGTGGTCAAATATATA 59.718 37.037 0.00 0.00 0.00 0.86
2620 3662 7.998383 TGCTGGTTCAAGTGGTCAAATATATAT 59.002 33.333 0.00 0.00 0.00 0.86
2621 3663 9.502091 GCTGGTTCAAGTGGTCAAATATATATA 57.498 33.333 0.00 0.00 0.00 0.86
2650 3692 9.739276 TCACTCTGAATTACATTTTCCATAAGT 57.261 29.630 0.00 0.00 0.00 2.24
2654 3696 9.638239 TCTGAATTACATTTTCCATAAGTTTGC 57.362 29.630 0.00 0.00 0.00 3.68
2655 3697 9.643693 CTGAATTACATTTTCCATAAGTTTGCT 57.356 29.630 0.00 0.00 0.00 3.91
2660 3702 9.906660 TTACATTTTCCATAAGTTTGCTAACAG 57.093 29.630 13.46 0.70 36.70 3.16
2661 3703 8.177119 ACATTTTCCATAAGTTTGCTAACAGA 57.823 30.769 13.46 0.90 36.70 3.41
2662 3704 8.637986 ACATTTTCCATAAGTTTGCTAACAGAA 58.362 29.630 13.46 5.39 36.70 3.02
2663 3705 9.132521 CATTTTCCATAAGTTTGCTAACAGAAG 57.867 33.333 13.46 1.03 36.70 2.85
2664 3706 6.817765 TTCCATAAGTTTGCTAACAGAAGG 57.182 37.500 13.46 9.39 36.70 3.46
2665 3707 5.253330 TCCATAAGTTTGCTAACAGAAGGG 58.747 41.667 13.46 8.74 36.70 3.95
2666 3708 5.010282 CCATAAGTTTGCTAACAGAAGGGT 58.990 41.667 13.46 0.00 36.70 4.34
2667 3709 5.476945 CCATAAGTTTGCTAACAGAAGGGTT 59.523 40.000 13.46 0.00 36.70 4.11
2668 3710 6.015434 CCATAAGTTTGCTAACAGAAGGGTTT 60.015 38.462 13.46 0.00 36.70 3.27
2669 3711 5.515797 AAGTTTGCTAACAGAAGGGTTTC 57.484 39.130 13.46 0.00 36.70 2.78
2670 3712 4.793201 AGTTTGCTAACAGAAGGGTTTCT 58.207 39.130 13.46 0.00 44.45 2.52
2671 3713 5.937111 AGTTTGCTAACAGAAGGGTTTCTA 58.063 37.500 13.46 0.00 41.71 2.10
2672 3714 6.543735 AGTTTGCTAACAGAAGGGTTTCTAT 58.456 36.000 13.46 0.00 41.71 1.98
2673 3715 7.004691 AGTTTGCTAACAGAAGGGTTTCTATT 58.995 34.615 13.46 0.00 41.71 1.73
2674 3716 6.817765 TTGCTAACAGAAGGGTTTCTATTG 57.182 37.500 0.00 0.00 41.71 1.90
2675 3717 5.253330 TGCTAACAGAAGGGTTTCTATTGG 58.747 41.667 0.00 0.00 41.71 3.16
2676 3718 5.222048 TGCTAACAGAAGGGTTTCTATTGGT 60.222 40.000 0.00 0.00 41.71 3.67
2677 3719 5.354513 GCTAACAGAAGGGTTTCTATTGGTC 59.645 44.000 0.00 0.00 41.71 4.02
2678 3720 5.584551 AACAGAAGGGTTTCTATTGGTCT 57.415 39.130 0.00 0.00 41.71 3.85
2679 3721 6.697641 AACAGAAGGGTTTCTATTGGTCTA 57.302 37.500 0.00 0.00 41.71 2.59
2680 3722 6.697641 ACAGAAGGGTTTCTATTGGTCTAA 57.302 37.500 0.00 0.00 41.71 2.10
2681 3723 7.272144 ACAGAAGGGTTTCTATTGGTCTAAT 57.728 36.000 0.00 0.00 41.71 1.73
2682 3724 8.388656 ACAGAAGGGTTTCTATTGGTCTAATA 57.611 34.615 0.00 0.00 41.71 0.98
2683 3725 9.004231 ACAGAAGGGTTTCTATTGGTCTAATAT 57.996 33.333 0.00 0.00 41.71 1.28
2710 3752 7.624360 AAGTTTACTCTGAACATTGTGAACA 57.376 32.000 0.00 0.00 33.33 3.18
2711 3753 7.624360 AGTTTACTCTGAACATTGTGAACAA 57.376 32.000 0.00 0.00 40.51 2.83
2712 3754 7.472543 AGTTTACTCTGAACATTGTGAACAAC 58.527 34.615 0.00 0.00 38.86 3.32
2713 3755 6.993786 TTACTCTGAACATTGTGAACAACA 57.006 33.333 0.00 0.00 38.86 3.33
2714 3756 5.490139 ACTCTGAACATTGTGAACAACAG 57.510 39.130 0.00 2.09 40.74 3.16
2715 3757 4.943705 ACTCTGAACATTGTGAACAACAGT 59.056 37.500 0.00 0.00 40.74 3.55
2716 3758 6.112734 ACTCTGAACATTGTGAACAACAGTA 58.887 36.000 0.00 0.00 40.74 2.74
2717 3759 6.258727 ACTCTGAACATTGTGAACAACAGTAG 59.741 38.462 0.00 4.52 40.74 2.57
2718 3760 5.007626 TCTGAACATTGTGAACAACAGTAGC 59.992 40.000 0.00 0.00 40.74 3.58
2719 3761 4.637977 TGAACATTGTGAACAACAGTAGCA 59.362 37.500 0.00 1.35 40.74 3.49
2720 3762 5.124617 TGAACATTGTGAACAACAGTAGCAA 59.875 36.000 0.00 0.00 40.74 3.91
2721 3763 4.920376 ACATTGTGAACAACAGTAGCAAC 58.080 39.130 0.00 0.00 40.74 4.17
2722 3764 4.397730 ACATTGTGAACAACAGTAGCAACA 59.602 37.500 0.00 0.00 40.74 3.33
2723 3765 5.105957 ACATTGTGAACAACAGTAGCAACAA 60.106 36.000 0.00 0.00 40.74 2.83
2724 3766 4.349663 TGTGAACAACAGTAGCAACAAC 57.650 40.909 0.00 0.00 33.78 3.32
2725 3767 3.753797 TGTGAACAACAGTAGCAACAACA 59.246 39.130 0.00 0.00 33.78 3.33
2726 3768 4.216472 TGTGAACAACAGTAGCAACAACAA 59.784 37.500 0.00 0.00 33.78 2.83
2727 3769 4.557301 GTGAACAACAGTAGCAACAACAAC 59.443 41.667 0.00 0.00 0.00 3.32
2728 3770 4.216472 TGAACAACAGTAGCAACAACAACA 59.784 37.500 0.00 0.00 0.00 3.33
2729 3771 4.775058 ACAACAGTAGCAACAACAACAA 57.225 36.364 0.00 0.00 0.00 2.83
2730 3772 4.481463 ACAACAGTAGCAACAACAACAAC 58.519 39.130 0.00 0.00 0.00 3.32
2731 3773 4.217550 ACAACAGTAGCAACAACAACAACT 59.782 37.500 0.00 0.00 0.00 3.16
2732 3774 4.616181 ACAGTAGCAACAACAACAACTC 57.384 40.909 0.00 0.00 0.00 3.01
2733 3775 3.063452 ACAGTAGCAACAACAACAACTCG 59.937 43.478 0.00 0.00 0.00 4.18
2734 3776 3.063452 CAGTAGCAACAACAACAACTCGT 59.937 43.478 0.00 0.00 0.00 4.18
2735 3777 4.269123 CAGTAGCAACAACAACAACTCGTA 59.731 41.667 0.00 0.00 0.00 3.43
2736 3778 4.871557 AGTAGCAACAACAACAACTCGTAA 59.128 37.500 0.00 0.00 0.00 3.18
2737 3779 4.688511 AGCAACAACAACAACTCGTAAA 57.311 36.364 0.00 0.00 0.00 2.01
2738 3780 5.243426 AGCAACAACAACAACTCGTAAAT 57.757 34.783 0.00 0.00 0.00 1.40
2739 3781 5.646606 AGCAACAACAACAACTCGTAAATT 58.353 33.333 0.00 0.00 0.00 1.82
2740 3782 5.741982 AGCAACAACAACAACTCGTAAATTC 59.258 36.000 0.00 0.00 0.00 2.17
2741 3783 5.741982 GCAACAACAACAACTCGTAAATTCT 59.258 36.000 0.00 0.00 0.00 2.40
2742 3784 6.252655 GCAACAACAACAACTCGTAAATTCTT 59.747 34.615 0.00 0.00 0.00 2.52
2743 3785 7.429920 GCAACAACAACAACTCGTAAATTCTTA 59.570 33.333 0.00 0.00 0.00 2.10
2744 3786 9.279904 CAACAACAACAACTCGTAAATTCTTAA 57.720 29.630 0.00 0.00 0.00 1.85
