Multiple sequence alignment - TraesCS3D01G072700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G072700 chr3D 100.000 4601 0 0 1 4601 32591814 32596414 0.000000e+00 8497
1 TraesCS3D01G072700 chr3D 86.994 2937 281 49 791 3706 32584196 32587052 0.000000e+00 3214
2 TraesCS3D01G072700 chr3D 85.915 355 45 3 1 353 474460416 474460767 1.560000e-99 374
3 TraesCS3D01G072700 chr3D 93.333 105 7 0 614 718 32584093 32584197 6.160000e-34 156
4 TraesCS3D01G072700 chr3A 92.975 4014 192 47 611 4601 45083132 45087078 0.000000e+00 5768
5 TraesCS3D01G072700 chr3A 88.182 220 9 4 397 608 45082855 45083065 3.560000e-61 246
6 TraesCS3D01G072700 chr3B 92.371 2923 178 18 1026 3941 55126407 55129291 0.000000e+00 4120
7 TraesCS3D01G072700 chr3B 81.314 685 69 27 3931 4601 55130357 55130996 6.870000e-138 501
8 TraesCS3D01G072700 chr3B 82.051 351 22 13 611 947 55125876 55126199 1.270000e-65 261
9 TraesCS3D01G072700 chr3B 87.817 197 11 3 397 589 55125599 55125786 7.750000e-53 219
10 TraesCS3D01G072700 chr2A 77.556 2455 449 57 1185 3573 733628985 733631403 0.000000e+00 1387
11 TraesCS3D01G072700 chr2A 85.754 1088 149 5 1509 2592 235672046 235673131 0.000000e+00 1146
12 TraesCS3D01G072700 chr2A 72.906 561 107 22 1223 1756 611302949 611303491 7.970000e-33 152
13 TraesCS3D01G072700 chr1B 76.877 2530 467 70 1117 3577 548193678 548191198 0.000000e+00 1323
14 TraesCS3D01G072700 chr1B 76.339 2557 474 78 1110 3577 10007486 10004972 0.000000e+00 1249
15 TraesCS3D01G072700 chr1B 75.295 2457 503 64 1187 3571 8819837 8817413 0.000000e+00 1079
16 TraesCS3D01G072700 chr1B 78.045 1749 339 28 1866 3573 8855150 8853406 0.000000e+00 1061
17 TraesCS3D01G072700 chr4B 78.484 2031 370 41 1593 3573 36635362 36633349 0.000000e+00 1267
18 TraesCS3D01G072700 chr2B 76.661 2468 466 72 1187 3577 548624075 548626509 0.000000e+00 1266
19 TraesCS3D01G072700 chr1D 76.372 2497 461 67 1169 3577 6714551 6712096 0.000000e+00 1223
20 TraesCS3D01G072700 chr1D 85.714 357 40 8 1 353 469479489 469479140 2.620000e-97 366
21 TraesCS3D01G072700 chr2D 75.877 2479 475 82 1187 3577 469990672 469993115 0.000000e+00 1151
22 TraesCS3D01G072700 chr2D 86.031 1038 135 5 1509 2542 234331472 234330441 0.000000e+00 1105
23 TraesCS3D01G072700 chr2D 85.960 349 43 6 1 346 24221272 24220927 7.270000e-98 368
24 TraesCS3D01G072700 chr5B 76.278 2348 442 68 1332 3602 549548195 549550504 0.000000e+00 1144
25 TraesCS3D01G072700 chr5B 85.876 354 48 2 1 353 507805782 507806134 4.350000e-100 375
26 TraesCS3D01G072700 chr1A 75.416 1863 364 55 1110 2916 9375649 9373825 0.000000e+00 817
27 TraesCS3D01G072700 chrUn 86.275 357 45 3 1 356 332817059 332816706 7.220000e-103 385
28 TraesCS3D01G072700 chrUn 86.275 357 45 3 1 356 332825435 332825082 7.220000e-103 385
29 TraesCS3D01G072700 chrUn 86.441 354 44 3 1 353 343435971 343436321 7.220000e-103 385
30 TraesCS3D01G072700 chr5D 86.782 348 42 4 7 352 397013798 397013453 7.220000e-103 385
31 TraesCS3D01G072700 chr6B 85.634 355 41 10 1 352 688597218 688597565 9.410000e-97 364
32 TraesCS3D01G072700 chr7D 74.347 842 190 21 2666 3497 543625653 543624828 7.380000e-88 335


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G072700 chr3D 32591814 32596414 4600 False 8497.00 8497 100.00000 1 4601 1 chr3D.!!$F1 4600
1 TraesCS3D01G072700 chr3D 32584093 32587052 2959 False 1685.00 3214 90.16350 614 3706 2 chr3D.!!$F3 3092
2 TraesCS3D01G072700 chr3A 45082855 45087078 4223 False 3007.00 5768 90.57850 397 4601 2 chr3A.!!$F1 4204
3 TraesCS3D01G072700 chr3B 55125599 55130996 5397 False 1275.25 4120 85.88825 397 4601 4 chr3B.!!$F1 4204
4 TraesCS3D01G072700 chr2A 733628985 733631403 2418 False 1387.00 1387 77.55600 1185 3573 1 chr2A.!!$F3 2388
5 TraesCS3D01G072700 chr2A 235672046 235673131 1085 False 1146.00 1146 85.75400 1509 2592 1 chr2A.!!$F1 1083
6 TraesCS3D01G072700 chr1B 548191198 548193678 2480 True 1323.00 1323 76.87700 1117 3577 1 chr1B.!!$R4 2460
7 TraesCS3D01G072700 chr1B 10004972 10007486 2514 True 1249.00 1249 76.33900 1110 3577 1 chr1B.!!$R3 2467
8 TraesCS3D01G072700 chr1B 8817413 8819837 2424 True 1079.00 1079 75.29500 1187 3571 1 chr1B.!!$R1 2384
9 TraesCS3D01G072700 chr1B 8853406 8855150 1744 True 1061.00 1061 78.04500 1866 3573 1 chr1B.!!$R2 1707
10 TraesCS3D01G072700 chr4B 36633349 36635362 2013 True 1267.00 1267 78.48400 1593 3573 1 chr4B.!!$R1 1980
11 TraesCS3D01G072700 chr2B 548624075 548626509 2434 False 1266.00 1266 76.66100 1187 3577 1 chr2B.!!$F1 2390
12 TraesCS3D01G072700 chr1D 6712096 6714551 2455 True 1223.00 1223 76.37200 1169 3577 1 chr1D.!!$R1 2408
13 TraesCS3D01G072700 chr2D 469990672 469993115 2443 False 1151.00 1151 75.87700 1187 3577 1 chr2D.!!$F1 2390
14 TraesCS3D01G072700 chr2D 234330441 234331472 1031 True 1105.00 1105 86.03100 1509 2542 1 chr2D.!!$R2 1033
15 TraesCS3D01G072700 chr5B 549548195 549550504 2309 False 1144.00 1144 76.27800 1332 3602 1 chr5B.!!$F2 2270
16 TraesCS3D01G072700 chr1A 9373825 9375649 1824 True 817.00 817 75.41600 1110 2916 1 chr1A.!!$R1 1806
17 TraesCS3D01G072700 chr7D 543624828 543625653 825 True 335.00 335 74.34700 2666 3497 1 chr7D.!!$R1 831

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
355 356 0.029035 GCCAAATCGCTGCTCTCATG 59.971 55.0 0.00 0.00 0.00 3.07 F
726 803 0.319405 GCGTGTACTACCCAAGGTGT 59.681 55.0 0.00 0.00 36.19 4.16 F
1155 1388 0.326264 GCCTTCTCCTCCTCTTGCAA 59.674 55.0 0.00 0.00 0.00 4.08 F
1272 1532 0.951040 CGCTCGGCTTCTTCCAGTTT 60.951 55.0 0.00 0.00 0.00 2.66 F
1349 1621 1.435256 AGCTCCAACTGGTACCTTGT 58.565 50.0 14.36 9.32 36.34 3.16 F
3150 3552 0.032540 CAGCTTTTGTGGGCAGGAAC 59.967 55.0 0.00 0.00 0.00 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1272 1532 1.001181 GTAGTGTTACTTGGTGGCGGA 59.999 52.381 0.00 0.0 0.00 5.54 R
1602 1943 2.579410 AGCTTTCCCATAACCGTTGT 57.421 45.000 0.00 0.0 0.00 3.32 R
2775 3161 2.595386 GCACCATCAAGCCTTTTTACG 58.405 47.619 0.00 0.0 0.00 3.18 R
3009 3411 3.508402 GCAAGTAGGATAGTCCTCTAGCC 59.492 52.174 0.97 0.0 45.66 3.93 R
3346 3775 1.166129 AGCTTGCTGATGACTTGCAG 58.834 50.000 0.00 0.0 38.01 4.41 R
3963 5484 1.598130 GAAGTGGCCAGCAGTTCGT 60.598 57.895 5.11 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 3.988379 TTTTGTGGTGCAAGATGTCTC 57.012 42.857 0.00 0.00 38.47 3.36
