Multiple sequence alignment - TraesCS3D01G071400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G071400 chr3D 100.000 2276 0 0 1 2276 31890960 31888685 0.000000e+00 4204.0
1 TraesCS3D01G071400 chr3D 76.613 248 39 16 1774 2014 397976451 397976686 3.970000e-23 119.0
2 TraesCS3D01G071400 chr7D 97.623 1304 31 0 1 1304 544560454 544559151 0.000000e+00 2237.0
3 TraesCS3D01G071400 chr7D 97.009 1304 34 1 1 1304 599239745 599238447 0.000000e+00 2187.0
4 TraesCS3D01G071400 chr4D 97.546 1304 32 0 1 1304 298273073 298274376 0.000000e+00 2231.0
5 TraesCS3D01G071400 chr7B 92.567 1305 97 0 1 1305 706500288 706501592 0.000000e+00 1873.0
6 TraesCS3D01G071400 chr7B 83.828 303 33 11 1722 2012 62876982 62877280 8.010000e-70 274.0
7 TraesCS3D01G071400 chr7B 81.132 318 38 13 1713 2012 421542571 421542884 3.780000e-58 235.0
8 TraesCS3D01G071400 chr1A 92.255 1304 101 0 1 1304 65652204 65650901 0.000000e+00 1849.0
9 TraesCS3D01G071400 chr1A 86.765 68 7 2 2201 2267 535033849 535033783 8.720000e-10 75.0
10 TraesCS3D01G071400 chr4B 93.939 1221 72 1 1 1221 605895610 605894392 0.000000e+00 1844.0
11 TraesCS3D01G071400 chr4B 81.579 304 31 19 1729 2015 332057417 332057712 6.320000e-56 228.0
12 TraesCS3D01G071400 chr6B 91.832 1310 106 1 1 1310 173438468 173437160 0.000000e+00 1825.0
13 TraesCS3D01G071400 chr6B 85.135 74 10 1 2201 2274 64516841 64516769 8.720000e-10 75.0
14 TraesCS3D01G071400 chr2B 94.346 1185 66 1 1 1185 683266695 683267878 0.000000e+00 1816.0
15 TraesCS3D01G071400 chr2B 83.168 303 35 11 1722 2012 23540546 23540844 1.730000e-66 263.0
16 TraesCS3D01G071400 chr2B 97.917 48 1 0 1257 1304 683268178 683268225 1.450000e-12 84.2
17 TraesCS3D01G071400 chr7A 91.564 1304 110 0 1 1304 79128437 79127134 0.000000e+00 1799.0
18 TraesCS3D01G071400 chr5A 83.828 303 33 11 1722 2012 410530166 410530464 8.010000e-70 274.0
19 TraesCS3D01G071400 chr4A 83.498 303 34 11 1722 2012 624365284 624365582 3.730000e-68 268.0
20 TraesCS3D01G071400 chr3B 83.333 306 35 11 1722 2015 199610364 199610063 3.730000e-68 268.0
21 TraesCS3D01G071400 chr3B 83.007 306 36 11 1722 2015 199554690 199554389 1.730000e-66 263.0
22 TraesCS3D01G071400 chr3B 88.889 72 8 0 2201 2272 769160980 769161051 3.110000e-14 89.8
23 TraesCS3D01G071400 chr3B 88.889 72 8 0 2201 2272 769188090 769188019 3.110000e-14 89.8
24 TraesCS3D01G071400 chr3B 87.143 70 9 0 2199 2268 63429530 63429599 1.870000e-11 80.5
25 TraesCS3D01G071400 chr5D 78.012 332 32 21 1722 2015 455749713 455750041 1.080000e-38 171.0
26 TraesCS3D01G071400 chr5D 85.135 74 11 0 2201 2274 460038047 460038120 2.420000e-10 76.8
27 TraesCS3D01G071400 chr3A 89.855 69 7 0 2200 2268 51541079 51541147 3.110000e-14 89.8
28 TraesCS3D01G071400 chr6A 92.727 55 3 1 2220 2274 35270358 35270305 6.740000e-11 78.7
29 TraesCS3D01G071400 chr1B 87.500 64 8 0 2205 2268 127252743 127252806 8.720000e-10 75.0
30 TraesCS3D01G071400 chr1B 100.000 28 0 0 2068 2095 317581070 317581043 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G071400 chr3D 31888685 31890960 2275 True 4204.0 4204 100.0000 1 2276 1 chr3D.!!$R1 2275
1 TraesCS3D01G071400 chr7D 544559151 544560454 1303 True 2237.0 2237 97.6230 1 1304 1 chr7D.!!$R1 1303
2 TraesCS3D01G071400 chr7D 599238447 599239745 1298 True 2187.0 2187 97.0090 1 1304 1 chr7D.!!$R2 1303
3 TraesCS3D01G071400 chr4D 298273073 298274376 1303 False 2231.0 2231 97.5460 1 1304 1 chr4D.!!$F1 1303
4 TraesCS3D01G071400 chr7B 706500288 706501592 1304 False 1873.0 1873 92.5670 1 1305 1 chr7B.!!$F3 1304
5 TraesCS3D01G071400 chr1A 65650901 65652204 1303 True 1849.0 1849 92.2550 1 1304 1 chr1A.!!$R1 1303
6 TraesCS3D01G071400 chr4B 605894392 605895610 1218 True 1844.0 1844 93.9390 1 1221 1 chr4B.!!$R1 1220
7 TraesCS3D01G071400 chr6B 173437160 173438468 1308 True 1825.0 1825 91.8320 1 1310 1 chr6B.!!$R2 1309
8 TraesCS3D01G071400 chr2B 683266695 683268225 1530 False 950.1 1816 96.1315 1 1304 2 chr2B.!!$F2 1303
9 TraesCS3D01G071400 chr7A 79127134 79128437 1303 True 1799.0 1799 91.5640 1 1304 1 chr7A.!!$R1 1303

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
505 511 1.989966 GCATTGCTCACATGCTCGCT 61.99 55.0 0.16 0.0 38.22 4.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1329 1563 0.039346 GCCCGACTCTACCGCTTATC 60.039 60.0 0.0 0.0 0.0 1.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 5.664908 ACCATCAAGATGTCTCCTCTGTTAT 59.335 40.000 9.04 0.00 37.11 1.89
79 80 4.273480 CCGTGAATGAATTGATAGACCCAC 59.727 45.833 0.00 0.00 0.00 4.61
80 81 5.118990 CGTGAATGAATTGATAGACCCACT 58.881 41.667 0.00 0.00 0.00 4.00
81 82 5.007039 CGTGAATGAATTGATAGACCCACTG 59.993 44.000 0.00 0.00 0.00 3.66
82 83 6.115446 GTGAATGAATTGATAGACCCACTGA 58.885 40.000 0.00 0.00 0.00 3.41
83 84 6.259608 GTGAATGAATTGATAGACCCACTGAG 59.740 42.308 0.00 0.00 0.00 3.35
505 511 1.989966 GCATTGCTCACATGCTCGCT 61.990 55.000 0.16 0.00 38.22 4.93
590 596 5.720371 TGGTCCAAAGACATTTTATGTGG 57.280 39.130 0.00 0.00 45.03 4.17
709 715 7.094634 GCATTGATCCTGTCTTTTCAGTAAGAA 60.095 37.037 0.00 0.00 36.01 2.52
1059 1065 1.649390 CTCGCTACACTGACCGCTCT 61.649 60.000 0.00 0.00 0.00 4.09
1195 1201 3.243602 TGCTTGTACGCTTTCTGTGACTA 60.244 43.478 0.00 0.00 0.00 2.59
1197 1203 4.210537 GCTTGTACGCTTTCTGTGACTAAA 59.789 41.667 0.00 0.00 0.00 1.85
1255 1489 2.408271 CCTATTGGCTGACTGCTCAA 57.592 50.000 4.20 7.34 42.39 3.02
1296 1530 2.192263 AGCTCTCTAAGGTTTCCCTGG 58.808 52.381 0.00 0.00 41.56 4.45
1319 1553 2.307934 AAAAGAGAGAGAGGATGCGC 57.692 50.000 0.00 0.00 0.00 6.09
1320 1554 0.463620 AAAGAGAGAGAGGATGCGCC 59.536 55.000 4.18 0.00 0.00 6.53
1328 1562 4.172512 AGGATGCGCCTCAGCAGG 62.173 66.667 14.77 0.00 46.97 4.85
1332 1566 2.763710 TGCGCCTCAGCAGGGATA 60.764 61.111 4.18 0.00 42.92 2.59
1333 1567 2.366393 TGCGCCTCAGCAGGGATAA 61.366 57.895 4.18 0.00 42.92 1.75
1334 1568 1.596477 GCGCCTCAGCAGGGATAAG 60.596 63.158 0.00 0.00 40.75 1.73
1335 1569 1.596477 CGCCTCAGCAGGGATAAGC 60.596 63.158 0.00 0.00 40.75 3.09
1336 1570 1.596477 GCCTCAGCAGGGATAAGCG 60.596 63.158 0.00 0.00 40.75 4.68
1337 1571 1.070445 CCTCAGCAGGGATAAGCGG 59.930 63.158 0.00 0.00 35.89 5.52
1338 1572 1.690219 CCTCAGCAGGGATAAGCGGT 61.690 60.000 0.00 0.00 35.89 5.68
1339 1573 1.040646 CTCAGCAGGGATAAGCGGTA 58.959 55.000 0.00 0.00 35.48 4.02
1340 1574 1.000283 CTCAGCAGGGATAAGCGGTAG 60.000 57.143 0.00 0.00 35.48 3.18
1341 1575 1.040646 CAGCAGGGATAAGCGGTAGA 58.959 55.000 0.00 0.00 35.48 2.59
1342 1576 1.000283 CAGCAGGGATAAGCGGTAGAG 60.000 57.143 0.00 0.00 35.48 2.43
1343 1577 1.041437 GCAGGGATAAGCGGTAGAGT 58.959 55.000 0.00 0.00 0.00 3.24
1344 1578 1.000052 GCAGGGATAAGCGGTAGAGTC 60.000 57.143 0.00 0.00 0.00 3.36
1345 1579 1.267261 CAGGGATAAGCGGTAGAGTCG 59.733 57.143 0.00 0.00 0.00 4.18
1346 1580 0.597072 GGGATAAGCGGTAGAGTCGG 59.403 60.000 0.00 0.00 0.00 4.79
1347 1581 0.597072 GGATAAGCGGTAGAGTCGGG 59.403 60.000 0.00 0.00 0.00 5.14
1348 1582 0.039346 GATAAGCGGTAGAGTCGGGC 60.039 60.000 0.00 0.00 0.00 6.13
1349 1583 1.793134 ATAAGCGGTAGAGTCGGGCG 61.793 60.000 0.00 0.00 0.00 6.13
1350 1584 2.874648 TAAGCGGTAGAGTCGGGCGA 62.875 60.000 0.00 0.00 0.00 5.54
1351 1585 4.549516 GCGGTAGAGTCGGGCGAC 62.550 72.222 0.00 0.00 44.86 5.19
1366 1600 4.189188 GACCTTAGCGGCGCGAGA 62.189 66.667 30.35 17.77 35.61 4.04
1367 1601 3.486252 GACCTTAGCGGCGCGAGAT 62.486 63.158 30.35 19.86 35.61 2.75
1368 1602 3.032609 CCTTAGCGGCGCGAGATG 61.033 66.667 30.35 19.87 0.00 2.90
1369 1603 2.278857 CTTAGCGGCGCGAGATGT 60.279 61.111 27.59 10.56 0.00 3.06
1370 1604 2.278596 TTAGCGGCGCGAGATGTC 60.279 61.111 27.59 0.00 0.00 3.06
1380 1614 3.389206 GAGATGTCGAACGCTGGC 58.611 61.111 0.00 0.00 0.00 4.85
1381 1615 2.507102 AGATGTCGAACGCTGGCG 60.507 61.111 13.56 13.56 46.03 5.69
1382 1616 3.554692 GATGTCGAACGCTGGCGG 61.555 66.667 18.99 1.88 44.69 6.13
1383 1617 4.373116 ATGTCGAACGCTGGCGGT 62.373 61.111 18.99 13.01 44.58 5.68
1384 1618 3.876589 ATGTCGAACGCTGGCGGTT 62.877 57.895 18.99 10.51 40.58 4.44
1385 1619 4.072088 GTCGAACGCTGGCGGTTG 62.072 66.667 18.99 16.20 40.58 3.77
1386 1620 4.595538 TCGAACGCTGGCGGTTGT 62.596 61.111 18.02 1.89 40.58 3.32
1387 1621 4.072088 CGAACGCTGGCGGTTGTC 62.072 66.667 18.99 9.38 40.58 3.18
1388 1622 4.072088 GAACGCTGGCGGTTGTCG 62.072 66.667 18.99 0.00 40.58 4.35
1389 1623 4.595538 AACGCTGGCGGTTGTCGA 62.596 61.111 18.99 0.00 44.69 4.20
1390 1624 3.876589 AACGCTGGCGGTTGTCGAT 62.877 57.895 18.99 0.00 44.69 3.59
1391 1625 3.853330 CGCTGGCGGTTGTCGATG 61.853 66.667 7.12 0.00 42.43 3.84
1392 1626 3.499737 GCTGGCGGTTGTCGATGG 61.500 66.667 0.00 0.00 42.43 3.51
1393 1627 2.264480 CTGGCGGTTGTCGATGGA 59.736 61.111 0.00 0.00 42.43 3.41
1394 1628 2.047655 TGGCGGTTGTCGATGGAC 60.048 61.111 0.12 0.12 43.71 4.02
1395 1629 2.818274 GGCGGTTGTCGATGGACC 60.818 66.667 5.33 0.00 42.73 4.46
1396 1630 2.818274 GCGGTTGTCGATGGACCC 60.818 66.667 5.33 0.00 42.73 4.46
1397 1631 2.125269 CGGTTGTCGATGGACCCC 60.125 66.667 5.33 4.70 42.73 4.95
