Multiple sequence alignment - TraesCS3D01G072100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G072100 chr3D 100.000 4511 0 0 1 4511 32277898 32282408 0.000000e+00 8331
1 TraesCS3D01G072100 chr3D 86.543 3017 348 34 610 3590 32299197 32302191 0.000000e+00 3269
2 TraesCS3D01G072100 chr3D 77.838 185 32 8 1 183 32299007 32299184 6.170000e-19 106
3 TraesCS3D01G072100 chr3A 87.320 3825 427 31 489 4276 44638994 44642797 0.000000e+00 4324
4 TraesCS3D01G072100 chr3A 85.847 4077 448 73 445 4442 44709285 44713311 0.000000e+00 4213
5 TraesCS3D01G072100 chr3A 92.657 286 13 7 4 286 44709005 44709285 5.430000e-109 405
6 TraesCS3D01G072100 chr3B 85.318 3140 402 29 489 3590 54793786 54796904 0.000000e+00 3190
7 TraesCS3D01G072100 chr3B 83.838 1751 254 23 490 2223 54784309 54786047 0.000000e+00 1639
8 TraesCS3D01G072100 chr3B 89.151 1272 127 6 2329 3590 54786078 54787348 0.000000e+00 1574
9 TraesCS3D01G072100 chr3B 81.421 915 116 28 3568 4442 54796918 54797818 0.000000e+00 699
10 TraesCS3D01G072100 chr3B 80.610 918 122 32 3568 4442 54787362 54788266 0.000000e+00 658
11 TraesCS3D01G072100 chr5D 81.094 2925 452 63 636 3531 104257903 104255051 0.000000e+00 2244
12 TraesCS3D01G072100 chr5D 85.012 1301 178 7 981 2271 425838914 425840207 0.000000e+00 1306
13 TraesCS3D01G072100 chr5D 100.000 169 0 0 280 448 528841824 528841992 3.390000e-81 313
14 TraesCS3D01G072100 chr5D 98.295 176 2 1 274 448 466142529 466142354 1.580000e-79 307
15 TraesCS3D01G072100 chr4D 80.669 2959 488 47 596 3531 1994950 1997847 0.000000e+00 2218
16 TraesCS3D01G072100 chr4D 99.415 171 1 0 278 448 509649095 509649265 1.220000e-80 311
17 TraesCS3D01G072100 chr4D 95.722 187 7 1 275 460 95133850 95133664 2.640000e-77 300
18 TraesCS3D01G072100 chrUn 80.456 2850 432 77 722 3521 47549306 47546532 0.000000e+00 2061
19 TraesCS3D01G072100 chr5B 85.290 1346 171 14 944 2271 515184045 515185381 0.000000e+00 1363
20 TraesCS3D01G072100 chr5B 82.110 1308 189 34 2232 3531 113676934 113675664 0.000000e+00 1077
21 TraesCS3D01G072100 chr5A 84.547 1346 181 16 944 2271 540051929 540053265 0.000000e+00 1308
22 TraesCS3D01G072100 chr2D 99.419 172 1 0 277 448 44329672 44329501 3.390000e-81 313
23 TraesCS3D01G072100 chr7D 97.297 185 1 2 265 448 100233993 100234174 1.220000e-80 311
24 TraesCS3D01G072100 chr7D 98.844 173 2 0 283 455 599804345 599804173 4.380000e-80 309
25 TraesCS3D01G072100 chr7D 95.312 192 5 4 266 456 586748744 586748556 7.330000e-78 302
26 TraesCS3D01G072100 chr6D 98.305 177 1 2 276 451 472748234 472748059 4.380000e-80 309


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G072100 chr3D 32277898 32282408 4510 False 8331.000000 8331 100.0000 1 4511 1 chr3D.!!$F1 4510
1 TraesCS3D01G072100 chr3D 32299007 32302191 3184 False 1687.500000 3269 82.1905 1 3590 2 chr3D.!!$F2 3589
2 TraesCS3D01G072100 chr3A 44638994 44642797 3803 False 4324.000000 4324 87.3200 489 4276 1 chr3A.!!$F1 3787
3 TraesCS3D01G072100 chr3A 44709005 44713311 4306 False 2309.000000 4213 89.2520 4 4442 2 chr3A.!!$F2 4438
4 TraesCS3D01G072100 chr3B 54793786 54797818 4032 False 1944.500000 3190 83.3695 489 4442 2 chr3B.!!$F2 3953
5 TraesCS3D01G072100 chr3B 54784309 54788266 3957 False 1290.333333 1639 84.5330 490 4442 3 chr3B.!!$F1 3952
6 TraesCS3D01G072100 chr5D 104255051 104257903 2852 True 2244.000000 2244 81.0940 636 3531 1 chr5D.!!$R1 2895
7 TraesCS3D01G072100 chr5D 425838914 425840207 1293 False 1306.000000 1306 85.0120 981 2271 1 chr5D.!!$F1 1290
8 TraesCS3D01G072100 chr4D 1994950 1997847 2897 False 2218.000000 2218 80.6690 596 3531 1 chr4D.!!$F1 2935
9 TraesCS3D01G072100 chrUn 47546532 47549306 2774 True 2061.000000 2061 80.4560 722 3521 1 chrUn.!!$R1 2799
10 TraesCS3D01G072100 chr5B 515184045 515185381 1336 False 1363.000000 1363 85.2900 944 2271 1 chr5B.!!$F1 1327
11 TraesCS3D01G072100 chr5B 113675664 113676934 1270 True 1077.000000 1077 82.1100 2232 3531 1 chr5B.!!$R1 1299
12 TraesCS3D01G072100 chr5A 540051929 540053265 1336 False 1308.000000 1308 84.5470 944 2271 1 chr5A.!!$F1 1327

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
40 41 0.254747 TTCATTCATCCACGACCCCC 59.745 55.0 0.0 0.0 0.00 5.40 F
1151 1209 0.250901 GGCCAAGGCGGTGATGATAT 60.251 55.0 4.8 0.0 43.06 1.63 F
1892 1980 0.039256 CCAAATGCACAGGACAACGG 60.039 55.0 0.0 0.0 0.00 4.44 F
2273 2361 0.316204 CCACTTCTGCAAAAGCCTGG 59.684 55.0 0.0 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1225 1289 0.037232 GGGAGTGAAGGGTCTTCGTG 60.037 60.0 3.62 0.00 0.00 4.35 R
2234 2322 0.034670 AGGATTGAGCCCAGCAAGAC 60.035 55.0 0.00 0.00 0.00 3.01 R
3418 3551 0.108138 GGTCTGTCTGAATCCACCGG 60.108 60.0 0.00 0.00 0.00 5.28 R
3873 4072 0.250038 CTGGATATCCACTGGGCACG 60.250 60.0 20.98 4.69 42.01 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 0.254747 TTCATTCATCCACGACCCCC 59.745 55.000 0.00 0.00 0.00 5.40
101 102 9.952030 TTTTCCTTCTTAGATTGTTTGGTTTTT 57.048 25.926 0.00 0.00 0.00 1.94
180 182 5.176774 GGGAAACGTCAAAAATAAAAGGCAG 59.823 40.000 0.00 0.00 0.00 4.85
181 183 5.751509 GGAAACGTCAAAAATAAAAGGCAGT 59.248 36.000 0.00 0.00 0.00 4.40
183 185 7.435784 GGAAACGTCAAAAATAAAAGGCAGTTA 59.564 33.333 0.00 0.00 0.00 2.24
185 187 7.266922 ACGTCAAAAATAAAAGGCAGTTAGA 57.733 32.000 0.00 0.00 0.00 2.10
187 189 7.136119 CGTCAAAAATAAAAGGCAGTTAGACA 58.864 34.615 0.00 0.00 0.00 3.41
230 233 0.396435 TGAGCATTCAGGACGGTTGT 59.604 50.000 0.00 0.00 0.00 3.32
241 244 2.621526 AGGACGGTTGTTCCATGTTTTC 59.378 45.455 0.00 0.00 35.57 2.29
246 249 5.483811 ACGGTTGTTCCATGTTTTCTTTTT 58.516 33.333 0.00 0.00 35.57 1.94
247 250 5.579119 ACGGTTGTTCCATGTTTTCTTTTTC 59.421 36.000 0.00 0.00 35.57 2.29