51 52 2.936919 TTGTGGTGCAAGATGTCTCT 57.063 45.000 0.00 0.00 32.52 3.10
52 53 2.174363 TGTGGTGCAAGATGTCTCTG 57.826 50.000 0.00 0.00 0.00 3.35
53 54 1.417517 TGTGGTGCAAGATGTCTCTGT 59.582 47.619 0.00 0.00 0.00 3.41
54 55 2.632512 TGTGGTGCAAGATGTCTCTGTA 59.367 45.455 0.00 0.00 0.00 2.74
55 56 2.996621 GTGGTGCAAGATGTCTCTGTAC 59.003 50.000 0.00 0.00 0.00 2.90
56 57 2.263077 GGTGCAAGATGTCTCTGTACG 58.737 52.381 0.00 0.00 0.00 3.67
57 58 2.352814 GGTGCAAGATGTCTCTGTACGT 60.353 50.000 0.00 0.00 0.00 3.57
58 59 2.663602 GTGCAAGATGTCTCTGTACGTG 59.336 50.000 0.00 0.00 0.00 4.49
59 60 2.556622 TGCAAGATGTCTCTGTACGTGA 59.443 45.455 0.00 0.00 0.00 4.35
60 61 3.005367 TGCAAGATGTCTCTGTACGTGAA 59.995 43.478 0.00 0.00 0.00 3.18
61 62 3.365220 GCAAGATGTCTCTGTACGTGAAC 59.635 47.826 0.00 0.00 0.00 3.18
62 63 4.799678 CAAGATGTCTCTGTACGTGAACT 58.200 43.478 0.00 0.00 0.00 3.01
63 64 5.619309 GCAAGATGTCTCTGTACGTGAACTA 60.619 44.000 0.00 0.00 0.00 2.24
64 65 5.548706 AGATGTCTCTGTACGTGAACTAC 57.451 43.478 0.00 0.00 0.00 2.73
78 79 5.942325 GTGAACTACGTGCAAAATTTTGT 57.058 34.783 27.13 13.32 40.24 2.83
79 80 5.713281 GTGAACTACGTGCAAAATTTTGTG 58.287 37.500 27.13 20.17 40.24 3.33
80 81 5.513495 GTGAACTACGTGCAAAATTTTGTGA 59.487 36.000 27.13 14.63 40.24 3.58
81 82 6.034044 GTGAACTACGTGCAAAATTTTGTGAA 59.966 34.615 27.13 13.83 40.24 3.18
82 83 6.252441 TGAACTACGTGCAAAATTTTGTGAAG 59.748 34.615 27.13 19.19 40.24 3.02
83 84 5.646606 ACTACGTGCAAAATTTTGTGAAGT 58.353 33.333 27.13 22.63 40.24 3.01
84 85 6.096695 ACTACGTGCAAAATTTTGTGAAGTT 58.903 32.000 27.13 12.70 40.24 2.66
85 86 5.854431 ACGTGCAAAATTTTGTGAAGTTT 57.146 30.435 27.13 7.47 40.24 2.66
86 87 5.616658 ACGTGCAAAATTTTGTGAAGTTTG 58.383 33.333 27.13 13.61 40.24 2.93
87 88 5.020758 CGTGCAAAATTTTGTGAAGTTTGG 58.979 37.500 27.13 3.47 40.24 3.28
88 89 5.163913 CGTGCAAAATTTTGTGAAGTTTGGA 60.164 36.000 27.13 7.54 40.24 3.53
89 90 6.020984 GTGCAAAATTTTGTGAAGTTTGGAC 58.979 36.000 27.13 16.19 40.24 4.02
90 91 5.702670 TGCAAAATTTTGTGAAGTTTGGACA 59.297 32.000 27.13 12.37 40.24 4.02
91 92 6.373774 TGCAAAATTTTGTGAAGTTTGGACAT 59.626 30.769 27.13 0.00 40.24 3.06
92 93 7.094463 TGCAAAATTTTGTGAAGTTTGGACATT 60.094 29.630 27.13 0.00 40.24 2.71
93 94 7.429051 GCAAAATTTTGTGAAGTTTGGACATTC 59.571 33.333 27.13 5.40 40.24 2.67
94 95 6.826893 AATTTTGTGAAGTTTGGACATTCG 57.173 33.333 0.00 0.00 0.00 3.34
95 96 5.568685 TTTTGTGAAGTTTGGACATTCGA 57.431 34.783 0.00 0.00 0.00 3.71
96 97 4.811555 TTGTGAAGTTTGGACATTCGAG 57.188 40.909 0.00 0.00 0.00 4.04
97 98 3.138304 TGTGAAGTTTGGACATTCGAGG 58.862 45.455 0.00 0.00 0.00 4.63
98 99 3.181459 TGTGAAGTTTGGACATTCGAGGA 60.181 43.478 0.00 0.00 0.00 3.71
99 100 3.433615 GTGAAGTTTGGACATTCGAGGAG 59.566 47.826 0.00 0.00 0.00 3.69
100 101 2.100605 AGTTTGGACATTCGAGGAGC 57.899 50.000 0.00 0.00 0.00 4.70
101 102 1.625818 AGTTTGGACATTCGAGGAGCT 59.374 47.619 0.00 0.00 0.00 4.09
102 103 2.003301 GTTTGGACATTCGAGGAGCTC 58.997 52.381 4.71 4.71 0.00 4.09
116 117 4.745549 GCTCGTGGCGAAAATGTC 57.254 55.556 0.00 0.00 34.74 3.06
117 118 1.866237 GCTCGTGGCGAAAATGTCA 59.134 52.632 0.00 0.00 34.74 3.58
118 119 0.237235 GCTCGTGGCGAAAATGTCAA 59.763 50.000 0.00 0.00 34.74 3.18
119 120 1.334599 GCTCGTGGCGAAAATGTCAAA 60.335 47.619 0.00 0.00 34.74 2.69
120 121 2.856720 GCTCGTGGCGAAAATGTCAAAA 60.857 45.455 0.00 0.00 34.74 2.44
121 122 3.564511 CTCGTGGCGAAAATGTCAAAAT 58.435 40.909 0.00 0.00 34.74 1.82
122 123 3.560503 TCGTGGCGAAAATGTCAAAATC 58.439 40.909 0.00 0.00 31.06 2.17
123 124 3.003793 TCGTGGCGAAAATGTCAAAATCA 59.996 39.130 0.00 0.00 31.06 2.57
124 125 3.361644 CGTGGCGAAAATGTCAAAATCAG 59.638 43.478 0.00 0.00 0.00 2.90
125 126 4.545610 GTGGCGAAAATGTCAAAATCAGA 58.454 39.130 0.00 0.00 0.00 3.27
126 127 5.163513 GTGGCGAAAATGTCAAAATCAGAT 58.836 37.500 0.00 0.00 0.00 2.90
127 128 6.321717 GTGGCGAAAATGTCAAAATCAGATA 58.678 36.000 0.00 0.00 0.00 1.98
128 129 6.974622 GTGGCGAAAATGTCAAAATCAGATAT 59.025 34.615 0.00 0.00 0.00 1.63
129 130 6.974048 TGGCGAAAATGTCAAAATCAGATATG 59.026 34.615 0.00 0.00 0.00 1.78
130 131 7.148103 TGGCGAAAATGTCAAAATCAGATATGA 60.148 33.333 0.00 0.00 0.00 2.15
131 132 7.701924 GGCGAAAATGTCAAAATCAGATATGAA 59.298 33.333 0.00 0.00 0.00 2.57
132 133 9.241317 GCGAAAATGTCAAAATCAGATATGAAT 57.759 29.630 0.00 0.00 0.00 2.57
138 139 8.681486 TGTCAAAATCAGATATGAATAGTGGG 57.319 34.615 0.00 0.00 0.00 4.61
139 140 8.493607 TGTCAAAATCAGATATGAATAGTGGGA 58.506 33.333 0.00 0.00 0.00 4.37
140 141 9.512588 GTCAAAATCAGATATGAATAGTGGGAT 57.487 33.333 0.00 0.00 0.00 3.85
147 148 9.919416 TCAGATATGAATAGTGGGATTTTCAAA 57.081 29.630 0.00 0.00 32.35 2.69
153 154 9.710900 ATGAATAGTGGGATTTTCAAAAGTTTC 57.289 29.630 0.00 0.00 32.35 2.78
154 155 8.923270 TGAATAGTGGGATTTTCAAAAGTTTCT 58.077 29.630 0.00 0.00 0.00 2.52
155 156 9.411801 GAATAGTGGGATTTTCAAAAGTTTCTC 57.588 33.333 0.00 0.00 0.00 2.87
156 157 6.790232 AGTGGGATTTTCAAAAGTTTCTCA 57.210 33.333 0.00 0.00 0.00 3.27
157 158 6.809869 AGTGGGATTTTCAAAAGTTTCTCAG 58.190 36.000 0.00 0.00 0.00 3.35
158 159 6.607198 AGTGGGATTTTCAAAAGTTTCTCAGA 59.393 34.615 0.00 0.00 0.00 3.27
159 160 6.697455 GTGGGATTTTCAAAAGTTTCTCAGAC 59.303 38.462 0.00 0.00 0.00 3.51
160 161 6.379703 TGGGATTTTCAAAAGTTTCTCAGACA 59.620 34.615 0.00 0.00 0.00 3.41
161 162 7.069826 TGGGATTTTCAAAAGTTTCTCAGACAT 59.930 33.333 0.00 0.00 0.00 3.06
162 163 7.928167 GGGATTTTCAAAAGTTTCTCAGACATT 59.072 33.333 0.00 0.00 0.00 2.71
163 164 8.972349 GGATTTTCAAAAGTTTCTCAGACATTC 58.028 33.333 0.00 0.00 0.00 2.67
164 165 7.969387 TTTTCAAAAGTTTCTCAGACATTCG 57.031 32.000 0.00 0.00 0.00 3.34
165 166 6.918892 TTCAAAAGTTTCTCAGACATTCGA 57.081 33.333 0.00 0.00 0.00 3.71
166 167 6.918892 TCAAAAGTTTCTCAGACATTCGAA 57.081 33.333 0.00 0.00 0.00 3.71
167 168 7.315247 TCAAAAGTTTCTCAGACATTCGAAA 57.685 32.000 0.00 0.00 0.00 3.46
168 169 7.930217 TCAAAAGTTTCTCAGACATTCGAAAT 58.070 30.769 0.00 0.00 0.00 2.17
169 170 8.405531 TCAAAAGTTTCTCAGACATTCGAAATT 58.594 29.630 0.00 0.00 0.00 1.82
170 171 9.023967 CAAAAGTTTCTCAGACATTCGAAATTT 57.976 29.630 0.00 0.00 30.08 1.82
171 172 8.566008 AAAGTTTCTCAGACATTCGAAATTTG 57.434 30.769 0.00 0.00 29.62 2.32