1398 1632 2.271173 GGTTGTCGATGGACCCCC 59.729 66.667 5.33 1.56 42.73 5.40
1399 1633 2.298661 GGTTGTCGATGGACCCCCT 61.299 63.158 5.33 0.00 42.73 4.79
1400 1634 1.221021 GTTGTCGATGGACCCCCTC 59.779 63.158 5.33 0.00 42.73 4.30
1401 1635 1.993391 TTGTCGATGGACCCCCTCC 60.993 63.158 5.33 0.00 42.73 4.30
1402 1636 3.162154 GTCGATGGACCCCCTCCC 61.162 72.222 0.00 0.00 38.49 4.30
1403 1637 3.364964 TCGATGGACCCCCTCCCT 61.365 66.667 0.00 0.00 38.49 4.20
1404 1638 3.164269 CGATGGACCCCCTCCCTG 61.164 72.222 0.00 0.00 38.49 4.45
1405 1639 2.042930 GATGGACCCCCTCCCTGT 59.957 66.667 0.00 0.00 38.49 4.00
1406 1640 1.316969 GATGGACCCCCTCCCTGTA 59.683 63.158 0.00 0.00 38.49 2.74
1407 1641 1.004361 ATGGACCCCCTCCCTGTAC 59.996 63.158 0.00 0.00 38.49 2.90
1408 1642 1.537478 ATGGACCCCCTCCCTGTACT 61.537 60.000 0.00 0.00 38.49 2.73
1409 1643 1.082392 GGACCCCCTCCCTGTACTT 59.918 63.158 0.00 0.00 31.83 2.24
1410 1644 0.340908 GGACCCCCTCCCTGTACTTA 59.659 60.000 0.00 0.00 31.83 2.24
1411 1645 1.274011 GGACCCCCTCCCTGTACTTAA 60.274 57.143 0.00 0.00 31.83 1.85
1412 1646 2.117051 GACCCCCTCCCTGTACTTAAG 58.883 57.143 0.00 0.00 0.00 1.85
1413 1647 1.274242 ACCCCCTCCCTGTACTTAAGG 60.274 57.143 7.53 0.00 34.31 2.69
1414 1648 1.009183 CCCCCTCCCTGTACTTAAGGA 59.991 57.143 7.53 0.00 36.91 3.36
1415 1649 2.361504 CCCCCTCCCTGTACTTAAGGAT 60.362 54.545 7.53 0.00 36.91 3.24
1416 1650 3.394645 CCCCTCCCTGTACTTAAGGATT 58.605 50.000 7.53 0.00 36.91 3.01
1417 1651 3.786450 CCCCTCCCTGTACTTAAGGATTT 59.214 47.826 7.53 0.00 36.91 2.17
1418 1652 4.973211 CCCCTCCCTGTACTTAAGGATTTA 59.027 45.833 7.53 0.00 36.91 1.40
1419 1653 5.430745 CCCCTCCCTGTACTTAAGGATTTAA 59.569 44.000 7.53 0.00 36.91 1.52
1421 1655 6.386050 CCCTCCCTGTACTTAAGGATTTAAGA 59.614 42.308 7.53 0.00 45.63 2.10
1422 1656 7.072581 CCCTCCCTGTACTTAAGGATTTAAGAT 59.927 40.741 7.53 2.32 45.63 2.40
1423 1657 8.495260 CCTCCCTGTACTTAAGGATTTAAGATT 58.505 37.037 7.53 0.00 45.63 2.40
1424 1658 9.907229 CTCCCTGTACTTAAGGATTTAAGATTT 57.093 33.333 7.53 0.00 45.63 2.17
1425 1659 9.681062 TCCCTGTACTTAAGGATTTAAGATTTG 57.319 33.333 7.53 2.74 45.63 2.32
1426 1660 9.681062 CCCTGTACTTAAGGATTTAAGATTTGA 57.319 33.333 7.53 0.00 45.63 2.69
1436 1670 9.807649 AAGGATTTAAGATTTGATTTTGATCGG 57.192 29.630 0.00 0.00 0.00 4.18
1437 1671 7.922811 AGGATTTAAGATTTGATTTTGATCGGC 59.077 33.333 0.00 0.00 0.00 5.54
1438 1672 7.169813 GGATTTAAGATTTGATTTTGATCGGCC 59.830 37.037 0.00 0.00 0.00 6.13
1439 1673 6.522625 TTAAGATTTGATTTTGATCGGCCA 57.477 33.333 2.24 0.00 0.00 5.36
1440 1674 5.404466 AAGATTTGATTTTGATCGGCCAA 57.596 34.783 2.24 0.00 0.00 4.52
1441 1675 5.404466 AGATTTGATTTTGATCGGCCAAA 57.596 34.783 2.24 0.00 34.56 3.28
1442 1676 5.413499 AGATTTGATTTTGATCGGCCAAAG 58.587 37.500 2.24 0.00 37.34 2.77
1443 1677 3.591196 TTGATTTTGATCGGCCAAAGG 57.409 42.857 2.24 0.00 37.34 3.11
1444 1678 2.524306 TGATTTTGATCGGCCAAAGGT 58.476 42.857 2.24 0.00 37.34 3.50
1445 1679 2.896685 TGATTTTGATCGGCCAAAGGTT 59.103 40.909 2.24 0.00 37.34 3.50
1446 1680 3.323403 TGATTTTGATCGGCCAAAGGTTT 59.677 39.130 2.24 0.00 37.34 3.27
1447 1681 2.810439 TTTGATCGGCCAAAGGTTTG 57.190 45.000 2.24 0.00 37.90 2.93
1459 1693 2.926838 CAAAGGTTTGGTTGTTGGTTCG 59.073 45.455 0.00 0.00 34.59 3.95
1460 1694 0.458260 AGGTTTGGTTGTTGGTTCGC 59.542 50.000 0.00 0.00 0.00 4.70
1461 1695 0.458260 GGTTTGGTTGTTGGTTCGCT 59.542 50.000 0.00 0.00 0.00 4.93
1462 1696 1.134936 GGTTTGGTTGTTGGTTCGCTT 60.135 47.619 0.00 0.00 0.00 4.68
1463 1697 2.190161 GTTTGGTTGTTGGTTCGCTTC 58.810 47.619 0.00 0.00 0.00 3.86
1464 1698 0.378962 TTGGTTGTTGGTTCGCTTCG 59.621 50.000 0.00 0.00 0.00 3.79
1465 1699 0.745128 TGGTTGTTGGTTCGCTTCGT 60.745 50.000 0.00 0.00 0.00 3.85
1466 1700 0.316689 GGTTGTTGGTTCGCTTCGTG 60.317 55.000 0.00 0.00 0.00 4.35
1467 1701 0.375803 GTTGTTGGTTCGCTTCGTGT 59.624 50.000 0.00 0.00 0.00 4.49
1468 1702 1.593933 GTTGTTGGTTCGCTTCGTGTA 59.406 47.619 0.00 0.00 0.00 2.90
1469 1703 1.493772 TGTTGGTTCGCTTCGTGTAG 58.506 50.000 0.00 0.00 0.00 2.74
1470 1704 1.202440 TGTTGGTTCGCTTCGTGTAGT 60.202 47.619 0.00 0.00 0.00 2.73
1471 1705 1.191647 GTTGGTTCGCTTCGTGTAGTG 59.808 52.381 0.00 0.00 0.00 2.74
1472 1706 0.942410 TGGTTCGCTTCGTGTAGTGC 60.942 55.000 0.00 0.00 0.00 4.40
1473 1707 0.666577 GGTTCGCTTCGTGTAGTGCT 60.667 55.000 0.00 0.00 0.00 4.40
1474 1708 0.435008 GTTCGCTTCGTGTAGTGCTG 59.565 55.000 0.00 0.00 0.00 4.41
1475 1709 0.312729 TTCGCTTCGTGTAGTGCTGA 59.687 50.000 0.00 0.00 0.00 4.26
1476 1710 0.526211 TCGCTTCGTGTAGTGCTGAT 59.474 50.000 0.00 0.00 0.00 2.90
1477 1711 0.917259 CGCTTCGTGTAGTGCTGATC 59.083 55.000 0.00 0.00 0.00 2.92
1478 1712 1.281899 GCTTCGTGTAGTGCTGATCC 58.718 55.000 0.00 0.00 0.00 3.36
1479 1713 1.404181 GCTTCGTGTAGTGCTGATCCA 60.404 52.381 0.00 0.00 0.00 3.41
1480 1714 2.263077 CTTCGTGTAGTGCTGATCCAC 58.737 52.381 0.00 0.00 35.98 4.02
1481 1715 2.653742 CGTGTAGTGCTGATCCACG 58.346 57.895 4.45 4.45 42.19 4.94
1482 1716 0.109272 CGTGTAGTGCTGATCCACGT 60.109 55.000 9.39 0.00 42.72 4.49
1483 1717 1.350193 GTGTAGTGCTGATCCACGTG 58.650 55.000 9.08 9.08 40.59 4.49
1484 1718 0.246360 TGTAGTGCTGATCCACGTGG 59.754 55.000 29.26 29.26 40.59 4.94
1485 1719 0.246635 GTAGTGCTGATCCACGTGGT 59.753 55.000 32.74 20.61 40.59 4.16
1486 1720 0.530744 TAGTGCTGATCCACGTGGTC 59.469 55.000 32.74 26.84 40.59 4.02
1487 1721 1.741770 GTGCTGATCCACGTGGTCC 60.742 63.158 32.74 24.30 36.34 4.46
1488 1722 1.913262 TGCTGATCCACGTGGTCCT 60.913 57.895 32.74 19.14 36.34 3.85
1489 1723 1.296715 GCTGATCCACGTGGTCCTT 59.703 57.895 32.74 16.82 36.34 3.36
1490 1724 0.321653 GCTGATCCACGTGGTCCTTT 60.322 55.000 32.74 14.39 36.34 3.11
1491 1725 1.882352 GCTGATCCACGTGGTCCTTTT 60.882 52.381 32.74 12.67 36.34 2.27
1492 1726 2.504367 CTGATCCACGTGGTCCTTTTT 58.496 47.619 32.74 10.98 36.34 1.94
1516 1750 3.455152 AGCACTGCTCCACGTGTA 58.545 55.556 15.65 0.00 30.62 2.90
1517 1751 1.745890 AGCACTGCTCCACGTGTAA 59.254 52.632 15.65 0.89 30.62 2.41
1518 1752 0.321671 AGCACTGCTCCACGTGTAAT 59.678 50.000 15.65 0.00 30.62 1.89
1519 1753 0.721718 GCACTGCTCCACGTGTAATC 59.278 55.000 15.65 1.18 33.78 1.75
1520 1754 1.673033 GCACTGCTCCACGTGTAATCT 60.673 52.381 15.65 0.00 33.78 2.40
1521 1755 1.995484 CACTGCTCCACGTGTAATCTG 59.005 52.381 15.65 7.15 0.00 2.90
1522 1756 1.066858 ACTGCTCCACGTGTAATCTGG 60.067 52.381 15.65 0.00 0.00 3.86
1523 1757 0.249120 TGCTCCACGTGTAATCTGGG 59.751 55.000 15.65 0.00 0.00 4.45
1524 1758 0.535335 GCTCCACGTGTAATCTGGGA 59.465 55.000 15.65 0.41 0.00 4.37
1525 1759 1.139058 GCTCCACGTGTAATCTGGGAT 59.861 52.381 15.65 0.00 0.00 3.85
1526 1760 2.826428 CTCCACGTGTAATCTGGGATG 58.174 52.381 15.65 0.00 0.00 3.51
1527 1761 2.430694 CTCCACGTGTAATCTGGGATGA 59.569 50.000 15.65 0.00 0.00 2.92
1528 1762 2.430694 TCCACGTGTAATCTGGGATGAG 59.569 50.000 15.65 0.00 0.00 2.90
1529 1763 2.430694 CCACGTGTAATCTGGGATGAGA 59.569 50.000 15.65 0.00 0.00 3.27
1530 1764 3.118775 CCACGTGTAATCTGGGATGAGAA 60.119 47.826 15.65 0.00 0.00 2.87
1531 1765 4.503910 CACGTGTAATCTGGGATGAGAAA 58.496 43.478 7.58 0.00 0.00 2.52
1532 1766 4.935205 CACGTGTAATCTGGGATGAGAAAA 59.065 41.667 7.58 0.00 0.00 2.29
1533 1767 5.586243 CACGTGTAATCTGGGATGAGAAAAT 59.414 40.000 7.58 0.00 0.00 1.82
1534 1768 6.094048 CACGTGTAATCTGGGATGAGAAAATT 59.906 38.462 7.58 0.00 0.00 1.82
1535 1769 6.094048 ACGTGTAATCTGGGATGAGAAAATTG 59.906 38.462 0.00 0.00 0.00 2.32
1536 1770 6.268566 GTGTAATCTGGGATGAGAAAATTGC 58.731 40.000 0.00 0.00 0.00 3.56
1537 1771 5.951148 TGTAATCTGGGATGAGAAAATTGCA 59.049 36.000 0.00 0.00 0.00 4.08
1538 1772 4.996788 ATCTGGGATGAGAAAATTGCAC 57.003 40.909 0.00 0.00 0.00 4.57
1539 1773 3.765381 TCTGGGATGAGAAAATTGCACA 58.235 40.909 0.00 0.00 0.00 4.57
1540 1774 3.760151 TCTGGGATGAGAAAATTGCACAG 59.240 43.478 0.00 0.00 0.00 3.66
1541 1775 2.827322 TGGGATGAGAAAATTGCACAGG 59.173 45.455 0.00 0.00 0.00 4.00
1542 1776 2.417787 GGGATGAGAAAATTGCACAGGC 60.418 50.000 0.00 0.00 41.68 4.85
1543 1777 2.494870 GGATGAGAAAATTGCACAGGCT 59.505 45.455 0.00 0.00 41.91 4.58
1544 1778 3.056322 GGATGAGAAAATTGCACAGGCTT 60.056 43.478 0.00 0.00 41.91 4.35
1545 1779 4.158394 GGATGAGAAAATTGCACAGGCTTA 59.842 41.667 0.00 0.00 41.91 3.09
1546 1780 4.771590 TGAGAAAATTGCACAGGCTTAG 57.228 40.909 0.00 0.00 41.91 2.18
1547 1781 3.507233 TGAGAAAATTGCACAGGCTTAGG 59.493 43.478 0.00 0.00 41.91 2.69
1548 1782 2.827921 AGAAAATTGCACAGGCTTAGGG 59.172 45.455 0.00 0.00 41.91 3.53
1549 1783 0.897621 AAATTGCACAGGCTTAGGGC 59.102 50.000 0.00 0.00 41.91 5.19
1550 1784 0.251742 AATTGCACAGGCTTAGGGCA 60.252 50.000 0.00 0.00 44.01 5.36
1551 1785 0.967380 ATTGCACAGGCTTAGGGCAC 60.967 55.000 0.59 0.00 44.01 5.01
1552 1786 2.034066 GCACAGGCTTAGGGCACA 59.966 61.111 0.10 0.00 44.01 4.57
1553 1787 1.603455 GCACAGGCTTAGGGCACAA 60.603 57.895 0.10 0.00 44.01 3.33
1554 1788 1.866853 GCACAGGCTTAGGGCACAAC 61.867 60.000 0.10 0.00 44.01 3.32
1555 1789 0.537143 CACAGGCTTAGGGCACAACA 60.537 55.000 0.10 0.00 44.01 3.33
1556 1790 0.184933 ACAGGCTTAGGGCACAACAA 59.815 50.000 0.10 0.00 44.01 2.83