249 252 6.019881 CGGTTGTTCCATGTTTTCTTTTTCTC 60.020 38.462 0.00 0.00 35.57 2.87
251 254 7.549134 GGTTGTTCCATGTTTTCTTTTTCTCTT 59.451 33.333 0.00 0.00 35.97 2.85
252 255 8.595533 GTTGTTCCATGTTTTCTTTTTCTCTTC 58.404 33.333 0.00 0.00 0.00 2.87
253 256 8.066612 TGTTCCATGTTTTCTTTTTCTCTTCT 57.933 30.769 0.00 0.00 0.00 2.85
254 257 8.531146 TGTTCCATGTTTTCTTTTTCTCTTCTT 58.469 29.630 0.00 0.00 0.00 2.52
286 289 9.601217 ACTTCTTCATCCACAAATATGTACTAC 57.399 33.333 0.00 0.00 37.82 2.73
287 290 9.823647 CTTCTTCATCCACAAATATGTACTACT 57.176 33.333 0.00 0.00 37.82 2.57
288 291 9.817809 TTCTTCATCCACAAATATGTACTACTC 57.182 33.333 0.00 0.00 37.82 2.59
289 292 8.421784 TCTTCATCCACAAATATGTACTACTCC 58.578 37.037 0.00 0.00 37.82 3.85
290 293 7.062749 TCATCCACAAATATGTACTACTCCC 57.937 40.000 0.00 0.00 37.82 4.30
291 294 6.844388 TCATCCACAAATATGTACTACTCCCT 59.156 38.462 0.00 0.00 37.82 4.20
292 295 6.726490 TCCACAAATATGTACTACTCCCTC 57.274 41.667 0.00 0.00 37.82 4.30
293 296 5.601313 TCCACAAATATGTACTACTCCCTCC 59.399 44.000 0.00 0.00 37.82 4.30
294 297 5.509163 CCACAAATATGTACTACTCCCTCCG 60.509 48.000 0.00 0.00 37.82 4.63
295 298 5.068723 CACAAATATGTACTACTCCCTCCGT 59.931 44.000 0.00 0.00 37.82 4.69
296 299 5.659971 ACAAATATGTACTACTCCCTCCGTT 59.340 40.000 0.00 0.00 38.24 4.44
297 300 6.183360 ACAAATATGTACTACTCCCTCCGTTC 60.183 42.308 0.00 0.00 38.24 3.95
298 301 2.134789 TGTACTACTCCCTCCGTTCC 57.865 55.000 0.00 0.00 0.00 3.62
299 302 1.637553 TGTACTACTCCCTCCGTTCCT 59.362 52.381 0.00 0.00 0.00 3.36
300 303 2.846206 TGTACTACTCCCTCCGTTCCTA 59.154 50.000 0.00 0.00 0.00 2.94
301 304 3.266772 TGTACTACTCCCTCCGTTCCTAA 59.733 47.826 0.00 0.00 0.00 2.69
302 305 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
303 306 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
304 307 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
305 308 4.892345 ACTACTCCCTCCGTTCCTAAATAC 59.108 45.833 0.00 0.00 0.00 1.89
306 309 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
307 310 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
308 311 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
309 312 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
310 313 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
311 314 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
312 315 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
313 316 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
314 317 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
315 318 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
316 319 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
317 320 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
318 321 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
319 322 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
320 323 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
321 324 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
322 325 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
323 326 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
325 328 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
326 329 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
327 330 6.959639 ACTTGTCTTTCTAGGCATTTCAAA 57.040 33.333 0.00 0.00 35.56 2.69
328 331 7.530426 ACTTGTCTTTCTAGGCATTTCAAAT 57.470 32.000 0.00 0.00 35.56 2.32
329 332 7.373493 ACTTGTCTTTCTAGGCATTTCAAATG 58.627 34.615 5.68 5.68 35.56 2.32
330 333 7.231317 ACTTGTCTTTCTAGGCATTTCAAATGA 59.769 33.333 14.65 0.00 35.56 2.57
331 334 7.523293 TGTCTTTCTAGGCATTTCAAATGAA 57.477 32.000 14.65 0.00 29.10 2.57
332 335 8.125978 TGTCTTTCTAGGCATTTCAAATGAAT 57.874 30.769 14.65 3.70 29.10 2.57
333 336 9.241919 TGTCTTTCTAGGCATTTCAAATGAATA 57.758 29.630 14.65 4.67 29.10 1.75
338 341 8.750515 TCTAGGCATTTCAAATGAATATCACA 57.249 30.769 14.65 0.00 33.54 3.58
339 342 9.358406 TCTAGGCATTTCAAATGAATATCACAT 57.642 29.630 14.65 0.00 33.54 3.21
342 345 8.077991 AGGCATTTCAAATGAATATCACATACG 58.922 33.333 14.65 0.00 33.54 3.06
343 346 7.326789 GGCATTTCAAATGAATATCACATACGG 59.673 37.037 14.65 0.00 33.54 4.02
344 347 8.075574 GCATTTCAAATGAATATCACATACGGA 58.924 33.333 14.65 0.00 33.54 4.69
347 350 9.119418 TTTCAAATGAATATCACATACGGATGT 57.881 29.630 7.68 7.68 39.20 3.06
348 351 9.771534 TTCAAATGAATATCACATACGGATGTA 57.228 29.630 14.23 0.00 44.82 2.29
349 352 9.942850 TCAAATGAATATCACATACGGATGTAT 57.057 29.630 14.23 10.02 44.82 2.29
390 393 7.036220 AGTGTAGATTCACTCATTTTACTCCG 58.964 38.462 0.00 0.00 44.07 4.63
391 394 6.812160 GTGTAGATTCACTCATTTTACTCCGT 59.188 38.462 0.00 0.00 35.68 4.69
392 395 7.972277 GTGTAGATTCACTCATTTTACTCCGTA 59.028 37.037 0.00 0.00 35.68 4.02
393 396 8.692710 TGTAGATTCACTCATTTTACTCCGTAT 58.307 33.333 0.00 0.00 0.00 3.06
394 397 8.969267 GTAGATTCACTCATTTTACTCCGTATG 58.031 37.037 0.00 0.00 0.00 2.39
395 398 7.556844 AGATTCACTCATTTTACTCCGTATGT 58.443 34.615 0.00 0.00 0.00 2.29
396 399 8.692710 AGATTCACTCATTTTACTCCGTATGTA 58.307 33.333 0.00 0.00 0.00 2.29
397 400 8.873215 ATTCACTCATTTTACTCCGTATGTAG 57.127 34.615 0.00 0.00 0.00 2.74
398 401 7.400599 TCACTCATTTTACTCCGTATGTAGT 57.599 36.000 0.00 0.00 0.00 2.73
399 402 7.478322 TCACTCATTTTACTCCGTATGTAGTC 58.522 38.462 0.00 0.00 0.00 2.59
400 403 7.121611 TCACTCATTTTACTCCGTATGTAGTCA 59.878 37.037 0.00 0.00 0.00 3.41
401 404 7.220300 CACTCATTTTACTCCGTATGTAGTCAC 59.780 40.741 0.00 0.00 0.00 3.67
402 405 7.122353 ACTCATTTTACTCCGTATGTAGTCACT 59.878 37.037 0.00 0.00 0.00 3.41
403 406 7.833786 TCATTTTACTCCGTATGTAGTCACTT 58.166 34.615 0.00 0.00 0.00 3.16
404 407 7.758076 TCATTTTACTCCGTATGTAGTCACTTG 59.242 37.037 0.00 0.00 0.00 3.16