172 173 7.264373 AGTTTCTCAGACATTCGAAATTTGT 57.736 32.000 0.00 1.51 0.00 2.83
173 174 7.355778 AGTTTCTCAGACATTCGAAATTTGTC 58.644 34.615 18.40 18.40 40.00 3.18
175 176 7.496529 TTCTCAGACATTCGAAATTTGTCTT 57.503 32.000 23.69 11.32 45.88 3.01
176 177 7.496529 TCTCAGACATTCGAAATTTGTCTTT 57.503 32.000 23.69 7.87 45.88 2.52
177 178 7.930217 TCTCAGACATTCGAAATTTGTCTTTT 58.070 30.769 23.69 7.28 45.88 2.27
178 179 8.405531 TCTCAGACATTCGAAATTTGTCTTTTT 58.594 29.630 23.69 6.99 45.88 1.94
195 196 2.631160 TTTTTCCACAAGCTCCTCGA 57.369 45.000 0.00 0.00 0.00 4.04
196 197 2.631160 TTTTCCACAAGCTCCTCGAA 57.369 45.000 0.00 0.00 0.00 3.71
197 198 2.859165 TTTCCACAAGCTCCTCGAAT 57.141 45.000 0.00 0.00 0.00 3.34
198 199 2.099141 TTCCACAAGCTCCTCGAATG 57.901 50.000 0.00 0.00 0.00 2.67
199 200 0.976641 TCCACAAGCTCCTCGAATGT 59.023 50.000 0.00 0.00 0.00 2.71
200 201 1.066858 TCCACAAGCTCCTCGAATGTC 60.067 52.381 0.00 0.00 0.00 3.06
201 202 1.363744 CACAAGCTCCTCGAATGTCC 58.636 55.000 0.00 0.00 0.00 4.02
202 203 0.976641 ACAAGCTCCTCGAATGTCCA 59.023 50.000 0.00 0.00 0.00 4.02
203 204 1.347707 ACAAGCTCCTCGAATGTCCAA 59.652 47.619 0.00 0.00 0.00 3.53
204 205 2.224523 ACAAGCTCCTCGAATGTCCAAA 60.225 45.455 0.00 0.00 0.00 3.28
205 206 2.100605 AGCTCCTCGAATGTCCAAAC 57.899 50.000 0.00 0.00 0.00 2.93
206 207 1.625818 AGCTCCTCGAATGTCCAAACT 59.374 47.619 0.00 0.00 0.00 2.66
207 208 2.039084 AGCTCCTCGAATGTCCAAACTT 59.961 45.455 0.00 0.00 0.00 2.66
208 209 2.416893 GCTCCTCGAATGTCCAAACTTC 59.583 50.000 0.00 0.00 0.00 3.01
209 210 3.664107 CTCCTCGAATGTCCAAACTTCA 58.336 45.455 0.00 0.00 0.00 3.02
210 211 4.256920 CTCCTCGAATGTCCAAACTTCAT 58.743 43.478 0.00 0.00 0.00 2.57
211 212 5.414789 TCCTCGAATGTCCAAACTTCATA 57.585 39.130 0.00 0.00 0.00 2.15
212 213 5.800296 TCCTCGAATGTCCAAACTTCATAA 58.200 37.500 0.00 0.00 0.00 1.90
213 214 6.234920 TCCTCGAATGTCCAAACTTCATAAA 58.765 36.000 0.00 0.00 0.00 1.40
214 215 6.712998 TCCTCGAATGTCCAAACTTCATAAAA 59.287 34.615 0.00 0.00 0.00 1.52
215 216 7.393234 TCCTCGAATGTCCAAACTTCATAAAAT 59.607 33.333 0.00 0.00 0.00 1.82
216 217 8.028938 CCTCGAATGTCCAAACTTCATAAAATT 58.971 33.333 0.00 0.00 0.00 1.82
217 218 9.410556 CTCGAATGTCCAAACTTCATAAAATTT 57.589 29.630 0.00 0.00 0.00 1.82
218 219 9.757227 TCGAATGTCCAAACTTCATAAAATTTT 57.243 25.926 8.75 8.75 0.00 1.82
219 220 9.796062 CGAATGTCCAAACTTCATAAAATTTTG 57.204 29.630 13.76 0.00 0.00 2.44
220 221 9.597999 GAATGTCCAAACTTCATAAAATTTTGC 57.402 29.630 13.76 0.00 0.00 3.68
221 222 8.674263 ATGTCCAAACTTCATAAAATTTTGCA 57.326 26.923 13.76 0.00 0.00 4.08
222 223 8.674263 TGTCCAAACTTCATAAAATTTTGCAT 57.326 26.923 13.76 0.00 0.00 3.96
223 224 8.557864 TGTCCAAACTTCATAAAATTTTGCATG 58.442 29.630 13.76 10.04 0.00 4.06
224 225 8.016801 GTCCAAACTTCATAAAATTTTGCATGG 58.983 33.333 13.76 9.80 0.00 3.66
225 226 7.935755 TCCAAACTTCATAAAATTTTGCATGGA 59.064 29.630 13.76 11.59 0.00 3.41
226 227 8.566260 CCAAACTTCATAAAATTTTGCATGGAA 58.434 29.630 13.76 0.00 0.00 3.53
230 231 9.504708 ACTTCATAAAATTTTGCATGGAATTCA 57.495 25.926 13.76 0.00 0.00 2.57
231 232 9.763465 CTTCATAAAATTTTGCATGGAATTCAC 57.237 29.630 13.76 0.00 0.00 3.18
232 233 7.961855 TCATAAAATTTTGCATGGAATTCACG 58.038 30.769 13.76 0.00 0.00 4.35
233 234 4.666928 AAATTTTGCATGGAATTCACGC 57.333 36.364 7.93 6.89 34.78 5.34
234 235 2.808523 TTTTGCATGGAATTCACGCA 57.191 40.000 7.93 9.47 43.27 5.24
235 236 2.063156 TTTGCATGGAATTCACGCAC 57.937 45.000 13.32 0.00 44.72 5.34
236 237 0.957362 TTGCATGGAATTCACGCACA 59.043 45.000 13.32 0.22 44.72 4.57
237 238 0.522626 TGCATGGAATTCACGCACAG 59.477 50.000 7.93 0.00 39.85 3.66
238 239 0.179156 GCATGGAATTCACGCACAGG 60.179 55.000 7.93 0.00 34.28 4.00
239 240 1.452110 CATGGAATTCACGCACAGGA 58.548 50.000 7.93 0.00 0.00 3.86
240 241 1.399440 CATGGAATTCACGCACAGGAG 59.601 52.381 7.93 0.00 0.00 3.69
241 242 0.955428 TGGAATTCACGCACAGGAGC 60.955 55.000 7.93 0.00 0.00 4.70
242 243 0.955428 GGAATTCACGCACAGGAGCA 60.955 55.000 7.93 0.00 0.00 4.26
243 244 1.089920 GAATTCACGCACAGGAGCAT 58.910 50.000 0.00 0.00 0.00 3.79
244 245 1.063174 GAATTCACGCACAGGAGCATC 59.937 52.381 0.00 0.00 0.00 3.91
245 246 0.251354 ATTCACGCACAGGAGCATCT 59.749 50.000 0.00 0.00 33.73 2.90
246 247 0.035317 TTCACGCACAGGAGCATCTT 59.965 50.000 0.00 0.00 33.73 2.40
313 314 8.970691 ATTTTAAATCACTGTACTGTTCATGC 57.029 30.769 2.16 0.00 0.00 4.06
314 315 6.494893 TTAAATCACTGTACTGTTCATGCC 57.505 37.500 2.16 0.00 0.00 4.40
315 316 2.472695 TCACTGTACTGTTCATGCCC 57.527 50.000 2.16 0.00 0.00 5.36
316 317 1.078709 CACTGTACTGTTCATGCCCG 58.921 55.000 2.16 0.00 0.00 6.13
317 318 0.036388 ACTGTACTGTTCATGCCCGG 60.036 55.000 0.00 0.00 0.00 5.73
318 319 0.744414 CTGTACTGTTCATGCCCGGG 60.744 60.000 19.09 19.09 0.00 5.73
319 320 2.112815 GTACTGTTCATGCCCGGGC 61.113 63.158 39.40 39.40 42.35 6.13
320 321 2.297895 TACTGTTCATGCCCGGGCT 61.298 57.895 43.34 27.34 42.51 5.19
321 322 2.252072 TACTGTTCATGCCCGGGCTC 62.252 60.000 43.34 26.98 42.51 4.70
322 323 3.626996 CTGTTCATGCCCGGGCTCA 62.627 63.158 43.34 29.50 42.51 4.26
323 324 2.124151 GTTCATGCCCGGGCTCAT 60.124 61.111 43.34 28.62 42.51 2.90
324 325 2.189499 GTTCATGCCCGGGCTCATC 61.189 63.158 43.34 25.69 42.51 2.92
325 326 2.377810 TTCATGCCCGGGCTCATCT 61.378 57.895 43.34 21.28 42.51 2.90
326 327 2.593725 CATGCCCGGGCTCATCTG 60.594 66.667 43.34 27.32 42.51 2.90
327 328 2.769621 ATGCCCGGGCTCATCTGA 60.770 61.111 43.34 24.35 42.51 3.27
328 329 2.815945 ATGCCCGGGCTCATCTGAG 61.816 63.158 43.34 4.66 44.75 3.35
337 338 1.446791 CTCATCTGAGCCTGGGAGC 59.553 63.158 0.00 0.00 35.13 4.70
338 339 2.042404 CTCATCTGAGCCTGGGAGCC 62.042 65.000 0.00 0.00 35.13 4.70
339 340 2.041762 ATCTGAGCCTGGGAGCCA 59.958 61.111 0.00 0.00 0.00 4.75
340 341 1.617536 ATCTGAGCCTGGGAGCCAA 60.618 57.895 0.00 0.00 30.80 4.52
341 342 1.210204 ATCTGAGCCTGGGAGCCAAA 61.210 55.000 0.00 0.00 30.80 3.28
342 343 1.210204 TCTGAGCCTGGGAGCCAAAT 61.210 55.000 0.00 0.00 30.80 2.32
343 344 0.750911 CTGAGCCTGGGAGCCAAATC 60.751 60.000 0.00 0.00 30.80 2.17
344 345 1.821332 GAGCCTGGGAGCCAAATCG 60.821 63.158 0.00 0.00 30.80 3.34
345 346 3.521796 GCCTGGGAGCCAAATCGC 61.522 66.667 0.00 0.00 30.80 4.58