1557 1791 0.883833 CAGGCTTAGGGCACAACAAG 59.116 55.000 0.10 0.00 44.01 3.16
1558 1792 0.251341 AGGCTTAGGGCACAACAAGG 60.251 55.000 0.10 0.00 44.01 3.61
1559 1793 1.250840 GGCTTAGGGCACAACAAGGG 61.251 60.000 0.00 0.00 44.01 3.95
1560 1794 0.539669 GCTTAGGGCACAACAAGGGT 60.540 55.000 0.00 0.00 41.35 4.34
1561 1795 1.271707 GCTTAGGGCACAACAAGGGTA 60.272 52.381 0.00 0.00 41.35 3.69
1562 1796 2.816337 GCTTAGGGCACAACAAGGGTAA 60.816 50.000 0.00 0.00 41.35 2.85
1563 1797 3.492337 CTTAGGGCACAACAAGGGTAAA 58.508 45.455 0.00 0.00 0.00 2.01
1564 1798 2.463047 AGGGCACAACAAGGGTAAAA 57.537 45.000 0.00 0.00 0.00 1.52
1565 1799 2.970987 AGGGCACAACAAGGGTAAAAT 58.029 42.857 0.00 0.00 0.00 1.82
1566 1800 2.897326 AGGGCACAACAAGGGTAAAATC 59.103 45.455 0.00 0.00 0.00 2.17
1567 1801 2.897326 GGGCACAACAAGGGTAAAATCT 59.103 45.455 0.00 0.00 0.00 2.40
1568 1802 3.323691 GGGCACAACAAGGGTAAAATCTT 59.676 43.478 0.00 0.00 0.00 2.40
1569 1803 4.202315 GGGCACAACAAGGGTAAAATCTTT 60.202 41.667 0.00 0.00 0.00 2.52
1570 1804 5.364778 GGCACAACAAGGGTAAAATCTTTT 58.635 37.500 0.00 0.00 0.00 2.27
1571 1805 6.463190 GGGCACAACAAGGGTAAAATCTTTTA 60.463 38.462 0.00 0.00 0.00 1.52
1572 1806 6.645003 GGCACAACAAGGGTAAAATCTTTTAG 59.355 38.462 0.00 0.00 33.66 1.85
1573 1807 7.430441 GCACAACAAGGGTAAAATCTTTTAGA 58.570 34.615 0.00 0.00 33.66 2.10
1574 1808 7.923878 GCACAACAAGGGTAAAATCTTTTAGAA 59.076 33.333 0.00 0.00 33.66 2.10
1575 1809 9.981114 CACAACAAGGGTAAAATCTTTTAGAAT 57.019 29.630 0.00 0.00 33.66 2.40
1579 1813 8.967918 ACAAGGGTAAAATCTTTTAGAATAGCC 58.032 33.333 0.00 0.00 33.66 3.93
1580 1814 8.414003 CAAGGGTAAAATCTTTTAGAATAGCCC 58.586 37.037 7.80 7.80 33.62 5.19
1581 1815 7.883823 AGGGTAAAATCTTTTAGAATAGCCCT 58.116 34.615 10.83 10.83 37.15 5.19
1582 1816 7.999545 AGGGTAAAATCTTTTAGAATAGCCCTC 59.000 37.037 10.83 0.00 37.28 4.30
1583 1817 7.230913 GGGTAAAATCTTTTAGAATAGCCCTCC 59.769 40.741 8.31 0.00 32.73 4.30
1584 1818 7.999545 GGTAAAATCTTTTAGAATAGCCCTCCT 59.000 37.037 0.00 0.00 33.66 3.69
1585 1819 9.058174 GTAAAATCTTTTAGAATAGCCCTCCTC 57.942 37.037 0.00 0.00 33.66 3.71
1586 1820 5.834281 ATCTTTTAGAATAGCCCTCCTCC 57.166 43.478 0.00 0.00 0.00 4.30
1587 1821 4.897051 TCTTTTAGAATAGCCCTCCTCCT 58.103 43.478 0.00 0.00 0.00 3.69
1588 1822 4.656112 TCTTTTAGAATAGCCCTCCTCCTG 59.344 45.833 0.00 0.00 0.00 3.86
1589 1823 2.704190 TAGAATAGCCCTCCTCCTGG 57.296 55.000 0.00 0.00 0.00 4.45
1590 1824 0.644937 AGAATAGCCCTCCTCCTGGT 59.355 55.000 0.00 0.00 34.23 4.00
1591 1825 1.010170 AGAATAGCCCTCCTCCTGGTT 59.990 52.381 0.00 0.00 34.23 3.67
1592 1826 1.418264 GAATAGCCCTCCTCCTGGTTC 59.582 57.143 0.00 0.00 34.23 3.62
1593 1827 0.343372 ATAGCCCTCCTCCTGGTTCA 59.657 55.000 0.00 0.00 34.23 3.18
1594 1828 0.617820 TAGCCCTCCTCCTGGTTCAC 60.618 60.000 0.00 0.00 34.23 3.18
1595 1829 1.920835 GCCCTCCTCCTGGTTCACT 60.921 63.158 0.00 0.00 34.23 3.41
1596 1830 0.617820 GCCCTCCTCCTGGTTCACTA 60.618 60.000 0.00 0.00 34.23 2.74
1597 1831 1.972207 GCCCTCCTCCTGGTTCACTAT 60.972 57.143 0.00 0.00 34.23 2.12
1598 1832 2.693074 GCCCTCCTCCTGGTTCACTATA 60.693 54.545 0.00 0.00 34.23 1.31
1599 1833 3.863086 CCCTCCTCCTGGTTCACTATAT 58.137 50.000 0.00 0.00 34.23 0.86
1600 1834 4.756372 GCCCTCCTCCTGGTTCACTATATA 60.756 50.000 0.00 0.00 34.23 0.86
1601 1835 5.594777 CCCTCCTCCTGGTTCACTATATAT 58.405 45.833 0.00 0.00 34.23 0.86
1602 1836 6.742756 CCCTCCTCCTGGTTCACTATATATA 58.257 44.000 0.00 0.00 34.23 0.86
1603 1837 7.366226 CCCTCCTCCTGGTTCACTATATATAT 58.634 42.308 0.00 0.00 34.23 0.86
1604 1838 8.511969 CCCTCCTCCTGGTTCACTATATATATA 58.488 40.741 2.49 2.49 34.23 0.86
1728 1962 5.909621 ATATAATAGGCGTCCGTACATGT 57.090 39.130 2.69 2.69 0.00 3.21
1729 1963 8.681486 ATATATAATAGGCGTCCGTACATGTA 57.319 34.615 0.08 0.08 0.00 2.29
1730 1964 5.710513 ATAATAGGCGTCCGTACATGTAA 57.289 39.130 7.25 0.00 0.00 2.41
1731 1965 4.595762 AATAGGCGTCCGTACATGTAAT 57.404 40.909 7.25 0.00 0.00 1.89
1732 1966 2.503920 AGGCGTCCGTACATGTAATC 57.496 50.000 7.25 0.00 0.00 1.75
1733 1967 2.029623 AGGCGTCCGTACATGTAATCT 58.970 47.619 7.25 0.00 0.00 2.40
1734 1968 2.124903 GGCGTCCGTACATGTAATCTG 58.875 52.381 7.25 0.00 0.00 2.90
1735 1969 2.223641 GGCGTCCGTACATGTAATCTGA 60.224 50.000 7.25 0.00 0.00 3.27
1736 1970 3.552273 GGCGTCCGTACATGTAATCTGAT 60.552 47.826 7.25 0.00 0.00 2.90
1737 1971 3.669122 GCGTCCGTACATGTAATCTGATC 59.331 47.826 7.25 0.00 0.00 2.92
1738 1972 4.791734 GCGTCCGTACATGTAATCTGATCA 60.792 45.833 7.25 0.00 0.00 2.92
1739 1973 4.675565 CGTCCGTACATGTAATCTGATCAC 59.324 45.833 7.25 0.00 0.00 3.06
1740 1974 5.505819 CGTCCGTACATGTAATCTGATCACT 60.506 44.000 7.25 0.00 0.00 3.41
1741 1975 6.273825 GTCCGTACATGTAATCTGATCACTT 58.726 40.000 7.25 0.00 0.00 3.16
1742 1976 7.423199 GTCCGTACATGTAATCTGATCACTTA 58.577 38.462 7.25 0.00 0.00 2.24
1743 1977 7.378995 GTCCGTACATGTAATCTGATCACTTAC 59.621 40.741 7.25 13.15 0.00 2.34
1744 1978 6.641314 CCGTACATGTAATCTGATCACTTACC 59.359 42.308 7.25 4.81 0.00 2.85
1745 1979 7.200455 CGTACATGTAATCTGATCACTTACCA 58.800 38.462 7.25 8.37 0.00 3.25
1746 1980 7.167635 CGTACATGTAATCTGATCACTTACCAC 59.832 40.741 7.25 10.09 0.00 4.16
1747 1981 6.946340 ACATGTAATCTGATCACTTACCACA 58.054 36.000 15.74 6.72 0.00 4.17
1748 1982 6.818644 ACATGTAATCTGATCACTTACCACAC 59.181 38.462 15.74 1.02 0.00 3.82
1749 1983 6.353404 TGTAATCTGATCACTTACCACACA 57.647 37.500 15.74 2.97 0.00 3.72
1750 1984 6.163476 TGTAATCTGATCACTTACCACACAC 58.837 40.000 15.74 0.00 0.00 3.82
1751 1985 3.678056 TCTGATCACTTACCACACACC 57.322 47.619 0.00 0.00 0.00 4.16
1752 1986 2.969262 TCTGATCACTTACCACACACCA 59.031 45.455 0.00 0.00 0.00 4.17
1753 1987 3.389656 TCTGATCACTTACCACACACCAA 59.610 43.478 0.00 0.00 0.00 3.67
1754 1988 4.133820 CTGATCACTTACCACACACCAAA 58.866 43.478 0.00 0.00 0.00 3.28
1755 1989 4.527944 TGATCACTTACCACACACCAAAA 58.472 39.130 0.00 0.00 0.00 2.44
1756 1990 4.950475 TGATCACTTACCACACACCAAAAA 59.050 37.500 0.00 0.00 0.00 1.94
1757 1991 5.596361 TGATCACTTACCACACACCAAAAAT 59.404 36.000 0.00 0.00 0.00 1.82
1758 1992 5.923733 TCACTTACCACACACCAAAAATT 57.076 34.783 0.00 0.00 0.00 1.82
1759 1993 6.287589 TCACTTACCACACACCAAAAATTT 57.712 33.333 0.00 0.00 0.00 1.82
1760 1994 7.406031 TCACTTACCACACACCAAAAATTTA 57.594 32.000 0.00 0.00 0.00 1.40
1761 1995 7.837863 TCACTTACCACACACCAAAAATTTAA 58.162 30.769 0.00 0.00 0.00 1.52
1762 1996 8.478877 TCACTTACCACACACCAAAAATTTAAT 58.521 29.630 0.00 0.00 0.00 1.40
1763 1997 9.103861 CACTTACCACACACCAAAAATTTAATT 57.896 29.630 0.00 0.00 0.00 1.40
1764 1998 9.674068 ACTTACCACACACCAAAAATTTAATTT 57.326 25.926 0.00 0.00 0.00 1.82
1768 2002 8.563732 ACCACACACCAAAAATTTAATTTATGC 58.436 29.630 3.17 0.00 0.00 3.14
1769 2003 8.562892 CCACACACCAAAAATTTAATTTATGCA 58.437 29.630 3.17 0.00 0.00 3.96
1785 2019 6.718454 TTTATGCATTTATGTGTTTGTGCC 57.282 33.333 3.54 0.00 0.00 5.01
1786 2020 4.540359 ATGCATTTATGTGTTTGTGCCT 57.460 36.364 0.00 0.00 0.00 4.75
1787 2021 4.333913 TGCATTTATGTGTTTGTGCCTT 57.666 36.364 0.00 0.00 0.00 4.35
1788 2022 4.701765 TGCATTTATGTGTTTGTGCCTTT 58.298 34.783 0.00 0.00 0.00 3.11
1789 2023 5.121811 TGCATTTATGTGTTTGTGCCTTTT 58.878 33.333 0.00 0.00 0.00 2.27
1790 2024 6.283694 TGCATTTATGTGTTTGTGCCTTTTA 58.716 32.000 0.00 0.00 0.00 1.52
1791 2025 6.201806 TGCATTTATGTGTTTGTGCCTTTTAC 59.798 34.615 0.00 0.00 0.00 2.01
1792 2026 6.201806 GCATTTATGTGTTTGTGCCTTTTACA 59.798 34.615 0.00 0.00 0.00 2.41
1793 2027 7.254590 GCATTTATGTGTTTGTGCCTTTTACAA 60.255 33.333 0.00 0.00 36.34 2.41
1794 2028 8.607459 CATTTATGTGTTTGTGCCTTTTACAAA 58.393 29.630 0.00 0.00 43.50 2.83
1795 2029 8.723942 TTTATGTGTTTGTGCCTTTTACAAAT 57.276 26.923 6.58 0.00 46.14 2.32
1796 2030 6.601741 ATGTGTTTGTGCCTTTTACAAATG 57.398 33.333 6.58 0.00 46.14 2.32
1797 2031 5.482908 TGTGTTTGTGCCTTTTACAAATGT 58.517 33.333 6.58 0.00 46.14 2.71
1798 2032 5.578727 TGTGTTTGTGCCTTTTACAAATGTC 59.421 36.000 6.58 2.65 46.14 3.06
1799 2033 5.578727 GTGTTTGTGCCTTTTACAAATGTCA 59.421 36.000 6.58 0.00 46.14 3.58
1800 2034 6.257630 GTGTTTGTGCCTTTTACAAATGTCAT 59.742 34.615 6.58 0.00 46.14 3.06
1801 2035 6.257411 TGTTTGTGCCTTTTACAAATGTCATG 59.743 34.615 6.58 0.00 46.14 3.07
1802 2036 5.528043 TGTGCCTTTTACAAATGTCATGT 57.472 34.783 0.00 0.00 34.81 3.21
1803 2037 6.641169 TGTGCCTTTTACAAATGTCATGTA 57.359 33.333 0.00 0.00 32.27 2.29
1804 2038 6.676950 TGTGCCTTTTACAAATGTCATGTAG 58.323 36.000 0.00 0.00 34.92 2.74
1805 2039 6.264292 TGTGCCTTTTACAAATGTCATGTAGT 59.736 34.615 0.00 0.00 34.92 2.73
1806 2040 7.145323 GTGCCTTTTACAAATGTCATGTAGTT 58.855 34.615 0.00 0.00 34.92 2.24
1807 2041 7.651704 GTGCCTTTTACAAATGTCATGTAGTTT 59.348 33.333 0.00 0.00 34.92 2.66
1808 2042 8.200792 TGCCTTTTACAAATGTCATGTAGTTTT 58.799 29.630 0.00 0.00 34.92 2.43
1809 2043 9.685828 GCCTTTTACAAATGTCATGTAGTTTTA 57.314 29.630 0.00 0.00 34.92 1.52
1899 2133 9.598517 AAAATGTTCATACAAGTTGAAACATGT 57.401 25.926 20.42 16.08 42.66 3.21
1900 2134 9.598517 AAATGTTCATACAAGTTGAAACATGTT 57.401 25.926 20.42 4.92 40.76 2.71