405 408 6.579666 TTTACTCCGTATGTAGTCACTTGT 57.420 37.500 0.00 0.00 0.00 3.16
406 409 6.579666 TTACTCCGTATGTAGTCACTTGTT 57.420 37.500 0.00 0.00 0.00 2.83
407 410 4.806330 ACTCCGTATGTAGTCACTTGTTG 58.194 43.478 0.00 0.00 0.00 3.33
408 411 4.521639 ACTCCGTATGTAGTCACTTGTTGA 59.478 41.667 0.00 0.00 0.00 3.18
409 412 5.010314 ACTCCGTATGTAGTCACTTGTTGAA 59.990 40.000 0.00 0.00 35.39 2.69
410 413 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
411 414 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
412 415 6.367695 TCCGTATGTAGTCACTTGTTGAAATG 59.632 38.462 0.00 0.00 35.39 2.32
413 416 6.015504 CGTATGTAGTCACTTGTTGAAATGC 58.984 40.000 0.00 0.00 35.39 3.56
414 417 4.829064 TGTAGTCACTTGTTGAAATGCC 57.171 40.909 0.00 0.00 35.39 4.40
415 418 4.460263 TGTAGTCACTTGTTGAAATGCCT 58.540 39.130 0.00 0.00 35.39 4.75
416 419 5.616270 TGTAGTCACTTGTTGAAATGCCTA 58.384 37.500 0.00 0.00 35.39 3.93
417 420 5.700832 TGTAGTCACTTGTTGAAATGCCTAG 59.299 40.000 0.00 0.00 35.39 3.02
418 421 4.973168 AGTCACTTGTTGAAATGCCTAGA 58.027 39.130 0.00 0.00 35.39 2.43
419 422 5.376625 AGTCACTTGTTGAAATGCCTAGAA 58.623 37.500 0.00 0.00 35.39 2.10
420 423 5.827797 AGTCACTTGTTGAAATGCCTAGAAA 59.172 36.000 0.00 0.00 35.39 2.52
421 424 6.016777 AGTCACTTGTTGAAATGCCTAGAAAG 60.017 38.462 0.00 0.00 35.39 2.62
422 425 6.017109 GTCACTTGTTGAAATGCCTAGAAAGA 60.017 38.462 0.00 0.00 35.39 2.52
423 426 6.017109 TCACTTGTTGAAATGCCTAGAAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
424 427 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
425 428 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
426 429 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
427 430 5.827797 TGTTGAAATGCCTAGAAAGACAAGT 59.172 36.000 0.00 0.00 0.00 3.16
428 431 6.995686 TGTTGAAATGCCTAGAAAGACAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
429 432 7.665559 TGTTGAAATGCCTAGAAAGACAAGTAT 59.334 33.333 0.00 0.00 0.00 2.12
430 433 8.515414 GTTGAAATGCCTAGAAAGACAAGTATT 58.485 33.333 0.00 0.00 0.00 1.89
431 434 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
432 435 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
434 437 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
435 438 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
436 439 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
437 440 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
438 441 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
439 442 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
440 443 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
441 444 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
442 445 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
443 446 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
444 447 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
458 461 2.950975 CGGAGGGAGTACTTCTTACCTC 59.049 54.545 16.63 16.63 43.56 3.85
511 515 5.988287 TGTTATGTAACATGCTGGATCTCA 58.012 37.500 1.62 0.00 40.93 3.27
516 521 2.706339 ACATGCTGGATCTCACCTTC 57.294 50.000 0.00 0.00 0.00 3.46
623 639 8.354011 AGTGATCAGCGTTTGTCTATTTATAC 57.646 34.615 0.00 0.00 0.00 1.47
631 647 6.511282 GCGTTTGTCTATTTATACCTTCTGGC 60.511 42.308 0.00 0.00 36.63 4.85
634 650 5.597806 TGTCTATTTATACCTTCTGGCACG 58.402 41.667 0.00 0.00 36.63 5.34
643 659 1.247567 CTTCTGGCACGGTTTCCAAT 58.752 50.000 1.22 0.00 35.30 3.16
714 732 4.815269 AGCAGTGTTCTCTTACTCACATC 58.185 43.478 0.00 0.00 33.84 3.06
720 738 6.892456 AGTGTTCTCTTACTCACATCTGGATA 59.108 38.462 0.00 0.00 33.84 2.59
735 753 5.901413 TCTGGATATTCTGCCTTTCATCT 57.099 39.130 0.00 0.00 0.00 2.90
797 824 9.914131 CTGATATAACATTTCTTCTCCGTGATA 57.086 33.333 0.00 0.00 0.00 2.15
876 907 5.768980 AGATCCTCAATTTTCCTGACAGA 57.231 39.130 3.32 0.00 0.00 3.41
1036 1085 2.514803 CAACCCTTCCAGTTACCCTTG 58.485 52.381 0.00 0.00 0.00 3.61
1064 1116 4.502259 CCTCACACTGTTAGCTCTCTTGTT 60.502 45.833 0.00 0.00 0.00 2.83
1116 1168 1.684049 CTCTGGCCTCGTCCTCCTT 60.684 63.158 3.32 0.00 0.00 3.36
1142 1200 4.809496 AGCATCAGGCCAAGGCGG 62.809 66.667 5.01 0.00 46.50 6.13
1151 1209 0.250901 GGCCAAGGCGGTGATGATAT 60.251 55.000 4.80 0.00 43.06 1.63
1248 1312 0.494095 AAGACCCTTCACTCCCCTCT 59.506 55.000 0.00 0.00 0.00 3.69
1284 1348 0.445436 CTGCACGCATCTTCACTTCC 59.555 55.000 0.00 0.00 0.00 3.46
1369 1433 3.439129 GGTTGCTTACGGAAACTATGCTT 59.561 43.478 0.00 0.00 33.98 3.91
1375 1439 3.695830 ACGGAAACTATGCTTTCTCCA 57.304 42.857 0.00 0.00 31.76 3.86
1439 1503 9.199982 CTTAAATGACTTCAATGCTTCACAAAT 57.800 29.630 0.00 0.00 0.00 2.32
1444 1508 5.706916 ACTTCAATGCTTCACAAATAGCTG 58.293 37.500 0.00 0.00 38.22 4.24
1572 1642 2.938451 TGTCAATGGCATCGAGATTGTC 59.062 45.455 0.00 0.00 0.00 3.18
1614 1684 3.688185 CAGCAGCTGACACAAGATATGTT 59.312 43.478 20.43 0.00 34.95 2.71
1623 1699 6.054941 TGACACAAGATATGTTGGCGATAAT 58.945 36.000 16.24 0.00 41.46 1.28
1624 1700 6.542005 TGACACAAGATATGTTGGCGATAATT 59.458 34.615 16.24 0.00 41.46 1.40
1650 1726 6.715347 TCTCCATTCTCATTCGATACTGAA 57.285 37.500 0.00 0.00 0.00 3.02
1669 1745 2.409948 AACAAGCCTCCAGACTATGC 57.590 50.000 0.00 0.00 0.00 3.14
1681 1757 2.039418 AGACTATGCACCGGCTCAATA 58.961 47.619 0.00 0.00 41.91 1.90
1707 1783 2.263153 CGAAGCCATTTCCCGGTTT 58.737 52.632 0.00 0.00 31.82 3.27
1745 1824 1.033746 CGCTCATGGGCCAGTGATTT 61.034 55.000 13.12 0.00 0.00 2.17
1746 1825 1.746861 CGCTCATGGGCCAGTGATTTA 60.747 52.381 13.12 0.00 0.00 1.40
1749 1834 1.922447 TCATGGGCCAGTGATTTACCT 59.078 47.619 13.78 0.00 0.00 3.08
1830 1918 2.425143 CACCCACAGTGCTGGATTAT 57.575 50.000 11.87 0.00 40.28 1.28
1891 1979 0.664166 GCCAAATGCACAGGACAACG 60.664 55.000 5.17 0.00 40.77 4.10