346 347 2.273449 CCTGGGAGCCAAATCGCT 59.727 61.111 0.00 0.00 43.42 4.93
347 348 2.117156 CCTGGGAGCCAAATCGCTG 61.117 63.158 0.00 0.00 39.87 5.18
348 349 2.751436 TGGGAGCCAAATCGCTGC 60.751 61.111 0.00 0.00 45.68 5.25
349 350 2.439156 GGGAGCCAAATCGCTGCT 60.439 61.111 0.00 0.00 45.69 4.24
351 352 4.215349 GAGCCAAATCGCTGCTCT 57.785 55.556 3.61 0.00 46.19 4.09
352 353 2.013021 GAGCCAAATCGCTGCTCTC 58.987 57.895 3.61 0.00 46.19 3.20
353 354 0.742281 GAGCCAAATCGCTGCTCTCA 60.742 55.000 3.61 0.00 46.19 3.27
354 355 0.107312 AGCCAAATCGCTGCTCTCAT 60.107 50.000 0.00 0.00 37.82 2.90
355 356 0.029035 GCCAAATCGCTGCTCTCATG 59.971 55.000 0.00 0.00 0.00 3.07
356 357 1.660167 CCAAATCGCTGCTCTCATGA 58.340 50.000 0.00 0.00 0.00 3.07
357 358 2.011947 CCAAATCGCTGCTCTCATGAA 58.988 47.619 0.00 0.00 0.00 2.57
358 359 2.421073 CCAAATCGCTGCTCTCATGAAA 59.579 45.455 0.00 0.00 0.00 2.69
359 360 3.066342 CCAAATCGCTGCTCTCATGAAAT 59.934 43.478 0.00 0.00 0.00 2.17
360 361 4.274214 CCAAATCGCTGCTCTCATGAAATA 59.726 41.667 0.00 0.00 0.00 1.40
361 362 5.220912 CCAAATCGCTGCTCTCATGAAATAA 60.221 40.000 0.00 0.00 0.00 1.40
362 363 5.670149 AATCGCTGCTCTCATGAAATAAG 57.330 39.130 0.00 0.00 0.00 1.73
363 364 4.128925 TCGCTGCTCTCATGAAATAAGT 57.871 40.909 0.00 0.00 0.00 2.24
364 365 4.507710 TCGCTGCTCTCATGAAATAAGTT 58.492 39.130 0.00 0.00 0.00 2.66
365 366 4.568359 TCGCTGCTCTCATGAAATAAGTTC 59.432 41.667 0.00 0.00 36.70 3.01
366 367 4.569966 CGCTGCTCTCATGAAATAAGTTCT 59.430 41.667 0.00 0.00 37.13 3.01
367 368 5.064452 CGCTGCTCTCATGAAATAAGTTCTT 59.936 40.000 0.00 0.00 37.13 2.52
368 369 6.402983 CGCTGCTCTCATGAAATAAGTTCTTT 60.403 38.462 0.00 0.00 37.13 2.52
369 370 6.966066 GCTGCTCTCATGAAATAAGTTCTTTC 59.034 38.462 6.75 6.75 37.13 2.62
370 371 7.148272 GCTGCTCTCATGAAATAAGTTCTTTCT 60.148 37.037 13.12 0.00 37.13 2.52
371 372 8.261492 TGCTCTCATGAAATAAGTTCTTTCTC 57.739 34.615 13.12 0.00 37.13 2.87
372 373 8.099537 TGCTCTCATGAAATAAGTTCTTTCTCT 58.900 33.333 13.12 1.20 37.13 3.10
373 374 8.389603 GCTCTCATGAAATAAGTTCTTTCTCTG 58.610 37.037 13.12 10.80 37.13 3.35
374 375 8.261492 TCTCATGAAATAAGTTCTTTCTCTGC 57.739 34.615 13.12 0.00 37.13 4.26
375 376 7.879677 TCTCATGAAATAAGTTCTTTCTCTGCA 59.120 33.333 13.12 0.00 37.13 4.41
376 377 7.810658 TCATGAAATAAGTTCTTTCTCTGCAC 58.189 34.615 13.12 0.00 37.13 4.57
377 378 7.663081 TCATGAAATAAGTTCTTTCTCTGCACT 59.337 33.333 13.12 0.00 37.13 4.40
378 379 7.194607 TGAAATAAGTTCTTTCTCTGCACTG 57.805 36.000 13.12 0.00 37.13 3.66
379 380 6.767902 TGAAATAAGTTCTTTCTCTGCACTGT 59.232 34.615 13.12 0.00 37.13 3.55
380 381 7.931407 TGAAATAAGTTCTTTCTCTGCACTGTA 59.069 33.333 13.12 0.00 37.13 2.74
381 382 8.677148 AAATAAGTTCTTTCTCTGCACTGTAA 57.323 30.769 0.00 0.00 0.00 2.41
382 383 8.854614 AATAAGTTCTTTCTCTGCACTGTAAT 57.145 30.769 0.00 0.00 0.00 1.89
383 384 6.793492 AAGTTCTTTCTCTGCACTGTAATC 57.207 37.500 0.00 0.00 0.00 1.75
384 385 6.107901 AGTTCTTTCTCTGCACTGTAATCT 57.892 37.500 0.00 0.00 0.00 2.40
385 386 5.931146 AGTTCTTTCTCTGCACTGTAATCTG 59.069 40.000 0.00 0.00 0.00 2.90
386 387 4.248859 TCTTTCTCTGCACTGTAATCTGC 58.751 43.478 0.00 0.00 0.00 4.26
387 388 3.969287 TTCTCTGCACTGTAATCTGCT 57.031 42.857 0.00 0.00 34.29 4.24
388 389 5.185828 TCTTTCTCTGCACTGTAATCTGCTA 59.814 40.000 0.00 0.00 34.29 3.49
389 390 5.405935 TTCTCTGCACTGTAATCTGCTAA 57.594 39.130 0.00 0.00 34.29 3.09
390 391 5.003692 TCTCTGCACTGTAATCTGCTAAG 57.996 43.478 0.00 0.00 34.29 2.18
391 392 4.706962 TCTCTGCACTGTAATCTGCTAAGA 59.293 41.667 0.00 0.00 36.69 2.10
392 393 5.362143 TCTCTGCACTGTAATCTGCTAAGAT 59.638 40.000 0.00 0.00 45.48 2.40
393 394 6.547510 TCTCTGCACTGTAATCTGCTAAGATA 59.452 38.462 0.00 0.00 42.60 1.98
394 395 6.507900 TCTGCACTGTAATCTGCTAAGATAC 58.492 40.000 0.00 0.00 42.60 2.24
395 396 5.601662 TGCACTGTAATCTGCTAAGATACC 58.398 41.667 0.00 0.00 42.60 2.73
436 441 2.811317 CTGAGGCCGCGTGTTCTC 60.811 66.667 4.92 6.82 0.00 2.87
454 459 3.642755 GGGACGCTGTGTGAACAG 58.357 61.111 0.00 1.45 40.51 3.16
469 474 4.940654 TGTGAACAGTTGTCATGTCAGAAA 59.059 37.500 0.00 0.00 0.00 2.52
478 483 8.333908 CAGTTGTCATGTCAGAAATAGAATAGC 58.666 37.037 0.00 0.00 0.00 2.97
494 499 0.913934 TAGCCCTGCCATCTTCCACA 60.914 55.000 0.00 0.00 0.00 4.17
500 505 1.210155 GCCATCTTCCACACGTTGC 59.790 57.895 0.00 0.00 0.00 4.17
523 528 2.334006 AGAGTCCCACACCAATCTCT 57.666 50.000 0.00 0.00 0.00 3.10
541 546 1.162698 CTGTCATGGAGGCTGTGTTG 58.837 55.000 0.00 0.00 0.00 3.33
542 547 0.764271 TGTCATGGAGGCTGTGTTGA 59.236 50.000 0.00 0.00 0.00 3.18
543 548 1.142667 TGTCATGGAGGCTGTGTTGAA 59.857 47.619 0.00 0.00 0.00 2.69
544 549 1.537202 GTCATGGAGGCTGTGTTGAAC 59.463 52.381 0.00 0.00 0.00 3.18
545 550 1.421268 TCATGGAGGCTGTGTTGAACT 59.579 47.619 0.00 0.00 0.00 3.01
546 551 1.538512 CATGGAGGCTGTGTTGAACTG 59.461 52.381 0.00 0.00 0.00 3.16
547 552 0.546122 TGGAGGCTGTGTTGAACTGT 59.454 50.000 0.00 0.00 0.00 3.55
548 553 1.064758 TGGAGGCTGTGTTGAACTGTT 60.065 47.619 0.00 0.00 0.00 3.16
558 563 6.507958 TGTGTTGAACTGTTGATTGAAGAA 57.492 33.333 0.00 0.00 0.00 2.52
595 604 1.547372 AGCAAAAGGCAATCGCATTCT 59.453 42.857 0.00 0.00 42.33 2.40
609 618 1.293924 CATTCTGTGCACCGAGATCC 58.706 55.000 15.69 0.00 0.00 3.36
612 685 0.976641 TCTGTGCACCGAGATCCTTT 59.023 50.000 15.69 0.00 0.00 3.11
615 688 1.071542 TGTGCACCGAGATCCTTTTCA 59.928 47.619 15.69 0.00 0.00 2.69
618 691 3.191371 GTGCACCGAGATCCTTTTCATTT 59.809 43.478 5.22 0.00 0.00 2.32
646 722 8.064222 CAGTGACAGTTAATACAAACAGTGAAG 58.936 37.037 0.00 0.00 30.27 3.02
651 727 7.226720 ACAGTTAATACAAACAGTGAAGAGGTG 59.773 37.037 0.00 0.00 29.13 4.00
716 793 1.336148 CGTCCAGTTTGGCGTGTACTA 60.336 52.381 0.00 0.00 37.47 1.82
717 794 2.064014 GTCCAGTTTGGCGTGTACTAC 58.936 52.381 0.00 0.00 37.47 2.73
718 795 1.001181 TCCAGTTTGGCGTGTACTACC 59.999 52.381 0.00 0.00 37.47 3.18
719 796 1.435577 CAGTTTGGCGTGTACTACCC 58.564 55.000 0.00 0.00 0.00 3.69
720 797 1.050204 AGTTTGGCGTGTACTACCCA 58.950 50.000 0.00 0.00 0.00 4.51
722 799 1.802365 GTTTGGCGTGTACTACCCAAG 59.198 52.381 10.19 0.00 39.31 3.61
723 800 0.322322 TTGGCGTGTACTACCCAAGG 59.678 55.000 7.34 0.00 35.81 3.61
724 801 0.832983 TGGCGTGTACTACCCAAGGT 60.833 55.000 0.00 0.00 40.16 3.50
725 802 0.390735 GGCGTGTACTACCCAAGGTG 60.391 60.000 0.00 0.00 36.19 4.00