1901 2135 8.801715 ATGTTCATACAAGTTGAAACATGTTC 57.198 30.769 12.39 6.33 40.76 3.18
1902 2136 7.766283 TGTTCATACAAGTTGAAACATGTTCA 58.234 30.769 12.39 8.91 40.76 3.18
1903 2137 7.700234 TGTTCATACAAGTTGAAACATGTTCAC 59.300 33.333 12.39 9.24 40.76 3.18
1904 2138 6.734137 TCATACAAGTTGAAACATGTTCACC 58.266 36.000 12.39 4.68 40.76 4.02
1905 2139 4.385358 ACAAGTTGAAACATGTTCACCC 57.615 40.909 12.39 2.69 37.55 4.61
1906 2140 4.023291 ACAAGTTGAAACATGTTCACCCT 58.977 39.130 12.39 3.41 37.55 4.34
1907 2141 4.142182 ACAAGTTGAAACATGTTCACCCTG 60.142 41.667 12.39 11.18 37.55 4.45
1908 2142 3.631250 AGTTGAAACATGTTCACCCTGT 58.369 40.909 12.39 0.00 0.00 4.00
1909 2143 4.787551 AGTTGAAACATGTTCACCCTGTA 58.212 39.130 12.39 0.00 0.00 2.74
1910 2144 4.578928 AGTTGAAACATGTTCACCCTGTAC 59.421 41.667 12.39 6.00 0.00 2.90
1911 2145 4.431416 TGAAACATGTTCACCCTGTACT 57.569 40.909 12.39 0.00 0.00 2.73
1912 2146 5.554437 TGAAACATGTTCACCCTGTACTA 57.446 39.130 12.39 0.00 0.00 1.82
1913 2147 6.121776 TGAAACATGTTCACCCTGTACTAT 57.878 37.500 12.39 0.00 0.00 2.12
1914 2148 6.539173 TGAAACATGTTCACCCTGTACTATT 58.461 36.000 12.39 0.00 0.00 1.73
1915 2149 7.681679 TGAAACATGTTCACCCTGTACTATTA 58.318 34.615 12.39 0.00 0.00 0.98
1916 2150 8.158132 TGAAACATGTTCACCCTGTACTATTAA 58.842 33.333 12.39 0.00 0.00 1.40
1917 2151 8.927675 AAACATGTTCACCCTGTACTATTAAA 57.072 30.769 12.39 0.00 0.00 1.52
1918 2152 8.927675 AACATGTTCACCCTGTACTATTAAAA 57.072 30.769 4.92 0.00 0.00 1.52
1919 2153 9.528489 AACATGTTCACCCTGTACTATTAAAAT 57.472 29.630 4.92 0.00 0.00 1.82
1920 2154 9.528489 ACATGTTCACCCTGTACTATTAAAATT 57.472 29.630 0.00 0.00 0.00 1.82
1922 2156 9.747898 ATGTTCACCCTGTACTATTAAAATTCA 57.252 29.630 0.00 0.00 0.00 2.57
1923 2157 9.747898 TGTTCACCCTGTACTATTAAAATTCAT 57.252 29.630 0.00 0.00 0.00 2.57
1925 2159 9.747898 TTCACCCTGTACTATTAAAATTCATGT 57.252 29.630 0.00 0.00 0.00 3.21
1926 2160 9.173021 TCACCCTGTACTATTAAAATTCATGTG 57.827 33.333 0.00 0.00 0.00 3.21
1927 2161 9.173021 CACCCTGTACTATTAAAATTCATGTGA 57.827 33.333 0.00 0.00 0.00 3.58
1928 2162 9.920946 ACCCTGTACTATTAAAATTCATGTGAT 57.079 29.630 0.00 0.00 0.00 3.06
1943 2177 8.853077 ATTCATGTGATTCTAAGAAGTGTTCA 57.147 30.769 0.00 0.00 0.00 3.18
1944 2178 7.658179 TCATGTGATTCTAAGAAGTGTTCAC 57.342 36.000 0.00 0.00 0.00 3.18
1945 2179 7.216494 TCATGTGATTCTAAGAAGTGTTCACA 58.784 34.615 13.04 13.04 39.41 3.58
1946 2180 7.879677 TCATGTGATTCTAAGAAGTGTTCACAT 59.120 33.333 15.20 15.20 44.04 3.21
1947 2181 7.425577 TGTGATTCTAAGAAGTGTTCACATG 57.574 36.000 5.74 0.00 31.76 3.21
1948 2182 6.073058 TGTGATTCTAAGAAGTGTTCACATGC 60.073 38.462 5.74 0.00 31.76 4.06
1949 2183 6.148480 GTGATTCTAAGAAGTGTTCACATGCT 59.852 38.462 5.74 0.00 0.00 3.79
1950 2184 6.712095 TGATTCTAAGAAGTGTTCACATGCTT 59.288 34.615 5.74 7.64 0.00 3.91
1951 2185 7.877612 TGATTCTAAGAAGTGTTCACATGCTTA 59.122 33.333 5.74 8.24 0.00 3.09
1952 2186 8.621532 ATTCTAAGAAGTGTTCACATGCTTAA 57.378 30.769 5.74 0.13 0.00 1.85
1953 2187 8.445275 TTCTAAGAAGTGTTCACATGCTTAAA 57.555 30.769 5.74 5.17 0.00 1.52
1954 2188 8.445275 TCTAAGAAGTGTTCACATGCTTAAAA 57.555 30.769 5.74 0.48 0.00 1.52
1955 2189 8.898761 TCTAAGAAGTGTTCACATGCTTAAAAA 58.101 29.630 5.74 0.00 0.00 1.94
1956 2190 9.683069 CTAAGAAGTGTTCACATGCTTAAAAAT 57.317 29.630 5.74 0.00 0.00 1.82
2018 2252 8.336801 AGTCCATGTGATTTAAAAAGTACTCC 57.663 34.615 0.00 0.00 0.00 3.85
2019 2253 7.393515 AGTCCATGTGATTTAAAAAGTACTCCC 59.606 37.037 0.00 0.00 0.00 4.30
2020 2254 7.393515 GTCCATGTGATTTAAAAAGTACTCCCT 59.606 37.037 0.00 0.00 0.00 4.20
2021 2255 7.610305 TCCATGTGATTTAAAAAGTACTCCCTC 59.390 37.037 0.00 0.00 0.00 4.30
2022 2256 7.611855 CCATGTGATTTAAAAAGTACTCCCTCT 59.388 37.037 0.00 0.00 0.00 3.69
2023 2257 9.667107 CATGTGATTTAAAAAGTACTCCCTCTA 57.333 33.333 0.00 0.00 0.00 2.43
2056 2290 8.951954 AATATAAGAGTGTTTAGATCGCTACG 57.048 34.615 0.00 0.00 0.00 3.51
2057 2291 4.959596 AAGAGTGTTTAGATCGCTACGA 57.040 40.909 0.00 0.00 41.13 3.43
2058 2292 4.959596 AGAGTGTTTAGATCGCTACGAA 57.040 40.909 0.00 0.00 39.99 3.85
2059 2293 5.306532 AGAGTGTTTAGATCGCTACGAAA 57.693 39.130 0.00 0.00 39.99 3.46
2060 2294 5.892568 AGAGTGTTTAGATCGCTACGAAAT 58.107 37.500 0.00 0.00 39.99 2.17
2061 2295 7.024340 AGAGTGTTTAGATCGCTACGAAATA 57.976 36.000 0.00 0.00 39.99 1.40
2062 2296 7.478322 AGAGTGTTTAGATCGCTACGAAATAA 58.522 34.615 0.00 0.00 39.99 1.40
2063 2297 7.972277 AGAGTGTTTAGATCGCTACGAAATAAA 59.028 33.333 0.00 0.48 39.99 1.40
2064 2298 7.892803 AGTGTTTAGATCGCTACGAAATAAAC 58.107 34.615 21.25 21.25 43.20 2.01
2065 2299 6.832901 GTGTTTAGATCGCTACGAAATAAACG 59.167 38.462 21.86 0.00 44.31 3.60
2066 2300 6.020440 TGTTTAGATCGCTACGAAATAAACGG 60.020 38.462 21.86 0.00 44.31 4.44
2067 2301 2.793232 AGATCGCTACGAAATAAACGGC 59.207 45.455 0.00 0.00 39.99 5.68
2068 2302 2.282701 TCGCTACGAAATAAACGGCT 57.717 45.000 0.00 0.00 31.06 5.52
2069 2303 2.609350 TCGCTACGAAATAAACGGCTT 58.391 42.857 0.00 0.00 31.06 4.35
2070 2304 3.768406 TCGCTACGAAATAAACGGCTTA 58.232 40.909 0.00 0.00 31.06 3.09
2071 2305 4.362279 TCGCTACGAAATAAACGGCTTAT 58.638 39.130 0.00 0.00 31.06 1.73
2072 2306 5.518812 TCGCTACGAAATAAACGGCTTATA 58.481 37.500 0.00 0.00 31.06 0.98
2073 2307 6.151691 TCGCTACGAAATAAACGGCTTATAT 58.848 36.000 0.00 0.00 31.06 0.86
2074 2308 6.642131 TCGCTACGAAATAAACGGCTTATATT 59.358 34.615 0.00 0.00 31.06 1.28
2075 2309 7.169645 TCGCTACGAAATAAACGGCTTATATTT 59.830 33.333 0.00 0.00 33.23 1.40
2076 2310 7.473411 CGCTACGAAATAAACGGCTTATATTTC 59.527 37.037 12.14 12.14 40.29 2.17
2077 2311 8.493547 GCTACGAAATAAACGGCTTATATTTCT 58.506 33.333 16.55 10.36 40.98 2.52
2086 2320 6.823678 ACGGCTTATATTTCTTTACAGACG 57.176 37.500 0.00 0.00 37.33 4.18
2087 2321 5.751990 ACGGCTTATATTTCTTTACAGACGG 59.248 40.000 0.00 0.00 35.55 4.79
2088 2322 5.981315 CGGCTTATATTTCTTTACAGACGGA 59.019 40.000 0.00 0.00 0.00 4.69
2089 2323 6.144080 CGGCTTATATTTCTTTACAGACGGAG 59.856 42.308 0.00 0.00 0.00 4.63
2108 2342 7.141100 ACGGAGTACTTTTAAAATCACATGG 57.859 36.000 0.09 0.00 41.94 3.66
2109 2343 6.938030 ACGGAGTACTTTTAAAATCACATGGA 59.062 34.615 0.09 0.00 41.94 3.41
2110 2344 7.094933 ACGGAGTACTTTTAAAATCACATGGAC 60.095 37.037 0.09 0.00 41.94 4.02
2111 2345 7.119262 CGGAGTACTTTTAAAATCACATGGACT 59.881 37.037 0.09 0.78 0.00 3.85
2112 2346 8.793592 GGAGTACTTTTAAAATCACATGGACTT 58.206 33.333 0.09 0.00 0.00 3.01
2121 2355 7.713764 AAAATCACATGGACTTTTTAACAGC 57.286 32.000 0.00 0.00 0.00 4.40
2122 2356 6.403866 AATCACATGGACTTTTTAACAGCA 57.596 33.333 0.00 0.00 0.00 4.41
2123 2357 6.594788 ATCACATGGACTTTTTAACAGCAT 57.405 33.333 0.00 0.00 0.00 3.79
2124 2358 5.771469 TCACATGGACTTTTTAACAGCATG 58.229 37.500 0.00 0.00 46.00 4.06
2125 2359 5.534278 TCACATGGACTTTTTAACAGCATGA 59.466 36.000 0.00 0.00 39.69 3.07
2126 2360 6.040278 TCACATGGACTTTTTAACAGCATGAA 59.960 34.615 0.00 0.00 39.69 2.57
2127 2361 6.869913 CACATGGACTTTTTAACAGCATGAAT 59.130 34.615 0.00 0.00 39.69 2.57
2128 2362 7.385752 CACATGGACTTTTTAACAGCATGAATT 59.614 33.333 0.00 0.00 39.69 2.17
2129 2363 7.933033 ACATGGACTTTTTAACAGCATGAATTT 59.067 29.630 0.00 0.00 39.69 1.82
2130 2364 9.421806 CATGGACTTTTTAACAGCATGAATTTA 57.578 29.630 0.00 0.00 39.69 1.40
2132 2366 9.995003 TGGACTTTTTAACAGCATGAATTTATT 57.005 25.926 0.00 0.00 39.69 1.40
2212 2446 8.664211 AAGTATATTTTTAAGCTCGAGAAGGG 57.336 34.615 18.75 0.00 0.00 3.95
2218 2452 4.760047 GCTCGAGAAGGGCGGCAA 62.760 66.667 18.75 0.00 36.12 4.52
2219 2453 2.187946 CTCGAGAAGGGCGGCAAT 59.812 61.111 12.47 0.00 0.00 3.56
2220 2454 1.884926 CTCGAGAAGGGCGGCAATC 60.885 63.158 12.47 8.31 0.00 2.67
2221 2455 2.125147 CGAGAAGGGCGGCAATCA 60.125 61.111 12.47 0.00 0.00 2.57
2222 2456 2.464459 CGAGAAGGGCGGCAATCAC 61.464 63.158 12.47 5.97 0.00 3.06
2223 2457 2.436646 AGAAGGGCGGCAATCACG 60.437 61.111 12.47 0.00 0.00 4.35
2224 2458 2.746277 GAAGGGCGGCAATCACGT 60.746 61.111 12.47 0.00 0.00 4.49
2225 2459 2.746277 AAGGGCGGCAATCACGTC 60.746 61.111 12.47 0.00 34.75 4.34
2228 2462 3.499737 GGCGGCAATCACGTCCAG 61.500 66.667 3.07 0.00 0.00 3.86
2229 2463 4.166011 GCGGCAATCACGTCCAGC 62.166 66.667 0.00 0.00 0.00 4.85
2230 2464 2.434884 CGGCAATCACGTCCAGCT 60.435 61.111 0.00 0.00 0.00 4.24
2231 2465 2.456119 CGGCAATCACGTCCAGCTC 61.456 63.158 0.00 0.00 0.00 4.09
2232 2466 2.456119 GGCAATCACGTCCAGCTCG 61.456 63.158 0.00 0.00 0.00 5.03
2233 2467 1.446099 GCAATCACGTCCAGCTCGA 60.446 57.895 0.00 0.00 0.00 4.04
2234 2468 0.807667 GCAATCACGTCCAGCTCGAT 60.808 55.000 0.00 0.00 0.00 3.59
2235 2469 0.926155 CAATCACGTCCAGCTCGATG 59.074 55.000 0.00 0.00 0.00 3.84
2236 2470 0.817654 AATCACGTCCAGCTCGATGA 59.182 50.000 7.61 0.00 0.00 2.92
2237 2471 0.383590 ATCACGTCCAGCTCGATGAG 59.616 55.000 7.61 0.00 0.00 2.90
2238 2472 0.676782 TCACGTCCAGCTCGATGAGA 60.677 55.000 7.61 1.99 0.00 3.27
2239 2473 0.383590 CACGTCCAGCTCGATGAGAT 59.616 55.000 7.61 0.00 0.00 2.75
2240 2474 1.107114 ACGTCCAGCTCGATGAGATT 58.893 50.000 7.61 0.00 0.00 2.40
2241 2475 2.033424 CACGTCCAGCTCGATGAGATTA 59.967 50.000 7.61 0.00 0.00 1.75