2745 3787 9.843334 AACAACAACAACTCGTAAATTCTTAAA 57.157 25.926 0.00 0.00 0.00 1.52
2746 3788 9.843334 ACAACAACAACTCGTAAATTCTTAAAA 57.157 25.926 0.00 0.00 0.00 1.52
2813 3855 1.682854 GAGGAGACTGATCAGAGCAGG 59.317 57.143 29.27 2.51 44.43 4.85
2843 3885 3.997021 GCCACTCTTTCGAAAATCTCAGA 59.003 43.478 12.41 3.48 0.00 3.27
2846 3888 4.390297 CACTCTTTCGAAAATCTCAGACCC 59.610 45.833 12.41 0.00 0.00 4.46
2849 3891 1.952621 TCGAAAATCTCAGACCCCCT 58.047 50.000 0.00 0.00 0.00 4.79
2894 3936 0.868406 CAAACAAGCTGTCGGAGGAC 59.132 55.000 0.00 0.00 43.71 3.85
2939 3981 2.031516 CCACAAGCTGAGCAGGACG 61.032 63.158 7.39 0.00 0.00 4.79
2965 4007 3.382803 ATGCAGACTCGGAGCTGGC 62.383 63.158 22.18 15.89 32.83 4.85
3183 4228 4.831307 CCCGGAGCTCGTTCGACG 62.831 72.222 0.73 4.17 44.19 5.12
3240 4285 1.967066 ACTTGAGGTCAGAGTGTGAGG 59.033 52.381 0.00 0.00 35.13 3.86
3272 4321 0.904865 TCATTGCCAGAGGACGGACT 60.905 55.000 0.00 0.00 0.00 3.85
3273 4322 0.460987 CATTGCCAGAGGACGGACTC 60.461 60.000 0.83 0.83 37.77 3.36
3290 4339 5.920273 ACGGACTCATTTTAATTTGTTGCAG 59.080 36.000 0.00 0.00 0.00 4.41
3434 4491 4.092237 CGTGATGCATGTACGGTTTTAAGA 59.908 41.667 19.88 0.00 34.43 2.10
3445 4502 7.324935 TGTACGGTTTTAAGATGAGCTGATTA 58.675 34.615 0.00 0.00 0.00 1.75
3450 4507 7.464710 CGGTTTTAAGATGAGCTGATTACTGAC 60.465 40.741 0.00 0.00 0.00 3.51
3451 4508 7.550906 GGTTTTAAGATGAGCTGATTACTGACT 59.449 37.037 0.00 0.00 0.00 3.41
3515 4572 9.836076 CAACTTTGCATCATATATAACCTGATG 57.164 33.333 15.86 15.86 45.77 3.07
3516 4573 9.797642 AACTTTGCATCATATATAACCTGATGA 57.202 29.630 21.26 7.33 45.84 2.92
3517 4574 9.970553 ACTTTGCATCATATATAACCTGATGAT 57.029 29.630 21.26 9.00 45.84 2.45
3546 4603 7.764901 AGATAACCCGAGAAGAAATTAACTGTC 59.235 37.037 0.00 0.00 0.00 3.51
3555 4612 9.248291 GAGAAGAAATTAACTGTCAATTTTGCA 57.752 29.630 3.30 0.00 36.09 4.08
3568 4625 9.749490 CTGTCAATTTTGCAATGTTATCAAATC 57.251 29.630 0.00 0.00 30.89 2.17
3663 4720 0.253160 ATGTGGGAGGAAGGGTGCTA 60.253 55.000 0.00 0.00 0.00 3.49
3736 4793 5.154222 GCAACAAGCAGGTAACAAATCTAC 58.846 41.667 0.00 0.00 44.79 2.59
3766 4823 5.818136 ATTCCACATCAATCTTGTAACCG 57.182 39.130 0.00 0.00 0.00 4.44
3882 4940 0.399833 GATGATGGAGGAAGGGGAGC 59.600 60.000 0.00 0.00 0.00 4.70
3887 4945 2.446802 GAGGAAGGGGAGCGGGAT 60.447 66.667 0.00 0.00 0.00 3.85
3891 4949 1.679898 GAAGGGGAGCGGGATATGG 59.320 63.158 0.00 0.00 0.00 2.74
4035 5093 0.567968 CTTGACATGATCGACGACGC 59.432 55.000 0.00 0.00 39.58 5.19
4307 5371 0.984961 TCAAGAGGGCCATCAGGGAG 60.985 60.000 21.34 4.26 40.01 4.30
4310 5374 1.460305 GAGGGCCATCAGGGAGCTA 60.460 63.158 13.69 0.00 40.01 3.32
4428 5492 0.664761 TATACTGCGGTGCCGAGTAC 59.335 55.000 15.45 0.00 42.83 2.73
4432 5496 0.595053 CTGCGGTGCCGAGTACATAG 60.595 60.000 15.45 0.00 42.83 2.23
4433 5497 1.317431 TGCGGTGCCGAGTACATAGT 61.317 55.000 15.45 0.00 42.83 2.12
4434 5498 0.870307 GCGGTGCCGAGTACATAGTG 60.870 60.000 15.45 0.00 42.83 2.74
4462 5526 8.935614 AGTACGGATTAGGCTGCATATATATA 57.064 34.615 0.50 0.00 0.00 0.86
4463 5527 9.535170 AGTACGGATTAGGCTGCATATATATAT 57.465 33.333 0.50 0.00 0.00 0.86
4468 5532 7.335422 GGATTAGGCTGCATATATATATGGTGC 59.665 40.741 26.68 18.17 40.31 5.01
4508 5574 1.213094 ACGTGTTGCTGCGTACAGTC 61.213 55.000 7.53 0.00 46.30 3.51
4587 5691 6.592870 AGATGCATGAAGAGATCAGATGAAA 58.407 36.000 2.46 0.00 42.53 2.69
4603 5707 6.150976 TCAGATGAAAATAAATGGACGTTGCT 59.849 34.615 0.00 0.00 0.00 3.91
4604 5708 7.335673 TCAGATGAAAATAAATGGACGTTGCTA 59.664 33.333 0.00 0.00 0.00 3.49
4605 5709 7.641411 CAGATGAAAATAAATGGACGTTGCTAG 59.359 37.037 0.00 0.00 0.00 3.42
4606 5710 5.636837 TGAAAATAAATGGACGTTGCTAGC 58.363 37.500 8.10 8.10 0.00 3.42
4607 5711 3.944422 AATAAATGGACGTTGCTAGCG 57.056 42.857 10.77 0.00 0.00 4.26
4608 5712 2.658373 TAAATGGACGTTGCTAGCGA 57.342 45.000 10.77 5.12 0.00 4.93
4609 5713 1.359848 AAATGGACGTTGCTAGCGAG 58.640 50.000 10.77 6.30 0.00 5.03
4626 5730 2.174349 GCTTCCGAGCGCTTGTTG 59.826 61.111 22.94 13.03 39.48 3.33
4627 5731 2.317609 GCTTCCGAGCGCTTGTTGA 61.318 57.895 22.94 11.42 39.48 3.18
4628 5732 1.639298 GCTTCCGAGCGCTTGTTGAT 61.639 55.000 22.94 0.00 39.48 2.57
4629 5733 0.095935 CTTCCGAGCGCTTGTTGATG 59.904 55.000 22.94 12.04 0.00 3.07
4630 5734 1.298157 TTCCGAGCGCTTGTTGATGG 61.298 55.000 22.94 10.96 0.00 3.51
4631 5735 2.099062 CGAGCGCTTGTTGATGGC 59.901 61.111 13.26 0.00 0.00 4.40
4637 5741 3.806257 GCTTGTTGATGGCGATACG 57.194 52.632 0.00 0.00 0.00 3.06
4638 5742 0.304705 GCTTGTTGATGGCGATACGG 59.695 55.000 0.00 0.00 0.00 4.02
4639 5743 1.651987 CTTGTTGATGGCGATACGGT 58.348 50.000 0.00 0.00 0.00 4.83
4640 5744 1.327460 CTTGTTGATGGCGATACGGTG 59.673 52.381 0.00 0.00 0.00 4.94
4641 5745 0.533032 TGTTGATGGCGATACGGTGA 59.467 50.000 0.00 0.00 0.00 4.02
4642 5746 1.066787 TGTTGATGGCGATACGGTGAA 60.067 47.619 0.00 0.00 0.00 3.18
4643 5747 1.593006 GTTGATGGCGATACGGTGAAG 59.407 52.381 0.00 0.00 0.00 3.02
4644 5748 1.107945 TGATGGCGATACGGTGAAGA 58.892 50.000 0.00 0.00 0.00 2.87
4645 5749 1.067060 TGATGGCGATACGGTGAAGAG 59.933 52.381 0.00 0.00 0.00 2.85
4656 5760 1.205655 CGGTGAAGAGGATTGCAGAGA 59.794 52.381 0.00 0.00 0.00 3.10
4695 5799 6.353323 TCAAACAAAAGAGGATGTACTGTGA 58.647 36.000 0.00 0.00 0.00 3.58
4707 5811 8.083828 AGGATGTACTGTGACATTCTAGAAAT 57.916 34.615 9.71 0.33 42.80 2.17
4711 5815 8.122472 TGTACTGTGACATTCTAGAAATCAGA 57.878 34.615 18.42 16.70 0.00 3.27