726 803 0.319405 GCGTGTACTACCCAAGGTGT 59.681 55.000 0.00 0.00 36.19 4.16
727 804 1.938016 GCGTGTACTACCCAAGGTGTG 60.938 57.143 0.00 0.00 36.19 3.82
766 845 3.507103 TGTTGGCATGAATCAAATCGG 57.493 42.857 0.00 0.00 0.00 4.18
807 886 2.746472 GCTGACACAGTTTGGTCTCCTT 60.746 50.000 0.00 0.00 35.11 3.36
867 958 3.211963 GGGCCATCACGTCCATGC 61.212 66.667 4.39 0.00 0.00 4.06
932 1023 2.050714 GTCGTCGTTGCCGTCTCA 60.051 61.111 0.00 0.00 35.01 3.27
1101 1334 4.613925 TCATTCACAGCACTCTTCTTCT 57.386 40.909 0.00 0.00 0.00 2.85
1155 1388 0.326264 GCCTTCTCCTCCTCTTGCAA 59.674 55.000 0.00 0.00 0.00 4.08
1272 1532 0.951040 CGCTCGGCTTCTTCCAGTTT 60.951 55.000 0.00 0.00 0.00 2.66
1274 1534 1.443802 CTCGGCTTCTTCCAGTTTCC 58.556 55.000 0.00 0.00 0.00 3.13
1284 1544 1.528309 CCAGTTTCCGCCACCAAGT 60.528 57.895 0.00 0.00 0.00 3.16
1310 1579 4.211374 CACTACTGTTAGCAAGTCCAACAC 59.789 45.833 0.00 0.00 0.00 3.32
1349 1621 1.435256 AGCTCCAACTGGTACCTTGT 58.565 50.000 14.36 9.32 36.34 3.16
1360 1632 5.887754 ACTGGTACCTTGTCATATGGTTTT 58.112 37.500 14.36 0.00 37.87 2.43
1408 1689 3.213264 TCGCCAATAGGGACGACC 58.787 61.111 0.00 0.00 39.27 4.79
1480 1779 2.095853 GGCAACCTTGTCATCATACACG 59.904 50.000 0.00 0.00 31.86 4.49
1602 1943 5.777223 CCTAGTCCTTACATCATCATCTGGA 59.223 44.000 0.00 0.00 0.00 3.86
2675 3055 5.464389 GTGGGTTAATCGCGTTTAGATACAT 59.536 40.000 5.77 0.00 0.00 2.29
2775 3161 5.990996 ACTAAGTGACTCGACTACTATAGCC 59.009 44.000 0.00 0.00 0.00 3.93
3009 3411 6.749036 AGGTACCAAATAGTCCTAGGAATG 57.251 41.667 21.87 11.44 0.00 2.67
3091 3493 2.182827 AGCCAGAGAACATACTGCTCA 58.817 47.619 0.00 0.00 33.40 4.26
3150 3552 0.032540 CAGCTTTTGTGGGCAGGAAC 59.967 55.000 0.00 0.00 0.00 3.62
3156 3558 3.306472 TTTGTGGGCAGGAACTTTAGT 57.694 42.857 0.00 0.00 34.60 2.24
3321 3744 0.810031 CATGTACTGGTAGCGGTGCC 60.810 60.000 15.40 15.40 0.00 5.01
3346 3775 5.335191 GGCGATCATGTTGAATATTTCCCTC 60.335 44.000 0.00 0.00 0.00 4.30
3423 3852 7.040755 CCACAACTACATGGTGACTTTGATTTA 60.041 37.037 0.00 0.00 36.72 1.40
3546 3975 0.755686 AGGAGATCGACATGCTTCCC 59.244 55.000 0.00 0.00 0.00 3.97
3719 4166 9.065871 CAAGCTTGCAATTACTAATAAGTTGTC 57.934 33.333 14.65 0.00 37.15 3.18
3720 4167 8.567285 AGCTTGCAATTACTAATAAGTTGTCT 57.433 30.769 0.00 0.00 37.15 3.41
3721 4168 8.669243 AGCTTGCAATTACTAATAAGTTGTCTC 58.331 33.333 0.00 0.00 37.15 3.36
3722 4169 8.669243 GCTTGCAATTACTAATAAGTTGTCTCT 58.331 33.333 0.00 0.00 37.15 3.10
3791 4238 4.785346 ACATGGATCCATCAAACTAGCT 57.215 40.909 24.93 0.00 33.90 3.32
3858 4305 1.421268 AGGAAGTCATTGGTGCAGTCA 59.579 47.619 0.00 0.00 0.00 3.41
3865 4312 0.392863 ATTGGTGCAGTCATAGCGCA 60.393 50.000 11.47 0.00 43.94 6.09
3886 4333 1.796796 GACTTGTGCTTCGCCATCC 59.203 57.895 0.00 0.00 0.00 3.51
3888 4335 2.745884 TTGTGCTTCGCCATCCGG 60.746 61.111 0.00 0.00 37.59 5.14
3889 4336 4.776322 TGTGCTTCGCCATCCGGG 62.776 66.667 0.00 0.00 40.85 5.73
4032 5553 3.972227 CAGAACCTGCAGGAACCG 58.028 61.111 39.19 19.65 38.94 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.953612 AGAGACATCTTGCACCACAAAAA 59.046 39.130 0.00 0.00 37.96 1.94
30 31 3.316029 CAGAGACATCTTGCACCACAAAA 59.684 43.478 0.00 0.00 37.96 2.44
31 32 2.880268 CAGAGACATCTTGCACCACAAA 59.120 45.455 0.00 0.00 37.96 2.83
32 33 2.158769 ACAGAGACATCTTGCACCACAA 60.159 45.455 0.00 0.00 31.64 3.33
33 34 1.417517 ACAGAGACATCTTGCACCACA 59.582 47.619 0.00 0.00 31.64 4.17
34 35 2.175878 ACAGAGACATCTTGCACCAC 57.824 50.000 0.00 0.00 31.64 4.16
35 36 2.352715 CGTACAGAGACATCTTGCACCA 60.353 50.000 0.00 0.00 31.64 4.17
36 37 2.263077 CGTACAGAGACATCTTGCACC 58.737 52.381 0.00 0.00 31.64 5.01
37 38 2.663602 CACGTACAGAGACATCTTGCAC 59.336 50.000 0.00 0.00 31.64 4.57
38 39 2.556622 TCACGTACAGAGACATCTTGCA 59.443 45.455 0.00 0.00 31.64 4.08
39 40 3.217599 TCACGTACAGAGACATCTTGC 57.782 47.619 0.00 0.00 31.64 4.01
40 41 4.799678 AGTTCACGTACAGAGACATCTTG 58.200 43.478 0.00 0.00 31.64 3.02
41 42 5.390673 CGTAGTTCACGTACAGAGACATCTT 60.391 44.000 0.00 0.00 45.82 2.40
42 43 4.093115 CGTAGTTCACGTACAGAGACATCT 59.907 45.833 0.00 0.00 45.82 2.90
43 44 4.332788 CGTAGTTCACGTACAGAGACATC 58.667 47.826 0.00 0.00 45.82 3.06
44 45 4.337985 CGTAGTTCACGTACAGAGACAT 57.662 45.455 0.00 0.00 45.82 3.06
45 46 3.800929 CGTAGTTCACGTACAGAGACA 57.199 47.619 0.00 0.00 45.82 3.41
56 57 5.513495 TCACAAAATTTTGCACGTAGTTCAC 59.487 36.000 26.94 0.00 38.88 3.18
57 58 5.641709 TCACAAAATTTTGCACGTAGTTCA 58.358 33.333 26.94 0.00 38.88 3.18
58 59 6.252655 ACTTCACAAAATTTTGCACGTAGTTC 59.747 34.615 26.94 0.00 38.88 3.01
59 60 6.096695 ACTTCACAAAATTTTGCACGTAGTT 58.903 32.000 26.94 5.80 38.88 2.24
60 61 5.646606 ACTTCACAAAATTTTGCACGTAGT 58.353 33.333 26.94 20.39 41.79 2.73
61 62 6.567769 AACTTCACAAAATTTTGCACGTAG 57.432 33.333 26.94 19.88 41.79 3.51
62 63 6.183360 CCAAACTTCACAAAATTTTGCACGTA 60.183 34.615 26.94 11.34 41.79 3.57
63 64 5.390356 CCAAACTTCACAAAATTTTGCACGT 60.390 36.000 26.94 15.98 41.79 4.49
64 65 5.020758 CCAAACTTCACAAAATTTTGCACG 58.979 37.500 26.94 17.10 41.79 5.34
65 66 6.020984 GTCCAAACTTCACAAAATTTTGCAC 58.979 36.000 26.94 7.72 41.79 4.57
66 67 5.702670 TGTCCAAACTTCACAAAATTTTGCA 59.297 32.000 26.94 13.70 41.79 4.08
67 68 6.175712 TGTCCAAACTTCACAAAATTTTGC 57.824 33.333 26.94 9.60 41.79 3.68
68 69 7.635587 CGAATGTCCAAACTTCACAAAATTTTG 59.364 33.333 25.73 25.73 43.62 2.44
69 70 7.547370 TCGAATGTCCAAACTTCACAAAATTTT 59.453 29.630 0.00 0.00 0.00 1.82
70 71 7.038659 TCGAATGTCCAAACTTCACAAAATTT 58.961 30.769 0.00 0.00 0.00 1.82
71 72 6.568869 TCGAATGTCCAAACTTCACAAAATT 58.431 32.000 0.00 0.00 0.00 1.82
72 73 6.142818 TCGAATGTCCAAACTTCACAAAAT 57.857 33.333 0.00 0.00 0.00 1.82
73 74 5.449862 CCTCGAATGTCCAAACTTCACAAAA 60.450 40.000 0.00 0.00 0.00 2.44
74 75 4.036262 CCTCGAATGTCCAAACTTCACAAA 59.964 41.667 0.00 0.00 0.00 2.83
75 76 3.563808 CCTCGAATGTCCAAACTTCACAA 59.436 43.478 0.00 0.00 0.00 3.33
76 77 3.138304 CCTCGAATGTCCAAACTTCACA 58.862 45.455 0.00 0.00 0.00 3.58
77 78 3.399330 TCCTCGAATGTCCAAACTTCAC 58.601 45.455 0.00 0.00 0.00 3.18
78 79 3.664107 CTCCTCGAATGTCCAAACTTCA 58.336 45.455 0.00 0.00 0.00 3.02
79 80 2.416893 GCTCCTCGAATGTCCAAACTTC 59.583 50.000 0.00 0.00 0.00 3.01