2242 2476 2.292016 ACGTCCAGCTCGATGAGATTAG 59.708 50.000 7.61 0.00 0.00 1.73
2243 2477 2.292016 CGTCCAGCTCGATGAGATTAGT 59.708 50.000 0.00 0.00 0.00 2.24
2244 2478 3.243234 CGTCCAGCTCGATGAGATTAGTT 60.243 47.826 0.00 0.00 0.00 2.24
2245 2479 4.688021 GTCCAGCTCGATGAGATTAGTTT 58.312 43.478 0.00 0.00 0.00 2.66
2246 2480 5.112686 GTCCAGCTCGATGAGATTAGTTTT 58.887 41.667 0.00 0.00 0.00 2.43
2247 2481 6.273825 GTCCAGCTCGATGAGATTAGTTTTA 58.726 40.000 0.00 0.00 0.00 1.52
2248 2482 6.757010 GTCCAGCTCGATGAGATTAGTTTTAA 59.243 38.462 0.00 0.00 0.00 1.52
2249 2483 7.277981 GTCCAGCTCGATGAGATTAGTTTTAAA 59.722 37.037 0.00 0.00 0.00 1.52
2250 2484 7.822334 TCCAGCTCGATGAGATTAGTTTTAAAA 59.178 33.333 0.00 0.00 0.00 1.52
2251 2485 7.905493 CCAGCTCGATGAGATTAGTTTTAAAAC 59.095 37.037 21.06 21.06 39.17 2.43
2253 2487 9.871238 AGCTCGATGAGATTAGTTTTAAAACTA 57.129 29.630 28.77 28.77 46.75 2.24
2270 2504 9.820229 TTTAAAACTATTAGACATTCACTTGCG 57.180 29.630 0.00 0.00 0.00 4.85
2271 2505 7.667043 AAAACTATTAGACATTCACTTGCGA 57.333 32.000 0.00 0.00 0.00 5.10
2272 2506 7.849804 AAACTATTAGACATTCACTTGCGAT 57.150 32.000 0.00 0.00 0.00 4.58
2273 2507 6.834959 ACTATTAGACATTCACTTGCGATG 57.165 37.500 0.00 0.00 0.00 3.84
2274 2508 6.573434 ACTATTAGACATTCACTTGCGATGA 58.427 36.000 0.00 0.00 0.00 2.92
2275 2509 7.212976 ACTATTAGACATTCACTTGCGATGAT 58.787 34.615 0.00 0.00 0.00 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.064003 ACCATGGTGTTAGCTGGACA 58.936 50.000 18.99 0.00 32.92 4.02
79 80 2.513204 CCGCCATGTCCAGCTCAG 60.513 66.667 0.00 0.00 0.00 3.35
80 81 3.002583 TCCGCCATGTCCAGCTCA 61.003 61.111 0.00 0.00 0.00 4.26
81 82 2.512515 GTCCGCCATGTCCAGCTC 60.513 66.667 0.00 0.00 0.00 4.09
82 83 4.457496 CGTCCGCCATGTCCAGCT 62.457 66.667 0.00 0.00 0.00 4.24
260 266 1.481428 GCCCCTCATCTAGAGCCTGTA 60.481 57.143 0.00 0.00 43.31 2.74
590 596 5.263948 GTTCCTTCTCAGAAAAACGTTGAC 58.736 41.667 0.00 0.00 0.00 3.18
709 715 3.329520 AGAGCTAGATCCTCACGTATCCT 59.670 47.826 3.92 0.00 0.00 3.24
754 760 3.196254 CCAAAACCTGGCAGCATAGAAAT 59.804 43.478 9.56 0.00 38.76 2.17
782 788 1.913262 TATCCATCATCGGGCGGCT 60.913 57.895 9.56 0.00 0.00 5.52
906 912 2.687200 TCTGTCACCCCCGGGATG 60.687 66.667 26.32 20.44 38.96 3.51
941 947 1.686052 CTCCTTCCTTGAGCGCTAGAT 59.314 52.381 11.50 0.00 0.00 1.98
1010 1016 1.807142 GGTTTACTGCCTCAAGACAGC 59.193 52.381 0.00 0.00 37.42 4.40
1195 1201 4.223255 GGGAGTAGAGTCTAACCAGCTTTT 59.777 45.833 19.67 0.00 0.00 2.27
1197 1203 3.367321 GGGAGTAGAGTCTAACCAGCTT 58.633 50.000 19.67 0.00 0.00 3.74
1313 1547 2.104572 TATCCCTGCTGAGGCGCATC 62.105 60.000 16.46 16.46 42.25 3.91
1314 1548 1.699054 TTATCCCTGCTGAGGCGCAT 61.699 55.000 10.83 0.00 42.25 4.73
1315 1549 2.315781 CTTATCCCTGCTGAGGCGCA 62.316 60.000 10.83 0.00 42.25 6.09
1316 1550 1.596477 CTTATCCCTGCTGAGGCGC 60.596 63.158 0.00 0.00 42.25 6.53
1317 1551 1.596477 GCTTATCCCTGCTGAGGCG 60.596 63.158 0.00 0.00 42.25 5.52
1318 1552 1.596477 CGCTTATCCCTGCTGAGGC 60.596 63.158 0.00 0.00 38.17 4.70
1319 1553 1.070445 CCGCTTATCCCTGCTGAGG 59.930 63.158 0.00 0.00 39.42 3.86
1320 1554 1.000283 CTACCGCTTATCCCTGCTGAG 60.000 57.143 0.00 0.00 0.00 3.35
1321 1555 1.040646 CTACCGCTTATCCCTGCTGA 58.959 55.000 0.00 0.00 0.00 4.26
1322 1556 1.000283 CTCTACCGCTTATCCCTGCTG 60.000 57.143 0.00 0.00 0.00 4.41
1323 1557 1.333177 CTCTACCGCTTATCCCTGCT 58.667 55.000 0.00 0.00 0.00 4.24
1324 1558 1.000052 GACTCTACCGCTTATCCCTGC 60.000 57.143 0.00 0.00 0.00 4.85
1325 1559 1.267261 CGACTCTACCGCTTATCCCTG 59.733 57.143 0.00 0.00 0.00 4.45
1326 1560 1.606903 CGACTCTACCGCTTATCCCT 58.393 55.000 0.00 0.00 0.00 4.20
1327 1561 0.597072 CCGACTCTACCGCTTATCCC 59.403 60.000 0.00 0.00 0.00 3.85
1328 1562 0.597072 CCCGACTCTACCGCTTATCC 59.403 60.000 0.00 0.00 0.00 2.59
1329 1563 0.039346 GCCCGACTCTACCGCTTATC 60.039 60.000 0.00 0.00 0.00 1.75
1330 1564 1.793134 CGCCCGACTCTACCGCTTAT 61.793 60.000 0.00 0.00 0.00 1.73
1331 1565 2.475466 CGCCCGACTCTACCGCTTA 61.475 63.158 0.00 0.00 0.00 3.09
1332 1566 3.823330 CGCCCGACTCTACCGCTT 61.823 66.667 0.00 0.00 0.00 4.68
1333 1567 4.790962 TCGCCCGACTCTACCGCT 62.791 66.667 0.00 0.00 0.00 5.52
1334 1568 4.549516 GTCGCCCGACTCTACCGC 62.550 72.222 13.10 0.00 41.57 5.68
1335 1569 3.885521 GGTCGCCCGACTCTACCG 61.886 72.222 18.78 0.00 44.04 4.02
1336 1570 0.749454 TAAGGTCGCCCGACTCTACC 60.749 60.000 18.78 4.32 44.04 3.18
1337 1571 0.662085 CTAAGGTCGCCCGACTCTAC 59.338 60.000 18.78 4.10 44.04 2.59
1338 1572 1.099879 GCTAAGGTCGCCCGACTCTA 61.100 60.000 18.78 10.32 44.04 2.43
1339 1573 2.416432 GCTAAGGTCGCCCGACTCT 61.416 63.158 18.78 11.99 44.04 3.24
1340 1574 2.104530 GCTAAGGTCGCCCGACTC 59.895 66.667 18.78 10.14 44.04 3.36
1341 1575 3.823330 CGCTAAGGTCGCCCGACT 61.823 66.667 18.78 4.55 44.04 4.18
1342 1576 4.867599 CCGCTAAGGTCGCCCGAC 62.868 72.222 12.07 12.07 43.87 4.79
1349 1583 3.486252 ATCTCGCGCCGCTAAGGTC 62.486 63.158 7.78 0.00 43.70 3.85
1350 1584 3.528370 ATCTCGCGCCGCTAAGGT 61.528 61.111 7.78 0.00 43.70 3.50
1351 1585 3.032609 CATCTCGCGCCGCTAAGG 61.033 66.667 7.78 0.00 44.97 2.69
1352 1586 2.278857 ACATCTCGCGCCGCTAAG 60.279 61.111 7.78 4.63 0.00 2.18
1353 1587 2.278596 GACATCTCGCGCCGCTAA 60.279 61.111 7.78 0.00 0.00 3.09
1354 1588 4.607606 CGACATCTCGCGCCGCTA 62.608 66.667 7.78 0.00 31.91 4.26
1357 1591 3.607987 GTTCGACATCTCGCGCCG 61.608 66.667 0.00 0.00 39.96 6.46
1358 1592 3.607987 CGTTCGACATCTCGCGCC 61.608 66.667 0.00 0.00 39.96 6.53
1359 1593 4.253273 GCGTTCGACATCTCGCGC 62.253 66.667 0.00 0.00 41.77 6.86
1362 1596 2.508891 GCCAGCGTTCGACATCTCG 61.509 63.158 0.00 0.00 41.65 4.04
1363 1597 2.508891 CGCCAGCGTTCGACATCTC 61.509 63.158 3.35 0.00 34.35 2.75
1364 1598 2.507102 CGCCAGCGTTCGACATCT 60.507 61.111 3.35 0.00 34.35 2.90
1365 1599 3.554692 CCGCCAGCGTTCGACATC 61.555 66.667 11.55 0.00 37.81 3.06
1366 1600 3.876589 AACCGCCAGCGTTCGACAT 62.877 57.895 11.55 0.00 37.81 3.06
1367 1601 4.595538 AACCGCCAGCGTTCGACA 62.596 61.111 11.55 0.00 37.81 4.35
1368 1602 4.072088 CAACCGCCAGCGTTCGAC 62.072 66.667 11.55 0.00 37.81 4.20
1369 1603 4.595538 ACAACCGCCAGCGTTCGA 62.596 61.111 11.55 0.00 37.81 3.71
1370 1604 4.072088 GACAACCGCCAGCGTTCG 62.072 66.667 11.55 0.96 37.81 3.95
1371 1605 4.072088 CGACAACCGCCAGCGTTC 62.072 66.667 11.55 1.22 37.81 3.95
1372 1606 3.876589 ATCGACAACCGCCAGCGTT 62.877 57.895 11.55 2.88 38.37 4.84
1373 1607 4.373116 ATCGACAACCGCCAGCGT 62.373 61.111 11.55 0.00 38.37 5.07
1374 1608 3.853330 CATCGACAACCGCCAGCG 61.853 66.667 4.75 4.75 38.37 5.18
1375 1609 3.499737 CCATCGACAACCGCCAGC 61.500 66.667 0.00 0.00 38.37 4.85
1376 1610 2.100631 GTCCATCGACAACCGCCAG 61.101 63.158 0.00 0.00 38.99 4.85
1377 1611 2.047655 GTCCATCGACAACCGCCA 60.048 61.111 0.00 0.00 38.99 5.69
1378 1612 2.818274 GGTCCATCGACAACCGCC 60.818 66.667 0.00 0.00 41.13 6.13
1379 1613 2.818274 GGGTCCATCGACAACCGC 60.818 66.667 6.61 0.00 41.13 5.68
1380 1614 2.125269 GGGGTCCATCGACAACCG 60.125 66.667 6.61 0.00 41.13 4.44
1381 1615 2.253403 GAGGGGGTCCATCGACAACC 62.253 65.000 4.50 4.50 41.13 3.77
1382 1616 1.221021 GAGGGGGTCCATCGACAAC 59.779 63.158 0.00 0.00 41.13 3.32
1383 1617 1.993391 GGAGGGGGTCCATCGACAA 60.993 63.158 0.00 0.00 46.10 3.18
1384 1618 2.365105 GGAGGGGGTCCATCGACA 60.365 66.667 0.00 0.00 46.10 4.35
1391 1625 0.340908 TAAGTACAGGGAGGGGGTCC 59.659 60.000 0.00 0.00 46.10 4.46
1392 1626 2.117051 CTTAAGTACAGGGAGGGGGTC 58.883 57.143 0.00 0.00 0.00 4.46
1393 1627 1.274242 CCTTAAGTACAGGGAGGGGGT 60.274 57.143 0.97 0.00 0.00 4.95
1394 1628 1.009183 TCCTTAAGTACAGGGAGGGGG 59.991 57.143 0.97 0.00 31.50 5.40
1395 1629 2.563039 TCCTTAAGTACAGGGAGGGG 57.437 55.000 0.97 0.00 31.50 4.79
1396 1630 6.386050 TCTTAAATCCTTAAGTACAGGGAGGG 59.614 42.308 0.97 0.00 43.12 4.30
1397 1631 7.433537 TCTTAAATCCTTAAGTACAGGGAGG 57.566 40.000 0.97 0.00 43.12 4.30
1398 1632 9.907229 AAATCTTAAATCCTTAAGTACAGGGAG 57.093 33.333 0.97 0.00 43.12 4.30
1399 1633 9.681062 CAAATCTTAAATCCTTAAGTACAGGGA 57.319 33.333 0.97 0.00 43.12 4.20
1400 1634 9.681062 TCAAATCTTAAATCCTTAAGTACAGGG 57.319 33.333 0.97 0.00 43.12 4.45
1410 1644 9.807649 CCGATCAAAATCAAATCTTAAATCCTT 57.192 29.630 0.00 0.00 31.76 3.36
1411 1645 7.922811 GCCGATCAAAATCAAATCTTAAATCCT 59.077 33.333 0.00 0.00 31.76 3.24
1412 1646 7.169813 GGCCGATCAAAATCAAATCTTAAATCC 59.830 37.037 0.00 0.00 31.76 3.01
1413 1647 7.706179 TGGCCGATCAAAATCAAATCTTAAATC 59.294 33.333 0.00 0.00 31.76 2.17
1414 1648 7.555087 TGGCCGATCAAAATCAAATCTTAAAT 58.445 30.769 0.00 0.00 31.76 1.40
1415 1649 6.929625 TGGCCGATCAAAATCAAATCTTAAA 58.070 32.000 0.00 0.00 31.76 1.52
1416 1650 6.522625 TGGCCGATCAAAATCAAATCTTAA 57.477 33.333 0.00 0.00 31.76 1.85
1417 1651 6.522625 TTGGCCGATCAAAATCAAATCTTA 57.477 33.333 0.00 0.00 31.76 2.10
1418 1652 5.404466 TTGGCCGATCAAAATCAAATCTT 57.596 34.783 0.00 0.00 31.76 2.40
1419 1653 5.404466 TTTGGCCGATCAAAATCAAATCT 57.596 34.783 0.00 0.00 34.17 2.40
1420 1654 4.567959 CCTTTGGCCGATCAAAATCAAATC 59.432 41.667 0.00 0.00 36.37 2.17