4766 5871 6.097270 CCATTTCATGGTAGTGATTGGACAAT 59.903 38.462 0.00 0.00 45.54 2.71
4801 5906 2.861935 CACAAAAAGTTTGCTGCTGAGG 59.138 45.455 0.00 0.00 0.00 3.86
4869 5983 1.009389 GCCACGAGAGCGCCATATAC 61.009 60.000 2.29 0.00 42.48 1.47
4893 6010 0.538516 TGTGGCCCGTGCTTGTTATT 60.539 50.000 0.00 0.00 37.74 1.40
4906 6023 6.348132 CGTGCTTGTTATTCCTTACAACATGA 60.348 38.462 0.00 0.00 32.57 3.07
4915 6032 9.521841 TTATTCCTTACAACATGACACCAAATA 57.478 29.630 0.00 0.00 0.00 1.40
4927 6044 4.586421 TGACACCAAATATCTGCACCAAAA 59.414 37.500 0.00 0.00 0.00 2.44
4978 6104 9.020731 GTCCAAAAAGTCCTGATAAGGATTTTA 57.979 33.333 17.74 2.33 43.89 1.52
5002 6128 7.707624 AATTTATTCATGGAGCTTCTTGTGA 57.292 32.000 7.72 0.05 0.00 3.58
5049 6219 2.046507 CTCAGCAGTCCACCAGCC 60.047 66.667 0.00 0.00 0.00 4.85
5091 6261 9.450807 GTTGTTATAATTTAGTGCATCCATGAC 57.549 33.333 0.00 0.00 0.00 3.06
5103 6273 4.102996 TGCATCCATGACTATCTGGCTTTA 59.897 41.667 0.00 0.00 32.30 1.85
5105 6275 5.512060 GCATCCATGACTATCTGGCTTTAGA 60.512 44.000 0.00 0.00 32.30 2.10
5176 6346 6.764379 TGTGACAAGAATCCACTGTTATACA 58.236 36.000 0.00 0.00 0.00 2.29
5182 6352 9.905713 ACAAGAATCCACTGTTATACACAATAT 57.094 29.630 0.00 0.00 33.87 1.28
5218 6388 1.238439 CATTGGACACCGCTGTTTCT 58.762 50.000 0.00 0.00 0.00 2.52
5229 6399 1.270550 CGCTGTTTCTTTGCCAAGGAT 59.729 47.619 0.00 0.00 0.00 3.24
5271 6441 3.312421 ACCGAAGACTTGTGTTCAATGTG 59.688 43.478 10.48 0.00 32.82 3.21
5326 6498 2.133195 AACGGTGAGTTGCAGGAGA 58.867 52.632 0.00 0.00 42.39 3.71
5329 6501 1.151668 CGGTGAGTTGCAGGAGAAAG 58.848 55.000 0.00 0.00 0.00 2.62
5334 6506 4.319177 GTGAGTTGCAGGAGAAAGTACAT 58.681 43.478 0.00 0.00 0.00 2.29
5337 6509 6.595716 GTGAGTTGCAGGAGAAAGTACATAAT 59.404 38.462 0.00 0.00 0.00 1.28
5463 6637 6.607198 TGGGATTTGGAGTATTGGAAAGATTC 59.393 38.462 0.00 0.00 0.00 2.52
5542 6717 6.604735 ATTATCGGCACACTTCTTAACATC 57.395 37.500 0.00 0.00 0.00 3.06
5562 6737 6.294473 ACATCGAAGGCAAGATGAAAGATAT 58.706 36.000 18.87 0.00 45.08 1.63
5601 6776 3.866703 TTTGACACACCTGGGTATCAA 57.133 42.857 0.00 1.87 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.469940 CCGGTCCTTCATGAGAGAACG 60.470 57.143 21.32 21.32 36.29 3.95
2 3 1.195115 CCCGGTCCTTCATGAGAGAA 58.805 55.000 0.00 0.00 0.00 2.87
4 5 0.905357 AACCCGGTCCTTCATGAGAG 59.095 55.000 0.00 0.00 0.00 3.20
5 6 2.241281 TAACCCGGTCCTTCATGAGA 57.759 50.000 0.00 0.00 0.00 3.27
6 7 3.560636 AATAACCCGGTCCTTCATGAG 57.439 47.619 0.00 0.00 0.00 2.90
7 8 4.472108 AGTTAATAACCCGGTCCTTCATGA 59.528 41.667 0.00 0.00 0.00 3.07
95 459 4.386867 TCCGTGTAAAGATCCTTAGCAG 57.613 45.455 0.00 0.00 0.00 4.24
103 467 4.265556 CGTGAACTGATCCGTGTAAAGATC 59.734 45.833 0.00 0.00 39.50 2.75
112 476 1.066858 AGATTGCGTGAACTGATCCGT 60.067 47.619 0.00 0.00 0.00 4.69
113 477 1.590238 GAGATTGCGTGAACTGATCCG 59.410 52.381 0.00 0.00 0.00 4.18
115 479 2.263077 ACGAGATTGCGTGAACTGATC 58.737 47.619 0.00 0.00 43.79 2.92
132 496 3.316308 GGGGCTAAGATCTACGTTTACGA 59.684 47.826 9.53 0.00 43.02 3.43
134 498 4.340381 TCTGGGGCTAAGATCTACGTTTAC 59.660 45.833 0.00 0.00 0.00 2.01
135 499 4.539726 TCTGGGGCTAAGATCTACGTTTA 58.460 43.478 0.00 0.00 0.00 2.01
140 504 4.262678 GGTCAATCTGGGGCTAAGATCTAC 60.263 50.000 0.00 5.15 33.17 2.59
247 611 0.691078 TGGTATCAGAGCCTCCACCC 60.691 60.000 0.00 0.00 0.00 4.61
248 612 1.071385 CATGGTATCAGAGCCTCCACC 59.929 57.143 0.00 0.00 0.00 4.61
249 613 1.542108 GCATGGTATCAGAGCCTCCAC 60.542 57.143 0.00 0.00 0.00 4.02
250 614 0.761187 GCATGGTATCAGAGCCTCCA 59.239 55.000 0.00 0.00 0.00 3.86
251 615 1.055040 AGCATGGTATCAGAGCCTCC 58.945 55.000 0.00 0.00 0.00 4.30
252 616 1.690893 TCAGCATGGTATCAGAGCCTC 59.309 52.381 0.00 0.00 36.16 4.70
253 617 1.798626 TCAGCATGGTATCAGAGCCT 58.201 50.000 0.00 0.00 36.16 4.58
254 618 2.812591 CAATCAGCATGGTATCAGAGCC 59.187 50.000 0.00 0.00 36.16 4.70
255 619 3.736720 TCAATCAGCATGGTATCAGAGC 58.263 45.455 0.00 0.00 36.16 4.09
256 620 4.958509 ACTCAATCAGCATGGTATCAGAG 58.041 43.478 0.00 6.11 36.16 3.35
257 621 5.510349 GCTACTCAATCAGCATGGTATCAGA 60.510 44.000 0.00 0.00 37.73 3.27
258 622 4.689812 GCTACTCAATCAGCATGGTATCAG 59.310 45.833 0.00 0.00 37.73 2.90
289 653 4.361451 AGTTGCGCTCAAGAAATTATGG 57.639 40.909 9.73 0.00 31.93 2.74
292 656 4.000325 TGCTAGTTGCGCTCAAGAAATTA 59.000 39.130 9.73 0.00 46.63 1.40
370 734 3.030291 TGTGTGCACCCAGAAAGAAAAT 58.970 40.909 15.69 0.00 0.00 1.82
372 736 2.136298 TGTGTGCACCCAGAAAGAAA 57.864 45.000 15.69 0.00 0.00 2.52
375 739 1.102154 TGTTGTGTGCACCCAGAAAG 58.898 50.000 15.69 0.00 0.00 2.62
382 746 2.095263 GTGGATGTATGTTGTGTGCACC 60.095 50.000 15.69 6.37 0.00 5.01
383 747 2.551887 TGTGGATGTATGTTGTGTGCAC 59.448 45.455 10.75 10.75 0.00 4.57
391 755 3.825585 TGTGCATGTTGTGGATGTATGTT 59.174 39.130 0.00 0.00 0.00 2.71
405 769 6.579666 ATGTAGAACAAAGAATGTGCATGT 57.420 33.333 0.00 0.00 42.99 3.21
406 770 7.878477 AAATGTAGAACAAAGAATGTGCATG 57.122 32.000 0.00 0.00 42.99 4.06
407 771 9.630098 CTAAAATGTAGAACAAAGAATGTGCAT 57.370 29.630 0.00 0.00 42.99 3.96
408 772 7.594758 GCTAAAATGTAGAACAAAGAATGTGCA 59.405 33.333 0.00 0.00 42.99 4.57
409 773 7.062255 GGCTAAAATGTAGAACAAAGAATGTGC 59.938 37.037 0.00 0.00 42.99 4.57
410 774 7.542130 GGGCTAAAATGTAGAACAAAGAATGTG 59.458 37.037 0.00 0.00 42.99 3.21