80 81 2.039084 AGCTCCTCGAATGTCCAAACTT 59.961 45.455 0.00 0.00 0.00 2.66
81 82 1.625818 AGCTCCTCGAATGTCCAAACT 59.374 47.619 0.00 0.00 0.00 2.66
82 83 2.003301 GAGCTCCTCGAATGTCCAAAC 58.997 52.381 0.87 0.00 0.00 2.93
83 84 2.386661 GAGCTCCTCGAATGTCCAAA 57.613 50.000 0.87 0.00 0.00 3.28
94 95 0.741221 ATTTTCGCCACGAGCTCCTC 60.741 55.000 8.47 0.00 40.39 3.71
95 96 1.021390 CATTTTCGCCACGAGCTCCT 61.021 55.000 8.47 0.00 40.39 3.69
96 97 1.298859 ACATTTTCGCCACGAGCTCC 61.299 55.000 8.47 0.00 40.39 4.70
97 98 0.095417 GACATTTTCGCCACGAGCTC 59.905 55.000 2.73 2.73 40.39 4.09
98 99 0.602638 TGACATTTTCGCCACGAGCT 60.603 50.000 0.00 0.00 40.39 4.09
99 100 0.237235 TTGACATTTTCGCCACGAGC 59.763 50.000 0.00 0.00 37.14 5.03
100 101 2.679355 TTTGACATTTTCGCCACGAG 57.321 45.000 0.00 0.00 37.14 4.18
101 102 3.003793 TGATTTTGACATTTTCGCCACGA 59.996 39.130 0.00 0.00 0.00 4.35
102 103 3.304257 TGATTTTGACATTTTCGCCACG 58.696 40.909 0.00 0.00 0.00 4.94
103 104 4.545610 TCTGATTTTGACATTTTCGCCAC 58.454 39.130 0.00 0.00 0.00 5.01
104 105 4.844998 TCTGATTTTGACATTTTCGCCA 57.155 36.364 0.00 0.00 0.00 5.69
105 106 7.195646 TCATATCTGATTTTGACATTTTCGCC 58.804 34.615 0.00 0.00 0.00 5.54
106 107 8.619146 TTCATATCTGATTTTGACATTTTCGC 57.381 30.769 0.00 0.00 0.00 4.70
112 113 9.293404 CCCACTATTCATATCTGATTTTGACAT 57.707 33.333 0.00 1.04 0.00 3.06
113 114 8.493607 TCCCACTATTCATATCTGATTTTGACA 58.506 33.333 0.00 0.00 0.00 3.58
114 115 8.908786 TCCCACTATTCATATCTGATTTTGAC 57.091 34.615 0.00 0.00 0.00 3.18
121 122 9.919416 TTTGAAAATCCCACTATTCATATCTGA 57.081 29.630 0.00 0.00 32.35 3.27
127 128 9.710900 GAAACTTTTGAAAATCCCACTATTCAT 57.289 29.630 0.00 0.00 32.35 2.57
128 129 8.923270 AGAAACTTTTGAAAATCCCACTATTCA 58.077 29.630 0.00 0.00 0.00 2.57
129 130 9.411801 GAGAAACTTTTGAAAATCCCACTATTC 57.588 33.333 0.00 0.00 0.00 1.75
130 131 8.923270 TGAGAAACTTTTGAAAATCCCACTATT 58.077 29.630 0.00 0.00 0.00 1.73
131 132 8.477419 TGAGAAACTTTTGAAAATCCCACTAT 57.523 30.769 0.00 0.00 0.00 2.12
132 133 7.777910 TCTGAGAAACTTTTGAAAATCCCACTA 59.222 33.333 0.00 0.00 0.00 2.74
133 134 6.607198 TCTGAGAAACTTTTGAAAATCCCACT 59.393 34.615 0.00 0.00 0.00 4.00
134 135 6.697455 GTCTGAGAAACTTTTGAAAATCCCAC 59.303 38.462 0.00 0.00 0.00 4.61
135 136 6.379703 TGTCTGAGAAACTTTTGAAAATCCCA 59.620 34.615 0.00 0.00 0.00 4.37
136 137 6.805713 TGTCTGAGAAACTTTTGAAAATCCC 58.194 36.000 0.00 0.00 0.00 3.85
137 138 8.877808 AATGTCTGAGAAACTTTTGAAAATCC 57.122 30.769 0.00 0.00 0.00 3.01
138 139 8.685536 CGAATGTCTGAGAAACTTTTGAAAATC 58.314 33.333 0.00 0.00 0.00 2.17
139 140 8.405531 TCGAATGTCTGAGAAACTTTTGAAAAT 58.594 29.630 0.00 0.00 0.00 1.82
140 141 7.757526 TCGAATGTCTGAGAAACTTTTGAAAA 58.242 30.769 0.00 0.00 0.00 2.29
141 142 7.315247 TCGAATGTCTGAGAAACTTTTGAAA 57.685 32.000 0.00 0.00 0.00 2.69
142 143 6.918892 TCGAATGTCTGAGAAACTTTTGAA 57.081 33.333 0.00 0.00 0.00 2.69
143 144 6.918892 TTCGAATGTCTGAGAAACTTTTGA 57.081 33.333 0.00 0.00 0.00 2.69
144 145 8.566008 AATTTCGAATGTCTGAGAAACTTTTG 57.434 30.769 0.00 0.00 35.74 2.44
145 146 9.023967 CAAATTTCGAATGTCTGAGAAACTTTT 57.976 29.630 0.00 0.00 35.74 2.27
146 147 8.190784 ACAAATTTCGAATGTCTGAGAAACTTT 58.809 29.630 0.00 0.00 35.74 2.66
147 148 7.707104 ACAAATTTCGAATGTCTGAGAAACTT 58.293 30.769 0.00 0.00 35.74 2.66
148 149 7.264373 ACAAATTTCGAATGTCTGAGAAACT 57.736 32.000 0.00 0.00 35.74 2.66
149 150 7.540362 GACAAATTTCGAATGTCTGAGAAAC 57.460 36.000 18.66 0.00 40.18 2.78
176 177 2.631160 TCGAGGAGCTTGTGGAAAAA 57.369 45.000 0.00 0.00 0.00 1.94
177 178 2.631160 TTCGAGGAGCTTGTGGAAAA 57.369 45.000 0.00 0.00 0.00 2.29
178 179 2.224523 ACATTCGAGGAGCTTGTGGAAA 60.225 45.455 0.00 0.00 0.00 3.13
179 180 1.347707 ACATTCGAGGAGCTTGTGGAA 59.652 47.619 0.00 0.00 0.00 3.53
180 181 0.976641 ACATTCGAGGAGCTTGTGGA 59.023 50.000 0.00 0.00 0.00 4.02
181 182 1.363744 GACATTCGAGGAGCTTGTGG 58.636 55.000 0.00 0.00 0.00 4.17
182 183 1.338105 TGGACATTCGAGGAGCTTGTG 60.338 52.381 0.00 0.00 0.00 3.33
183 184 0.976641 TGGACATTCGAGGAGCTTGT 59.023 50.000 0.00 0.00 0.00 3.16
184 185 2.099141 TTGGACATTCGAGGAGCTTG 57.901 50.000 0.00 0.00 0.00 4.01
185 186 2.039084 AGTTTGGACATTCGAGGAGCTT 59.961 45.455 0.00 0.00 0.00 3.74
186 187 1.625818 AGTTTGGACATTCGAGGAGCT 59.374 47.619 0.00 0.00 0.00 4.09
187 188 2.100605 AGTTTGGACATTCGAGGAGC 57.899 50.000 0.00 0.00 0.00 4.70
188 189 3.664107 TGAAGTTTGGACATTCGAGGAG 58.336 45.455 0.00 0.00 0.00 3.69
189 190 3.762407 TGAAGTTTGGACATTCGAGGA 57.238 42.857 0.00 0.00 0.00 3.71
190 191 6.494893 TTTATGAAGTTTGGACATTCGAGG 57.505 37.500 0.00 0.00 0.00 4.63
191 192 8.970691 AATTTTATGAAGTTTGGACATTCGAG 57.029 30.769 0.00 0.00 0.00 4.04
192 193 9.757227 AAAATTTTATGAAGTTTGGACATTCGA 57.243 25.926 0.37 0.00 0.00 3.71
193 194 9.796062 CAAAATTTTATGAAGTTTGGACATTCG 57.204 29.630 2.44 0.00 0.00 3.34
194 195 9.597999 GCAAAATTTTATGAAGTTTGGACATTC 57.402 29.630 2.44 0.00 0.00 2.67
195 196 9.118300 TGCAAAATTTTATGAAGTTTGGACATT 57.882 25.926 2.44 0.00 0.00 2.71
196 197 8.674263 TGCAAAATTTTATGAAGTTTGGACAT 57.326 26.923 2.44 0.00 0.00 3.06
197 198 8.557864 CATGCAAAATTTTATGAAGTTTGGACA 58.442 29.630 2.44 8.10 0.00 4.02
198 199 8.016801 CCATGCAAAATTTTATGAAGTTTGGAC 58.983 33.333 13.10 4.29 0.00 4.02
199 200 7.935755 TCCATGCAAAATTTTATGAAGTTTGGA 59.064 29.630 13.10 12.73 0.00 3.53
200 201 8.097078 TCCATGCAAAATTTTATGAAGTTTGG 57.903 30.769 13.10 8.03 0.00 3.28
204 205 9.504708 TGAATTCCATGCAAAATTTTATGAAGT 57.495 25.926 13.10 7.23 0.00 3.01
205 206 9.763465 GTGAATTCCATGCAAAATTTTATGAAG 57.237 29.630 13.10 0.00 0.00 3.02
206 207 8.441608 CGTGAATTCCATGCAAAATTTTATGAA 58.558 29.630 13.10 8.10 0.00 2.57
207 208 7.961855 CGTGAATTCCATGCAAAATTTTATGA 58.038 30.769 13.10 0.80 0.00 2.15
220 221 1.399440 CTCCTGTGCGTGAATTCCATG 59.601 52.381 2.27 0.00 34.90 3.66
221 222 1.742761 CTCCTGTGCGTGAATTCCAT 58.257 50.000 2.27 0.00 0.00 3.41
222 223 0.955428 GCTCCTGTGCGTGAATTCCA 60.955 55.000 2.27 0.00 0.00 3.53
223 224 0.955428 TGCTCCTGTGCGTGAATTCC 60.955 55.000 2.27 0.00 35.36 3.01
224 225 1.063174 GATGCTCCTGTGCGTGAATTC 59.937 52.381 0.00 0.00 35.36 2.17
225 226 1.089920 GATGCTCCTGTGCGTGAATT 58.910 50.000 0.00 0.00 35.36 2.17
226 227 0.251354 AGATGCTCCTGTGCGTGAAT 59.749 50.000 0.00 0.00 35.36 2.57