1892 1980 0.039256 CCAAATGCACAGGACAACGG 60.039 55.000 0.00 0.00 0.00 4.44
1896 1984 0.606401 ATGCACAGGACAACGGGAAG 60.606 55.000 0.00 0.00 0.00 3.46
1962 2050 2.570135 CTCCTAAGGCTCCATTTCTGC 58.430 52.381 0.00 0.00 0.00 4.26
2077 2165 0.594110 GAGCGGAGGAATCGGTAGAG 59.406 60.000 0.00 0.00 38.50 2.43
2125 2213 1.338890 TGTTGGTTCCGGTCAGGTGA 61.339 55.000 0.00 0.00 41.99 4.02
2132 2220 0.320374 TCCGGTCAGGTGAACATGTC 59.680 55.000 0.00 0.00 41.99 3.06
2134 2222 1.014044 CGGTCAGGTGAACATGTCGG 61.014 60.000 0.00 0.00 0.00 4.79
2175 2263 8.794335 ATCTTTCAAGTAAACCAGAGTATTCC 57.206 34.615 0.00 0.00 0.00 3.01
2202 2290 5.045942 TGCAATACTGAATGGTCTTGAGGTA 60.046 40.000 0.00 0.00 0.00 3.08
2273 2361 0.316204 CCACTTCTGCAAAAGCCTGG 59.684 55.000 0.00 0.00 0.00 4.45
2291 2379 1.765904 TGGTGCGGATCTTAATAGGCA 59.234 47.619 0.00 0.00 0.00 4.75
2312 2400 4.737054 CAATCTAGCGGTGCAAGAAAATT 58.263 39.130 0.00 0.00 0.00 1.82
2320 2408 4.119136 CGGTGCAAGAAAATTCAAAGGTT 58.881 39.130 0.00 0.00 0.00 3.50
2325 2413 7.095649 GGTGCAAGAAAATTCAAAGGTTACATC 60.096 37.037 0.00 0.00 0.00 3.06
2326 2414 6.640499 TGCAAGAAAATTCAAAGGTTACATCG 59.360 34.615 0.00 0.00 0.00 3.84
2353 2462 1.597797 CGGTGGAACTACTGGCGGTA 61.598 60.000 5.96 5.96 36.74 4.02
2365 2474 3.016736 ACTGGCGGTATTTCTTTCATGG 58.983 45.455 0.00 0.00 0.00 3.66
2383 2492 1.879380 TGGTGATTGTCCTTTTCAGCG 59.121 47.619 0.00 0.00 39.97 5.18
2386 2495 0.796312 GATTGTCCTTTTCAGCGCGA 59.204 50.000 12.10 0.00 0.00 5.87
2420 2529 1.891150 ACGGAAGAAGGTAGCGAAGAA 59.109 47.619 0.00 0.00 0.00 2.52
2423 2532 3.933332 CGGAAGAAGGTAGCGAAGAATTT 59.067 43.478 0.00 0.00 0.00 1.82
2475 2590 3.884169 TGAACGCAAAAAGTCTACATGC 58.116 40.909 0.00 0.00 0.00 4.06
2497 2612 2.631418 TCTCGTCCGTCATTTCTCAC 57.369 50.000 0.00 0.00 0.00 3.51
2516 2631 5.357878 TCTCACTTGCAGAAATTCAACTTGT 59.642 36.000 0.00 0.00 0.00 3.16
2539 2654 4.828939 TCACCAAAGACTTTGATGAAGCAT 59.171 37.500 26.14 1.95 40.15 3.79
2586 2701 3.376540 GAATGTCTACAGTGGCGAGATC 58.623 50.000 0.00 0.00 0.00 2.75
2601 2716 2.670229 CGAGATCGACGGAAGGACAAAA 60.670 50.000 0.00 0.00 43.02 2.44
2625 2740 2.253603 GCAATCAAGCGATTCAACCAC 58.746 47.619 0.00 0.00 39.96 4.16
2640 2755 2.433970 CAACCACAAATCCCAACAAGGT 59.566 45.455 0.00 0.00 34.66 3.50
2766 2881 3.711190 TGTATGACTACATGGCTCATGGT 59.289 43.478 16.39 7.94 45.16 3.55
2803 2918 1.142060 TGTACAACACCAGGAACCCAG 59.858 52.381 0.00 0.00 0.00 4.45
2993 3108 3.681897 GCTAGTCCAGACATTGACAACAG 59.318 47.826 0.00 0.00 33.89 3.16
3008 3123 2.359107 CAGCCACATGAGCACCGT 60.359 61.111 13.56 0.00 0.00 4.83
3009 3124 2.046892 AGCCACATGAGCACCGTC 60.047 61.111 13.56 0.00 0.00 4.79
3030 3145 2.161609 CGTGAAAGGCACCTTTGGATAC 59.838 50.000 19.14 11.05 45.16 2.24
3039 3154 3.372025 GCACCTTTGGATACCTTGATCCT 60.372 47.826 4.19 0.00 45.07 3.24
3049 3164 5.598830 GGATACCTTGATCCTGAGTACTTCA 59.401 44.000 0.00 0.00 42.03 3.02
3066 3181 1.175347 TCAGACTGCAGCGTCTCACT 61.175 55.000 15.27 0.00 42.10 3.41
3297 3412 0.729116 AGAAATGCGTTGCTGATCGG 59.271 50.000 0.00 0.00 0.00 4.18
3418 3551 2.801342 GCGTCATCTCTTCAGATCACCC 60.801 54.545 0.00 0.00 37.25 4.61
3508 3644 3.137913 AGATATTGCACATCCAGAAGGCT 59.862 43.478 4.26 0.00 33.74 4.58
3524 3660 4.278419 AGAAGGCTGATAAAAGCAAAACGT 59.722 37.500 0.00 0.00 45.43 3.99
3531 3667 5.992729 TGATAAAAGCAAAACGTAGGTCAC 58.007 37.500 0.00 0.00 0.00 3.67
3533 3669 4.976224 AAAAGCAAAACGTAGGTCACTT 57.024 36.364 0.00 0.00 0.00 3.16
3660 3841 1.399440 CTCATGGCCACTGACATTTCG 59.601 52.381 8.16 0.00 0.00 3.46
3690 3871 5.170748 GTCCCAGGTTGCTTTGATATTTTG 58.829 41.667 0.00 0.00 0.00 2.44
3773 3972 2.152016 GCTATCAAGGATAAACGGGGC 58.848 52.381 0.00 0.00 0.00 5.80
3864 4063 7.888021 ACCAACAGTGTAATCAATCTAATTGGA 59.112 33.333 8.40 0.00 40.61 3.53
3865 4064 8.400947 CCAACAGTGTAATCAATCTAATTGGAG 58.599 37.037 0.00 0.00 40.61 3.86
3866 4065 8.950210 CAACAGTGTAATCAATCTAATTGGAGT 58.050 33.333 0.00 0.00 40.61 3.85
3867 4066 9.520515 AACAGTGTAATCAATCTAATTGGAGTT 57.479 29.630 0.00 0.00 40.61 3.01
3928 4136 4.893524 TGATTCTTAGCGTCTTATCCAGGA 59.106 41.667 0.00 0.00 0.00 3.86
3934 4142 3.458189 AGCGTCTTATCCAGGATTTTCG 58.542 45.455 7.44 9.09 0.00 3.46
3980 4188 1.078759 CAGAAGTCGATGACGCCACC 61.079 60.000 0.00 0.00 37.67 4.61
4007 4215 0.534427 CCACAGCCTCATCGATGCAT 60.534 55.000 20.81 0.00 0.00 3.96
4191 4410 2.036346 GGCCCATTCATATCTTGCAACC 59.964 50.000 0.00 0.00 0.00 3.77
4276 4503 3.759618 GGTTTTTATTCATGTGACCCGGA 59.240 43.478 0.73 0.00 0.00 5.14
4277 4504 4.142469 GGTTTTTATTCATGTGACCCGGAG 60.142 45.833 0.73 0.00 0.00 4.63
4280 4507 0.541863 ATTCATGTGACCCGGAGACC 59.458 55.000 0.73 0.00 0.00 3.85
4295 4522 2.074576 GAGACCCCGTGAAACTAAAGC 58.925 52.381 0.00 0.00 31.75 3.51
4296 4523 0.794473 GACCCCGTGAAACTAAAGCG 59.206 55.000 0.00 0.00 31.75 4.68
4314 4557 4.361971 TGCGGTCCTCTCGGGAGT 62.362 66.667 12.26 0.00 46.10 3.85
4316 4559 2.647158 GCGGTCCTCTCGGGAGTTT 61.647 63.158 12.26 0.00 46.10 2.66
4322 4565 2.298163 GTCCTCTCGGGAGTTTGTACAA 59.702 50.000 12.26 3.59 46.10 2.41
4335 4578 8.357402 GGGAGTTTGTACAATTTTTCAGTGTAT 58.643 33.333 9.56 0.00 30.87 2.29
4343 4586 6.913170 ACAATTTTTCAGTGTATACCAGCAG 58.087 36.000 0.00 0.00 0.00 4.24
4347 4590 6.554334 TTTTCAGTGTATACCAGCAGTTTC 57.446 37.500 0.00 0.00 0.00 2.78
4348 4591 4.202245 TCAGTGTATACCAGCAGTTTCC 57.798 45.455 0.00 0.00 0.00 3.13
4371 4618 6.494491 TCCAACTGTACTTAAGGTAGCTACAA 59.506 38.462 24.75 10.21 0.00 2.41
4372 4619 6.812160 CCAACTGTACTTAAGGTAGCTACAAG 59.188 42.308 24.75 20.26 0.00 3.16
4410 4657 5.220681 GGAGCGTCTATTTGGTCAAGAATTC 60.221 44.000 0.00 0.00 34.39 2.17