411 775 7.451566 AGGGCTAAAATGTAGAACAAAGAATGT 59.548 33.333 0.00 0.00 46.82 2.71
412 776 7.830739 AGGGCTAAAATGTAGAACAAAGAATG 58.169 34.615 0.00 0.00 0.00 2.67
413 777 8.422577 AAGGGCTAAAATGTAGAACAAAGAAT 57.577 30.769 0.00 0.00 0.00 2.40
414 778 7.833285 AAGGGCTAAAATGTAGAACAAAGAA 57.167 32.000 0.00 0.00 0.00 2.52
418 782 6.431852 GTGGTAAGGGCTAAAATGTAGAACAA 59.568 38.462 0.00 0.00 0.00 2.83
423 787 4.638865 GGTGTGGTAAGGGCTAAAATGTAG 59.361 45.833 0.00 0.00 0.00 2.74
440 804 1.812571 GAGTGCTATTGTTGGGTGTGG 59.187 52.381 0.00 0.00 0.00 4.17
441 805 2.503331 TGAGTGCTATTGTTGGGTGTG 58.497 47.619 0.00 0.00 0.00 3.82
447 813 2.749621 GGAGGGTTGAGTGCTATTGTTG 59.250 50.000 0.00 0.00 0.00 3.33
454 820 0.550914 TTGTTGGAGGGTTGAGTGCT 59.449 50.000 0.00 0.00 0.00 4.40
455 821 1.398692 TTTGTTGGAGGGTTGAGTGC 58.601 50.000 0.00 0.00 0.00 4.40
464 830 4.804108 TGCACGATTATTTTTGTTGGAGG 58.196 39.130 0.00 0.00 0.00 4.30
478 844 2.816087 AGAAAGTTCTGCATGCACGATT 59.184 40.909 18.46 9.76 35.89 3.34
479 845 2.430465 AGAAAGTTCTGCATGCACGAT 58.570 42.857 18.46 3.65 35.89 3.73
485 851 5.277876 GCCATCATCTAGAAAGTTCTGCATG 60.278 44.000 0.00 5.93 38.19 4.06
486 852 4.820716 GCCATCATCTAGAAAGTTCTGCAT 59.179 41.667 0.00 0.00 38.19 3.96
488 854 4.194640 TGCCATCATCTAGAAAGTTCTGC 58.805 43.478 0.00 0.00 38.19 4.26
491 857 6.073548 CCGTATTGCCATCATCTAGAAAGTTC 60.074 42.308 0.00 0.00 0.00 3.01
494 860 5.406780 GTCCGTATTGCCATCATCTAGAAAG 59.593 44.000 0.00 0.00 0.00 2.62
500 866 1.873903 GCGTCCGTATTGCCATCATCT 60.874 52.381 0.00 0.00 0.00 2.90
501 867 0.512952 GCGTCCGTATTGCCATCATC 59.487 55.000 0.00 0.00 0.00 2.92
509 875 0.179137 TCAGCTCAGCGTCCGTATTG 60.179 55.000 0.00 0.00 0.00 1.90
515 881 2.386660 GCTTGTCAGCTCAGCGTCC 61.387 63.158 0.00 0.00 43.51 4.79
516 882 3.163655 GCTTGTCAGCTCAGCGTC 58.836 61.111 0.00 0.00 43.51 5.19
535 901 4.180057 GTGTCCAAAACAAATTCACTGCA 58.820 39.130 0.00 0.00 40.31 4.41
536 902 4.180057 TGTGTCCAAAACAAATTCACTGC 58.820 39.130 0.00 0.00 40.31 4.40
600 966 7.980062 ACGTTGCAAAAAGATTTACCATTTTT 58.020 26.923 0.00 0.00 36.76 1.94
605 971 5.869888 ACAAACGTTGCAAAAAGATTTACCA 59.130 32.000 0.00 0.00 0.00 3.25
615 981 2.726760 GTGTGACACAAACGTTGCAAAA 59.273 40.909 10.50 0.00 34.08 2.44
618 984 0.875059 TGTGTGACACAAACGTTGCA 59.125 45.000 17.13 0.00 41.69 4.08
632 998 8.489559 CAAATATTTTGGTGTTTCTCATGTGTG 58.510 33.333 0.00 0.00 0.00 3.82
633 999 7.171337 GCAAATATTTTGGTGTTTCTCATGTGT 59.829 33.333 0.00 0.00 0.00 3.72
634 1000 7.171167 TGCAAATATTTTGGTGTTTCTCATGTG 59.829 33.333 0.00 0.00 0.00 3.21
635 1001 7.171337 GTGCAAATATTTTGGTGTTTCTCATGT 59.829 33.333 0.00 0.00 0.00 3.21
636 1002 7.512297 GTGCAAATATTTTGGTGTTTCTCATG 58.488 34.615 0.00 0.00 0.00 3.07
637 1003 6.365789 CGTGCAAATATTTTGGTGTTTCTCAT 59.634 34.615 0.00 0.00 0.00 2.90
638 1004 5.689514 CGTGCAAATATTTTGGTGTTTCTCA 59.310 36.000 0.00 0.00 0.00 3.27
639 1005 5.118510 CCGTGCAAATATTTTGGTGTTTCTC 59.881 40.000 0.00 0.00 0.00 2.87
700 1066 1.376683 TATTGCCGTGCCAGTGGAC 60.377 57.895 15.20 7.51 0.00 4.02
704 1070 2.435938 CCGTATTGCCGTGCCAGT 60.436 61.111 0.00 0.00 0.00 4.00
721 1087 1.566563 CACTGTGCAGCTCAACGTC 59.433 57.895 0.00 0.00 0.00 4.34
769 1135 3.179902 TCCCTACGAAAAGGAAGGAGA 57.820 47.619 0.00 0.00 39.15 3.71
770 1136 3.975168 TTCCCTACGAAAAGGAAGGAG 57.025 47.619 0.00 0.00 39.15 3.69
784 1150 5.759763 GTCGAAAAACCTTACTGTTTCCCTA 59.240 40.000 0.00 0.00 37.46 3.53
789 1155 4.271776 CCGAGTCGAAAAACCTTACTGTTT 59.728 41.667 15.64 0.00 40.05 2.83
798 1164 1.600485 TCTTTGCCGAGTCGAAAAACC 59.400 47.619 15.64 0.00 0.00 3.27
804 1170 2.519377 TTCTTTCTTTGCCGAGTCGA 57.481 45.000 15.64 0.00 0.00 4.20
805 1171 3.545633 CTTTTCTTTCTTTGCCGAGTCG 58.454 45.455 5.29 5.29 0.00 4.18
806 1172 3.003793 AGCTTTTCTTTCTTTGCCGAGTC 59.996 43.478 0.00 0.00 0.00 3.36
807 1173 2.952310 AGCTTTTCTTTCTTTGCCGAGT 59.048 40.909 0.00 0.00 0.00 4.18
885 1254 3.327754 GCATACGTACGGCTGCGG 61.328 66.667 22.68 5.60 0.00 5.69
1027 1424 6.038609 AGAGATAGAGATAGAGGTGGAGGAT 58.961 44.000 0.00 0.00 0.00 3.24
1049 1457 2.757508 CGGAGAGGGAGCAGCAGA 60.758 66.667 0.00 0.00 0.00 4.26
1088 1506 4.483243 ATTCAATCCCGCCGCCGT 62.483 61.111 0.00 0.00 0.00 5.68
1089 1507 3.952675 CATTCAATCCCGCCGCCG 61.953 66.667 0.00 0.00 0.00 6.46
1091 1509 3.595758 CCCATTCAATCCCGCCGC 61.596 66.667 0.00 0.00 0.00 6.53
1092 1510 3.595758 GCCCATTCAATCCCGCCG 61.596 66.667 0.00 0.00 0.00 6.46
1093 1511 2.123726 AGCCCATTCAATCCCGCC 60.124 61.111 0.00 0.00 0.00 6.13
1095 1513 2.546494 GCGAGCCCATTCAATCCCG 61.546 63.158 0.00 0.00 0.00 5.14
1096 1514 2.196245 GGCGAGCCCATTCAATCCC 61.196 63.158 1.97 0.00 0.00 3.85
1097 1515 2.546494 CGGCGAGCCCATTCAATCC 61.546 63.158 0.00 0.00 0.00 3.01
1217 1651 1.002134 CTTCATCTTGCCCCGGTGT 60.002 57.895 0.00 0.00 0.00 4.16
1219 1653 2.044946 GCTTCATCTTGCCCCGGT 60.045 61.111 0.00 0.00 0.00 5.28
1220 1654 1.821332 GAGCTTCATCTTGCCCCGG 60.821 63.158 0.00 0.00 0.00 5.73
1419 1856 1.991230 CCTTGGATGGGACGAGGTT 59.009 57.895 0.00 0.00 35.21 3.50
1431 1868 5.191722 AGCAGGTAGAATCAATTACCTTGGA 59.808 40.000 0.59 0.00 45.69 3.53
1447 1884 8.643324 AGGTAAATTCAGAAGTATAGCAGGTAG 58.357 37.037 0.00 0.00 0.00 3.18
1449 1886 7.125811 TGAGGTAAATTCAGAAGTATAGCAGGT 59.874 37.037 0.00 0.00 0.00 4.00
1451 1888 9.553064 AATGAGGTAAATTCAGAAGTATAGCAG 57.447 33.333 0.00 0.00 0.00 4.24