227 228 0.035317 AAGATGCTCCTGTGCGTGAA 59.965 50.000 0.00 0.00 35.36 3.18
228 229 0.671472 CAAGATGCTCCTGTGCGTGA 60.671 55.000 0.00 0.00 35.36 4.35
229 230 1.792301 CAAGATGCTCCTGTGCGTG 59.208 57.895 0.00 0.00 35.36 5.34
230 231 2.037136 GCAAGATGCTCCTGTGCGT 61.037 57.895 0.00 0.00 40.96 5.24
231 232 2.036571 TGCAAGATGCTCCTGTGCG 61.037 57.895 3.78 0.00 45.31 5.34
232 233 1.505353 GTGCAAGATGCTCCTGTGC 59.495 57.895 3.78 0.00 45.31 4.57
238 239 2.798976 TTTTGTGGTGCAAGATGCTC 57.201 45.000 3.78 0.00 45.31 4.26
288 289 8.028938 GGCATGAACAGTACAGTGATTTAAAAT 58.971 33.333 0.00 0.00 0.00 1.82
289 290 7.367285 GGCATGAACAGTACAGTGATTTAAAA 58.633 34.615 0.00 0.00 0.00 1.52
290 291 6.072175 GGGCATGAACAGTACAGTGATTTAAA 60.072 38.462 0.00 0.00 0.00 1.52
291 292 5.414454 GGGCATGAACAGTACAGTGATTTAA 59.586 40.000 0.00 0.00 0.00 1.52
292 293 4.941263 GGGCATGAACAGTACAGTGATTTA 59.059 41.667 0.00 0.00 0.00 1.40
293 294 3.758554 GGGCATGAACAGTACAGTGATTT 59.241 43.478 0.00 0.00 0.00 2.17
294 295 3.347216 GGGCATGAACAGTACAGTGATT 58.653 45.455 0.00 0.00 0.00 2.57
295 296 2.677902 CGGGCATGAACAGTACAGTGAT 60.678 50.000 0.00 0.00 0.00 3.06
296 297 1.337728 CGGGCATGAACAGTACAGTGA 60.338 52.381 0.00 0.00 0.00 3.41
297 298 1.078709 CGGGCATGAACAGTACAGTG 58.921 55.000 0.00 0.00 0.00 3.66
298 299 0.036388 CCGGGCATGAACAGTACAGT 60.036 55.000 0.00 0.00 0.00 3.55
299 300 0.744414 CCCGGGCATGAACAGTACAG 60.744 60.000 8.08 0.00 0.00 2.74
300 301 1.298340 CCCGGGCATGAACAGTACA 59.702 57.895 8.08 0.00 0.00 2.90
301 302 2.112815 GCCCGGGCATGAACAGTAC 61.113 63.158 40.73 5.45 41.49 2.73
302 303 2.252072 GAGCCCGGGCATGAACAGTA 62.252 60.000 45.13 0.00 44.88 2.74
303 304 3.628646 GAGCCCGGGCATGAACAGT 62.629 63.158 45.13 24.25 44.88 3.55
304 305 2.825836 GAGCCCGGGCATGAACAG 60.826 66.667 45.13 6.17 44.88 3.16
305 306 2.891941 GATGAGCCCGGGCATGAACA 62.892 60.000 45.13 32.49 44.88 3.18
306 307 2.124151 ATGAGCCCGGGCATGAAC 60.124 61.111 45.13 28.55 44.88 3.18
307 308 2.192979 GATGAGCCCGGGCATGAA 59.807 61.111 45.13 27.69 44.88 2.57
308 309 2.769621 AGATGAGCCCGGGCATGA 60.770 61.111 45.13 28.90 44.88 3.07
309 310 2.593725 CAGATGAGCCCGGGCATG 60.594 66.667 45.13 29.32 44.88 4.06
310 311 2.769621 TCAGATGAGCCCGGGCAT 60.770 61.111 45.13 31.90 44.88 4.40
311 312 3.473647 CTCAGATGAGCCCGGGCA 61.474 66.667 45.13 28.44 44.88 5.36
319 320 1.446791 GCTCCCAGGCTCAGATGAG 59.553 63.158 5.45 5.45 44.75 2.90
320 321 2.068821 GGCTCCCAGGCTCAGATGA 61.069 63.158 0.00 0.00 37.85 2.92
321 322 1.918467 TTGGCTCCCAGGCTCAGATG 61.918 60.000 0.00 0.00 41.96 2.90
322 323 1.210204 TTTGGCTCCCAGGCTCAGAT 61.210 55.000 0.00 0.00 41.96 2.90
323 324 1.210204 ATTTGGCTCCCAGGCTCAGA 61.210 55.000 0.00 0.00 41.96 3.27
324 325 0.750911 GATTTGGCTCCCAGGCTCAG 60.751 60.000 0.00 0.00 41.96 3.35
325 326 1.304282 GATTTGGCTCCCAGGCTCA 59.696 57.895 0.00 0.00 41.96 4.26
326 327 1.821332 CGATTTGGCTCCCAGGCTC 60.821 63.158 0.00 0.00 41.96 4.70
327 328 2.273449 CGATTTGGCTCCCAGGCT 59.727 61.111 0.00 0.00 41.96 4.58
328 329 3.521796 GCGATTTGGCTCCCAGGC 61.522 66.667 0.00 0.00 41.77 4.85
329 330 2.117156 CAGCGATTTGGCTCCCAGG 61.117 63.158 0.00 0.00 42.53 4.45
330 331 2.768492 GCAGCGATTTGGCTCCCAG 61.768 63.158 0.00 0.00 42.53 4.45
331 332 2.751436 GCAGCGATTTGGCTCCCA 60.751 61.111 0.00 0.00 42.53 4.37
332 333 2.439156 AGCAGCGATTTGGCTCCC 60.439 61.111 0.00 0.00 42.53 4.30
333 334 3.105659 GAGCAGCGATTTGGCTCC 58.894 61.111 0.30 0.00 46.35 4.70
335 336 0.107312 ATGAGAGCAGCGATTTGGCT 60.107 50.000 0.00 0.00 46.13 4.75
336 337 0.029035 CATGAGAGCAGCGATTTGGC 59.971 55.000 0.00 0.00 0.00 4.52
337 338 1.660167 TCATGAGAGCAGCGATTTGG 58.340 50.000 0.00 0.00 0.00 3.28
338 339 3.752412 TTTCATGAGAGCAGCGATTTG 57.248 42.857 0.00 0.00 0.00 2.32
339 340 5.587844 ACTTATTTCATGAGAGCAGCGATTT 59.412 36.000 0.00 0.00 0.00 2.17
340 341 5.121811 ACTTATTTCATGAGAGCAGCGATT 58.878 37.500 0.00 0.00 0.00 3.34
341 342 4.701765 ACTTATTTCATGAGAGCAGCGAT 58.298 39.130 0.00 0.00 0.00 4.58
342 343 4.128925 ACTTATTTCATGAGAGCAGCGA 57.871 40.909 0.00 0.00 0.00 4.93
343 344 4.569966 AGAACTTATTTCATGAGAGCAGCG 59.430 41.667 0.00 0.00 36.57 5.18
344 345 6.434018 AAGAACTTATTTCATGAGAGCAGC 57.566 37.500 0.00 0.00 36.57 5.25
345 346 8.266392 AGAAAGAACTTATTTCATGAGAGCAG 57.734 34.615 10.69 0.00 38.79 4.24
346 347 8.099537 AGAGAAAGAACTTATTTCATGAGAGCA 58.900 33.333 10.69 0.00 38.79 4.26
347 348 8.389603 CAGAGAAAGAACTTATTTCATGAGAGC 58.610 37.037 10.69 0.00 38.79 4.09
348 349 8.389603 GCAGAGAAAGAACTTATTTCATGAGAG 58.610 37.037 10.69 0.00 38.79 3.20
349 350 7.879677 TGCAGAGAAAGAACTTATTTCATGAGA 59.120 33.333 10.69 0.00 38.79 3.27
350 351 7.961827 GTGCAGAGAAAGAACTTATTTCATGAG 59.038 37.037 10.69 0.92 38.79 2.90
351 352 7.663081 AGTGCAGAGAAAGAACTTATTTCATGA 59.337 33.333 10.69 0.00 38.79 3.07
352 353 7.749570 CAGTGCAGAGAAAGAACTTATTTCATG 59.250 37.037 10.69 9.53 38.79 3.07
353 354 7.446625 ACAGTGCAGAGAAAGAACTTATTTCAT 59.553 33.333 10.69 0.00 38.79 2.57
354 355 6.767902 ACAGTGCAGAGAAAGAACTTATTTCA 59.232 34.615 10.69 0.00 38.79 2.69
355 356 7.195839 ACAGTGCAGAGAAAGAACTTATTTC 57.804 36.000 1.29 1.29 37.00 2.17
356 357 8.677148 TTACAGTGCAGAGAAAGAACTTATTT 57.323 30.769 0.00 0.00 0.00 1.40
357 358 8.854614 ATTACAGTGCAGAGAAAGAACTTATT 57.145 30.769 0.00 0.00 0.00 1.40
358 359 8.317679 AGATTACAGTGCAGAGAAAGAACTTAT 58.682 33.333 0.00 0.00 0.00 1.73
359 360 7.600375 CAGATTACAGTGCAGAGAAAGAACTTA 59.400 37.037 0.00 0.00 0.00 2.24
360 361 6.426328 CAGATTACAGTGCAGAGAAAGAACTT 59.574 38.462 0.00 0.00 0.00 2.66
361 362 5.931146 CAGATTACAGTGCAGAGAAAGAACT 59.069 40.000 0.00 0.00 0.00 3.01
362 363 5.390356 GCAGATTACAGTGCAGAGAAAGAAC 60.390 44.000 0.00 0.00 39.62 3.01
363 364 4.692625 GCAGATTACAGTGCAGAGAAAGAA 59.307 41.667 0.00 0.00 39.62 2.52
364 365 4.020751 AGCAGATTACAGTGCAGAGAAAGA 60.021 41.667 0.00 0.00 42.47 2.52
365 366 4.252073 AGCAGATTACAGTGCAGAGAAAG 58.748 43.478 0.00 0.00 42.47 2.62
366 367 4.277515 AGCAGATTACAGTGCAGAGAAA 57.722 40.909 0.00 0.00 42.47 2.52
367 368 3.969287 AGCAGATTACAGTGCAGAGAA 57.031 42.857 0.00 0.00 42.47 2.87
368 369 4.706962 TCTTAGCAGATTACAGTGCAGAGA 59.293 41.667 0.00 0.00 42.47 3.10
369 370 5.003692 TCTTAGCAGATTACAGTGCAGAG 57.996 43.478 0.00 0.00 42.47 3.35