1421 1655 4.020307 ACCTTTGGCCGATCAAAATCAAAT 60.020 37.500 0.00 0.00 36.37 2.32
1422 1656 3.323403 ACCTTTGGCCGATCAAAATCAAA 59.677 39.130 0.00 0.00 36.37 2.69
1423 1657 2.896685 ACCTTTGGCCGATCAAAATCAA 59.103 40.909 0.00 0.00 36.37 2.57
1424 1658 2.524306 ACCTTTGGCCGATCAAAATCA 58.476 42.857 0.00 0.00 36.37 2.57
1425 1659 3.592898 AACCTTTGGCCGATCAAAATC 57.407 42.857 0.00 0.00 36.37 2.17
1426 1660 3.663025 CAAACCTTTGGCCGATCAAAAT 58.337 40.909 0.00 0.00 36.37 1.82
1427 1661 3.104843 CAAACCTTTGGCCGATCAAAA 57.895 42.857 0.00 0.00 36.37 2.44
1428 1662 2.810439 CAAACCTTTGGCCGATCAAA 57.190 45.000 0.00 0.00 34.59 2.69
1438 1672 2.926838 CGAACCAACAACCAAACCTTTG 59.073 45.455 0.00 0.00 37.90 2.77
1439 1673 2.675603 GCGAACCAACAACCAAACCTTT 60.676 45.455 0.00 0.00 0.00 3.11
1440 1674 1.134936 GCGAACCAACAACCAAACCTT 60.135 47.619 0.00 0.00 0.00 3.50
1441 1675 0.458260 GCGAACCAACAACCAAACCT 59.542 50.000 0.00 0.00 0.00 3.50
1442 1676 0.458260 AGCGAACCAACAACCAAACC 59.542 50.000 0.00 0.00 0.00 3.27
1443 1677 2.190161 GAAGCGAACCAACAACCAAAC 58.810 47.619 0.00 0.00 0.00 2.93
1444 1678 1.202200 CGAAGCGAACCAACAACCAAA 60.202 47.619 0.00 0.00 0.00 3.28
1445 1679 0.378962 CGAAGCGAACCAACAACCAA 59.621 50.000 0.00 0.00 0.00 3.67
1446 1680 0.745128 ACGAAGCGAACCAACAACCA 60.745 50.000 0.00 0.00 0.00 3.67
1447 1681 0.316689 CACGAAGCGAACCAACAACC 60.317 55.000 0.00 0.00 0.00 3.77
1448 1682 0.375803 ACACGAAGCGAACCAACAAC 59.624 50.000 0.00 0.00 0.00 3.32
1449 1683 1.862201 CTACACGAAGCGAACCAACAA 59.138 47.619 0.00 0.00 0.00 2.83
1450 1684 1.202440 ACTACACGAAGCGAACCAACA 60.202 47.619 0.00 0.00 0.00 3.33
1451 1685 1.191647 CACTACACGAAGCGAACCAAC 59.808 52.381 0.00 0.00 0.00 3.77
1452 1686 1.493772 CACTACACGAAGCGAACCAA 58.506 50.000 0.00 0.00 0.00 3.67
1453 1687 0.942410 GCACTACACGAAGCGAACCA 60.942 55.000 0.00 0.00 0.00 3.67
1454 1688 0.666577 AGCACTACACGAAGCGAACC 60.667 55.000 0.00 0.00 0.00 3.62
1455 1689 0.435008 CAGCACTACACGAAGCGAAC 59.565 55.000 0.00 0.00 0.00 3.95
1456 1690 0.312729 TCAGCACTACACGAAGCGAA 59.687 50.000 0.00 0.00 0.00 4.70
1457 1691 0.526211 ATCAGCACTACACGAAGCGA 59.474 50.000 0.00 0.00 0.00 4.93
1458 1692 0.917259 GATCAGCACTACACGAAGCG 59.083 55.000 0.00 0.00 0.00 4.68
1459 1693 1.281899 GGATCAGCACTACACGAAGC 58.718 55.000 0.00 0.00 0.00 3.86
1460 1694 2.263077 GTGGATCAGCACTACACGAAG 58.737 52.381 0.00 0.00 0.00 3.79
1461 1695 2.363788 GTGGATCAGCACTACACGAA 57.636 50.000 0.00 0.00 0.00 3.85
1463 1697 2.653742 CGTGGATCAGCACTACACG 58.346 57.895 0.00 0.00 46.82 4.49
1464 1698 1.350193 CACGTGGATCAGCACTACAC 58.650 55.000 7.95 0.00 0.00 2.90
1465 1699 0.246360 CCACGTGGATCAGCACTACA 59.754 55.000 31.31 0.00 37.39 2.74
1466 1700 0.246635 ACCACGTGGATCAGCACTAC 59.753 55.000 40.21 0.00 38.94 2.73
1467 1701 0.530744 GACCACGTGGATCAGCACTA 59.469 55.000 40.21 0.00 38.94 2.74
1468 1702 1.293498 GACCACGTGGATCAGCACT 59.707 57.895 40.21 16.10 38.94 4.40
1469 1703 1.741770 GGACCACGTGGATCAGCAC 60.742 63.158 40.21 19.35 38.94 4.40
1470 1704 1.480212 AAGGACCACGTGGATCAGCA 61.480 55.000 40.21 0.00 38.94 4.41
1471 1705 0.321653 AAAGGACCACGTGGATCAGC 60.322 55.000 40.21 21.36 38.94 4.26
1472 1706 2.185004 AAAAGGACCACGTGGATCAG 57.815 50.000 40.21 14.52 38.94 2.90
1473 1707 2.649531 AAAAAGGACCACGTGGATCA 57.350 45.000 40.21 0.00 38.94 2.92
1499 1733 0.321671 ATTACACGTGGAGCAGTGCT 59.678 50.000 19.86 19.86 43.88 4.40
1500 1734 0.721718 GATTACACGTGGAGCAGTGC 59.278 55.000 21.57 7.13 41.72 4.40
1501 1735 1.995484 CAGATTACACGTGGAGCAGTG 59.005 52.381 21.57 6.11 43.46 3.66
1502 1736 1.066858 CCAGATTACACGTGGAGCAGT 60.067 52.381 21.57 0.00 32.60 4.40
1503 1737 1.645034 CCAGATTACACGTGGAGCAG 58.355 55.000 21.57 7.63 32.60 4.24
1504 1738 0.249120 CCCAGATTACACGTGGAGCA 59.751 55.000 21.57 0.00 32.60 4.26
1505 1739 0.535335 TCCCAGATTACACGTGGAGC 59.465 55.000 21.57 10.88 32.60 4.70
1506 1740 2.430694 TCATCCCAGATTACACGTGGAG 59.569 50.000 21.57 0.00 32.60 3.86
1507 1741 2.430694 CTCATCCCAGATTACACGTGGA 59.569 50.000 21.57 9.00 32.60 4.02
1508 1742 2.430694 TCTCATCCCAGATTACACGTGG 59.569 50.000 21.57 0.00 0.00 4.94
1509 1743 3.801114 TCTCATCCCAGATTACACGTG 57.199 47.619 15.48 15.48 0.00 4.49
1510 1744 4.819105 TTTCTCATCCCAGATTACACGT 57.181 40.909 0.00 0.00 0.00 4.49
1511 1745 6.489675 CAATTTTCTCATCCCAGATTACACG 58.510 40.000 0.00 0.00 0.00 4.49
1512 1746 6.127647 TGCAATTTTCTCATCCCAGATTACAC 60.128 38.462 0.00 0.00 0.00 2.90
1513 1747 5.951148 TGCAATTTTCTCATCCCAGATTACA 59.049 36.000 0.00 0.00 0.00 2.41
1514 1748 6.127647 TGTGCAATTTTCTCATCCCAGATTAC 60.128 38.462 0.00 0.00 0.00 1.89
1515 1749 5.951148 TGTGCAATTTTCTCATCCCAGATTA 59.049 36.000 0.00 0.00 0.00 1.75
1516 1750 4.773674 TGTGCAATTTTCTCATCCCAGATT 59.226 37.500 0.00 0.00 0.00 2.40
1517 1751 4.346730 TGTGCAATTTTCTCATCCCAGAT 58.653 39.130 0.00 0.00 0.00 2.90
1518 1752 3.760151 CTGTGCAATTTTCTCATCCCAGA 59.240 43.478 0.00 0.00 0.00 3.86
1519 1753 3.119245 CCTGTGCAATTTTCTCATCCCAG 60.119 47.826 0.00 0.00 0.00 4.45
1520 1754 2.827322 CCTGTGCAATTTTCTCATCCCA 59.173 45.455 0.00 0.00 0.00 4.37
1521 1755 2.417787 GCCTGTGCAATTTTCTCATCCC 60.418 50.000 0.00 0.00 37.47 3.85
1522 1756 2.494870 AGCCTGTGCAATTTTCTCATCC 59.505 45.455 0.00 0.00 41.13 3.51
1523 1757 3.863142 AGCCTGTGCAATTTTCTCATC 57.137 42.857 0.00 0.00 41.13 2.92
1524 1758 4.159135 CCTAAGCCTGTGCAATTTTCTCAT 59.841 41.667 0.00 0.00 41.13 2.90
1525 1759 3.507233 CCTAAGCCTGTGCAATTTTCTCA 59.493 43.478 0.00 0.00 41.13 3.27
1526 1760 3.119352 CCCTAAGCCTGTGCAATTTTCTC 60.119 47.826 0.00 0.00 41.13 2.87
1527 1761 2.827921 CCCTAAGCCTGTGCAATTTTCT 59.172 45.455 0.00 0.00 41.13 2.52
1528 1762 2.675032 GCCCTAAGCCTGTGCAATTTTC 60.675 50.000 0.00 0.00 41.13 2.29
1529 1763 1.276138 GCCCTAAGCCTGTGCAATTTT 59.724 47.619 0.00 0.00 41.13 1.82
1530 1764 0.897621 GCCCTAAGCCTGTGCAATTT 59.102 50.000 0.00 0.00 41.13 1.82
1531 1765 0.251742 TGCCCTAAGCCTGTGCAATT 60.252 50.000 0.00 0.00 42.71 2.32
1532 1766 0.967380 GTGCCCTAAGCCTGTGCAAT 60.967 55.000 0.00 0.00 42.71 3.56
1533 1767 1.603455 GTGCCCTAAGCCTGTGCAA 60.603 57.895 0.00 0.00 42.71 4.08
1534 1768 2.034066 GTGCCCTAAGCCTGTGCA 59.966 61.111 0.00 0.00 42.71 4.57
1535 1769 1.603455 TTGTGCCCTAAGCCTGTGC 60.603 57.895 0.00 0.00 42.71 4.57
1536 1770 0.537143 TGTTGTGCCCTAAGCCTGTG 60.537 55.000 0.00 0.00 42.71 3.66
1537 1771 0.184933 TTGTTGTGCCCTAAGCCTGT 59.815 50.000 0.00 0.00 42.71 4.00
1538 1772 0.883833 CTTGTTGTGCCCTAAGCCTG 59.116 55.000 0.00 0.00 42.71 4.85
1539 1773 0.251341 CCTTGTTGTGCCCTAAGCCT 60.251 55.000 0.00 0.00 42.71 4.58
1540 1774 1.250840 CCCTTGTTGTGCCCTAAGCC 61.251 60.000 0.00 0.00 42.71 4.35
1541 1775 0.539669 ACCCTTGTTGTGCCCTAAGC 60.540 55.000 0.00 0.00 44.14 3.09
1542 1776 2.871096 TACCCTTGTTGTGCCCTAAG 57.129 50.000 0.00 0.00 0.00 2.18
1543 1777 3.596940 TTTACCCTTGTTGTGCCCTAA 57.403 42.857 0.00 0.00 0.00 2.69
1544 1778 3.596940 TTTTACCCTTGTTGTGCCCTA 57.403 42.857 0.00 0.00 0.00 3.53
1545 1779 2.463047 TTTTACCCTTGTTGTGCCCT 57.537 45.000 0.00 0.00 0.00 5.19
1546 1780 2.897326 AGATTTTACCCTTGTTGTGCCC 59.103 45.455 0.00 0.00 0.00 5.36
1547 1781 4.600692 AAGATTTTACCCTTGTTGTGCC 57.399 40.909 0.00 0.00 0.00 5.01
1548 1782 7.430441 TCTAAAAGATTTTACCCTTGTTGTGC 58.570 34.615 0.00 0.00 0.00 4.57
1549 1783 9.981114 ATTCTAAAAGATTTTACCCTTGTTGTG 57.019 29.630 0.00 0.00 0.00 3.33
1553 1787 8.967918 GGCTATTCTAAAAGATTTTACCCTTGT 58.032 33.333 0.00 0.00 0.00 3.16
1554 1788 8.414003 GGGCTATTCTAAAAGATTTTACCCTTG 58.586 37.037 10.01 0.00 32.73 3.61
1555 1789 8.344546 AGGGCTATTCTAAAAGATTTTACCCTT 58.655 33.333 12.53 2.89 38.00 3.95
1556 1790 7.883823 AGGGCTATTCTAAAAGATTTTACCCT 58.116 34.615 12.53 12.53 37.15 4.34
1557 1791 7.230913 GGAGGGCTATTCTAAAAGATTTTACCC 59.769 40.741 9.54 9.54 34.31 3.69
1558 1792 7.999545 AGGAGGGCTATTCTAAAAGATTTTACC 59.000 37.037 0.00 0.00 0.00 2.85
1559 1793 8.982091 AGGAGGGCTATTCTAAAAGATTTTAC 57.018 34.615 0.00 0.00 0.00 2.01
1560 1794 8.218488 GGAGGAGGGCTATTCTAAAAGATTTTA 58.782 37.037 0.00 0.00 0.00 1.52
1561 1795 7.063593 GGAGGAGGGCTATTCTAAAAGATTTT 58.936 38.462 0.00 0.00 0.00 1.82
1562 1796 6.391352 AGGAGGAGGGCTATTCTAAAAGATTT 59.609 38.462 0.00 0.00 0.00 2.17
1563 1797 5.914124 AGGAGGAGGGCTATTCTAAAAGATT 59.086 40.000 0.00 0.00 0.00 2.40
1564 1798 5.309282 CAGGAGGAGGGCTATTCTAAAAGAT 59.691 44.000 0.00 0.00 0.00 2.40
1565 1799 4.656112 CAGGAGGAGGGCTATTCTAAAAGA 59.344 45.833 0.00 0.00 0.00 2.52
1566 1800 4.202409 CCAGGAGGAGGGCTATTCTAAAAG 60.202 50.000 0.00 0.00 36.89 2.27
1567 1801 3.716872 CCAGGAGGAGGGCTATTCTAAAA 59.283 47.826 0.00 0.00 36.89 1.52
1568 1802 3.311402 ACCAGGAGGAGGGCTATTCTAAA 60.311 47.826 0.00 0.00 38.69 1.85
1569 1803 2.250273 ACCAGGAGGAGGGCTATTCTAA 59.750 50.000 0.00 0.00 38.69 2.10
1570 1804 1.866943 ACCAGGAGGAGGGCTATTCTA 59.133 52.381 0.00 0.00 38.69 2.10
1571 1805 0.644937 ACCAGGAGGAGGGCTATTCT 59.355 55.000 0.00 0.00 38.69 2.40
1572 1806 1.418264 GAACCAGGAGGAGGGCTATTC 59.582 57.143 0.00 0.00 38.69 1.75