1454 1891 9.495572 GGGAATGAGGTAAATTCAGAAGTATAG 57.504 37.037 0.00 0.00 36.03 1.31
1479 1916 0.321671 ACATGGGACGACTGAAGTGG 59.678 55.000 0.00 0.00 0.00 4.00
1487 1924 3.376859 TGCAATCAATTACATGGGACGAC 59.623 43.478 0.00 0.00 0.00 4.34
1490 1927 4.717233 TGTGCAATCAATTACATGGGAC 57.283 40.909 0.00 0.00 0.00 4.46
1546 1995 3.940209 TTGCCAAAAGCCAGTAATCTG 57.060 42.857 0.00 0.00 42.71 2.90
1574 2023 2.099592 TGACAGAAAAAGTGGCAGCTTG 59.900 45.455 0.00 0.00 0.00 4.01
1616 2587 1.351017 TGGGACTTGGGACTGAATGTC 59.649 52.381 0.00 0.00 44.63 3.06
1626 2597 3.835790 TTCGGCGTTGGGACTTGGG 62.836 63.158 6.85 0.00 0.00 4.12
1627 2598 2.281208 TTCGGCGTTGGGACTTGG 60.281 61.111 6.85 0.00 0.00 3.61
1628 2599 1.597027 AGTTCGGCGTTGGGACTTG 60.597 57.895 6.85 0.00 0.00 3.16
1629 2600 1.597027 CAGTTCGGCGTTGGGACTT 60.597 57.895 6.85 0.00 0.00 3.01
1630 2601 1.466025 TACAGTTCGGCGTTGGGACT 61.466 55.000 6.85 1.91 0.00 3.85
1631 2602 1.005867 TACAGTTCGGCGTTGGGAC 60.006 57.895 6.85 0.00 0.00 4.46
1632 2603 1.180456 TCTACAGTTCGGCGTTGGGA 61.180 55.000 6.85 5.01 0.00 4.37
1639 2610 3.186613 CCTTCAAGTTTCTACAGTTCGGC 59.813 47.826 0.00 0.00 0.00 5.54
1707 2722 3.070590 TGGTAGCAGAGACATGATCATGG 59.929 47.826 33.31 19.27 42.91 3.66
1745 2760 3.570559 GAAGCTAGCTAATACCGCAGAG 58.429 50.000 19.70 0.00 0.00 3.35
1746 2761 2.296471 GGAAGCTAGCTAATACCGCAGA 59.704 50.000 19.70 0.00 0.00 4.26
1766 2781 5.353938 TCCGTCCATAGAACTATTTTTCGG 58.646 41.667 13.03 13.03 35.35 4.30
1786 2801 1.284982 GCATTCATCCGTCCGATCCG 61.285 60.000 0.00 0.00 0.00 4.18
1787 2802 0.034059 AGCATTCATCCGTCCGATCC 59.966 55.000 0.00 0.00 0.00 3.36
1788 2803 1.143305 CAGCATTCATCCGTCCGATC 58.857 55.000 0.00 0.00 0.00 3.69
1789 2804 0.465705 ACAGCATTCATCCGTCCGAT 59.534 50.000 0.00 0.00 0.00 4.18
1790 2805 0.460109 CACAGCATTCATCCGTCCGA 60.460 55.000 0.00 0.00 0.00 4.55
1817 2832 2.997485 TCGAGCTCGATGTCCATATG 57.003 50.000 33.84 2.43 44.22 1.78
1829 2850 0.170116 CTGTGACTCCTGTCGAGCTC 59.830 60.000 2.73 2.73 45.70 4.09
1908 2929 0.823356 CGGATAATGGGGGCTGGTTG 60.823 60.000 0.00 0.00 0.00 3.77
1914 2935 2.597510 GTGGCGGATAATGGGGGC 60.598 66.667 0.00 0.00 0.00 5.80
1937 2958 1.839994 CAGGCAGGAATCCTAGGACAA 59.160 52.381 15.42 0.00 31.52 3.18
1964 2985 0.242825 TTGTCAGGTACGAGAAGGCG 59.757 55.000 0.00 0.00 37.29 5.52
2016 3037 9.351570 CTGCTTAGTTAAGTTACCACTACTTAC 57.648 37.037 0.00 0.00 37.70 2.34
2022 3043 4.041198 TGGCTGCTTAGTTAAGTTACCACT 59.959 41.667 0.00 0.00 35.75 4.00
2025 3046 4.320870 TGTGGCTGCTTAGTTAAGTTACC 58.679 43.478 0.00 1.49 35.75 2.85
2026 3047 6.371825 AGAATGTGGCTGCTTAGTTAAGTTAC 59.628 38.462 0.00 0.00 35.75 2.50
2027 3048 6.371548 CAGAATGTGGCTGCTTAGTTAAGTTA 59.628 38.462 0.00 0.00 35.75 2.24
2046 3067 7.373493 AGAAGGAATTTGCAGTTTACAGAATG 58.627 34.615 0.00 0.00 46.00 2.67
2047 3068 7.449704 AGAGAAGGAATTTGCAGTTTACAGAAT 59.550 33.333 0.00 0.00 0.00 2.40
2048 3069 6.772716 AGAGAAGGAATTTGCAGTTTACAGAA 59.227 34.615 0.00 0.00 0.00 3.02
2049 3070 6.299141 AGAGAAGGAATTTGCAGTTTACAGA 58.701 36.000 0.00 0.00 0.00 3.41
2050 3071 6.566197 AGAGAAGGAATTTGCAGTTTACAG 57.434 37.500 0.00 0.00 0.00 2.74
2051 3072 6.772716 AGAAGAGAAGGAATTTGCAGTTTACA 59.227 34.615 0.00 0.00 0.00 2.41
2052 3073 7.174080 AGAGAAGAGAAGGAATTTGCAGTTTAC 59.826 37.037 0.00 0.00 0.00 2.01
2053 3074 7.173907 CAGAGAAGAGAAGGAATTTGCAGTTTA 59.826 37.037 0.00 0.00 0.00 2.01
2054 3075 6.016443 CAGAGAAGAGAAGGAATTTGCAGTTT 60.016 38.462 0.00 0.00 0.00 2.66
2055 3076 5.472820 CAGAGAAGAGAAGGAATTTGCAGTT 59.527 40.000 0.00 0.00 0.00 3.16
2056 3077 5.002516 CAGAGAAGAGAAGGAATTTGCAGT 58.997 41.667 0.00 0.00 0.00 4.40
2057 3078 5.243981 TCAGAGAAGAGAAGGAATTTGCAG 58.756 41.667 0.00 0.00 0.00 4.41
2058 3079 5.233083 TCAGAGAAGAGAAGGAATTTGCA 57.767 39.130 0.00 0.00 0.00 4.08
2059 3080 5.879223 TGATCAGAGAAGAGAAGGAATTTGC 59.121 40.000 0.00 0.00 0.00 3.68
2060 3081 7.918536 TTGATCAGAGAAGAGAAGGAATTTG 57.081 36.000 0.00 0.00 0.00 2.32
2061 3082 8.162746 AGTTTGATCAGAGAAGAGAAGGAATTT 58.837 33.333 0.00 0.00 0.00 1.82
2062 3083 7.607223 CAGTTTGATCAGAGAAGAGAAGGAATT 59.393 37.037 0.00 0.00 0.00 2.17
2063 3084 7.104939 CAGTTTGATCAGAGAAGAGAAGGAAT 58.895 38.462 0.00 0.00 0.00 3.01
2064 3085 6.462500 CAGTTTGATCAGAGAAGAGAAGGAA 58.538 40.000 0.00 0.00 0.00 3.36
2065 3086 5.568423 GCAGTTTGATCAGAGAAGAGAAGGA 60.568 44.000 0.00 0.00 0.00 3.36
2066 3087 4.630940 GCAGTTTGATCAGAGAAGAGAAGG 59.369 45.833 0.00 0.00 0.00 3.46
2067 3088 5.236282 TGCAGTTTGATCAGAGAAGAGAAG 58.764 41.667 0.00 0.00 0.00 2.85
2068 3089 5.219343 TGCAGTTTGATCAGAGAAGAGAA 57.781 39.130 0.00 0.00 0.00 2.87
2069 3090 4.282957 ACTGCAGTTTGATCAGAGAAGAGA 59.717 41.667 15.25 0.00 0.00 3.10
2070 3091 4.567971 ACTGCAGTTTGATCAGAGAAGAG 58.432 43.478 15.25 0.00 0.00 2.85
2071 3092 4.613925 ACTGCAGTTTGATCAGAGAAGA 57.386 40.909 15.25 0.00 0.00 2.87
2072 3093 5.233225 TGTACTGCAGTTTGATCAGAGAAG 58.767 41.667 27.06 0.00 0.00 2.85
2073 3094 5.213891 TGTACTGCAGTTTGATCAGAGAA 57.786 39.130 27.06 0.00 0.00 2.87
2074 3095 4.871933 TGTACTGCAGTTTGATCAGAGA 57.128 40.909 27.06 0.00 0.00 3.10
2075 3096 6.292757 GCATATGTACTGCAGTTTGATCAGAG 60.293 42.308 27.06 8.37 39.46 3.35
2076 3097 5.525012 GCATATGTACTGCAGTTTGATCAGA 59.475 40.000 27.06 13.72 39.46 3.27
2077 3098 5.277683 GGCATATGTACTGCAGTTTGATCAG 60.278 44.000 27.06 11.12 41.47 2.90