4421 4668 6.737254 TGGTCAAGAATTCGTTATTCCTTC 57.263 37.500 0.00 0.00 43.08 3.46
4434 4681 5.232414 CGTTATTCCTTCGTCCAAGATCTTC 59.768 44.000 4.57 0.00 33.29 2.87
4442 4689 5.578005 TCGTCCAAGATCTTCGAACTTAT 57.422 39.130 13.54 0.00 0.00 1.73
4443 4690 5.579718 TCGTCCAAGATCTTCGAACTTATC 58.420 41.667 13.54 0.00 0.00 1.75
4444 4691 5.357314 TCGTCCAAGATCTTCGAACTTATCT 59.643 40.000 13.54 0.37 0.00 1.98
4445 4692 6.037098 CGTCCAAGATCTTCGAACTTATCTT 58.963 40.000 4.57 15.13 38.82 2.40
4446 4693 6.197468 CGTCCAAGATCTTCGAACTTATCTTC 59.803 42.308 16.89 9.55 36.73 2.87
4447 4694 7.262048 GTCCAAGATCTTCGAACTTATCTTCT 58.738 38.462 16.89 2.54 36.73 2.85
4448 4695 7.434013 GTCCAAGATCTTCGAACTTATCTTCTC 59.566 40.741 16.89 10.18 36.73 2.87
4449 4696 7.122799 TCCAAGATCTTCGAACTTATCTTCTCA 59.877 37.037 16.89 6.78 36.73 3.27
4450 4697 7.221838 CCAAGATCTTCGAACTTATCTTCTCAC 59.778 40.741 16.89 0.00 36.73 3.51
4451 4698 6.801575 AGATCTTCGAACTTATCTTCTCACC 58.198 40.000 0.00 0.00 0.00 4.02
4452 4699 5.977489 TCTTCGAACTTATCTTCTCACCA 57.023 39.130 0.00 0.00 0.00 4.17
4453 4700 6.340962 TCTTCGAACTTATCTTCTCACCAA 57.659 37.500 0.00 0.00 0.00 3.67
4454 4701 6.755206 TCTTCGAACTTATCTTCTCACCAAA 58.245 36.000 0.00 0.00 0.00 3.28
4455 4702 6.868864 TCTTCGAACTTATCTTCTCACCAAAG 59.131 38.462 0.00 0.00 0.00 2.77
4456 4703 4.929808 TCGAACTTATCTTCTCACCAAAGC 59.070 41.667 0.00 0.00 0.00 3.51
4457 4704 4.932200 CGAACTTATCTTCTCACCAAAGCT 59.068 41.667 0.00 0.00 0.00 3.74
4458 4705 5.409826 CGAACTTATCTTCTCACCAAAGCTT 59.590 40.000 0.00 0.00 0.00 3.74
4459 4706 6.590292 CGAACTTATCTTCTCACCAAAGCTTA 59.410 38.462 0.00 0.00 0.00 3.09
4460 4707 7.278868 CGAACTTATCTTCTCACCAAAGCTTAT 59.721 37.037 0.00 0.00 0.00 1.73
4461 4708 8.870075 AACTTATCTTCTCACCAAAGCTTATT 57.130 30.769 0.00 0.00 0.00 1.40
4462 4709 9.959721 AACTTATCTTCTCACCAAAGCTTATTA 57.040 29.630 0.00 0.00 0.00 0.98
4463 4710 9.384764 ACTTATCTTCTCACCAAAGCTTATTAC 57.615 33.333 0.00 0.00 0.00 1.89
4464 4711 9.606631 CTTATCTTCTCACCAAAGCTTATTACT 57.393 33.333 0.00 0.00 0.00 2.24
4465 4712 9.601217 TTATCTTCTCACCAAAGCTTATTACTC 57.399 33.333 0.00 0.00 0.00 2.59
4466 4713 6.407202 TCTTCTCACCAAAGCTTATTACTCC 58.593 40.000 0.00 0.00 0.00 3.85
4467 4714 5.099042 TCTCACCAAAGCTTATTACTCCC 57.901 43.478 0.00 0.00 0.00 4.30
4468 4715 4.783227 TCTCACCAAAGCTTATTACTCCCT 59.217 41.667 0.00 0.00 0.00 4.20
4469 4716 5.099042 TCACCAAAGCTTATTACTCCCTC 57.901 43.478 0.00 0.00 0.00 4.30
4470 4717 4.080526 TCACCAAAGCTTATTACTCCCTCC 60.081 45.833 0.00 0.00 0.00 4.30
4471 4718 3.118371 ACCAAAGCTTATTACTCCCTCCG 60.118 47.826 0.00 0.00 0.00 4.63
4472 4719 3.118371 CCAAAGCTTATTACTCCCTCCGT 60.118 47.826 0.00 0.00 0.00 4.69
4473 4720 3.821421 AAGCTTATTACTCCCTCCGTG 57.179 47.619 0.00 0.00 0.00 4.94
4474 4721 1.413077 AGCTTATTACTCCCTCCGTGC 59.587 52.381 0.00 0.00 0.00 5.34
4475 4722 1.540580 GCTTATTACTCCCTCCGTGCC 60.541 57.143 0.00 0.00 0.00 5.01
4476 4723 0.748450 TTATTACTCCCTCCGTGCCG 59.252 55.000 0.00 0.00 0.00 5.69
4477 4724 0.106569 TATTACTCCCTCCGTGCCGA 60.107 55.000 0.00 0.00 0.00 5.54
4478 4725 0.759436 ATTACTCCCTCCGTGCCGAT 60.759 55.000 0.00 0.00 0.00 4.18
4479 4726 1.672854 TTACTCCCTCCGTGCCGATG 61.673 60.000 0.00 0.00 0.00 3.84
4480 4727 4.899239 CTCCCTCCGTGCCGATGC 62.899 72.222 0.00 0.00 38.26 3.91
4500 4747 3.983741 GCACTAGGCATCTTAGGTAGTG 58.016 50.000 0.00 3.89 42.28 2.74
4501 4748 3.983741 CACTAGGCATCTTAGGTAGTGC 58.016 50.000 0.00 0.00 35.54 4.40
4502 4749 3.384789 CACTAGGCATCTTAGGTAGTGCA 59.615 47.826 0.00 0.00 39.27 4.57
4503 4750 2.990066 AGGCATCTTAGGTAGTGCAC 57.010 50.000 9.40 9.40 39.27 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.123928 ATGAACTAAGCTCGGGGGAG 58.876 55.000 0.00 0.00 0.00 4.30
40 41 4.261801 CCACTCCAAAATACACAGTAGGG 58.738 47.826 0.00 0.00 0.00 3.53
47 48 5.722021 AATGTTCCCACTCCAAAATACAC 57.278 39.130 0.00 0.00 0.00 2.90
102 103 9.197306 GGTTGGGGATCATACTTTTATAAGTTT 57.803 33.333 3.82 0.00 41.85 2.66
103 104 8.566109 AGGTTGGGGATCATACTTTTATAAGTT 58.434 33.333 3.82 0.00 41.85 2.66
108 109 6.102615 TGCTAGGTTGGGGATCATACTTTTAT 59.897 38.462 0.00 0.00 0.00 1.40
214 217 0.521735 GGAACAACCGTCCTGAATGC 59.478 55.000 0.00 0.00 0.00 3.56
230 233 8.531146 ACAAGAAGAGAAAAAGAAAACATGGAA 58.469 29.630 0.00 0.00 0.00 3.53
241 244 7.313951 AGAAGTCACACAAGAAGAGAAAAAG 57.686 36.000 0.00 0.00 0.00 2.27
246 249 5.598416 TGAAGAAGTCACACAAGAAGAGA 57.402 39.130 0.00 0.00 0.00 3.10
247 250 5.407995 GGATGAAGAAGTCACACAAGAAGAG 59.592 44.000 0.00 0.00 39.72 2.85
249 252 5.049818 GTGGATGAAGAAGTCACACAAGAAG 60.050 44.000 0.00 0.00 39.72 2.85
251 254 4.141733 TGTGGATGAAGAAGTCACACAAGA 60.142 41.667 0.00 0.00 39.19 3.02
252 255 4.129380 TGTGGATGAAGAAGTCACACAAG 58.871 43.478 0.00 0.00 39.19 3.16
253 256 4.149511 TGTGGATGAAGAAGTCACACAA 57.850 40.909 0.00 0.00 39.19 3.33
254 257 3.836365 TGTGGATGAAGAAGTCACACA 57.164 42.857 0.00 0.00 39.60 3.72
286 289 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
287 290 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
288 291 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
289 292 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
290 293 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
291 294 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
292 295 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
293 296 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
294 297 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
295 298 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
296 299 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
297 300 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