1573 1807 1.274416 TGAACCAGGAGGAGGGCTATT 60.274 52.381 0.00 0.00 38.69 1.73
1574 1808 0.343372 TGAACCAGGAGGAGGGCTAT 59.657 55.000 0.00 0.00 38.69 2.97
1575 1809 0.617820 GTGAACCAGGAGGAGGGCTA 60.618 60.000 0.00 0.00 38.69 3.93
1576 1810 1.920835 GTGAACCAGGAGGAGGGCT 60.921 63.158 0.00 0.00 38.69 5.19
1577 1811 0.617820 TAGTGAACCAGGAGGAGGGC 60.618 60.000 0.00 0.00 38.69 5.19
1578 1812 2.182516 ATAGTGAACCAGGAGGAGGG 57.817 55.000 0.00 0.00 38.69 4.30
1702 1936 9.293404 ACATGTACGGACGCCTATTATATATAT 57.707 33.333 0.00 0.00 0.00 0.86
1703 1937 8.681486 ACATGTACGGACGCCTATTATATATA 57.319 34.615 0.00 0.00 0.00 0.86
1704 1938 7.578310 ACATGTACGGACGCCTATTATATAT 57.422 36.000 0.00 0.00 0.00 0.86
1705 1939 8.504812 TTACATGTACGGACGCCTATTATATA 57.495 34.615 4.68 0.00 0.00 0.86
1706 1940 5.909621 ACATGTACGGACGCCTATTATAT 57.090 39.130 0.00 0.00 0.00 0.86
1707 1941 6.816134 TTACATGTACGGACGCCTATTATA 57.184 37.500 4.68 0.00 0.00 0.98
1708 1942 5.710513 TTACATGTACGGACGCCTATTAT 57.289 39.130 4.68 0.00 0.00 1.28
1709 1943 5.474532 AGATTACATGTACGGACGCCTATTA 59.525 40.000 4.68 0.00 0.00 0.98
1710 1944 4.280174 AGATTACATGTACGGACGCCTATT 59.720 41.667 4.68 0.00 0.00 1.73
1711 1945 3.825014 AGATTACATGTACGGACGCCTAT 59.175 43.478 4.68 0.00 0.00 2.57
1712 1946 3.004002 CAGATTACATGTACGGACGCCTA 59.996 47.826 4.68 0.00 0.00 3.93
1713 1947 2.029623 AGATTACATGTACGGACGCCT 58.970 47.619 4.68 0.00 0.00 5.52
1714 1948 2.124903 CAGATTACATGTACGGACGCC 58.875 52.381 4.68 0.00 0.00 5.68
1715 1949 3.074504 TCAGATTACATGTACGGACGC 57.925 47.619 4.68 0.00 0.00 5.19
1716 1950 4.675565 GTGATCAGATTACATGTACGGACG 59.324 45.833 4.68 0.00 0.00 4.79
1717 1951 5.833082 AGTGATCAGATTACATGTACGGAC 58.167 41.667 4.68 0.00 0.00 4.79
1718 1952 6.465439 AAGTGATCAGATTACATGTACGGA 57.535 37.500 4.68 1.95 0.00 4.69
1719 1953 6.641314 GGTAAGTGATCAGATTACATGTACGG 59.359 42.308 22.80 0.00 32.27 4.02
1720 1954 7.167635 GTGGTAAGTGATCAGATTACATGTACG 59.832 40.741 22.80 0.00 32.27 3.67
1721 1955 7.979537 TGTGGTAAGTGATCAGATTACATGTAC 59.020 37.037 22.80 17.43 32.27 2.90
1722 1956 7.979537 GTGTGGTAAGTGATCAGATTACATGTA 59.020 37.037 22.80 0.08 32.27 2.29
1723 1957 6.818644 GTGTGGTAAGTGATCAGATTACATGT 59.181 38.462 22.80 2.69 32.27 3.21
1724 1958 6.818142 TGTGTGGTAAGTGATCAGATTACATG 59.182 38.462 22.80 0.00 32.27 3.21
1725 1959 6.818644 GTGTGTGGTAAGTGATCAGATTACAT 59.181 38.462 22.80 0.00 32.27 2.29
1726 1960 6.163476 GTGTGTGGTAAGTGATCAGATTACA 58.837 40.000 22.80 11.18 32.27 2.41
1727 1961 5.581085 GGTGTGTGGTAAGTGATCAGATTAC 59.419 44.000 17.04 17.04 0.00 1.89
1728 1962 5.247337 TGGTGTGTGGTAAGTGATCAGATTA 59.753 40.000 0.00 0.00 0.00 1.75
1729 1963 4.041567 TGGTGTGTGGTAAGTGATCAGATT 59.958 41.667 0.00 0.00 0.00 2.40
1730 1964 3.582647 TGGTGTGTGGTAAGTGATCAGAT 59.417 43.478 0.00 0.00 0.00 2.90
1731 1965 2.969262 TGGTGTGTGGTAAGTGATCAGA 59.031 45.455 0.00 0.00 0.00 3.27
1732 1966 3.401033 TGGTGTGTGGTAAGTGATCAG 57.599 47.619 0.00 0.00 0.00 2.90
1733 1967 3.847671 TTGGTGTGTGGTAAGTGATCA 57.152 42.857 0.00 0.00 0.00 2.92
1734 1968 5.508200 TTTTTGGTGTGTGGTAAGTGATC 57.492 39.130 0.00 0.00 0.00 2.92
1735 1969 6.478512 AATTTTTGGTGTGTGGTAAGTGAT 57.521 33.333 0.00 0.00 0.00 3.06
1736 1970 5.923733 AATTTTTGGTGTGTGGTAAGTGA 57.076 34.783 0.00 0.00 0.00 3.41
1737 1971 8.655651 ATTAAATTTTTGGTGTGTGGTAAGTG 57.344 30.769 0.00 0.00 0.00 3.16
1738 1972 9.674068 AAATTAAATTTTTGGTGTGTGGTAAGT 57.326 25.926 0.00 0.00 0.00 2.24
1742 1976 8.563732 GCATAAATTAAATTTTTGGTGTGTGGT 58.436 29.630 0.00 0.00 33.58 4.16
1743 1977 8.562892 TGCATAAATTAAATTTTTGGTGTGTGG 58.437 29.630 0.00 0.00 33.58 4.17
1759 1993 8.877779 GGCACAAACACATAAATGCATAAATTA 58.122 29.630 0.00 0.00 34.73 1.40
1760 1994 7.607223 AGGCACAAACACATAAATGCATAAATT 59.393 29.630 0.00 0.00 34.73 1.82
1761 1995 7.104939 AGGCACAAACACATAAATGCATAAAT 58.895 30.769 0.00 0.00 34.73 1.40
1762 1996 6.462500 AGGCACAAACACATAAATGCATAAA 58.538 32.000 0.00 0.00 34.73 1.40
1763 1997 6.035368 AGGCACAAACACATAAATGCATAA 57.965 33.333 0.00 0.00 34.73 1.90
1764 1998 5.657826 AGGCACAAACACATAAATGCATA 57.342 34.783 0.00 0.00 34.73 3.14
1765 1999 4.540359 AGGCACAAACACATAAATGCAT 57.460 36.364 0.00 0.00 34.73 3.96
1766 2000 4.333913 AAGGCACAAACACATAAATGCA 57.666 36.364 0.00 0.00 34.73 3.96
1767 2001 5.671742 AAAAGGCACAAACACATAAATGC 57.328 34.783 0.00 0.00 0.00 3.56
1768 2002 7.706281 TGTAAAAGGCACAAACACATAAATG 57.294 32.000 0.00 0.00 0.00 2.32
1769 2003 8.723942 TTTGTAAAAGGCACAAACACATAAAT 57.276 26.923 0.00 0.00 40.12 1.40
1770 2004 8.607459 CATTTGTAAAAGGCACAAACACATAAA 58.393 29.630 3.34 0.00 45.74 1.40
1771 2005 7.766278 ACATTTGTAAAAGGCACAAACACATAA 59.234 29.630 3.34 0.00 45.74 1.90
1772 2006 7.268586 ACATTTGTAAAAGGCACAAACACATA 58.731 30.769 3.34 0.00 45.74 2.29
1773 2007 6.112058 ACATTTGTAAAAGGCACAAACACAT 58.888 32.000 3.34 0.00 45.74 3.21
1774 2008 5.482908 ACATTTGTAAAAGGCACAAACACA 58.517 33.333 3.34 0.00 45.74 3.72
1775 2009 5.578727 TGACATTTGTAAAAGGCACAAACAC 59.421 36.000 3.34 0.64 45.74 3.32
1776 2010 5.724328 TGACATTTGTAAAAGGCACAAACA 58.276 33.333 3.34 0.00 45.74 2.83
1777 2011 6.257630 ACATGACATTTGTAAAAGGCACAAAC 59.742 34.615 0.00 0.00 45.74 2.93
1778 2012 6.344500 ACATGACATTTGTAAAAGGCACAAA 58.656 32.000 0.00 3.71 46.64 2.83
1779 2013 5.911752 ACATGACATTTGTAAAAGGCACAA 58.088 33.333 0.00 0.00 34.18 3.33
1780 2014 5.528043 ACATGACATTTGTAAAAGGCACA 57.472 34.783 0.00 0.00 25.95 4.57
1781 2015 6.677913 ACTACATGACATTTGTAAAAGGCAC 58.322 36.000 0.00 0.00 25.95 5.01
1782 2016 6.892658 ACTACATGACATTTGTAAAAGGCA 57.107 33.333 0.00 0.00 0.00 4.75
1783 2017 8.587952 AAAACTACATGACATTTGTAAAAGGC 57.412 30.769 0.00 0.00 0.00 4.35
1873 2107 9.598517 ACATGTTTCAACTTGTATGAACATTTT 57.401 25.926 8.95 0.00 43.02 1.82
1874 2108 9.598517 AACATGTTTCAACTTGTATGAACATTT 57.401 25.926 4.92 0.00 43.74 2.32
1875 2109 9.248291 GAACATGTTTCAACTTGTATGAACATT 57.752 29.630 13.36 0.00 43.74 2.71
1876 2110 8.412456 TGAACATGTTTCAACTTGTATGAACAT 58.588 29.630 13.36 0.00 43.74 2.71
1877 2111 7.700234 GTGAACATGTTTCAACTTGTATGAACA 59.300 33.333 13.36 0.00 43.74 3.18
1878 2112 7.167468 GGTGAACATGTTTCAACTTGTATGAAC 59.833 37.037 13.36 7.55 43.74 3.18
1879 2113 7.199766 GGTGAACATGTTTCAACTTGTATGAA 58.800 34.615 13.36 0.00 43.74 2.57
1880 2114 6.238897 GGGTGAACATGTTTCAACTTGTATGA 60.239 38.462 13.36 0.00 43.74 2.15
1881 2115 5.920273 GGGTGAACATGTTTCAACTTGTATG 59.080 40.000 13.36 0.28 43.74 2.39
1882 2116 5.833131 AGGGTGAACATGTTTCAACTTGTAT 59.167 36.000 13.36 3.54 43.74 2.29
1883 2117 5.067153 CAGGGTGAACATGTTTCAACTTGTA 59.933 40.000 20.16 0.00 43.74 2.41
1884 2118 4.023291 AGGGTGAACATGTTTCAACTTGT 58.977 39.130 13.36 5.59 45.63 3.16
1885 2119 4.142182 ACAGGGTGAACATGTTTCAACTTG 60.142 41.667 23.66 23.66 45.25 3.16
1886 2120 4.023291 ACAGGGTGAACATGTTTCAACTT 58.977 39.130 13.36 8.48 36.43 2.66
1887 2121 3.631250 ACAGGGTGAACATGTTTCAACT 58.369 40.909 13.36 10.46 36.43 3.16
1888 2122 4.578928 AGTACAGGGTGAACATGTTTCAAC 59.421 41.667 13.36 13.86 35.48 3.18
1889 2123 4.787551 AGTACAGGGTGAACATGTTTCAA 58.212 39.130 13.36 0.00 0.00 2.69
1890 2124 4.431416 AGTACAGGGTGAACATGTTTCA 57.569 40.909 13.36 9.34 0.00 2.69
1891 2125 8.556213 TTAATAGTACAGGGTGAACATGTTTC 57.444 34.615 13.36 9.12 0.00 2.78
1892 2126 8.927675 TTTAATAGTACAGGGTGAACATGTTT 57.072 30.769 13.36 0.00 0.00 2.83
1893 2127 8.927675 TTTTAATAGTACAGGGTGAACATGTT 57.072 30.769 11.78 11.78 0.00 2.71
1894 2128 9.528489 AATTTTAATAGTACAGGGTGAACATGT 57.472 29.630 0.00 0.00 0.00 3.21
1896 2130 9.747898 TGAATTTTAATAGTACAGGGTGAACAT 57.252 29.630 0.00 0.00 0.00 2.71
1897 2131 9.747898 ATGAATTTTAATAGTACAGGGTGAACA 57.252 29.630 0.00 0.00 0.00 3.18
1899 2133 9.747898 ACATGAATTTTAATAGTACAGGGTGAA 57.252 29.630 0.00 0.00 0.00 3.18
1900 2134 9.173021 CACATGAATTTTAATAGTACAGGGTGA 57.827 33.333 0.00 0.00 0.00 4.02
1901 2135 9.173021 TCACATGAATTTTAATAGTACAGGGTG 57.827 33.333 0.00 0.00 0.00 4.61
1902 2136 9.920946 ATCACATGAATTTTAATAGTACAGGGT 57.079 29.630 0.00 0.00 0.00 4.34
1917 2151 9.288576 TGAACACTTCTTAGAATCACATGAATT 57.711 29.630 0.00 0.00 0.00 2.17
1918 2152 8.725148 GTGAACACTTCTTAGAATCACATGAAT 58.275 33.333 16.80 0.00 34.74 2.57
1919 2153 7.714813 TGTGAACACTTCTTAGAATCACATGAA 59.285 33.333 19.17 3.69 37.12 2.57
1920 2154 7.216494 TGTGAACACTTCTTAGAATCACATGA 58.784 34.615 19.17 3.96 37.12 3.07
1921 2155 7.425577 TGTGAACACTTCTTAGAATCACATG 57.574 36.000 19.17 6.82 37.12 3.21
1922 2156 7.361542 GCATGTGAACACTTCTTAGAATCACAT 60.362 37.037 24.54 24.54 43.95 3.21
1923 2157 6.073058 GCATGTGAACACTTCTTAGAATCACA 60.073 38.462 22.92 22.92 41.29 3.58
1924 2158 6.148480 AGCATGTGAACACTTCTTAGAATCAC 59.852 38.462 15.53 15.53 34.95 3.06
1925 2159 6.233434 AGCATGTGAACACTTCTTAGAATCA 58.767 36.000 6.51 0.00 0.00 2.57
1926 2160 6.734104 AGCATGTGAACACTTCTTAGAATC 57.266 37.500 6.51 0.00 0.00 2.52
1927 2161 8.621532 TTAAGCATGTGAACACTTCTTAGAAT 57.378 30.769 6.51 0.00 0.00 2.40
1928 2162 8.445275 TTTAAGCATGTGAACACTTCTTAGAA 57.555 30.769 6.51 0.00 0.00 2.10