2078 3099 4.576053 GGCATATGTACTGCAGTTTGATCA 59.424 41.667 27.06 16.05 41.47 2.92
2079 3100 4.576053 TGGCATATGTACTGCAGTTTGATC 59.424 41.667 27.06 11.09 41.47 2.92
2080 3101 4.525996 TGGCATATGTACTGCAGTTTGAT 58.474 39.130 27.06 16.20 41.47 2.57
2081 3102 3.949132 TGGCATATGTACTGCAGTTTGA 58.051 40.909 27.06 9.68 41.47 2.69
2082 3103 4.906065 ATGGCATATGTACTGCAGTTTG 57.094 40.909 27.06 15.34 41.47 2.93
2083 3104 5.653769 AGAAATGGCATATGTACTGCAGTTT 59.346 36.000 27.06 12.94 41.47 2.66
2084 3105 5.195940 AGAAATGGCATATGTACTGCAGTT 58.804 37.500 27.06 10.01 41.47 3.16
2085 3106 4.785301 AGAAATGGCATATGTACTGCAGT 58.215 39.130 25.12 25.12 41.47 4.40
2086 3107 5.297527 TGAAGAAATGGCATATGTACTGCAG 59.702 40.000 13.48 13.48 41.47 4.41
2087 3108 5.192176 TGAAGAAATGGCATATGTACTGCA 58.808 37.500 0.00 0.00 41.47 4.41
2093 3114 9.590451 CAAAATTACTGAAGAAATGGCATATGT 57.410 29.630 0.00 0.00 0.00 2.29
2098 3119 7.593273 CGTAACAAAATTACTGAAGAAATGGCA 59.407 33.333 0.00 0.00 0.00 4.92
2099 3120 7.410407 GCGTAACAAAATTACTGAAGAAATGGC 60.410 37.037 0.00 0.00 0.00 4.40
2157 3186 4.389992 ACATTTGCAGTGATCAGAACTACG 59.610 41.667 0.00 0.00 0.00 3.51
2177 3214 3.009723 CGAGCTGATTACCAACCAACAT 58.990 45.455 0.00 0.00 0.00 2.71
2460 3497 1.758514 GAGACCTCCTCCATCGCCA 60.759 63.158 0.00 0.00 35.87 5.69
2502 3539 0.734253 CTTGCGAAGAGACAGACCCG 60.734 60.000 0.00 0.00 0.00 5.28
2540 3582 1.629013 CGCTCTGTAATTGCGTCTGA 58.371 50.000 0.00 0.00 44.00 3.27
2552 3594 4.730949 TTAAGCAACCTATACGCTCTGT 57.269 40.909 0.00 0.00 34.11 3.41
2557 3599 5.065474 TGAACCATTTAAGCAACCTATACGC 59.935 40.000 0.00 0.00 0.00 4.42
2558 3600 6.671614 TGAACCATTTAAGCAACCTATACG 57.328 37.500 0.00 0.00 0.00 3.06
2559 3601 6.918022 GCATGAACCATTTAAGCAACCTATAC 59.082 38.462 0.00 0.00 0.00 1.47
2576 3618 2.177531 CGCTGCACTGCATGAACC 59.822 61.111 3.64 0.00 38.13 3.62
2588 3630 2.253452 CTTGAACCAGCACGCTGC 59.747 61.111 13.65 1.02 45.46 5.25
2589 3631 1.280746 CACTTGAACCAGCACGCTG 59.719 57.895 12.17 12.17 43.26 5.18
2590 3632 1.893808 CCACTTGAACCAGCACGCT 60.894 57.895 0.00 0.00 0.00 5.07
2591 3633 2.117941 GACCACTTGAACCAGCACGC 62.118 60.000 0.00 0.00 0.00 5.34
2592 3634 0.813610 TGACCACTTGAACCAGCACG 60.814 55.000 0.00 0.00 0.00 5.34
2593 3635 1.388547 TTGACCACTTGAACCAGCAC 58.611 50.000 0.00 0.00 0.00 4.40
2594 3636 2.136298 TTTGACCACTTGAACCAGCA 57.864 45.000 0.00 0.00 0.00 4.41
2595 3637 6.699575 ATATATTTGACCACTTGAACCAGC 57.300 37.500 0.00 0.00 0.00 4.85
2624 3666 9.739276 ACTTATGGAAAATGTAATTCAGAGTGA 57.261 29.630 0.00 0.00 33.67 3.41
2628 3670 9.638239 GCAAACTTATGGAAAATGTAATTCAGA 57.362 29.630 0.00 0.00 33.67 3.27
2629 3671 9.643693 AGCAAACTTATGGAAAATGTAATTCAG 57.356 29.630 0.00 0.00 33.67 3.02
2634 3676 9.906660 CTGTTAGCAAACTTATGGAAAATGTAA 57.093 29.630 0.00 0.00 36.51 2.41
2635 3677 9.290988 TCTGTTAGCAAACTTATGGAAAATGTA 57.709 29.630 0.00 0.00 36.51 2.29
2636 3678 8.177119 TCTGTTAGCAAACTTATGGAAAATGT 57.823 30.769 0.00 0.00 36.51 2.71
2637 3679 9.132521 CTTCTGTTAGCAAACTTATGGAAAATG 57.867 33.333 0.00 0.00 36.51 2.32
2638 3680 8.306761 CCTTCTGTTAGCAAACTTATGGAAAAT 58.693 33.333 0.00 0.00 36.51 1.82
2639 3681 7.255801 CCCTTCTGTTAGCAAACTTATGGAAAA 60.256 37.037 0.00 0.00 36.51 2.29
2640 3682 6.208599 CCCTTCTGTTAGCAAACTTATGGAAA 59.791 38.462 0.00 0.00 36.51 3.13
2641 3683 5.710099 CCCTTCTGTTAGCAAACTTATGGAA 59.290 40.000 0.00 0.00 36.51 3.53
2642 3684 5.222048 ACCCTTCTGTTAGCAAACTTATGGA 60.222 40.000 0.00 0.00 36.51 3.41
2643 3685 5.010282 ACCCTTCTGTTAGCAAACTTATGG 58.990 41.667 0.00 0.00 36.51 2.74
2644 3686 6.575162 AACCCTTCTGTTAGCAAACTTATG 57.425 37.500 0.00 0.00 36.51 1.90
2645 3687 7.004691 AGAAACCCTTCTGTTAGCAAACTTAT 58.995 34.615 0.00 0.00 40.54 1.73
2646 3688 6.362248 AGAAACCCTTCTGTTAGCAAACTTA 58.638 36.000 0.00 0.00 40.54 2.24
2647 3689 5.201243 AGAAACCCTTCTGTTAGCAAACTT 58.799 37.500 0.00 0.00 40.54 2.66
2648 3690 4.793201 AGAAACCCTTCTGTTAGCAAACT 58.207 39.130 0.00 0.00 40.54 2.66
2649 3691 6.819397 ATAGAAACCCTTCTGTTAGCAAAC 57.181 37.500 0.00 0.00 42.11 2.93
2650 3692 6.208599 CCAATAGAAACCCTTCTGTTAGCAAA 59.791 38.462 0.00 0.00 40.03 3.68
2651 3693 5.710099 CCAATAGAAACCCTTCTGTTAGCAA 59.290 40.000 0.00 0.00 40.03 3.91
2652 3694 5.222048 ACCAATAGAAACCCTTCTGTTAGCA 60.222 40.000 0.00 0.00 40.03 3.49
2653 3695 5.254115 ACCAATAGAAACCCTTCTGTTAGC 58.746 41.667 0.00 0.00 40.03 3.09
2654 3696 6.712276 AGACCAATAGAAACCCTTCTGTTAG 58.288 40.000 0.00 0.00 40.03 2.34
2655 3697 6.697641 AGACCAATAGAAACCCTTCTGTTA 57.302 37.500 0.00 0.00 40.03 2.41
2656 3698 5.584551 AGACCAATAGAAACCCTTCTGTT 57.415 39.130 0.00 0.00 42.01 3.16
2657 3699 6.697641 TTAGACCAATAGAAACCCTTCTGT 57.302 37.500 0.00 0.00 42.11 3.41
2684 3726 9.337396 TGTTCACAATGTTCAGAGTAAACTTAT 57.663 29.630 0.00 0.00 0.00 1.73
2685 3727 8.725405 TGTTCACAATGTTCAGAGTAAACTTA 57.275 30.769 0.00 0.00 0.00 2.24
2686 3728 7.624360 TGTTCACAATGTTCAGAGTAAACTT 57.376 32.000 0.00 0.00 0.00 2.66
2687 3729 7.120579 TGTTGTTCACAATGTTCAGAGTAAACT 59.879 33.333 0.00 0.00 38.24 2.66
2688 3730 7.247728 TGTTGTTCACAATGTTCAGAGTAAAC 58.752 34.615 0.00 0.00 38.24 2.01
2689 3731 7.120579 ACTGTTGTTCACAATGTTCAGAGTAAA 59.879 33.333 12.53 0.00 38.24 2.01
2690 3732 6.597672 ACTGTTGTTCACAATGTTCAGAGTAA 59.402 34.615 12.53 0.00 38.24 2.24