299 302 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
300 303 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
301 304 8.635765 TTGAAATGCCTAGAAAGACAAGTATT 57.364 30.769 0.00 0.00 0.00 1.89
302 305 8.635765 TTTGAAATGCCTAGAAAGACAAGTAT 57.364 30.769 0.00 0.00 0.00 2.12
303 306 8.514594 CATTTGAAATGCCTAGAAAGACAAGTA 58.485 33.333 4.82 0.00 0.00 2.24
304 307 6.959639 TTTGAAATGCCTAGAAAGACAAGT 57.040 33.333 0.00 0.00 0.00 3.16
305 308 7.596494 TCATTTGAAATGCCTAGAAAGACAAG 58.404 34.615 12.86 0.00 0.00 3.16
306 309 7.523293 TCATTTGAAATGCCTAGAAAGACAA 57.477 32.000 12.86 0.00 0.00 3.18
307 310 7.523293 TTCATTTGAAATGCCTAGAAAGACA 57.477 32.000 12.86 0.00 0.00 3.41
312 315 9.187996 TGTGATATTCATTTGAAATGCCTAGAA 57.812 29.630 12.86 2.59 37.61 2.10
313 316 8.750515 TGTGATATTCATTTGAAATGCCTAGA 57.249 30.769 12.86 0.00 37.61 2.43
316 319 8.077991 CGTATGTGATATTCATTTGAAATGCCT 58.922 33.333 12.86 5.36 37.61 4.75
317 320 7.326789 CCGTATGTGATATTCATTTGAAATGCC 59.673 37.037 12.86 1.28 37.61 4.40
318 321 8.075574 TCCGTATGTGATATTCATTTGAAATGC 58.924 33.333 12.86 0.00 37.61 3.56
321 324 9.119418 ACATCCGTATGTGATATTCATTTGAAA 57.881 29.630 0.00 0.00 44.79 2.69
322 325 8.675705 ACATCCGTATGTGATATTCATTTGAA 57.324 30.769 0.00 0.00 44.79 2.69
323 326 9.942850 ATACATCCGTATGTGATATTCATTTGA 57.057 29.630 3.56 0.00 45.99 2.69
324 327 9.977762 CATACATCCGTATGTGATATTCATTTG 57.022 33.333 3.56 0.00 46.70 2.32
366 369 6.812160 ACGGAGTAAAATGAGTGAATCTACAC 59.188 38.462 0.00 0.00 41.94 2.90
367 370 6.931838 ACGGAGTAAAATGAGTGAATCTACA 58.068 36.000 0.00 0.00 41.94 2.74
383 386 7.255555 TTCAACAAGTGACTACATACGGAGTAA 60.256 37.037 0.00 0.00 41.03 2.24
384 387 6.207221 TTCAACAAGTGACTACATACGGAGTA 59.793 38.462 0.00 0.00 41.66 2.59
385 388 5.010314 TTCAACAAGTGACTACATACGGAGT 59.990 40.000 0.00 0.00 39.84 3.85
386 389 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
387 390 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
388 391 6.534059 CATTTCAACAAGTGACTACATACGG 58.466 40.000 0.00 0.00 35.39 4.02
389 392 6.015504 GCATTTCAACAAGTGACTACATACG 58.984 40.000 0.00 0.00 35.39 3.06
390 393 6.149474 AGGCATTTCAACAAGTGACTACATAC 59.851 38.462 0.00 0.00 35.84 2.39
391 394 6.237901 AGGCATTTCAACAAGTGACTACATA 58.762 36.000 0.00 0.00 35.84 2.29
392 395 5.072741 AGGCATTTCAACAAGTGACTACAT 58.927 37.500 0.00 0.00 35.84 2.29
393 396 4.460263 AGGCATTTCAACAAGTGACTACA 58.540 39.130 0.00 0.00 35.84 2.74
394 397 5.932303 TCTAGGCATTTCAACAAGTGACTAC 59.068 40.000 0.00 0.00 38.51 2.73
395 398 6.109156 TCTAGGCATTTCAACAAGTGACTA 57.891 37.500 0.00 0.00 38.51 2.59
396 399 4.973168 TCTAGGCATTTCAACAAGTGACT 58.027 39.130 0.00 0.00 40.60 3.41
397 400 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
398 401 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
399 402 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
400 403 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
401 404 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
402 405 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
403 406 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
404 407 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
405 408 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
406 409 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
408 411 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
409 412 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
410 413 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
411 414 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
412 415 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
413 416 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
414 417 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
415 418 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
416 419 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
417 420 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
418 421 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
419 422 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
420 423 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
421 424 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
422 425 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
423 426 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
424 427 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
425 428 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
426 429 4.892345 AGTACTCCCTCCGTTCCTAAATAC 59.108 45.833 0.00 0.00 0.00 1.89
427 430 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
428 431 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
429 432 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
430 433 3.011032 AGAAGTACTCCCTCCGTTCCTAA 59.989 47.826 0.00 0.00 0.00 2.69
431 434 2.579860 AGAAGTACTCCCTCCGTTCCTA 59.420 50.000 0.00 0.00 0.00 2.94
432 435 1.358445 AGAAGTACTCCCTCCGTTCCT 59.642 52.381 0.00 0.00 0.00 3.36
433 436 1.849977 AGAAGTACTCCCTCCGTTCC 58.150 55.000 0.00 0.00 0.00 3.62
434 437 3.130164 GGTAAGAAGTACTCCCTCCGTTC 59.870 52.174 0.00 0.00 32.80 3.95
435 438 3.095332 GGTAAGAAGTACTCCCTCCGTT 58.905 50.000 0.00 0.00 32.80 4.44
436 439 2.311243 AGGTAAGAAGTACTCCCTCCGT 59.689 50.000 0.00 0.00 32.80 4.69
437 440 2.950975 GAGGTAAGAAGTACTCCCTCCG 59.049 54.545 0.00 0.00 39.10 4.63
438 441 3.978610 TGAGGTAAGAAGTACTCCCTCC 58.021 50.000 16.48 8.56 41.76 4.30
439 442 6.381707 AGAAATGAGGTAAGAAGTACTCCCTC 59.618 42.308 14.07 14.07 42.28 4.30
440 443 6.265304 AGAAATGAGGTAAGAAGTACTCCCT 58.735 40.000 0.00 0.00 34.11 4.20
441 444 6.547930 AGAAATGAGGTAAGAAGTACTCCC 57.452 41.667 0.00 0.00 32.80 4.30