370 371 5.604758 ATCTTAGCAGATTACAGTGCAGA 57.395 39.130 0.00 0.00 42.47 4.26
371 372 5.694006 GGTATCTTAGCAGATTACAGTGCAG 59.306 44.000 0.00 0.00 42.47 4.41
372 373 5.453339 GGGTATCTTAGCAGATTACAGTGCA 60.453 44.000 0.00 0.00 42.47 4.57
373 374 4.991687 GGGTATCTTAGCAGATTACAGTGC 59.008 45.833 0.00 0.00 40.53 4.40
374 375 6.266558 AGAGGGTATCTTAGCAGATTACAGTG 59.733 42.308 0.00 0.00 40.53 3.66
375 376 6.377912 AGAGGGTATCTTAGCAGATTACAGT 58.622 40.000 0.00 0.00 40.53 3.55
376 377 6.909550 AGAGGGTATCTTAGCAGATTACAG 57.090 41.667 0.00 0.00 40.53 2.74
436 441 2.279851 TGTTCACACAGCGTCCCG 60.280 61.111 0.00 0.00 0.00 5.14
454 459 7.254932 GGGCTATTCTATTTCTGACATGACAAC 60.255 40.741 0.00 0.00 0.00 3.32
469 474 3.265479 GGAAGATGGCAGGGCTATTCTAT 59.735 47.826 0.00 0.00 27.76 1.98
478 483 1.746615 CGTGTGGAAGATGGCAGGG 60.747 63.158 0.00 0.00 0.00 4.45
494 499 1.444250 TGGGACTCTTTCGCAACGT 59.556 52.632 0.00 0.00 43.87 3.99
500 505 2.076863 GATTGGTGTGGGACTCTTTCG 58.923 52.381 0.00 0.00 0.00 3.46
523 528 0.764271 TCAACACAGCCTCCATGACA 59.236 50.000 0.00 0.00 0.00 3.58
541 546 7.908230 TGCAAAAATTCTTCAATCAACAGTTC 58.092 30.769 0.00 0.00 0.00 3.01
542 547 7.765360 TCTGCAAAAATTCTTCAATCAACAGTT 59.235 29.630 0.00 0.00 0.00 3.16
543 548 7.267128 TCTGCAAAAATTCTTCAATCAACAGT 58.733 30.769 0.00 0.00 0.00 3.55
544 549 7.703298 TCTGCAAAAATTCTTCAATCAACAG 57.297 32.000 0.00 0.00 0.00 3.16
545 550 8.389603 GTTTCTGCAAAAATTCTTCAATCAACA 58.610 29.630 0.00 0.00 0.00 3.33
546 551 8.606602 AGTTTCTGCAAAAATTCTTCAATCAAC 58.393 29.630 0.00 0.00 0.00 3.18
547 552 8.721019 AGTTTCTGCAAAAATTCTTCAATCAA 57.279 26.923 0.00 0.00 0.00 2.57
548 553 8.605746 CAAGTTTCTGCAAAAATTCTTCAATCA 58.394 29.630 0.00 0.00 0.00 2.57
595 604 1.071542 TGAAAAGGATCTCGGTGCACA 59.928 47.619 20.43 0.00 0.00 4.57
602 611 6.073058 TGTCACTGAAAATGAAAAGGATCTCG 60.073 38.462 0.00 0.00 0.00 4.04
615 688 9.950680 CTGTTTGTATTAACTGTCACTGAAAAT 57.049 29.630 0.00 0.00 0.00 1.82
618 691 7.766738 TCACTGTTTGTATTAACTGTCACTGAA 59.233 33.333 0.00 0.00 37.88 3.02
674 750 1.528129 CTTGTTCTTCCACCTCTGCC 58.472 55.000 0.00 0.00 0.00 4.85
716 793 2.838637 TTTCTTTCCACACCTTGGGT 57.161 45.000 0.00 0.00 46.92 4.51
742 819 5.008911 CCGATTTGATTCATGCCAACATAGA 59.991 40.000 0.00 0.00 33.67 1.98
766 845 6.647067 GTCAGCTGGTCCTATATATGTCAAAC 59.353 42.308 15.13 0.00 0.00 2.93
807 886 2.536365 GTCGCTGGATCGTTAATGTGA 58.464 47.619 0.00 0.00 0.00 3.58
855 934 2.202932 GAGCCGCATGGACGTGAT 60.203 61.111 0.00 0.00 37.49 3.06
878 969 1.672030 CTCGCATTGGTCTGCCACA 60.672 57.895 0.00 0.00 46.01 4.17
932 1023 3.461773 CTCGCTGGTGACCGGGAT 61.462 66.667 13.20 0.00 0.00 3.85
1155 1388 0.264359 AGGAGCATGGAGGAGTAGCT 59.736 55.000 0.00 0.00 38.43 3.32
1219 1467 1.882989 GCTGAGACGAGCTTGTCCCT 61.883 60.000 27.31 12.60 39.77 4.20
1272 1532 1.001181 GTAGTGTTACTTGGTGGCGGA 59.999 52.381 0.00 0.00 0.00 5.54
1274 1534 2.066262 CAGTAGTGTTACTTGGTGGCG 58.934 52.381 0.00 0.00 38.05 5.69
1284 1544 5.794726 TGGACTTGCTAACAGTAGTGTTA 57.205 39.130 19.58 19.58 45.48 2.41
1310 1579 3.330720 GGGAGGTGGAGGTGGTGG 61.331 72.222 0.00 0.00 0.00 4.61
1349 1621 9.747898 AAACTGGTATCTTGTAAAACCATATGA 57.252 29.630 3.65 0.00 41.04 2.15
1360 1632 7.814107 CACGGTAGTAAAAACTGGTATCTTGTA 59.186 37.037 0.00 0.00 0.00 2.41
1406 1687 1.770749 TTTGGGGTCGACGATTGGGT 61.771 55.000 9.92 0.00 0.00 4.51
1407 1688 1.003112 TTTGGGGTCGACGATTGGG 60.003 57.895 9.92 0.00 0.00 4.12
1408 1689 1.303091 GGTTTGGGGTCGACGATTGG 61.303 60.000 9.92 0.00 0.00 3.16
1409 1690 1.303091 GGGTTTGGGGTCGACGATTG 61.303 60.000 9.92 0.00 0.00 2.67
1410 1691 1.002990 GGGTTTGGGGTCGACGATT 60.003 57.895 9.92 0.00 0.00 3.34
1411 1692 1.770749 TTGGGTTTGGGGTCGACGAT 61.771 55.000 9.92 0.00 0.00 3.73
1412 1693 2.441675 TTGGGTTTGGGGTCGACGA 61.442 57.895 9.92 0.00 0.00 4.20
1413 1694 2.111460 TTGGGTTTGGGGTCGACG 59.889 61.111 9.92 0.00 0.00 5.12
1414 1695 1.900016 GGTTGGGTTTGGGGTCGAC 60.900 63.158 7.13 7.13 0.00 4.20
1480 1779 5.431765 AGTGGACCAGATTACAACATCATC 58.568 41.667 0.00 0.00 0.00 2.92
1602 1943 2.579410 AGCTTTCCCATAACCGTTGT 57.421 45.000 0.00 0.00 0.00 3.32
2775 3161 2.595386 GCACCATCAAGCCTTTTTACG 58.405 47.619 0.00 0.00 0.00 3.18
3009 3411 3.508402 GCAAGTAGGATAGTCCTCTAGCC 59.492 52.174 0.97 0.00 45.66 3.93
3091 3493 7.825270 TGCAATTTTAGGAGAAAATGATGCATT 59.175 29.630 13.90 0.00 37.92 3.56
3150 3552 7.306213 TGAATGTAGTCAAGACTCGACTAAAG 58.694 38.462 4.82 0.00 45.15 1.85
3156 3558 4.396478 CCTCTGAATGTAGTCAAGACTCGA 59.604 45.833 5.91 0.00 42.54 4.04
3321 3744 4.466828 GGAAATATTCAACATGATCGCCG 58.533 43.478 0.00 0.00 0.00 6.46
3346 3775 1.166129 AGCTTGCTGATGACTTGCAG 58.834 50.000 0.00 0.00 38.01 4.41
3423 3852 2.310538 CAAACCCTCTCAGCCTGTTTT 58.689 47.619 0.00 0.00 0.00 2.43
3546 3975 1.734707 GCTGCAAGTAGCTTTGGCATG 60.735 52.381 2.78 0.00 45.94 4.06
3650 4092 8.075574 CAGTACACAATGCAACTTCAAGATTTA 58.924 33.333 0.00 0.00 0.00 1.40
3732 4179 3.942748 AGTTAAGAGACACCACGCAAAAA 59.057 39.130 0.00 0.00 0.00 1.94
3733 4180 3.311322 CAGTTAAGAGACACCACGCAAAA 59.689 43.478 0.00 0.00 0.00 2.44
3734 4181 2.869801 CAGTTAAGAGACACCACGCAAA 59.130 45.455 0.00 0.00 0.00 3.68
3735 4182 2.101750 TCAGTTAAGAGACACCACGCAA 59.898 45.455 0.00 0.00 0.00 4.85
3736 4183 1.684450 TCAGTTAAGAGACACCACGCA 59.316 47.619 0.00 0.00 0.00 5.24
3737 4184 2.433868 TCAGTTAAGAGACACCACGC 57.566 50.000 0.00 0.00 0.00 5.34
3738 4185 6.792326 TGTATATCAGTTAAGAGACACCACG 58.208 40.000 0.00 0.00 0.00 4.94
3770 4217 4.164796 TCAGCTAGTTTGATGGATCCATGT 59.835 41.667 32.05 10.21 36.70 3.21
3839 4286 1.896220 TGACTGCACCAATGACTTCC 58.104 50.000 0.00 0.00 0.00 3.46
3846 4293 0.392863 TGCGCTATGACTGCACCAAT 60.393 50.000 9.73 0.00 32.86 3.16
3858 4305 4.185413 CACAAGTCGGTGCGCTAT 57.815 55.556 9.73 0.00 31.10 2.97
3905 4352 1.080434 GCGGAGATAGATCACGGCC 60.080 63.158 0.00 0.00 37.61 6.13
3950 5471 0.462789 AGTTCGTTGTTCTCACCGGT 59.537 50.000 0.00 0.00 30.63 5.28
3963 5484 1.598130 GAAGTGGCCAGCAGTTCGT 60.598 57.895 5.11 0.00 0.00 3.85
4060 5581 4.097361 GGTGGAGGGGTCGAAGCC 62.097 72.222 0.00 0.00 34.31 4.35
4223 5749 9.516314 AAAAGTGCTCAGTACATTTCTAAAAAC 57.484 29.630 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.