2691 3733 6.112734 ACTGTTGTTCACAATGTTCAGAGTA 58.887 36.000 12.53 0.00 38.24 2.59
2692 3734 4.943705 ACTGTTGTTCACAATGTTCAGAGT 59.056 37.500 12.53 0.00 38.24 3.24
2693 3735 5.490139 ACTGTTGTTCACAATGTTCAGAG 57.510 39.130 12.53 0.00 38.24 3.35
2694 3736 5.007626 GCTACTGTTGTTCACAATGTTCAGA 59.992 40.000 12.53 0.58 38.24 3.27
2695 3737 5.207768 GCTACTGTTGTTCACAATGTTCAG 58.792 41.667 0.00 1.65 38.24 3.02
2696 3738 4.637977 TGCTACTGTTGTTCACAATGTTCA 59.362 37.500 0.00 0.00 38.24 3.18
2697 3739 5.168526 TGCTACTGTTGTTCACAATGTTC 57.831 39.130 0.00 0.00 38.24 3.18
2698 3740 5.105957 TGTTGCTACTGTTGTTCACAATGTT 60.106 36.000 0.00 0.00 38.24 2.71
2699 3741 4.397730 TGTTGCTACTGTTGTTCACAATGT 59.602 37.500 0.00 1.82 38.24 2.71
2700 3742 4.919206 TGTTGCTACTGTTGTTCACAATG 58.081 39.130 0.00 0.00 38.24 2.82
2701 3743 5.105957 TGTTGTTGCTACTGTTGTTCACAAT 60.106 36.000 0.00 0.00 38.24 2.71
2702 3744 4.216472 TGTTGTTGCTACTGTTGTTCACAA 59.784 37.500 0.00 0.00 33.87 3.33
2703 3745 3.753797 TGTTGTTGCTACTGTTGTTCACA 59.246 39.130 0.00 0.00 0.00 3.58
2704 3746 4.349663 TGTTGTTGCTACTGTTGTTCAC 57.650 40.909 0.00 0.00 0.00 3.18
2705 3747 4.216472 TGTTGTTGTTGCTACTGTTGTTCA 59.784 37.500 0.00 0.00 0.00 3.18
2706 3748 4.728534 TGTTGTTGTTGCTACTGTTGTTC 58.271 39.130 0.00 0.00 0.00 3.18
2707 3749 4.775058 TGTTGTTGTTGCTACTGTTGTT 57.225 36.364 0.00 0.00 0.00 2.83
2708 3750 4.217550 AGTTGTTGTTGTTGCTACTGTTGT 59.782 37.500 0.00 0.00 0.00 3.32
2709 3751 4.732784 AGTTGTTGTTGTTGCTACTGTTG 58.267 39.130 0.00 0.00 0.00 3.33
2710 3752 4.436852 CGAGTTGTTGTTGTTGCTACTGTT 60.437 41.667 0.00 0.00 0.00 3.16
2711 3753 3.063452 CGAGTTGTTGTTGTTGCTACTGT 59.937 43.478 0.00 0.00 0.00 3.55
2712 3754 3.063452 ACGAGTTGTTGTTGTTGCTACTG 59.937 43.478 0.00 0.00 0.00 2.74
2713 3755 3.267483 ACGAGTTGTTGTTGTTGCTACT 58.733 40.909 0.00 0.00 0.00 2.57
2714 3756 3.668596 ACGAGTTGTTGTTGTTGCTAC 57.331 42.857 0.00 0.00 0.00 3.58
2715 3757 5.798015 TTTACGAGTTGTTGTTGTTGCTA 57.202 34.783 0.00 0.00 0.00 3.49
2716 3758 4.688511 TTTACGAGTTGTTGTTGTTGCT 57.311 36.364 0.00 0.00 0.00 3.91
2717 3759 5.741982 AGAATTTACGAGTTGTTGTTGTTGC 59.258 36.000 0.00 0.00 0.00 4.17
2718 3760 7.734538 AAGAATTTACGAGTTGTTGTTGTTG 57.265 32.000 0.00 0.00 0.00 3.33
2719 3761 9.843334 TTTAAGAATTTACGAGTTGTTGTTGTT 57.157 25.926 0.00 0.00 0.00 2.83
2720 3762 9.843334 TTTTAAGAATTTACGAGTTGTTGTTGT 57.157 25.926 0.00 0.00 0.00 3.32
2813 3855 1.074752 CGAAAGAGTGGCTGCTTCTC 58.925 55.000 13.53 13.53 0.00 2.87
2843 3885 2.823152 GCAGATTTTCCTTTCAGGGGGT 60.823 50.000 0.00 0.00 35.59 4.95
2846 3888 2.421424 CGAGCAGATTTTCCTTTCAGGG 59.579 50.000 0.00 0.00 35.59 4.45
2849 3891 2.744202 GCTCGAGCAGATTTTCCTTTCA 59.256 45.455 31.91 0.00 41.59 2.69
2894 3936 0.247460 TCACCGTCAGCTTGATGAGG 59.753 55.000 6.87 2.14 35.46 3.86
2979 4021 1.066858 GGAGGTGATGTTGAGCTTCGA 60.067 52.381 0.00 0.00 0.00 3.71
3082 4127 3.429141 CTGCTGCACGGCTCTTGG 61.429 66.667 0.00 0.00 0.00 3.61
3240 4285 0.590195 GCAATGACGATGATCAGGGC 59.410 55.000 0.09 0.00 30.46 5.19
3272 4321 9.755804 TCAATACACTGCAACAAATTAAAATGA 57.244 25.926 0.00 0.00 0.00 2.57
3434 4491 6.286240 TGTGTTAGTCAGTAATCAGCTCAT 57.714 37.500 0.00 0.00 0.00 2.90
3445 4502 4.415881 TGGTGTTCATGTGTTAGTCAGT 57.584 40.909 0.00 0.00 0.00 3.41
3450 4507 8.044060 ACTGATTAATGGTGTTCATGTGTTAG 57.956 34.615 0.00 0.00 35.99 2.34
3451 4508 7.994425 ACTGATTAATGGTGTTCATGTGTTA 57.006 32.000 0.00 0.00 35.99 2.41
3518 4575 9.765795 CAGTTAATTTCTTCTCGGGTTATCTAT 57.234 33.333 0.00 0.00 0.00 1.98
3519 4576 8.755977 ACAGTTAATTTCTTCTCGGGTTATCTA 58.244 33.333 0.00 0.00 0.00 1.98
3520 4577 7.621796 ACAGTTAATTTCTTCTCGGGTTATCT 58.378 34.615 0.00 0.00 0.00 1.98
3524 4581 5.617252 TGACAGTTAATTTCTTCTCGGGTT 58.383 37.500 0.00 0.00 0.00 4.11
3525 4582 5.223449 TGACAGTTAATTTCTTCTCGGGT 57.777 39.130 0.00 0.00 0.00 5.28
3526 4583 6.743575 ATTGACAGTTAATTTCTTCTCGGG 57.256 37.500 0.00 0.00 0.00 5.14
3528 4585 8.420189 GCAAAATTGACAGTTAATTTCTTCTCG 58.580 33.333 14.60 3.80 36.89 4.04
3529 4586 9.248291 TGCAAAATTGACAGTTAATTTCTTCTC 57.752 29.630 14.60 5.50 36.89 2.87
3530 4587 9.598517 TTGCAAAATTGACAGTTAATTTCTTCT 57.401 25.926 14.60 0.00 36.89 2.85
3555 4612 8.755977 AGAAATGCCTGAAGATTTGATAACATT 58.244 29.630 0.00 0.00 0.00 2.71
3568 4625 2.413765 CGTGCTGAAGAAATGCCTGAAG 60.414 50.000 0.00 0.00 0.00 3.02
3663 4720 1.429825 CTCGATCGACAGGACGCTT 59.570 57.895 15.15 0.00 0.00 4.68
3707 4764 2.356665 TACCTGCTTGTTGCCTTCAA 57.643 45.000 0.00 0.00 42.00 2.69
3736 4793 1.462616 TTGATGTGGAATTCGCTGGG 58.537 50.000 0.00 0.00 0.00 4.45
3882 4940 1.203523 GTAGCAGAGCTCCATATCCCG 59.796 57.143 10.93 0.00 40.44 5.14
3887 4945 1.464376 GCCCGTAGCAGAGCTCCATA 61.464 60.000 10.93 0.00 42.97 2.74
3996 5054 1.311859 CTCAGCAAGAACAGTTGGCA 58.688 50.000 0.00 0.00 0.00 4.92
4035 5093 2.738521 CCGGACCTGCACTTCGTG 60.739 66.667 0.00 0.00 36.51 4.35
4140 5198 2.243407 CTTCGACTTCGTCTTCTTCCG 58.757 52.381 0.00 0.00 40.80 4.30
4417 5481 0.822164 ACCACTATGTACTCGGCACC 59.178 55.000 0.00 0.00 0.00 5.01
4428 5492 4.765856 AGCCTAATCCGTACTACCACTATG 59.234 45.833 0.00 0.00 0.00 2.23
4432 5496 2.545322 GCAGCCTAATCCGTACTACCAC 60.545 54.545 0.00 0.00 0.00 4.16
4433 5497 1.684983 GCAGCCTAATCCGTACTACCA 59.315 52.381 0.00 0.00 0.00 3.25
4434 5498 1.684983 TGCAGCCTAATCCGTACTACC 59.315 52.381 0.00 0.00 0.00 3.18