442 445 8.315482 AGAAAGAAATGAGGTAAGAAGTACTCC 58.685 37.037 0.00 0.00 32.80 3.85
443 446 9.713713 AAGAAAGAAATGAGGTAAGAAGTACTC 57.286 33.333 0.00 0.00 32.80 2.59
488 491 7.130488 GGTGAGATCCAGCATGTTACATAACA 61.130 42.308 6.92 6.92 41.76 2.41
528 533 9.818796 GAGAATTTAGCTAAACAGAAACAGAAG 57.181 33.333 20.85 0.00 0.00 2.85
530 535 7.360101 GCGAGAATTTAGCTAAACAGAAACAGA 60.360 37.037 20.85 0.00 0.00 3.41
531 536 6.738649 GCGAGAATTTAGCTAAACAGAAACAG 59.261 38.462 20.85 9.08 0.00 3.16
532 537 6.203915 TGCGAGAATTTAGCTAAACAGAAACA 59.796 34.615 20.85 12.57 0.00 2.83
533 538 6.599437 TGCGAGAATTTAGCTAAACAGAAAC 58.401 36.000 20.85 10.33 0.00 2.78
534 539 6.795098 TGCGAGAATTTAGCTAAACAGAAA 57.205 33.333 20.85 0.00 0.00 2.52
623 639 0.821711 TTGGAAACCGTGCCAGAAGG 60.822 55.000 0.00 0.00 35.23 3.46
631 647 3.452474 TCAGCAAAAATTGGAAACCGTG 58.548 40.909 0.00 0.00 0.00 4.94
634 650 5.546526 TGGTATCAGCAAAAATTGGAAACC 58.453 37.500 0.00 0.00 0.00 3.27
643 659 4.215399 CGAAGTTCCTGGTATCAGCAAAAA 59.785 41.667 0.00 0.00 39.61 1.94
714 732 7.392418 TGATAGATGAAAGGCAGAATATCCAG 58.608 38.462 0.00 0.00 0.00 3.86
720 738 5.064558 CAGCTGATAGATGAAAGGCAGAAT 58.935 41.667 8.42 0.00 32.38 2.40
735 753 5.192176 TGGCAATATGAACAACAGCTGATA 58.808 37.500 23.35 6.87 0.00 2.15
775 793 7.722363 TGCTATCACGGAGAAGAAATGTTATA 58.278 34.615 0.00 0.00 0.00 0.98
776 794 6.582636 TGCTATCACGGAGAAGAAATGTTAT 58.417 36.000 0.00 0.00 0.00 1.89
785 808 2.428890 AGAACCTGCTATCACGGAGAAG 59.571 50.000 0.00 0.00 0.00 2.85
788 811 3.305676 CCATAGAACCTGCTATCACGGAG 60.306 52.174 0.00 0.00 0.00 4.63
797 824 2.173126 AGAGAGCCATAGAACCTGCT 57.827 50.000 0.00 0.00 36.62 4.24
876 907 4.541250 TGATAGGATTTGGGGCAAGAAT 57.459 40.909 0.00 0.00 0.00 2.40
1036 1085 0.449388 GCTAACAGTGTGAGGCATGC 59.551 55.000 9.90 9.90 0.00 4.06
1116 1168 0.819259 GGCCTGATGCTCCGCAATTA 60.819 55.000 0.00 0.00 43.62 1.40
1142 1200 4.750098 CCCAAGTACGACCAATATCATCAC 59.250 45.833 0.00 0.00 0.00 3.06
1151 1209 1.667151 CCGTCCCAAGTACGACCAA 59.333 57.895 0.00 0.00 42.90 3.67
1225 1289 0.037232 GGGAGTGAAGGGTCTTCGTG 60.037 60.000 3.62 0.00 0.00 4.35
1228 1292 0.906066 GAGGGGAGTGAAGGGTCTTC 59.094 60.000 1.06 1.06 0.00 2.87
1248 1312 3.901844 GTGCAGTCATATAAGGGACCCTA 59.098 47.826 15.29 0.00 34.58 3.53
1284 1348 5.755849 ACAGGGAAGGAATAGGTGTAATTG 58.244 41.667 0.00 0.00 0.00 2.32
1369 1433 1.351017 ACCGAAGAAGGCATTGGAGAA 59.649 47.619 0.00 0.00 33.69 2.87
1375 1439 1.523758 GTGACACCGAAGAAGGCATT 58.476 50.000 0.00 0.00 33.69 3.56
1402 1466 8.553459 TTGAAGTCATTTAAGAGGACAAGATC 57.447 34.615 0.00 0.00 34.04 2.75
1572 1642 1.450312 GAAGATGTCAGGCGTGGGG 60.450 63.158 6.56 0.00 0.00 4.96
1623 1699 8.860088 TCAGTATCGAATGAGAATGGAGATAAA 58.140 33.333 0.00 0.00 32.60 1.40
1624 1700 8.409358 TCAGTATCGAATGAGAATGGAGATAA 57.591 34.615 0.00 0.00 32.60 1.75
1650 1726 1.630369 TGCATAGTCTGGAGGCTTGTT 59.370 47.619 0.00 0.00 0.00 2.83
1669 1745 1.301716 CCCCGATATTGAGCCGGTG 60.302 63.158 1.90 0.00 41.53 4.94
1703 1779 1.534729 AAAGCCCGAGTCATCAAACC 58.465 50.000 0.00 0.00 0.00 3.27
1705 1781 3.078837 GGTAAAAGCCCGAGTCATCAAA 58.921 45.455 0.00 0.00 0.00 2.69
1707 1783 2.396590 GGTAAAAGCCCGAGTCATCA 57.603 50.000 0.00 0.00 0.00 3.07
1745 1824 4.649674 CAGAGCCACCAGATAAGTAAGGTA 59.350 45.833 0.00 0.00 32.01 3.08
1746 1825 3.452627 CAGAGCCACCAGATAAGTAAGGT 59.547 47.826 0.00 0.00 33.91 3.50
1749 1834 2.771943 CCCAGAGCCACCAGATAAGTAA 59.228 50.000 0.00 0.00 0.00 2.24
1830 1918 9.472361 GTTTTATAGACGTCTATTGGAGCAATA 57.528 33.333 35.91 18.66 39.66 1.90
1853 1941 0.609131 CCCCATTGACCGAGCTGTTT 60.609 55.000 0.00 0.00 0.00 2.83
1854 1942 1.002134 CCCCATTGACCGAGCTGTT 60.002 57.895 0.00 0.00 0.00 3.16
1891 1979 4.563140 TCCATGTAAGGTTGTACTTCCC 57.437 45.455 0.00 0.00 32.02 3.97
1892 1980 7.462571 AAAATCCATGTAAGGTTGTACTTCC 57.537 36.000 0.00 0.00 32.02 3.46
1896 1984 6.183360 CCGGTAAAATCCATGTAAGGTTGTAC 60.183 42.308 0.00 0.00 0.00 2.90
1951 2039 6.367422 GGATACTTAATCTCGCAGAAATGGAG 59.633 42.308 0.00 0.00 34.09 3.86
2077 2165 8.654215 CATGATAACATAGTCTGTGTATGATGC 58.346 37.037 2.29 0.00 38.39 3.91
2125 2213 1.333619 GTGAAGTGCAACCGACATGTT 59.666 47.619 0.00 0.00 37.80 2.71
2134 2222 2.191128 AGATCAGGGTGAAGTGCAAC 57.809 50.000 0.00 0.00 0.00 4.17
2175 2263 4.571984 TCAAGACCATTCAGTATTGCATCG 59.428 41.667 0.00 0.00 38.53 3.84
2202 2290 5.127194 TGATCCGTAACTCTGTAGCTTGAAT 59.873 40.000 0.00 0.00 0.00 2.57
2234 2322 0.034670 AGGATTGAGCCCAGCAAGAC 60.035 55.000 0.00 0.00 0.00 3.01
2273 2361 4.319177 AGATTGCCTATTAAGATCCGCAC 58.681 43.478 0.00 0.00 0.00 5.34
2282 2370 3.181459 TGCACCGCTAGATTGCCTATTAA 60.181 43.478 0.00 0.00 35.26 1.40
2291 2379 4.458989 TGAATTTTCTTGCACCGCTAGATT 59.541 37.500 0.00 0.00 39.72 2.40
2312 2400 3.965379 TGGCTACGATGTAACCTTTGA 57.035 42.857 0.00 0.00 0.00 2.69
2320 2408 0.671796 CCACCGATGGCTACGATGTA 59.328 55.000 0.00 0.00 39.82 2.29
2325 2413 0.742505 TAGTTCCACCGATGGCTACG 59.257 55.000 0.00 0.00 46.80 3.51
2326 2414 1.755380 AGTAGTTCCACCGATGGCTAC 59.245 52.381 5.65 5.65 46.80 3.58
2353 2462 6.923199 AAGGACAATCACCATGAAAGAAAT 57.077 33.333 0.00 0.00 0.00 2.17
2365 2474 1.725931 CGCGCTGAAAAGGACAATCAC 60.726 52.381 5.56 0.00 0.00 3.06
2383 2492 1.258982 CCGTCTGCAGATAACAATCGC 59.741 52.381 21.47 2.18 0.00 4.58
2386 2495 4.471904 TCTTCCGTCTGCAGATAACAAT 57.528 40.909 21.47 0.00 0.00 2.71
2423 2532 2.158740 TGTCCATGGTCGGTCTTGAAAA 60.159 45.455 12.58 0.00 0.00 2.29
2426 2535 1.207089 GATGTCCATGGTCGGTCTTGA 59.793 52.381 12.58 0.00 0.00 3.02
2475 2590 2.223272 TGAGAAATGACGGACGAGATCG 60.223 50.000 0.00 0.00 46.33 3.69
2497 2612 4.741676 GGTGACAAGTTGAATTTCTGCAAG 59.258 41.667 10.54 0.00 0.00 4.01