1929 2163 8.445275 TTTTAAGCATGTGAACACTTCTTAGA 57.555 30.769 6.51 4.41 0.00 2.10
1930 2164 9.683069 ATTTTTAAGCATGTGAACACTTCTTAG 57.317 29.630 6.51 0.00 0.00 2.18
1992 2226 8.793592 GGAGTACTTTTTAAATCACATGGACTT 58.206 33.333 0.00 0.00 0.00 3.01
1993 2227 7.393515 GGGAGTACTTTTTAAATCACATGGACT 59.606 37.037 0.00 0.00 0.00 3.85
1994 2228 7.393515 AGGGAGTACTTTTTAAATCACATGGAC 59.606 37.037 0.00 0.00 0.00 4.02
1995 2229 7.466804 AGGGAGTACTTTTTAAATCACATGGA 58.533 34.615 0.00 0.00 0.00 3.41
1996 2230 7.611855 AGAGGGAGTACTTTTTAAATCACATGG 59.388 37.037 0.00 0.00 0.00 3.66
1997 2231 8.567285 AGAGGGAGTACTTTTTAAATCACATG 57.433 34.615 0.00 0.00 0.00 3.21
2030 2264 9.395707 CGTAGCGATCTAAACACTCTTATATTT 57.604 33.333 0.00 0.00 0.00 1.40
2031 2265 8.781196 TCGTAGCGATCTAAACACTCTTATATT 58.219 33.333 0.00 0.00 0.00 1.28
2032 2266 8.320396 TCGTAGCGATCTAAACACTCTTATAT 57.680 34.615 0.00 0.00 0.00 0.86
2033 2267 7.719778 TCGTAGCGATCTAAACACTCTTATA 57.280 36.000 0.00 0.00 0.00 0.98
2034 2268 6.615264 TCGTAGCGATCTAAACACTCTTAT 57.385 37.500 0.00 0.00 0.00 1.73
2035 2269 6.426980 TTCGTAGCGATCTAAACACTCTTA 57.573 37.500 0.00 0.00 35.23 2.10
2036 2270 4.959596 TCGTAGCGATCTAAACACTCTT 57.040 40.909 0.00 0.00 0.00 2.85
2037 2271 4.959596 TTCGTAGCGATCTAAACACTCT 57.040 40.909 0.00 0.00 35.23 3.24
2038 2272 7.675270 TTATTTCGTAGCGATCTAAACACTC 57.325 36.000 0.00 0.00 35.23 3.51
2039 2273 7.253552 CGTTTATTTCGTAGCGATCTAAACACT 60.254 37.037 21.74 0.00 39.79 3.55
2040 2274 6.832901 CGTTTATTTCGTAGCGATCTAAACAC 59.167 38.462 21.74 9.17 39.79 3.32
2041 2275 6.020440 CCGTTTATTTCGTAGCGATCTAAACA 60.020 38.462 21.74 0.00 39.79 2.83
2042 2276 6.342498 CCGTTTATTTCGTAGCGATCTAAAC 58.658 40.000 17.10 17.10 38.37 2.01
2043 2277 5.051508 GCCGTTTATTTCGTAGCGATCTAAA 60.052 40.000 0.00 0.00 35.23 1.85
2044 2278 4.442073 GCCGTTTATTTCGTAGCGATCTAA 59.558 41.667 0.00 0.00 35.23 2.10
2045 2279 3.976942 GCCGTTTATTTCGTAGCGATCTA 59.023 43.478 0.00 0.00 35.23 1.98
2046 2280 2.793232 GCCGTTTATTTCGTAGCGATCT 59.207 45.455 0.00 0.00 35.23 2.75
2047 2281 2.793232 AGCCGTTTATTTCGTAGCGATC 59.207 45.455 0.00 0.00 35.23 3.69
2048 2282 2.817901 AGCCGTTTATTTCGTAGCGAT 58.182 42.857 0.00 0.00 35.23 4.58
2049 2283 2.282701 AGCCGTTTATTTCGTAGCGA 57.717 45.000 0.00 0.00 0.00 4.93
2050 2284 4.703899 ATAAGCCGTTTATTTCGTAGCG 57.296 40.909 0.00 0.00 0.00 4.26
2051 2285 8.493547 AGAAATATAAGCCGTTTATTTCGTAGC 58.506 33.333 11.71 0.00 42.79 3.58
2060 2294 8.810427 CGTCTGTAAAGAAATATAAGCCGTTTA 58.190 33.333 0.00 0.00 0.00 2.01
2061 2295 7.201582 CCGTCTGTAAAGAAATATAAGCCGTTT 60.202 37.037 0.00 0.00 0.00 3.60
2062 2296 6.257193 CCGTCTGTAAAGAAATATAAGCCGTT 59.743 38.462 0.00 0.00 0.00 4.44
2063 2297 5.751990 CCGTCTGTAAAGAAATATAAGCCGT 59.248 40.000 0.00 0.00 0.00 5.68
2064 2298 5.981315 TCCGTCTGTAAAGAAATATAAGCCG 59.019 40.000 0.00 0.00 0.00 5.52
2065 2299 6.985059 ACTCCGTCTGTAAAGAAATATAAGCC 59.015 38.462 0.00 0.00 0.00 4.35
2066 2300 8.966194 GTACTCCGTCTGTAAAGAAATATAAGC 58.034 37.037 0.00 0.00 0.00 3.09
2070 2304 9.939802 AAAAGTACTCCGTCTGTAAAGAAATAT 57.060 29.630 0.00 0.00 0.00 1.28
2072 2306 9.768662 TTAAAAGTACTCCGTCTGTAAAGAAAT 57.231 29.630 0.00 0.00 0.00 2.17
2073 2307 9.598517 TTTAAAAGTACTCCGTCTGTAAAGAAA 57.401 29.630 0.00 0.00 0.00 2.52
2074 2308 9.598517 TTTTAAAAGTACTCCGTCTGTAAAGAA 57.401 29.630 0.00 0.00 0.00 2.52
2075 2309 9.768662 ATTTTAAAAGTACTCCGTCTGTAAAGA 57.231 29.630 6.79 0.00 0.00 2.52
2077 2311 9.545105 TGATTTTAAAAGTACTCCGTCTGTAAA 57.455 29.630 6.79 0.00 0.00 2.01
2078 2312 8.981647 GTGATTTTAAAAGTACTCCGTCTGTAA 58.018 33.333 6.79 0.00 0.00 2.41
2079 2313 8.143193 TGTGATTTTAAAAGTACTCCGTCTGTA 58.857 33.333 6.79 0.00 0.00 2.74
2080 2314 6.987992 TGTGATTTTAAAAGTACTCCGTCTGT 59.012 34.615 6.79 0.00 0.00 3.41
2081 2315 7.416154 TGTGATTTTAAAAGTACTCCGTCTG 57.584 36.000 6.79 0.00 0.00 3.51
2082 2316 7.119262 CCATGTGATTTTAAAAGTACTCCGTCT 59.881 37.037 6.79 0.00 0.00 4.18
2083 2317 7.118680 TCCATGTGATTTTAAAAGTACTCCGTC 59.881 37.037 6.79 0.00 0.00 4.79
2084 2318 6.938030 TCCATGTGATTTTAAAAGTACTCCGT 59.062 34.615 6.79 0.00 0.00 4.69
2085 2319 7.119262 AGTCCATGTGATTTTAAAAGTACTCCG 59.881 37.037 6.79 2.07 0.00 4.63
2086 2320 8.336801 AGTCCATGTGATTTTAAAAGTACTCC 57.663 34.615 6.79 0.00 0.00 3.85
2095 2329 9.255304 GCTGTTAAAAAGTCCATGTGATTTTAA 57.745 29.630 9.65 9.65 32.30 1.52
2096 2330 8.417106 TGCTGTTAAAAAGTCCATGTGATTTTA 58.583 29.630 5.53 3.35 32.30 1.52
2097 2331 7.271511 TGCTGTTAAAAAGTCCATGTGATTTT 58.728 30.769 0.00 0.00 34.68 1.82
2098 2332 6.815089 TGCTGTTAAAAAGTCCATGTGATTT 58.185 32.000 0.00 0.00 0.00 2.17
2099 2333 6.403866 TGCTGTTAAAAAGTCCATGTGATT 57.596 33.333 0.00 0.00 0.00 2.57
2100 2334 6.209192 TCATGCTGTTAAAAAGTCCATGTGAT 59.791 34.615 0.00 0.00 0.00 3.06
2101 2335 5.534278 TCATGCTGTTAAAAAGTCCATGTGA 59.466 36.000 0.00 0.00 0.00 3.58
2102 2336 5.771469 TCATGCTGTTAAAAAGTCCATGTG 58.229 37.500 0.00 0.00 0.00 3.21
2103 2337 6.403866 TTCATGCTGTTAAAAAGTCCATGT 57.596 33.333 0.00 0.00 0.00 3.21
2104 2338 7.894376 AATTCATGCTGTTAAAAAGTCCATG 57.106 32.000 0.00 0.00 0.00 3.66
2106 2340 9.995003 AATAAATTCATGCTGTTAAAAAGTCCA 57.005 25.926 0.00 0.00 0.00 4.02
2186 2420 9.110502 CCCTTCTCGAGCTTAAAAATATACTTT 57.889 33.333 7.81 0.00 0.00 2.66
2187 2421 7.226918 GCCCTTCTCGAGCTTAAAAATATACTT 59.773 37.037 7.81 0.00 0.00 2.24
2188 2422 6.706716 GCCCTTCTCGAGCTTAAAAATATACT 59.293 38.462 7.81 0.00 0.00 2.12
2189 2423 6.346678 CGCCCTTCTCGAGCTTAAAAATATAC 60.347 42.308 7.81 0.00 0.00 1.47
2190 2424 5.694910 CGCCCTTCTCGAGCTTAAAAATATA 59.305 40.000 7.81 0.00 0.00 0.86
2191 2425 4.511826 CGCCCTTCTCGAGCTTAAAAATAT 59.488 41.667 7.81 0.00 0.00 1.28
2192 2426 3.869246 CGCCCTTCTCGAGCTTAAAAATA 59.131 43.478 7.81 0.00 0.00 1.40
2193 2427 2.678336 CGCCCTTCTCGAGCTTAAAAAT 59.322 45.455 7.81 0.00 0.00 1.82
2194 2428 2.073816 CGCCCTTCTCGAGCTTAAAAA 58.926 47.619 7.81 0.00 0.00 1.94
2195 2429 1.674817 CCGCCCTTCTCGAGCTTAAAA 60.675 52.381 7.81 0.00 0.00 1.52
2196 2430 0.108329 CCGCCCTTCTCGAGCTTAAA 60.108 55.000 7.81 0.00 0.00 1.52
2197 2431 1.515954 CCGCCCTTCTCGAGCTTAA 59.484 57.895 7.81 0.00 0.00 1.85
2198 2432 3.077519 GCCGCCCTTCTCGAGCTTA 62.078 63.158 7.81 0.00 0.00 3.09
2199 2433 4.459089 GCCGCCCTTCTCGAGCTT 62.459 66.667 7.81 0.00 0.00 3.74
2201 2435 4.760047 TTGCCGCCCTTCTCGAGC 62.760 66.667 7.81 0.00 0.00 5.03
2202 2436 1.884926 GATTGCCGCCCTTCTCGAG 60.885 63.158 5.93 5.93 0.00 4.04
2203 2437 2.186903 GATTGCCGCCCTTCTCGA 59.813 61.111 0.00 0.00 0.00 4.04
2204 2438 2.125147 TGATTGCCGCCCTTCTCG 60.125 61.111 0.00 0.00 0.00 4.04
2205 2439 2.464459 CGTGATTGCCGCCCTTCTC 61.464 63.158 0.00 0.00 0.00 2.87
2206 2440 2.436646 CGTGATTGCCGCCCTTCT 60.437 61.111 0.00 0.00 0.00 2.85
2207 2441 2.746277 ACGTGATTGCCGCCCTTC 60.746 61.111 0.00 0.00 0.00 3.46
2208 2442 2.746277 GACGTGATTGCCGCCCTT 60.746 61.111 0.00 0.00 0.00 3.95
2209 2443 4.778143 GGACGTGATTGCCGCCCT 62.778 66.667 0.00 0.00 0.00 5.19
2211 2445 3.499737 CTGGACGTGATTGCCGCC 61.500 66.667 0.00 0.00 0.00 6.13
2212 2446 4.166011 GCTGGACGTGATTGCCGC 62.166 66.667 0.00 0.00 0.00 6.53
2213 2447 2.434884 AGCTGGACGTGATTGCCG 60.435 61.111 0.00 0.00 0.00 5.69
2214 2448 2.456119 CGAGCTGGACGTGATTGCC 61.456 63.158 0.00 0.00 0.00 4.52
2215 2449 0.807667 ATCGAGCTGGACGTGATTGC 60.808 55.000 0.00 0.00 0.00 3.56
2216 2450 0.926155 CATCGAGCTGGACGTGATTG 59.074 55.000 0.00 0.00 0.00 2.67
2217 2451 0.817654 TCATCGAGCTGGACGTGATT 59.182 50.000 0.00 0.00 0.00 2.57
2218 2452 0.383590 CTCATCGAGCTGGACGTGAT 59.616 55.000 0.00 0.00 0.00 3.06
2219 2453 0.676782 TCTCATCGAGCTGGACGTGA 60.677 55.000 0.00 0.98 0.00 4.35
2220 2454 0.383590 ATCTCATCGAGCTGGACGTG 59.616 55.000 0.00 0.00 0.00 4.49
2221 2455 1.107114 AATCTCATCGAGCTGGACGT 58.893 50.000 0.00 0.00 0.00 4.34
2222 2456 2.292016 ACTAATCTCATCGAGCTGGACG 59.708 50.000 0.00 0.00 0.00 4.79
2223 2457 4.314740 AACTAATCTCATCGAGCTGGAC 57.685 45.455 0.00 0.00 0.00 4.02
2224 2458 5.344743 AAAACTAATCTCATCGAGCTGGA 57.655 39.130 0.00 0.00 0.00 3.86
2225 2459 7.539712 TTTAAAACTAATCTCATCGAGCTGG 57.460 36.000 0.00 0.00 0.00 4.85
2226 2460 8.660373 AGTTTTAAAACTAATCTCATCGAGCTG 58.340 33.333 27.98 0.00 46.75 4.24
2227 2461 8.779354 AGTTTTAAAACTAATCTCATCGAGCT 57.221 30.769 27.98 2.64 46.75 4.09
2244 2478 9.820229 CGCAAGTGAATGTCTAATAGTTTTAAA 57.180 29.630 0.00 0.00 0.00 1.52
2245 2479 9.210329 TCGCAAGTGAATGTCTAATAGTTTTAA 57.790 29.630 0.00 0.00 39.48 1.52
2246 2480 8.766000 TCGCAAGTGAATGTCTAATAGTTTTA 57.234 30.769 0.00 0.00 39.48 1.52
2247 2481 7.667043 TCGCAAGTGAATGTCTAATAGTTTT 57.333 32.000 0.00 0.00 39.48 2.43
2248 2482 7.549134 TCATCGCAAGTGAATGTCTAATAGTTT 59.451 33.333 0.00 0.00 39.48 2.66
2249 2483 7.041721 TCATCGCAAGTGAATGTCTAATAGTT 58.958 34.615 0.00 0.00 39.48 2.24
2250 2484 6.573434 TCATCGCAAGTGAATGTCTAATAGT 58.427 36.000 0.00 0.00 39.48 2.12
2251 2485 7.649370 ATCATCGCAAGTGAATGTCTAATAG 57.351 36.000 0.00 0.00 39.48 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.