4462 5526 2.669569 GTGACAGCACGGCACCAT 60.670 61.111 0.68 0.00 34.94 3.55
4468 5532 1.443872 GTACTCGGTGACAGCACGG 60.444 63.158 5.35 0.00 46.09 4.94
4587 5691 3.527533 TCGCTAGCAACGTCCATTTATT 58.472 40.909 16.45 0.00 0.00 1.40
4603 5707 4.554363 GCGCTCGGAAGCTCGCTA 62.554 66.667 0.00 0.00 46.91 4.26
4606 5710 3.549150 CAAGCGCTCGGAAGCTCG 61.549 66.667 12.06 0.00 46.91 5.03
4607 5711 2.029844 AACAAGCGCTCGGAAGCTC 61.030 57.895 12.06 0.00 46.91 4.09
4608 5712 2.031163 AACAAGCGCTCGGAAGCT 59.969 55.556 12.06 2.28 46.91 3.74
4609 5713 1.639298 ATCAACAAGCGCTCGGAAGC 61.639 55.000 12.06 0.00 45.56 3.86
4610 5714 0.095935 CATCAACAAGCGCTCGGAAG 59.904 55.000 12.06 4.85 0.00 3.46
4611 5715 1.298157 CCATCAACAAGCGCTCGGAA 61.298 55.000 12.06 0.00 0.00 4.30
4612 5716 1.741401 CCATCAACAAGCGCTCGGA 60.741 57.895 12.06 6.55 0.00 4.55
4613 5717 2.787249 CCATCAACAAGCGCTCGG 59.213 61.111 12.06 9.24 0.00 4.63
4614 5718 2.099062 GCCATCAACAAGCGCTCG 59.901 61.111 12.06 0.00 0.00 5.03
4615 5719 2.099062 CGCCATCAACAAGCGCTC 59.901 61.111 12.06 0.00 43.72 5.03
4619 5723 0.304705 CCGTATCGCCATCAACAAGC 59.695 55.000 0.00 0.00 0.00 4.01
4620 5724 1.327460 CACCGTATCGCCATCAACAAG 59.673 52.381 0.00 0.00 0.00 3.16
4621 5725 1.066787 TCACCGTATCGCCATCAACAA 60.067 47.619 0.00 0.00 0.00 2.83
4622 5726 0.533032 TCACCGTATCGCCATCAACA 59.467 50.000 0.00 0.00 0.00 3.33
4623 5727 1.593006 CTTCACCGTATCGCCATCAAC 59.407 52.381 0.00 0.00 0.00 3.18
4624 5728 1.478916 TCTTCACCGTATCGCCATCAA 59.521 47.619 0.00 0.00 0.00 2.57
4625 5729 1.067060 CTCTTCACCGTATCGCCATCA 59.933 52.381 0.00 0.00 0.00 3.07
4626 5730 1.603172 CCTCTTCACCGTATCGCCATC 60.603 57.143 0.00 0.00 0.00 3.51
4627 5731 0.389391 CCTCTTCACCGTATCGCCAT 59.611 55.000 0.00 0.00 0.00 4.40
4628 5732 0.681887 TCCTCTTCACCGTATCGCCA 60.682 55.000 0.00 0.00 0.00 5.69
4629 5733 0.674534 ATCCTCTTCACCGTATCGCC 59.325 55.000 0.00 0.00 0.00 5.54
4630 5734 2.128035 CAATCCTCTTCACCGTATCGC 58.872 52.381 0.00 0.00 0.00 4.58
4631 5735 2.128035 GCAATCCTCTTCACCGTATCG 58.872 52.381 0.00 0.00 0.00 2.92
4632 5736 3.126831 CTGCAATCCTCTTCACCGTATC 58.873 50.000 0.00 0.00 0.00 2.24
4633 5737 2.766263 TCTGCAATCCTCTTCACCGTAT 59.234 45.455 0.00 0.00 0.00 3.06
4634 5738 2.166459 CTCTGCAATCCTCTTCACCGTA 59.834 50.000 0.00 0.00 0.00 4.02
4635 5739 0.976641 TCTGCAATCCTCTTCACCGT 59.023 50.000 0.00 0.00 0.00 4.83
4636 5740 1.205655 TCTCTGCAATCCTCTTCACCG 59.794 52.381 0.00 0.00 0.00 4.94
4637 5741 3.557228 ATCTCTGCAATCCTCTTCACC 57.443 47.619 0.00 0.00 0.00 4.02
4638 5742 4.260170 ACAATCTCTGCAATCCTCTTCAC 58.740 43.478 0.00 0.00 0.00 3.18
4639 5743 4.564782 ACAATCTCTGCAATCCTCTTCA 57.435 40.909 0.00 0.00 0.00 3.02
4640 5744 5.413833 TGAAACAATCTCTGCAATCCTCTTC 59.586 40.000 0.00 0.00 0.00 2.87
4641 5745 5.319453 TGAAACAATCTCTGCAATCCTCTT 58.681 37.500 0.00 0.00 0.00 2.85
4642 5746 4.914983 TGAAACAATCTCTGCAATCCTCT 58.085 39.130 0.00 0.00 0.00 3.69
4643 5747 5.356190 TCATGAAACAATCTCTGCAATCCTC 59.644 40.000 0.00 0.00 0.00 3.71
4644 5748 5.258841 TCATGAAACAATCTCTGCAATCCT 58.741 37.500 0.00 0.00 0.00 3.24
4645 5749 5.571784 TCATGAAACAATCTCTGCAATCC 57.428 39.130 0.00 0.00 0.00 3.01
4718 5822 8.206126 TGGATGGCTCATTACATTCTAATCTA 57.794 34.615 0.00 0.00 0.00 1.98
4801 5906 3.003480 AGCCAAGTCTAATGTTTCTCGC 58.997 45.455 0.00 0.00 0.00 5.03
4865 5979 0.179059 CACGGGCCACATGCTGTATA 60.179 55.000 4.39 0.00 40.92 1.47
4881 5995 5.351233 TGTTGTAAGGAATAACAAGCACG 57.649 39.130 0.00 0.00 36.39 5.34
4893 6010 7.336679 CAGATATTTGGTGTCATGTTGTAAGGA 59.663 37.037 0.00 0.00 0.00 3.36
4906 6023 5.543507 TTTTTGGTGCAGATATTTGGTGT 57.456 34.783 0.00 0.00 0.00 4.16
4927 6044 5.263599 TGGGATGAGCATGTAGTTTGATTT 58.736 37.500 0.00 0.00 0.00 2.17
4978 6104 7.707624 TCACAAGAAGCTCCATGAATAAATT 57.292 32.000 0.00 0.00 0.00 1.82
4994 6120 6.924111 AGCTTTTGAAGTTTCTTCACAAGAA 58.076 32.000 27.57 13.11 45.30 2.52
5002 6128 6.015095 CCCTTCCATAGCTTTTGAAGTTTCTT 60.015 38.462 14.19 0.00 33.91 2.52
5049 6219 3.253371 ACAACACGCAGAAAGAAATCG 57.747 42.857 0.00 0.00 0.00 3.34
5078 6248 2.224475 GCCAGATAGTCATGGATGCACT 60.224 50.000 0.00 0.00 39.02 4.40
5105 6275 0.973632 TGTTCGCCCTGACATAGTGT 59.026 50.000 0.00 0.00 0.00 3.55
5176 6346 8.807948 ATGTAACAGGTCTTGCTAAATATTGT 57.192 30.769 0.00 0.00 0.00 2.71
5182 6352 5.472137 GTCCAATGTAACAGGTCTTGCTAAA 59.528 40.000 0.00 0.00 0.00 1.85
5192 6362 0.802494 GCGGTGTCCAATGTAACAGG 59.198 55.000 0.00 0.00 0.00 4.00
5218 6388 1.173043 CACGGCTTATCCTTGGCAAA 58.827 50.000 0.00 0.00 30.91 3.68
5229 6399 4.506758 GGTATTTTGTAGGACACGGCTTA 58.493 43.478 0.00 0.00 0.00 3.09
5271 6441 2.474526 CGCATCACGGTTTTCATGAGTC 60.475 50.000 0.00 0.00 38.44 3.36
5326 6498 9.845740 TGTAATATGCCTGACATTATGTACTTT 57.154 29.630 0.00 0.00 40.38 2.66
5329 6501 7.659799 TGGTGTAATATGCCTGACATTATGTAC 59.340 37.037 0.00 0.00 40.38 2.90
5334 6506 5.368230 TCCTGGTGTAATATGCCTGACATTA 59.632 40.000 0.00 0.00 40.38 1.90
5337 6509 3.111484 TCCTGGTGTAATATGCCTGACA 58.889 45.455 0.00 0.00 0.00 3.58
5443 6617 5.811190 TCCGAATCTTTCCAATACTCCAAA 58.189 37.500 0.00 0.00 0.00 3.28
5463 6637 2.290367 TCAAGATTATGCCGCAAATCCG 59.710 45.455 17.43 12.47 33.44 4.18
5542 6717 6.857777 AAGATATCTTTCATCTTGCCTTCG 57.142 37.500 12.37 0.00 40.42 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.