2539 2654 1.837439 ACCACCTCTGCCGATGATAAA 59.163 47.619 0.00 0.00 0.00 1.40
2586 2701 0.865769 CCACTTTTGTCCTTCCGTCG 59.134 55.000 0.00 0.00 0.00 5.12
2593 2708 2.036346 GCTTGATTGCCACTTTTGTCCT 59.964 45.455 0.00 0.00 0.00 3.85
2601 2716 1.825090 TGAATCGCTTGATTGCCACT 58.175 45.000 0.00 0.00 42.34 4.00
2625 2740 5.609423 TCATGAAAACCTTGTTGGGATTTG 58.391 37.500 0.00 0.00 41.11 2.32
2640 2755 6.073058 CGATTTCAGTCTGGAACTCATGAAAA 60.073 38.462 0.00 0.00 35.45 2.29
2877 2992 1.407299 CGGTGGATGATTCCTTGCTCA 60.407 52.381 0.00 0.00 43.07 4.26
2993 3108 3.490759 CGACGGTGCTCATGTGGC 61.491 66.667 6.50 6.50 0.00 5.01
3008 3123 0.181587 TCCAAAGGTGCCTTTCACGA 59.818 50.000 12.85 6.85 46.56 4.35
3009 3124 1.247567 ATCCAAAGGTGCCTTTCACG 58.752 50.000 12.85 3.40 46.56 4.35
3039 3154 1.068264 CGCTGCAGTCTGAAGTACTCA 60.068 52.381 16.64 0.00 0.00 3.41
3090 3205 2.096248 GTCTCAAACAACACAACCCCA 58.904 47.619 0.00 0.00 0.00 4.96
3193 3308 5.153950 ACAATCTCCTTGAGTACACCTTC 57.846 43.478 0.00 0.00 38.29 3.46
3297 3412 2.627515 TTGATGGCCTGTCTATGCTC 57.372 50.000 3.32 0.00 0.00 4.26
3306 3421 3.526211 ATCACCCATTGATGGCCTG 57.474 52.632 3.32 0.00 43.87 4.85
3345 3460 1.976132 TATCCTGCAGCTGGAGTGCC 61.976 60.000 30.32 7.13 40.43 5.01
3384 3517 4.760047 GACGCACCCTCGGCACAT 62.760 66.667 0.00 0.00 37.45 3.21
3418 3551 0.108138 GGTCTGTCTGAATCCACCGG 60.108 60.000 0.00 0.00 0.00 5.28
3508 3644 5.761234 AGTGACCTACGTTTTGCTTTTATCA 59.239 36.000 0.00 0.00 0.00 2.15
3643 3816 2.198827 TTCGAAATGTCAGTGGCCAT 57.801 45.000 9.72 0.00 0.00 4.40
3660 3841 2.109425 AGCAACCTGGGACGTATTTC 57.891 50.000 0.00 0.00 0.00 2.17
3690 3871 4.708177 ACCTTGGTGATCACATATGTAGC 58.292 43.478 26.47 7.76 0.00 3.58
3705 3886 0.258774 AAGCACCAGACAACCTTGGT 59.741 50.000 0.00 0.00 34.56 3.67
3864 4063 0.320771 CACTGGGCACGCTCTTAACT 60.321 55.000 0.00 0.00 0.00 2.24
3865 4064 1.298859 CCACTGGGCACGCTCTTAAC 61.299 60.000 0.00 0.00 0.00 2.01
3866 4065 1.003839 CCACTGGGCACGCTCTTAA 60.004 57.895 0.00 0.00 0.00 1.85
3867 4066 1.264749 ATCCACTGGGCACGCTCTTA 61.265 55.000 0.00 0.00 0.00 2.10
3868 4067 1.264749 TATCCACTGGGCACGCTCTT 61.265 55.000 0.00 0.00 0.00 2.85
3869 4068 1.050988 ATATCCACTGGGCACGCTCT 61.051 55.000 0.00 0.00 0.00 4.09
3870 4069 0.601311 GATATCCACTGGGCACGCTC 60.601 60.000 0.00 0.00 0.00 5.03
3871 4070 1.447643 GATATCCACTGGGCACGCT 59.552 57.895 0.00 0.00 0.00 5.07
3872 4071 1.598130 GGATATCCACTGGGCACGC 60.598 63.158 17.34 0.00 35.64 5.34
3873 4072 0.250038 CTGGATATCCACTGGGCACG 60.250 60.000 20.98 4.69 42.01 5.34
3990 4198 3.302375 GATGCATCGATGAGGCTGT 57.698 52.632 29.20 6.95 40.21 4.40
4007 4215 1.182667 CCATATATCTGGCGACCCGA 58.817 55.000 0.00 0.00 0.00 5.14
4276 4503 1.607251 CGCTTTAGTTTCACGGGGTCT 60.607 52.381 0.00 0.00 0.00 3.85
4277 4504 0.794473 CGCTTTAGTTTCACGGGGTC 59.206 55.000 0.00 0.00 0.00 4.46
4280 4507 0.110373 GCACGCTTTAGTTTCACGGG 60.110 55.000 0.00 0.00 0.00 5.28
4283 4510 0.584876 ACCGCACGCTTTAGTTTCAC 59.415 50.000 0.00 0.00 0.00 3.18
4316 4559 7.445707 TGCTGGTATACACTGAAAAATTGTACA 59.554 33.333 5.01 0.00 27.75 2.90
4322 4565 7.309194 GGAAACTGCTGGTATACACTGAAAAAT 60.309 37.037 5.01 0.00 0.00 1.82
4347 4590 6.276832 TGTAGCTACCTTAAGTACAGTTGG 57.723 41.667 21.01 0.00 0.00 3.77
4348 4591 7.376615 ACTTGTAGCTACCTTAAGTACAGTTG 58.623 38.462 20.66 1.22 30.40 3.16
4371 4618 9.561069 AATAGACGCTCCAAAATAATCAATACT 57.439 29.630 0.00 0.00 0.00 2.12
4381 4628 4.331968 TGACCAAATAGACGCTCCAAAAT 58.668 39.130 0.00 0.00 0.00 1.82
4391 4638 9.704098 GAATAACGAATTCTTGACCAAATAGAC 57.296 33.333 3.52 0.00 40.82 2.59
4410 4657 4.683832 AGATCTTGGACGAAGGAATAACG 58.316 43.478 0.00 0.00 31.85 3.18
4421 4668 5.583495 AGATAAGTTCGAAGATCTTGGACG 58.417 41.667 18.57 13.23 45.03 4.79
4434 4681 4.932200 AGCTTTGGTGAGAAGATAAGTTCG 59.068 41.667 0.00 0.00 0.00 3.95
4442 4689 6.407202 GGAGTAATAAGCTTTGGTGAGAAGA 58.593 40.000 3.20 0.00 0.00 2.87
4443 4690 5.586643 GGGAGTAATAAGCTTTGGTGAGAAG 59.413 44.000 3.20 0.00 0.00 2.85
4444 4691 5.250774 AGGGAGTAATAAGCTTTGGTGAGAA 59.749 40.000 3.20 0.00 0.00 2.87
4445 4692 4.783227 AGGGAGTAATAAGCTTTGGTGAGA 59.217 41.667 3.20 0.00 0.00 3.27
4446 4693 5.104259 AGGGAGTAATAAGCTTTGGTGAG 57.896 43.478 3.20 0.00 0.00 3.51
4447 4694 4.080526 GGAGGGAGTAATAAGCTTTGGTGA 60.081 45.833 3.20 0.00 0.00 4.02
4448 4695 4.200092 GGAGGGAGTAATAAGCTTTGGTG 58.800 47.826 3.20 0.00 0.00 4.17
4449 4696 3.118371 CGGAGGGAGTAATAAGCTTTGGT 60.118 47.826 3.20 0.00 0.00 3.67
4450 4697 3.118371 ACGGAGGGAGTAATAAGCTTTGG 60.118 47.826 3.20 0.00 0.00 3.28
4451 4698 3.871594 CACGGAGGGAGTAATAAGCTTTG 59.128 47.826 3.20 0.00 0.00 2.77
4452 4699 3.681874 GCACGGAGGGAGTAATAAGCTTT 60.682 47.826 3.20 0.00 0.00 3.51
4453 4700 2.158943 GCACGGAGGGAGTAATAAGCTT 60.159 50.000 3.48 3.48 0.00 3.74
4454 4701 1.413077 GCACGGAGGGAGTAATAAGCT 59.587 52.381 0.00 0.00 0.00 3.74
4455 4702 1.540580 GGCACGGAGGGAGTAATAAGC 60.541 57.143 0.00 0.00 0.00 3.09
4456 4703 2.528041 GGCACGGAGGGAGTAATAAG 57.472 55.000 0.00 0.00 0.00 1.73
4479 4726 3.983741 CACTACCTAAGATGCCTAGTGC 58.016 50.000 0.00 0.00 41.77 4.40
4480 4727 3.384789 TGCACTACCTAAGATGCCTAGTG 59.615 47.826 0.00 0.00 38.13 2.74
4481 4728 3.385111 GTGCACTACCTAAGATGCCTAGT 59.615 47.826 10.32 0.00 37.26 2.57
4482 4729 3.243907 GGTGCACTACCTAAGATGCCTAG 60.244 52.174 17.98 0.00 46.51 3.02
4483 4730 2.698797 GGTGCACTACCTAAGATGCCTA 59.301 50.000 17.98 0.00 46.51 3.93
4484 4731 1.486726 GGTGCACTACCTAAGATGCCT 59.513 52.381 17.98 0.00 46.51 4.75
4485 4732 1.954927 GGTGCACTACCTAAGATGCC 58.045 55.000 17.98 0.00 46.51 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.